Citrus Sinensis ID: 023079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Secondary Structure (PSIPRED)
cccHHHcccccEEEccHHHHHHHcccccEEEEEEcccEEEEcHHHHHHHHHHHHHHcccEEEcccEEEEEEEEccEEEEEEcccccccccccccccccccEEEccEEEEcccccHHHHHHHHcccccccccccccccccEEEEcccccccccccEEccccccccEEEEEccccccEEEcccEEccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEccccccccccEEEcccccccccEEEEEccccHHHHccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHccccccEEccHHHHHHHcccccEHHEEEccccccccHHHHHHHHHHHHHHcccEEEEEcEEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEEEEcccccHHHHHHHHccccccccccHHEEcccEEEEcccccccccEEEcccccccccEEEEEcccccEEEEcccEEEEccccccHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHEEEEcccccccccEEEEcccccHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mkrgtangvhglrmlegfeamkmEPELQCVKALlspasgivdsHSLMLSLVGeaenhgttfsnntsvigghlegNCMNVYISesknlrnwdgvsplqpeltlipklvvnsaglsaPALAKRFigldnvfippayyargcyfslantkvapfkhliypipedgglgvhvtldldgqikfgpdvewidgidDTLSFLNRfdysvnanraerfYPEIRkyypdlrdgslqpsyagirpklsgprqspidfviqgddthgvpglvnlfgiespgltsSMAIAEYVAAKFLR
Flexible Loop (DISEMBL)
mkrgtangvhglrMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDysvnanraerfypEIRKYYPDLRDGSLQPSYAgirpklsgprQSPIDFVIQGDDTHGVPGLVNLFGiespgltssMAIAEYVAAKFLR
Low Complexity Region (SEG)
MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Disordered region (IsUnstruct)
***********LRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDG********************IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK***
Disordered Region (DISOPRED)
MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Disordered Region (DISEMBL)
MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Disordered Region (DISPRO)
MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q91YP0	464	L-2-hydroxyglutarate dehy	yes	no	0.933	0.577	0.264	6e-11
Q5R9N7	419	L-2-hydroxyglutarate dehy	yes	no	0.578	0.396	0.291	7e-09
P37339	422	L-2-hydroxyglutarate oxid	N/A	no	0.885	0.601	0.260	9e-09
A7MBI3	463	L-2-hydroxyglutarate dehy	yes	no	0.937	0.580	0.255	1e-08
Q9H9P8	463	L-2-hydroxyglutarate dehy	yes	no	0.585	0.362	0.288	1e-07
A7SMW7	456	L-2-hydroxyglutarate dehy	N/A	no	0.944	0.594	0.252	3e-07
Q9N4Z0	433	L-2-hydroxyglutarate dehy	no	no	0.905	0.600	0.233	3e-05
P75063	384	Uncharacterized protein M	yes	no	0.853	0.638	0.259	5e-05
P47285	384	Uncharacterized protein M	yes	no	0.547	0.408	0.291	7e-05
A8X2R1	434	L-2-hydroxyglutarate dehy	N/A	no	0.926	0.612	0.208	0.0003

>sp|Q91YP0|L2HDH_MOUSE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=L2hgdh PE=2 SV=1

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 136/314 (43%), Gaps = 46/314 (14%)

Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           +RG  NGV GLR+++  +  K EP  + + A+  P +GIV+   + LS   + +  G + 
Sbjct: 155 ERGLQNGVEGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVNYQQVALSFAQDFQEAGGSI 214

Query: 62  SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELT----LIPKLVVNSAGLSAP 116
             +  V G         + I++  + R+ DG++ P+  + +    +  + VV  AGL + 
Sbjct: 215 LRDFEVKG---------IEIAKENSSRSKDGMNYPIAVKNSKGKEIRCRYVVTCAGLYSD 265

Query: 117 ALAK-RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLD 173
            +++      D   +P     RG Y  L   K    K  IYP+P+     LGVH T  LD
Sbjct: 266 RISELSGCNPDPQIVP----FRGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPRLD 321

Query: 174 GQIKFGP--------------DVEWIDGIDDTLS--FLN----RFDYSVNANRAERFYPE 213
           G I  GP              D +  D ++  L   F+N     F Y VN      F  E
Sbjct: 322 GTIWLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINLVFQHFSYGVNEMYKACFLSE 381

Query: 214 ----IRKYYPDLRDGSLQPSYAGIRPK-LSGPRQSPIDFVIQGDDTHGVPGLVNLFGIES 268
               ++K+ P++    +    AG+R + L        DFV  G        ++++    S
Sbjct: 382 TVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDFVFDGGTGEIADRVLHVRNAPS 441

Query: 269 PGLTSSMAIAEYVA 282
           P  TSS+AI+  +A
Sbjct: 442 PAATSSLAISRMIA 455

Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 2

>sp|Q5R9N7|L2HDH_PONAB L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=L2HGDH PE=2 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 23/189 (12%)

Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           +RG  NGV GLR+++  +  K EP  + + A+  P +GIVD   + LS   + ++ G + 
Sbjct: 154 ERGLQNGVQGLRLIQQDDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQDAGGSV 213

Query: 62  SNNTSVIGGHLEGNCMNVYISESKNLRNWDG------VSPLQPELTLIPKLVVNSAGLSA 115
             N  V          ++ +++    R+ DG      +  ++ E  +  + VV  AGL  
Sbjct: 214 LTNFEV---------KDIEMAKESLSRSIDGMQYPIVIKNIKGE-EIRCQYVVTCAGL-- 261

Query: 116 PALAKRFIGLDNVFIPPAYYA-RGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDL 172
              + R   L      P   + RG Y  L   K    K  IYP+P+     LGVH TL +
Sbjct: 262 --YSDRISELSGCSPDPRIVSFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTLRM 319

Query: 173 DGQIKFGPD 181
           DG I  GP+
Sbjct: 320 DGSIWLGPN 328

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12) GN=lhgO PE=1 SV=3

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 123/315 (39%), Gaps = 61/315 (19%)

Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           +R  ANG+     L   E  + EP +  +  +  P+SGIV    +  ++    ++ G   
Sbjct: 107 ERTAANGIE-REWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEI 165

Query: 62  SNNTSVIGGHLEGNCMNVYISESKN---LRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118
             N  V G           ++E KN   +R   G       L       ++ +GL A  L
Sbjct: 166 IYNAEVSG-----------LNEHKNGVVIRTRQGGEYEASTL-------ISCSGLMADRL 207

Query: 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDGQI 176
            K  +GL+  FI   +  RG YF LA        HLIYPIP+     LGVH+T  +DG +
Sbjct: 208 VK-MLGLEPGFIICPF--RGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSV 264

Query: 177 KFGPDV----------EWIDGIDDTLSFL----------NRFDYSV----NANRAERFYP 212
             GP+           +      DTL  L          N     +    N+     +  
Sbjct: 265 TVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLR 324

Query: 213 EIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID---FVIQGDDTHGVPGLVNLFGIESP 269
            ++KY P L    LQP  AG+R +   P    ID   FV         P  ++     SP
Sbjct: 325 LVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVT-------TPRTIHTCNAPSP 377

Query: 270 GLTSSMAIAEYVAAK 284
             TS++ I  ++ +K
Sbjct: 378 AATSAIPIGAHIVSK 392

Oxidizes L-2-hydroxyglutarate, probably to recover alpha-ketoglutarate mistakenly reduced by other enzymes or formed during growth on propionate.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|A7MBI3|L2HDH_BOVIN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=L2HGDH PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 44/313 (14%)

Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           +RG  NGV GLR+++  +  K EP  + + A+  P +GIVD   +  S   + +  G + 
Sbjct: 154 ERGLQNGVQGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSV 213

Query: 62  SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELT----LIPKLVVNSAGLSAP 116
             N  V          ++ ++     R+ DG+  P+    T    +  + VV  AGL + 
Sbjct: 214 LTNFEV---------EDIEMARESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYSD 264

Query: 117 ALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDG 174
            +++      N  I P    RG Y  L   K    K  IYP+P+     LGVH T  +DG
Sbjct: 265 RISELSGCNPNPRIVP---FRGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDG 321

Query: 175 QIKFGP--------------DVEWIDGIDDTLS------FLNRFDYSVNANRAERF---- 210
            I  GP              D    D +D  +           F Y VN      F    
Sbjct: 322 NIWLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSAT 381

Query: 211 YPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVIQGDDTHGVPGLVNLFGIESP 269
              ++K+ P++    +    AG+R +      + I DFV  G        ++++    SP
Sbjct: 382 VKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSP 441

Query: 270 GLTSSMAIAEYVA 282
             TSS+AI+  +A
Sbjct: 442 AATSSLAISGMIA 454

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q9H9P8|L2HDH_HUMAN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=L2HGDH PE=1 SV=3

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 19/187 (10%)

Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           ++G  NGV GLR+++  +  K EP  + + A+  P +GIVD   + LS   + +  G + 
Sbjct: 154 EKGLQNGVPGLRLIQQEDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSV 213

Query: 62  SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELT----LIPKLVVNSAGLSAP 116
             N  V G         + +++    R+ DG+  P+  + T    +  + VV  AGL + 
Sbjct: 214 LTNFEVKG---------IEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSD 264

Query: 117 ALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDG 174
            +++      +  I P    RG Y  L   K    K  IYP+P+     LGVH T  +DG
Sbjct: 265 RISELSGCTPDPRIVP---FRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDG 321

Query: 175 QIKFGPD 181
            I  GP+
Sbjct: 322 SIWLGPN 328

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|A7SMW7|L2HDH_NEMVE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella vectensis GN=v1g172254 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 128/317 (40%), Gaps = 46/317 (14%)

Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           +RG  NGV  L M++     ++EP  + + A++SP +GIVD   + L+       +G  F
Sbjct: 145 ERGKKNGVKDLTMVDKRGIKEIEPHCEGMFAIVSPNTGIVDWAQVALA-------YGDDF 197

Query: 62  SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PL----QPELTLIPKLVVNSAGLSAP 116
                 I    E           K+     G++ P+      + T+  + V+   GL + 
Sbjct: 198 RKGGGDIFTGYEVTDFKCASESGKSQEKEAGLTHPVTVFSNNKQTIKCRYVITCGGLYSD 257

Query: 117 ALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDG 174
            LA++        I P    RG Y  L   K    K  IYP+P+     LGVH T  +DG
Sbjct: 258 RLAEKSGCNREPRIVPF---RGDYLVLKPEKCHLVKGNIYPVPDPNFPFLGVHFTPRMDG 314

Query: 175 QIKFGP--------------DVEWIDGIDDTLSF-------LNRFDYSVNA-----NRAE 208
            +  GP              D+   D + D L+F          F + V       N A 
Sbjct: 315 SVWLGPNAVLAFAREGYNLLDINLRD-LADALAFRGLRQLMFKYFSFGVGEYYRGLNHAA 373

Query: 209 RFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID-FVIQGDDTHGVPGLVNLFGIE 267
           +   +++KY P +    +    +G+R +      + +D FV  G        ++++    
Sbjct: 374 QV-KQLQKYIPSVTADDVVSGPSGVRAQALDRDGNLVDDFVFDGGVGEIGSRVLHVRNAP 432

Query: 268 SPGLTSSMAIAEYVAAK 284
           SP  TSS+AIA  VA K
Sbjct: 433 SPAATSSLAIARMVADK 449

Nematostella vectensis (taxid: 45351)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q9N4Z0|L2HDH_CAEEL L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=Y45G12B.3 PE=3 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 119/317 (37%), Gaps = 57/317 (17%)

Query: 3   RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
           R   NG   + M++  +  ++EP  + +KAL SP +GIVD                  + 
Sbjct: 132 RAQTNGCRDIEMIDSSKITELEPHCRGLKALWSPHTGIVD------------------WG 173

Query: 63  NNTSVIGGHLEGNCMNVYISE--SKNLRNWDGVSPLQ----PELT-LIPKLVVNSAGLSA 115
             T   G   E     +Y S    K   N D   P++    P L     K ++  AGL  
Sbjct: 174 YVTKRFGEDFEKRGGKIYTSYPLEKISDNHDPGYPIRVSSGPALAEFETKNLITCAGLQ- 232

Query: 116 PALAKRFIGLDNVFIPPAYYA-RGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDL 172
              + R   L      P     RG Y  L   K    K  IYP+P+     LGVH T  +
Sbjct: 233 ---SDRVAALSGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRM 289

Query: 173 DGQIKFGPDVEWIDGIDDTLSF-------LNRFDYSVNANRAERFY-------------- 211
           +G I  GP+       +    F       L    YS      ++ +              
Sbjct: 290 NGDIWLGPNAVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGVWIA 349

Query: 212 ---PEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVIQGDDTHGVPGLVNLFGIE 267
               +++++ P+L+   +    AG+R +      + + DFV         P L+++    
Sbjct: 350 AQVKQLQRFIPELKLSDVTRGPAGVRAQAMDSAGNLVDDFVFDSGTGKLSPLLMHVRNAP 409

Query: 268 SPGLTSSMAIAEYVAAK 284
           SP  TSS+AIA+ + ++
Sbjct: 410 SPAATSSLAIAKMITSE 426

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|P75063|Y051_MYCPN Uncharacterized protein MG039 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_051 PE=4 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 117/285 (41%), Gaps = 40/285 (14%)

Query: 2   KRGTANGVH--GLRMLEGFEAMKMEPEL--QCVKALLSPASGIVDSHSLMLSLVGEAENH 57
           +RG AN ++   ++ML   E +K+EP +  + V  L    S  +D       L   A+ +
Sbjct: 108 QRGIANQINLEDIQMLSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQN 167

Query: 58  GTTFSNNTSV--IGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115
                 NT V  I   ++G     Y+  + N           P   +  K ++++AG  A
Sbjct: 168 KVQICTNTEVTNISKQVDG----TYLVWTNN--------ETTPSFKV--KKIIDAAGHYA 213

Query: 116 PALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQ 175
             LA      D+         RG Y  + N        +++ +P   G GV V+  LDG 
Sbjct: 214 DYLA-HLAKADDF---EQTTRRGQYVVVTNQGELHLNSMVFMVPTIHGKGVIVSPMLDGN 269

Query: 176 IKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYY-PDLRDGSLQPSYAGIR 234
              GP    +DG+D   +     D       A     +I K+  P L   +   S+AG R
Sbjct: 270 FLVGPTA--LDGVDKEATRYITKD-------APCMLTKIGKHMVPSLNINNALISFAGSR 320

Query: 235 PKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAE 279
           P      ++  DF+I+    H  P  V L G++SPGLT++ AI  
Sbjct: 321 P----IDKATNDFIIRV--AHNDPDFVILGGMKSPGLTAAPAIVR 359

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|P47285|Y039_MYCGE Uncharacterized protein MG039 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG039 PE=4 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 105 KLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL 164
           K ++++AG  A  LA+    +DN         +G Y  L N        +I+ +P   G 
Sbjct: 203 KKLIDAAGHYADWLAET-TQVDNF---KQTTRKGQYLVLKNQNNLKINTIIFMVPTIHGK 258

Query: 165 GVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDG 224
           GV V   LDG I  GP+   ++GI+   +       S++ +   +     +K  P L+  
Sbjct: 259 GVVVAEMLDGNILVGPNA--VEGIEKNKT------RSIDLDSINQIKTIGKKMVPSLQFE 310

Query: 225 SLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAE 279
           +   S+AG R           DFVI+   ++  P  + L G++SPGLTSS AIA+
Sbjct: 311 NSIYSFAGSR----AIDIETNDFVIRTAKSN--PNFIILGGMKSPGLTSSPAIAK 359

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

>sp|A8X2R1|L2HDH_CAEBR L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG06643 PE=3 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 46/312 (14%)

Query: 3   RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
           R   NG   + M++      +EP  + +KAL SP +GIVD   +      + E  G    
Sbjct: 132 RAQTNGCRDIEMIDSKRITDIEPHCKGLKALWSPHTGIVDWGYVTKKFGEDFEKRGGKIY 191

Query: 63  NNTSV--IGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120
            +  +  I  +L+ +   + +S   +  +++             K ++  AGL +  +A 
Sbjct: 192 TSYPLEKIEDNLKDSNYPIRVSSDPSYADFE------------TKNLITCAGLQSDRVAA 239

Query: 121 -RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIK 177
                 D   +P     RG Y  L   K    K  IYP+P+     LGVH T  ++G I 
Sbjct: 240 LSGCSTDPKIVP----FRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRMNGDIW 295

Query: 178 FGPDVEWIDGIDDTLSF-------LNRFDYSVNANRAERFY-----------------PE 213
            GP+       +    F       L    YS      ++ +                  +
Sbjct: 296 LGPNAVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGIWIAAQVKQ 355

Query: 214 IRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLV-NLFGIESPGLT 272
           ++++ P+L+   +    +G+R +      + +D  +    T  +  L+ ++    SP  T
Sbjct: 356 LQRFIPELKYSDVTRGPSGVRAQAMDSAGNLVDDFVFDSGTGKLSSLIMHVRNAPSPAAT 415

Query: 273 SSMAIAEYVAAK 284
           SS+AIA+ + ++
Sbjct: 416 SSLAIAKMITSE 427

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
224089869	430	predicted protein [Populus trichocarpa]	1.0	0.667	0.795	1e-135
225440270	424	PREDICTED: l-2-hydroxyglutarate dehydrog	1.0	0.676	0.773	1e-129
357497233	483	L-2-hydroxyglutarate dehydrogenase [Medi	0.996	0.592	0.700	1e-127
255572899	417	NAD dehydrogenase, putative [Ricinus com	0.979	0.673	0.729	1e-123
356514080	410	PREDICTED: l-2-hydroxyglutarate dehydrog	0.986	0.690	0.727	1e-123
388493312	418	unknown [Lotus japonicus]	0.996	0.684	0.720	1e-122
188509918	423	putative oxidoreductase protein [Gossypi	0.989	0.671	0.738	1e-119
133902300	423	putative FAD-dependent oxidoreductase [G	0.989	0.671	0.738	1e-119
133902322	423	putative FAD-dependent oxidoreductase [G	0.989	0.671	0.738	1e-119
133902307	423	putative FAD-dependent oxidoreductase [G	0.989	0.671	0.735	1e-118

>gi|224089869|ref|XP_002308844.1| predicted protein [Populus trichocarpa] gi|222854820|gb|EEE92367.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/288 (79%), Positives = 262/288 (90%), Gaps = 1/288 (0%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTT 60
           M RGT NGV  L+MLEGFEAMKMEPELQC KALLSP SGIVDSHSLMLSLVGEAEN+GTT
Sbjct: 143 MDRGTQNGVDNLKMLEGFEAMKMEPELQCKKALLSPVSGIVDSHSLMLSLVGEAENNGTT 202

Query: 61  FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120
           FS N++VI GHLEGNC+++YI ESK+L NW+G  PL PEL L+PKLVVNSAGLS+ ALAK
Sbjct: 203 FSYNSTVISGHLEGNCLHLYIVESKDLENWNGDYPLHPELVLVPKLVVNSAGLSSLALAK 262

Query: 121 RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP 180
           RF GLDN  IPP ++ARGCYF+L++TKV PF+HLIYPIPEDGGLGVHVTLDLDG +KFGP
Sbjct: 263 RFHGLDNGIIPPGFFARGCYFTLSSTKVPPFEHLIYPIPEDGGLGVHVTLDLDGHLKFGP 322

Query: 181 DVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP 240
           DVEWIDGIDD  SFLN++DYSV+A+RAERFYPEIRKYYP+L+DGSLQP Y+GIRPK+SGP
Sbjct: 323 DVEWIDGIDDVSSFLNKYDYSVSASRAERFYPEIRKYYPNLKDGSLQPGYSGIRPKISGP 382

Query: 241 RQSPIDFVI-QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 287
           RQSPIDFVI QG+D HGVPGLVNLFGIESPGLT+SMAIAE++A++FL+
Sbjct: 383 RQSPIDFVIQQGEDIHGVPGLVNLFGIESPGLTASMAIAEHIASRFLK 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440270|ref|XP_002278843.1| PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial [Vitis vinifera] gi|297741744|emb|CBI32876.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/287 (77%), Positives = 250/287 (87%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTT 60
           M RG  NGV GLRMLEGFEAM+MEPELQCV+ALLSPASGIVD+HSLMLSLVGEAENH TT
Sbjct: 138 MIRGNENGVDGLRMLEGFEAMEMEPELQCVRALLSPASGIVDTHSLMLSLVGEAENHRTT 197

Query: 61  FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120
           F  NT+VIGGHLEG+ + ++ISESK+L NWD   PL PE+ L+ KLVVNSAGLSAPALAK
Sbjct: 198 FCYNTAVIGGHLEGDHICLHISESKDLENWDRRFPLHPEVILMAKLVVNSAGLSAPALAK 257

Query: 121 RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP 180
           RF GL++  IP ++YARGCYF L+  K  PFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP
Sbjct: 258 RFDGLNSTVIPASHYARGCYFVLSKMKTPPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP 317

Query: 181 DVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP 240
           DVEWI+G DD  SFLN+FDYSV A R ERFYPEIRKYYP+L+D SL+P YAGIRPKLSG 
Sbjct: 318 DVEWINGADDISSFLNKFDYSVCAKRVERFYPEIRKYYPNLKDDSLEPGYAGIRPKLSGA 377

Query: 241 RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 287
           +QS +DFVIQG+D HGVPGLVNLFGIESPGLTSSMAIAE++ A++LR
Sbjct: 378 QQSAVDFVIQGEDIHGVPGLVNLFGIESPGLTSSMAIAEHIVARYLR 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497233|ref|XP_003618905.1| L-2-hydroxyglutarate dehydrogenase [Medicago truncatula] gi|355493920|gb|AES75123.1| L-2-hydroxyglutarate dehydrogenase [Medicago truncatula]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/311 (70%), Positives = 258/311 (82%), Gaps = 25/311 (8%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLV--------- 51
           +  G  NGV GL+M++G +AMKMEPELQCVKA+LSP SGIVDSHSLMLSLV         
Sbjct: 173 LNHGIQNGVDGLKMMDGVDAMKMEPELQCVKAILSPLSGIVDSHSLMLSLVVCISSFYYH 232

Query: 52  ----------------GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSP 95
                           GEAENHG TF+ N++VIGGH+EGN + +++SE+K+L+ W+G S 
Sbjct: 233 VVKLDLVLNINPMLVQGEAENHGATFTYNSTVIGGHMEGNEICLHVSETKSLKEWNGKSS 292

Query: 96  LQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI 155
           LQPEL LIPKLVVNSAGLSA ALAKRF GL+N  IPPAYYARGCYF+L+NTK +PF+HLI
Sbjct: 293 LQPELVLIPKLVVNSAGLSALALAKRFTGLENKVIPPAYYARGCYFTLSNTKASPFRHLI 352

Query: 156 YPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIR 215
           YPIPEDGGLGVHVTLDL+GQ+KFGPDVEWIDG+DD  SF N+FDYSV ANRAE+FYPEIR
Sbjct: 353 YPIPEDGGLGVHVTLDLNGQVKFGPDVEWIDGVDDISSFQNKFDYSVQANRAEKFYPEIR 412

Query: 216 KYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSM 275
           KYYP+L+DGSL+P Y+GIRPKLSGP QSP+DFVIQG+D HGVPGL+NLFGIESPGLTSS+
Sbjct: 413 KYYPNLKDGSLEPGYSGIRPKLSGPCQSPVDFVIQGEDIHGVPGLINLFGIESPGLTSSL 472

Query: 276 AIAEYVAAKFL 286
           AIA++++ KFL
Sbjct: 473 AIADFISTKFL 483

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572899|ref|XP_002527381.1| NAD dehydrogenase, putative [Ricinus communis] gi|223533252|gb|EEF35006.1| NAD dehydrogenase, putative [Ricinus communis]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/281 (72%), Positives = 248/281 (88%)

Query: 7   NGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTS 66
           NGVHGLRMLEGFEAMKMEP LQCVKAL SP SGIVD+HSLMLSL+GEAEN+ TT S N++
Sbjct: 137 NGVHGLRMLEGFEAMKMEPRLQCVKALFSPVSGIVDAHSLMLSLLGEAENYKTTLSYNST 196

Query: 67  VIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD 126
           V GGHLEGN +++++    +L NWDG S L PEL LIP+LV+NSAGLSA  LA++F GL 
Sbjct: 197 VTGGHLEGNHLHLHVIGRNHLENWDGKSVLHPELILIPELVINSAGLSALQLARKFDGLP 256

Query: 127 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWID 186
           +  IPPA++ARGCYF+L+NT++ PF+HLIYPIPEDGGLGVHVTLDLDGQ+KFGPDVEWI 
Sbjct: 257 STMIPPAHFARGCYFTLSNTRIPPFQHLIYPIPEDGGLGVHVTLDLDGQVKFGPDVEWIH 316

Query: 187 GIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID 246
           GI+D  SFL+R+DY+V+A+R ERFYPEIRKYYP+L+ G+L+  YAGIRPK+SGP Q+P+D
Sbjct: 317 GIEDISSFLDRYDYTVSAHRVERFYPEIRKYYPNLKTGTLEIGYAGIRPKVSGPGQAPMD 376

Query: 247 FVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 287
           FVIQG+D HGVPGL+NLFGIESPGLTSSMAIAEY+A++FL+
Sbjct: 377 FVIQGEDIHGVPGLINLFGIESPGLTSSMAIAEYIASRFLK 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514080|ref|XP_003525735.1| PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Glycine max]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/283 (72%), Positives = 247/283 (87%)

Query: 4   GTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSN 63
           G  NGV GL++++G EAMKMEPELQCVKA+LSP +GIVDSHSLMLSLVGEAEN GTTF+ 
Sbjct: 128 GIQNGVDGLKIVDGVEAMKMEPELQCVKAILSPLTGIVDSHSLMLSLVGEAENQGTTFTY 187

Query: 64  NTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI 123
           N++VIGGHLEG+ + ++++E+  L  W G S LQPEL LIPKLVVNS GLS+P LAKRF 
Sbjct: 188 NSTVIGGHLEGSEICLHVTETDRLTEWKGTSILQPELLLIPKLVVNSTGLSSPVLAKRFN 247

Query: 124 GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVE 183
           G  +  +PPAYYARGCYF+L+NTK +PF+ LIYPIPEDGG+GVHVT+DL+GQ+KFGP+VE
Sbjct: 248 GPKSGVVPPAYYARGCYFTLSNTKNSPFRRLIYPIPEDGGIGVHVTIDLNGQVKFGPNVE 307

Query: 184 WIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQS 243
           WID +DD  SF N++DYSVNANRAERFYPEIRKYYP+L+DGSL+P Y+GIRPKLSGP Q 
Sbjct: 308 WIDSVDDISSFQNKYDYSVNANRAERFYPEIRKYYPNLKDGSLEPGYSGIRPKLSGPLQP 367

Query: 244 PIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286
           P DFVIQG+D HGVPGL+NLFGIESPGLTSSMAIAE+++ +FL
Sbjct: 368 PSDFVIQGEDIHGVPGLINLFGIESPGLTSSMAIAEFISTRFL 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493312|gb|AFK34722.1| unknown [Lotus japonicus]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/286 (72%), Positives = 245/286 (85%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTT 60
           +  G  NGV  L M+ G +AMKMEPELQCVKA+LSP SGIVDSHSLMLSLVGEAENH TT
Sbjct: 132 LNHGIQNGVDSLEMINGAKAMKMEPELQCVKAILSPLSGIVDSHSLMLSLVGEAENHRTT 191

Query: 61  FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120
           F+ N++VIGGHLEG  + ++I E+K L+ WDG S L PEL L+PKL+VNS GLSAPALAK
Sbjct: 192 FTYNSTVIGGHLEGKEICLHILETKCLKEWDGTSILHPELILVPKLLVNSTGLSAPALAK 251

Query: 121 RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP 180
           RF  L +  IPP+YYARGCYF+L++TK +PF+HLIYPIPEDGGLGVHVTLDL+GQIKFGP
Sbjct: 252 RFTSLQSEVIPPSYYARGCYFTLSDTKASPFRHLIYPIPEDGGLGVHVTLDLNGQIKFGP 311

Query: 181 DVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP 240
           DVEWIDG+DD  SF N+FDYSV+ANRAE+FYP IR YYP+L+D +L+P YAGIRPKLS P
Sbjct: 312 DVEWIDGVDDISSFQNKFDYSVHANRAEQFYPAIRSYYPNLKDRALEPGYAGIRPKLSRP 371

Query: 241 RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286
            QSP+DFVIQG+D HG+PGLVNLFGIESPGLT+S+AIA++V+ + L
Sbjct: 372 GQSPVDFVIQGEDIHGIPGLVNLFGIESPGLTASLAIADFVSTRLL 417

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509918|gb|ACD56607.1| putative oxidoreductase protein [Gossypioides kirkii]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/287 (73%), Positives = 241/287 (83%), Gaps = 3/287 (1%)

Query: 3   RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
           RG  NGV  LRML+  EA+KMEPEL CVKALLSPASGI+DSHSLMLSLVGEAE +G TFS
Sbjct: 135 RGIQNGVENLRMLDASEAIKMEPELHCVKALLSPASGILDSHSLMLSLVGEAETNGATFS 194

Query: 63  NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122
            NT+VIGGHLEGN M +++ E+K L NWDG +PLQP+L L+P++VVNS+GLSAPALAKRF
Sbjct: 195 YNTAVIGGHLEGNQMVLHVCETKTLGNWDGNTPLQPDLLLMPQIVVNSSGLSAPALAKRF 254

Query: 123 IGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFG 179
            GL+   IPPAY ARG YF L+N   T+  PFKHLIYP+PE+GGLGVHVTLDLDGQ+KFG
Sbjct: 255 HGLNTATIPPAYCARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHVTLDLDGQLKFG 314

Query: 180 PDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239
           PDVEWI  + DT +FLN+FDYSV+A+R  RFYPEIRKYYP+L+DGSL P YAGIRPKL G
Sbjct: 315 PDVEWIPHVPDTTNFLNKFDYSVSADRVARFYPEIRKYYPNLKDGSLIPGYAGIRPKLHG 374

Query: 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286
           P QS  DFVIQG+D H V GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 375 PGQSACDFVIQGEDIHEVAGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902300|gb|ABO41831.1| putative FAD-dependent oxidoreductase [Gossypium raimondii]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/287 (73%), Positives = 240/287 (83%), Gaps = 3/287 (1%)

Query: 3   RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
           RG  NGV  LRML+  EA+KMEPEL CVKALLSPASGI+DSHSLMLSLVGEAE +G TFS
Sbjct: 135 RGIQNGVENLRMLDASEAIKMEPELHCVKALLSPASGILDSHSLMLSLVGEAETNGATFS 194

Query: 63  NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122
            NT+VIGGHLEGN M +++ E+K L NWDG +PLQ +L L+PK+VVNS+GLSAP LAKRF
Sbjct: 195 YNTAVIGGHLEGNQMVLHVCETKTLTNWDGNTPLQLDLLLMPKIVVNSSGLSAPTLAKRF 254

Query: 123 IGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFG 179
            GL+   IPPAYYARG YF L+N   T+  PFKHLIYP+PE+GGLGVHVTLDLDGQ+KFG
Sbjct: 255 HGLNTAIIPPAYYARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHVTLDLDGQLKFG 314

Query: 180 PDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239
           PDVEWI  + DT +FLN+FDYSV+A+   RFYPEIRKYYP+L+DGSL P YAGIRPKL G
Sbjct: 315 PDVEWIPHVPDTTNFLNKFDYSVSADHVARFYPEIRKYYPNLKDGSLIPGYAGIRPKLHG 374

Query: 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286
           P QS  DFVIQG+D HGV GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 375 PGQSACDFVIQGEDIHGVGGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902322|gb|ABO41850.1| putative FAD-dependent oxidoreductase [Gossypium hirsutum]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/287 (73%), Positives = 240/287 (83%), Gaps = 3/287 (1%)

Query: 3   RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
           RG  NGV  LRML+  EA+KMEPEL CVKALLSPASGI+DSHSLMLSLVGEAE +G TFS
Sbjct: 135 RGIQNGVENLRMLDASEAIKMEPELHCVKALLSPASGILDSHSLMLSLVGEAETNGATFS 194

Query: 63  NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122
            NT+VIGGHLEGN M +++ E+K L NWDG +PLQ +L L+PK+VVNS+GLSAP LAKRF
Sbjct: 195 YNTAVIGGHLEGNQMVLHVCETKTLTNWDGNTPLQLDLLLMPKIVVNSSGLSAPTLAKRF 254

Query: 123 IGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFG 179
            GL+   IPPAYYARG YF L+N   T+  PFKHLIYP+PE+GGLGVHVTLDLDGQ+KFG
Sbjct: 255 HGLNTAIIPPAYYARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHVTLDLDGQLKFG 314

Query: 180 PDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239
           PDVEWI  + DT +FLN+FDYSV+A+   RFYPEIRKYYP+L+DGSL P YAGIRPKL G
Sbjct: 315 PDVEWIPHVPDTTNFLNKFDYSVSADHVARFYPEIRKYYPNLKDGSLIPGYAGIRPKLHG 374

Query: 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286
           P QS  DFVIQG+D HGV GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 375 PGQSACDFVIQGEDIHGVGGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902307|gb|ABO41837.1| putative FAD-dependent oxidoreductase [Gossypium arboreum]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/287 (73%), Positives = 240/287 (83%), Gaps = 3/287 (1%)

Query: 3   RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
           RG  NGV  LRML+  EA+KMEPEL CVKALLSPASGI+DSHSLMLSLVGEAE +G TFS
Sbjct: 135 RGIQNGVENLRMLDASEAIKMEPELHCVKALLSPASGILDSHSLMLSLVGEAETNGATFS 194

Query: 63  NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122
            NT+VIGGHLEGN + +++ E+K L NWDG +PLQP+L L+P +VVNS+GLSAP LAKRF
Sbjct: 195 YNTAVIGGHLEGNQIVLHVCETKTLTNWDGNTPLQPDLLLMPIIVVNSSGLSAPTLAKRF 254

Query: 123 IGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFG 179
            GL+   IPPAYYARG YF L+N   T+  PFKHLIYP+PE+GGLGVHVTLDLDGQ+KFG
Sbjct: 255 HGLNTAIIPPAYYARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHVTLDLDGQLKFG 314

Query: 180 PDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239
           PDVEWI  + DT +FLN+FDYSV+ +R  RFYPEIRKYYP+L+DGSL P YAGIRPKL G
Sbjct: 315 PDVEWIPHVPDTTNFLNKFDYSVSVDRVARFYPEIRKYYPNLKDGSLIPGYAGIRPKLHG 374

Query: 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286
           P QS  DFVIQG+D HGV GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 375 PGQSACDFVIQGEDIHGVGGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2103660	483	AT3G56840 [Arabidopsis thalian	0.989	0.587	0.636	6.4e-99
CGD|CAL0000481	400	orf19.6238 [Candida albicans (	0.843	0.605	0.350	2e-31
UNIPROTKB|Q5AB11	400	CaO19.6238 "Potential FAD-depe	0.843	0.605	0.350	2e-31
FB|FBgn0032729	455	CG10639 [Drosophila melanogast	0.933	0.589	0.299	5e-13
UNIPROTKB|F1SHX9	463	L2HGDH "Uncharacterized protei	0.581	0.360	0.292	4.8e-08
DICTYBASE|DDB_G0267656	446	l2hgdh "L-2-hydroxyglutarate d	0.585	0.376	0.281	5.9e-08
UNIPROTKB|A7MBI3	463	L2HGDH "L-2-hydroxyglutarate d	0.581	0.360	0.292	6e-08
UNIPROTKB|Q9KN19	403	VC_A0147 "Transcriptional regu	0.522	0.372	0.304	6.6e-08
TIGR_CMR|VC_A0147	403	VC_A0147 "transcriptional regu	0.522	0.372	0.304	6.6e-08
RGD|1306250	463	L2hgdh "L-2-hydroxyglutarate d	0.581	0.360	0.281	8.4e-08

TAIR|locus:2103660 AT3G56840 [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 194/305 (63%), Positives = 236/305 (77%)

Query:     1 MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLV--------- 51
             M  GT N V GLRMLEGFEAM+MEP+L+CVKALLSP SGI+D+HS MLSLV         
Sbjct:   182 MHLGTQNRVSGLRMLEGFEAMRMEPQLRCVKALLSPESGILDTHSFMLSLVEKSFDFMVY 241

Query:    52 ---------GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTL 102
                      GEA+N+  TFS NT V+ G +E   M++Y++++   R  +     + +L L
Sbjct:   242 RDNNNLRLQGEAQNNHATFSYNTVVLNGRVEEKKMHLYVADT---RFSESRCEAEAQLEL 298

Query:   103 IPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG 162
             IP LVVNSAGL A ALAKR  GLD+ F+P ++YARGCYF+L+  K  PF  L+YPIPE+G
Sbjct:   299 IPNLVVNSAGLGAQALAKRLHGLDHRFVPSSHYARGCYFTLSGIKAPPFNKLVYPIPEEG 358

Query:   163 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR 222
             GLGVHVT+DL+G +KFGPDVEWI+  DDT SFLN+FDY VN  R+E+FYPEIRKYYPDL+
Sbjct:   359 GLGVHVTVDLNGLVKFGPDVEWIECTDDTSSFLNKFDYRVNPQRSEKFYPEIRKYYPDLK 418

Query:   223 DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA 282
             DGSL+P Y+GIRPKLSGP+QSP DFVIQG++THGVPGLVNLFGIESPGLTSS+AIAE++A
Sbjct:   419 DGSLEPGYSGIRPKLSGPKQSPADFVIQGEETHGVPGLVNLFGIESPGLTSSLAIAEHIA 478

Query:   283 AKFLR 287
              KFLR
Sbjct:   479 NKFLR 483

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

CGD|CAL0000481 orf19.6238 [Candida albicans (taxid:5476)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 95/271 (35%), Positives = 136/271 (50%)

Query:    20 AMKMEPELQCVKALL-SPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN 78
             A    P ++   A+L SP +GI+ SH   L        H   F NN   IG + E   + 
Sbjct:   144 AKAKHPLIRAETAILESPTTGIISSHDYTLF-------HQARFENNNGTIGLNTELTDLE 196

Query:    79 VYISESKNLRNWD-GVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYAR 137
              Y   +K   N+   +     E+ L    VVN+AGL A  ++   +  +  +    Y+A+
Sbjct:   197 -Y---NKGTSNYTLRLESDAGEMELTSDNVVNAAGLYAAQVSNLLLPKERHY--QGYFAK 250

Query:   138 GCYFSLA-NTKVAPFKH-LIYPIPEDGG--LGVHVTLDLDGQIKFGPDVEWIDGIDDTLS 193
             G YFS +  T +      LIYP P      LG H+T DL GQ++FGPD+EW+D     + 
Sbjct:   251 GNYFSYSPTTSIGKITDVLIYPCPNPNASSLGTHLTFDLGGQLRFGPDLEWLD-----IK 305

Query:   194 FLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSP---IDFVIQ 250
                  DY+ N    +  Y  I+ Y+P +   SL PSY+G+RPK+    ++     DF I+
Sbjct:   306 RAEDIDYTPNPQNLKEAYKAIKTYFPSITPDSLHPSYSGVRPKIYSLEENMKKFADFEIK 365

Query:   251 GDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 281
              +   G PG VNL G+ESPGLT+S AI EYV
Sbjct:   366 QEP--GYPGFVNLLGMESPGLTASWAIGEYV 394

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5AB11 CaO19.6238 "Potential FAD-dependent oxidoreductase" [Candida albicans SC5314 (taxid:237561)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 95/271 (35%), Positives = 136/271 (50%)

Query:    20 AMKMEPELQCVKALL-SPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN 78
             A    P ++   A+L SP +GI+ SH   L        H   F NN   IG + E   + 
Sbjct:   144 AKAKHPLIRAETAILESPTTGIISSHDYTLF-------HQARFENNNGTIGLNTELTDLE 196

Query:    79 VYISESKNLRNWD-GVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYAR 137
              Y   +K   N+   +     E+ L    VVN+AGL A  ++   +  +  +    Y+A+
Sbjct:   197 -Y---NKGTSNYTLRLESDAGEMELTSDNVVNAAGLYAAQVSNLLLPKERHY--QGYFAK 250

Query:   138 GCYFSLA-NTKVAPFKH-LIYPIPEDGG--LGVHVTLDLDGQIKFGPDVEWIDGIDDTLS 193
             G YFS +  T +      LIYP P      LG H+T DL GQ++FGPD+EW+D     + 
Sbjct:   251 GNYFSYSPTTSIGKITDVLIYPCPNPNASSLGTHLTFDLGGQLRFGPDLEWLD-----IK 305

Query:   194 FLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSP---IDFVIQ 250
                  DY+ N    +  Y  I+ Y+P +   SL PSY+G+RPK+    ++     DF I+
Sbjct:   306 RAEDIDYTPNPQNLKEAYKAIKTYFPSITPDSLHPSYSGVRPKIYSLEENMKKFADFEIK 365

Query:   251 GDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 281
              +   G PG VNL G+ESPGLT+S AI EYV
Sbjct:   366 QEP--GYPGFVNLLGMESPGLTASWAIGEYV 394

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0032729 CG10639 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 94/314 (29%), Positives = 137/314 (43%)

Query:     2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
             KRG AN V  LRM+EG E  ++EP  Q V AL SP +GIVD       LV   E++G  F
Sbjct:   148 KRGIANNVPDLRMIEGSEIQEIEPYCQGVMALHSPHTGIVD-----WGLV--TEHYGQDF 200

Query:    62 SNNTSVIGGHLEGNCMNVYISESKNLRNWD-GVSPLQPELTLIPKLVVNSAGLSAPALAK 120
                   I  +L+ N      +E+K   ++   +   +P  T+  K V+   GL +  LA+
Sbjct:   201 KQCGGDI--YLDFNVSK--FTETKEGTDYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAE 256

Query:   121 RF-IGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDGQIK 177
             +     D   +P     RG Y  L   K    K  IYP+P+     LGVH T  +DG I 
Sbjct:   257 KTGCPRDPRIVP----FRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIW 312

Query:   178 FGPDV---------EWID----GIDDTL---SFLNRFDYSVNANRAER----FY----PE 213
              GP+           W D     + D L    F+      +    +E     F       
Sbjct:   313 LGPNAVLALKREGYTWGDINLFELFDALRYPGFVKMASKYIGFGLSEMSKSWFINLQIKA 372

Query:   214 IRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID-FVIQGDDTHGVPG--LVNLFGIESPG 270
             ++KY PD+ +  +Q   AG+R +      + +D FV       G     +++     SPG
Sbjct:   373 LQKYIPDITEYDIQRGPAGVRAQAMDLDGNLVDDFVFDRGQGSGALAKRVLHCRNAPSPG 432

Query:   271 LTSSMAIAEYVAAK 284
              TSS+AIA+ +A K
Sbjct:   433 ATSSLAIAKMIADK 446

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|F1SHX9 L2HGDH "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 132 (51.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 55/188 (29%), Positives = 88/188 (46%)

Query:     2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
             +RG  NGV GLR+++  +  K EP  + + A+  P +GIVD   + LS   + +  G + 
Sbjct:   154 ERGLQNGVQGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVDYRQVALSFAQDFQEAGGSV 213

Query:    62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELTLIPKL----VVNSAGLSAP 116
               +  V          ++ +++    R+ DG+  P+    T   ++    VV  AGL + 
Sbjct:   214 LTSFEV---------EDIEMAKESPSRHKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYSD 264

Query:   117 ALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLD 173
              +++   G + N  I P    RG Y  L   K    K  IYP+P+     LGVH T  +D
Sbjct:   265 RISE-LSGCNPNPRIVPF---RGDYLLLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMD 320

Query:   174 GQIKFGPD 181
             G I  GP+
Sbjct:   321 GSIWLGPN 328

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0267656 l2hgdh "L-2-hydroxyglutarate dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
 Identities = 54/192 (28%), Positives = 89/192 (46%)

Query:     2 KRGTANGVHGLRMLEGFEAM-KMEPELQC-VKALLSPASGIVDSHSLMLSLVGE-AENHG 58
             KRG  NGV  +++LE  E +  +EP +   ++A+ +P++GI+D   +  S   +  E  G
Sbjct:   131 KRGIENGVPNIKLLESKEQLLSIEPFINGGLRAIHTPSTGIIDYKEVSKSFGNDITEKFG 190

Query:    59 TTFSNNTSVIGGHLEGNCMNV-YISESKNL--RNWDGVSPLQPELTLIPKLVVNSAGLSA 115
                 ++ S I   L  N  N  Y S  K L     D     + + +++ K  +   G+++
Sbjct:   191 ---KDSKSEI--KLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSIVCGGMNS 245

Query:   116 PALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI----YPIPEDGG--LGVHVT 169
               +AK   G D   I P    RG +          F+HLI    YP+P      LGVH T
Sbjct:   246 DRIAKVAYGNDEPSIVPF---RGSFLQFK----PEFRHLIKGNVYPLPNASFPFLGVHFT 298

Query:   170 LDLDGQIKFGPD 181
               ++G++  GP+
Sbjct:   299 KRINGEVWLGPN 310

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A7MBI3 L2HGDH "L-2-hydroxyglutarate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 132 (51.5 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
 Identities = 55/188 (29%), Positives = 86/188 (45%)

Query:     2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
             +RG  NGV GLR+++  +  K EP  + + A+  P +GIVD   +  S   + +  G + 
Sbjct:   154 ERGLQNGVQGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSV 213

Query:    62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELTLIPKL----VVNSAGLSAP 116
               N  V          ++ ++     R+ DG+  P+    T   ++    VV  AGL + 
Sbjct:   214 LTNFEV---------EDIEMARESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYSD 264

Query:   117 ALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLD 173
              +++   G + N  I P    RG Y  L   K    K  IYP+P+     LGVH T  +D
Sbjct:   265 RISE-LSGCNPNPRIVPF---RGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMD 320

Query:   174 GQIKFGPD 181
             G I  GP+
Sbjct:   321 GNIWLGPN 328

GO:0005739 "mitochondrion" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

UNIPROTKB|Q9KN19 VC_A0147 "Transcriptional regulator, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 123 (48.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
 Identities = 52/171 (30%), Positives = 81/171 (47%)

Query:    15 LEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLE 73
             L+  +    EP ++ + A+L  A+ IV+ + L+   + EA    G      T V+G  LE
Sbjct:   120 LDAAQLKLAEPNIRGLGAILVKATSIVN-YRLVTEKMAEAFMQLGGDVKIGTEVVG--LE 176

Query:    74 GNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPP 132
                 ++ ++ + KN R           ++   K +V  +GL A  L K  +GL   F   
Sbjct:   177 ETPSSITLTCQQKNQR-----------VSYQAKFLVTCSGLMADRLTK-MLGLPTDFQII 224

Query:   133 AYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPD 181
              Y  RG Y+ LA       +HLIYPIP+     LGVH+T  +DG +  GP+
Sbjct:   225 PY--RGEYYRLAPKHNQVVRHLIYPIPDPELPFLGVHLTRMIDGCVTVGPN 273

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TIGR_CMR|VC_A0147 VC_A0147 "transcriptional regulator, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 123 (48.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
 Identities = 52/171 (30%), Positives = 81/171 (47%)

Query:    15 LEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLE 73
             L+  +    EP ++ + A+L  A+ IV+ + L+   + EA    G      T V+G  LE
Sbjct:   120 LDAAQLKLAEPNIRGLGAILVKATSIVN-YRLVTEKMAEAFMQLGGDVKIGTEVVG--LE 176

Query:    74 GNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPP 132
                 ++ ++ + KN R           ++   K +V  +GL A  L K  +GL   F   
Sbjct:   177 ETPSSITLTCQQKNQR-----------VSYQAKFLVTCSGLMADRLTK-MLGLPTDFQII 224

Query:   133 AYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPD 181
              Y  RG Y+ LA       +HLIYPIP+     LGVH+T  +DG +  GP+
Sbjct:   225 PY--RGEYYRLAPKHNQVVRHLIYPIPDPELPFLGVHLTRMIDGCVTVGPN 273

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

RGD|1306250 L2hgdh "L-2-hydroxyglutarate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
 Identities = 53/188 (28%), Positives = 87/188 (46%)

Query:     2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
             +RG  NGV GLR+++  +  K EP  + + A+  P +GIV+   + LS   + +  G + 
Sbjct:   154 ERGLQNGVQGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVNYQQVALSFAQDFQEAGGSI 213

Query:    62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELT----LIPKLVVNSAGLSAP 116
               +  V          ++ I++    R+ DG+  P+  + +    +  + VV  AGL + 
Sbjct:   214 LKDFEV---------KDIGIAKEDPPRSKDGMKYPIAVKNSKGKEIQCRYVVTCAGLYSD 264

Query:   117 ALAKRF-IGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLD 173
              +++      D   +P     RG Y  L   K    K  IYP+P+     LGVH T  LD
Sbjct:   265 RISELSGCNPDPQIVP----FRGDYLVLKPEKGYLVKGNIYPVPDSRLPFLGVHFTPRLD 320

Query:   174 GQIKFGPD 181
             G I  GP+
Sbjct:   321 GSIWLGPN 328

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0044267 "cellular protein metabolic process" evidence=IEA;ISO

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VI.2345.1	hypothetical protein (392 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.2059.13.1	annotation not avaliable (156 aa)	•								0.621
	fgenesh4_pm.C_scaffold_44000008	glycerol kinase (EC-2.7.1.30) (519 aa)	•								0.563
	gw1.2233.1.1	Predicted protein (347 aa)	•								0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	4e-56
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	5e-26
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	1e-08
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	9e-06

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score =  186 bits (474), Expect = 4e-56
 Identities = 99/290 (34%), Positives = 135/290 (46%), Gaps = 32/290 (11%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHG 58
            +RG ANGV  L +L+  E  ++EP L    V ALL P+ GIVD   L  +L  EA+ +G
Sbjct: 108 YERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANG 167

Query: 59  TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118
                NT V G   + +   V++  + N            E TL  K V+N+AGL A  L
Sbjct: 168 VELRLNTEVTGIEKQSD--GVFVLNTSN-----------GEETLEAKFVINAAGLYADPL 214

Query: 119 AKRFIGLDNVF-IPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQ 175
           A+   G+   F I P    RG Y  L N   A  +H IYP+P  G  GLGVH T  +DG 
Sbjct: 215 AQM-AGIPEDFKIFP---VRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGS 270

Query: 176 IKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDL-RDGSLQPSYAGIR 234
           + FGP+               + D  V+ +  +       +  PDL    ++  +YAGIR
Sbjct: 271 LLFGPNALDS-------PKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGIR 323

Query: 235 PKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 284
           P L  PR   +DF+I           +N+ GI S GLT+  AIA  V   
Sbjct: 324 PILKEPRLPALDFIIPEA--KDEDWFINVAGIRSQGLTADPAIAGGVLEL 371

Length = 429

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score =  105 bits (264), Expect = 5e-26
 Identities = 75/312 (24%), Positives = 128/312 (41%), Gaps = 56/312 (17%)

Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           +R  ANG+  +  L+  E  + EP ++ + A+  P++GIVD  ++  ++    +  G   
Sbjct: 108 ERARANGIE-VERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARGGEI 166

Query: 62  SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR 121
                V             + E       +GV     +     + ++N AGL +  LA +
Sbjct: 167 RLGAEVTA-----------LDEHA-----NGVVVRTTQGEYEARTLINCAGLMSDRLA-K 209

Query: 122 FIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKF 178
             GL+ +  I P    RG Y+ LA  K     HLIYP+P+     LGVH+T  +DG +  
Sbjct: 210 MAGLEPDFRIVP---FRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTV 266

Query: 179 GP--------------DVEWIDGIDDTLSF-------LNRFDYSV----NANRAERFYPE 213
           GP              D    D + + L++          +   +    N+     +   
Sbjct: 267 GPNAVLAFKREGYRKRDFSLRD-LLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRL 325

Query: 214 IRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVIQGDDTHGVPGLVNLFGIESPGLT 272
           ++KY P L    LQP  AG+R +        + DF+         P  +++    SP  T
Sbjct: 326 VQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLF-----VETPRSLHVCNAPSPAAT 380

Query: 273 SSMAIAEYVAAK 284
           SS+ I E++ +K
Sbjct: 381 SSLPIGEHIVSK 392

Length = 393

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 57/278 (20%), Positives = 87/278 (31%), Gaps = 38/278 (13%)

Query: 10  HGLRMLEGFEAMKMEPEL---QCVKALLSPASGIVDSHSLMLSLVGEAENHG-TTFSNNT 65
               +L+  EA ++EP L        L  P  G +D   L  +L   AE  G       T
Sbjct: 119 EDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGT 178

Query: 66  SVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL 125
            V     +G  + V                     T+    VV +AG  A  LA     L
Sbjct: 179 PVTSLERDGRVVGVETDGG----------------TIEADKVVLAAGAWAGELAATLGEL 222

Query: 126 DNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWI 185
                 P    RG   +    +      L   +      G ++    DG+++ G   E  
Sbjct: 223 PL----PLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEG 278

Query: 186 DGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI 245
                  S   R D  +            R   P L D  ++ ++AG+RP  + P   P+
Sbjct: 279 GDDP---SDPEREDLVIAELLRV-----ARALLPGLADAGIEAAWAGLRP-PTTPDGLPV 329

Query: 246 DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA 283
                      +P L    G    G T + A+   +A 
Sbjct: 330 -----IGRAAPLPNLYVATGHGGHGFTLAPALGRLLAD 362

Length = 387

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQC--VKALLSPASGIVDSHSLMLSLVGEAENHG 58
                A G+  + +L+  E  ++EP L       L  P  G VD   L+ +L   AE  G
Sbjct: 103 AAALRALGL-PVELLDAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALG 161

Query: 59  TTFSNNTSVIGGHLEGNCMNV 79
                 T V G   EG  + V
Sbjct: 162 VEILEGTEVTGLEREGGGVTV 182

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	100.0
PRK11728	393	hydroxyglutarate oxidase; Provisional	100.0
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	100.0
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	100.0
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	100.0
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.98
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.97
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.97
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	99.97
COG0579	429	Predicted dehydrogenase [General function predicti	99.97
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.97
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.97
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.97
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	99.97
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.96
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.96
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.96
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.96
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.95
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.95
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.95
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.95
KOG2853	509	consensus Possible oxidoreductase [General functio	99.93
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.93
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.93
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.92
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.91
PRK05257	494	malate:quinone oxidoreductase; Validated	99.91
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.88
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	99.71
KOG2852	380	consensus Possible oxidoreductase [General functio	99.56
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.56
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.64
PLN02697	529	lycopene epsilon cyclase	98.35
PRK10157	428	putative oxidoreductase FixC; Provisional	98.3
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.29
PRK06185	407	hypothetical protein; Provisional	98.29
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.29
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.29
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.23
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.21
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.15
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.14
PLN02463	447	lycopene beta cyclase	98.03
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.99
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.96
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.93
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.92
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.92
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.91
PRK06847	375	hypothetical protein; Provisional	97.87
PRK10015	429	oxidoreductase; Provisional	97.78
COG2081	408	Predicted flavoproteins [General function predicti	97.75
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.7
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.69
PLN02612	567	phytoene desaturase	97.68
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.66
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.65
PRK07233	434	hypothetical protein; Provisional	97.63
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.61
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.57
PRK08244	493	hypothetical protein; Provisional	97.55
PRK09126	392	hypothetical protein; Provisional	97.47
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.46
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.42
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.42
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.39
PRK06834	488	hypothetical protein; Provisional	97.22
PRK06996	398	hypothetical protein; Provisional	97.11
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.1
PRK08163	396	salicylate hydroxylase; Provisional	97.03
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.02
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.9
PRK08132	547	FAD-dependent oxidoreductase; Provisional	96.89
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.86
PRK08013	400	oxidoreductase; Provisional	96.84
PRK11445	351	putative oxidoreductase; Provisional	96.83
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.83
PRK06126	545	hypothetical protein; Provisional	96.79
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	96.73
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.72
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.71
PLN02487	569	zeta-carotene desaturase	96.7
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.69
PRK08274	466	tricarballylate dehydrogenase; Validated	96.64
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.63
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.55
PRK06184	502	hypothetical protein; Provisional	96.54
PRK07588	391	hypothetical protein; Provisional	96.5
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.48
PRK07121	492	hypothetical protein; Validated	96.45
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.45
PRK07190	487	hypothetical protein; Provisional	96.43
PRK12839	572	hypothetical protein; Provisional	96.4
PRK07045	388	putative monooxygenase; Reviewed	96.36
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	96.35
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.31
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.31
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.26
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.23
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.2
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.18
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	96.15
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.11
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.09
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.05
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	95.94
PRK09897	534	hypothetical protein; Provisional	95.9
PRK08401	466	L-aspartate oxidase; Provisional	95.87
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.83
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	95.82
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.82
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.76
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.73
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.72
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	95.71
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.71
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.71
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	95.69
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.68
PRK14727	479	putative mercuric reductase; Provisional	95.62
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.58
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	95.57
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.54
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.54
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	95.53
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	95.53
PRK06175	433	L-aspartate oxidase; Provisional	95.51
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	95.51
PRK08071	510	L-aspartate oxidase; Provisional	95.43
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.43
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.42
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	95.41
PRK07512	513	L-aspartate oxidase; Provisional	95.41
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	95.4
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.36
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.26
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.25
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	95.25
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.25
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.21
PRK14694	468	putative mercuric reductase; Provisional	95.18
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	95.15
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.14
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	95.12
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.02
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	95.01
PRK06116	450	glutathione reductase; Validated	94.96
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	94.94
PLN02676	487	polyamine oxidase	94.94
PRK06475	400	salicylate hydroxylase; Provisional	94.93
PRK12416	463	protoporphyrinogen oxidase; Provisional	94.92
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	94.92
PRK07804	541	L-aspartate oxidase; Provisional	94.91
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.91
PRK05868	372	hypothetical protein; Validated	94.91
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	94.88
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	94.88
PRK08275	554	putative oxidoreductase; Provisional	94.86
PRK13977	576	myosin-cross-reactive antigen; Provisional	94.8
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	94.76
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	94.69
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	94.64
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	94.61
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	94.57
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	94.55
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.52
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.51
PRK06753	373	hypothetical protein; Provisional	94.5
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	94.46
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	94.43
PRK11883	451	protoporphyrinogen oxidase; Reviewed	94.34
PRK13748	561	putative mercuric reductase; Provisional	94.33
PLN02268	435	probable polyamine oxidase	94.31
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.29
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.27
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	94.22
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.17
PRK10262	321	thioredoxin reductase; Provisional	94.17
PLN02507	499	glutathione reductase	94.14
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	94.02
PRK07538	413	hypothetical protein; Provisional	93.97
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.95
PRK07236	386	hypothetical protein; Provisional	93.89
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	93.78
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	93.69
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.69
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.56
PRK07208	479	hypothetical protein; Provisional	93.48
PLN02985	514	squalene monooxygenase	93.39
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	93.37
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	93.33
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	93.27
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	93.16
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.07
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	92.91
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	92.89
PLN02568	539	polyamine oxidase	92.78
TIGR02053	463	MerA mercuric reductase. This model represents the	92.76
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	92.73
PLN02661	357	Putative thiazole synthesis	92.73
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.66
PRK09564	444	coenzyme A disulfide reductase; Reviewed	92.65
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	92.63
PRK06370	463	mercuric reductase; Validated	92.62
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	92.61
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	92.36
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	92.29
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	92.29
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	92.24
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.22
PRK09077	536	L-aspartate oxidase; Provisional	92.22
PRK07395	553	L-aspartate oxidase; Provisional	92.2
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.08
PTZ00052	499	thioredoxin reductase; Provisional	92.07
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	92.06
PLN02815	594	L-aspartate oxidase	91.84
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	91.81
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	91.62
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	91.6
PRK13512	438	coenzyme A disulfide reductase; Provisional	91.55
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	91.49
PRK07846	451	mycothione reductase; Reviewed	91.09
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	91.06
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	90.89
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	90.87
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	90.86
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	90.8
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	90.78
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	90.71
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	90.64
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	90.57
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	90.38
PLN02529	738	lysine-specific histone demethylase 1	90.36
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	90.14
PLN03000	881	amine oxidase	89.9
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	89.89
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	89.88
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	89.18
PTZ00058	561	glutathione reductase; Provisional	88.91
PLN02576	496	protoporphyrinogen oxidase	88.77
PRK14989	847	nitrite reductase subunit NirD; Provisional	88.7
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	88.35
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	87.97
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	87.94
PRK14989	847	nitrite reductase subunit NirD; Provisional	87.58
PLN02546	558	glutathione reductase	87.32
PRK07845	466	flavoprotein disulfide reductase; Reviewed	87.32
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	86.89
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	86.49
PRK13512	438	coenzyme A disulfide reductase; Provisional	86.49
PRK02106	560	choline dehydrogenase; Validated	86.04
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	85.87
PRK10262	321	thioredoxin reductase; Provisional	85.86
PLN02328	808	lysine-specific histone demethylase 1 homolog	85.74
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	85.63
PRK08294	634	phenol 2-monooxygenase; Provisional	85.36
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	84.95
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	84.53
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	84.01
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	83.62
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	83.45
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	83.09
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	82.59
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	82.49
PLN02976	1713	amine oxidase	82.4
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	81.97
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	81.63
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	81.47
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	81.24
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	81.15
PTZ00153	659	lipoamide dehydrogenase; Provisional	80.61
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	80.42
PLN02507	499	glutathione reductase	80.38

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=100.00  E-value=6.9e-34  Score=257.88  Aligned_cols=237  Identities=22%  Similarity=0.263  Sum_probs=194.7

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EE
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NV   79 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V   79 (287)
                      ..+..|++ +++|+++|+++++|.++  ..+|+|.|.+|++||.+++.+|++.|+++|++++++++|+++..++++| .|
T Consensus        95 ~~~~~~~~-~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v  173 (337)
T TIGR02352        95 LQSATGME-VEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAI  173 (337)
T ss_pred             HHHhcCCc-eEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEE
Confidence            35667886 99999999999999985  6799999999999999999999999999999999999999999887776 48


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCC
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP  159 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~  159 (287)
                      .|.+|                .++||+||+|+|+|+..|.+      .++.|    .+|+++.+...........+....
T Consensus       174 ~~~~g----------------~~~a~~vV~a~G~~~~~l~~------~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~  227 (337)
T TIGR02352       174 VTPSG----------------DVQADQVVLAAGAWAGELLP------LPLRP----VRGQPLRLEAPAVPLLNRPLRAVV  227 (337)
T ss_pred             EcCCC----------------EEECCEEEEcCChhhhhccc------CCccc----cCceEEEeeccccccCCcccceEE
Confidence            88888                89999999999999999864      34456    889998886541111111110000


Q ss_pred             CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079          160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG  239 (287)
Q Consensus       160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~  239 (287)
                        ...+.|++|..+|++++|++.+..           ..+...+++.++.+++.+.++||.+++.++.+.|+|+||+   
T Consensus       228 --~~~~~y~~p~~~g~~~iG~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~r~~---  291 (337)
T TIGR02352       228 --YGRRVYIVPRRDGRLVVGATMEES-----------GFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPG---  291 (337)
T ss_pred             --EcCCEEEEEcCCCeEEEEEecccc-----------CccCCCCHHHHHHHHHHHHHhCCCcccCcHHHheecCCCC---
Confidence              123478899888899999776532           2344456788999999999999999999999999999999   


Q ss_pred             CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                        ++|..|+||..+  ..+|+|+++|++|+|++++|++|+.+|++|+
T Consensus       292 --t~D~~piig~~~--~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~  334 (337)
T TIGR02352       292 --TPDNLPYIGEHP--EDRRLLIATGHYRNGILLAPATAEVIADLIL  334 (337)
T ss_pred             --CCCCCCEeCccC--CCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence              456788999987  5789999999999999999999999999986

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=100.00  E-value=3.1e-32  Score=253.03  Aligned_cols=251  Identities=27%  Similarity=0.400  Sum_probs=202.1

Q ss_pred             ccchhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe
Q 023079            2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI   81 (287)
Q Consensus         2 ~~~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t   81 (287)
                      +.++++|++ +++++++|+++++|.+...+|+|.|++|++||..++.+|.+.++++|++++++++|+++..+++++.|++
T Consensus       108 ~~~~~~g~~-~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~  186 (393)
T PRK11728        108 ERARANGIE-VERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRT  186 (393)
T ss_pred             HHHHHCCCc-EEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEE
Confidence            345678997 9999999999999998777999999999999999999999999999999999999999988877888888


Q ss_pred             cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCC-CCCcccCCccccceEEEEEcCCCCCCCCceeeeCCC
Q 023079           82 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG-LDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPE  160 (287)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~-~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~  160 (287)
                      .++                +++||+||+|+|+|+..++++++. .++++.|    .||+++.+.......+++.+|++|+
T Consensus       187 ~~g----------------~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p----~rGq~~~~~~~~~~~~~~~v~~~p~  246 (393)
T PRK11728        187 TQG----------------EYEARTLINCAGLMSDRLAKMAGLEPDFRIVP----FRGEYYRLAPEKNQLVNHLIYPVPD  246 (393)
T ss_pred             CCC----------------EEEeCEEEECCCcchHHHHHHhCCCCCCceEE----eeeEEEEeccccccccCCceecCCC
Confidence            877                799999999999999999998842 2344555    9999999975433346678888886


Q ss_pred             CC--CceeEEeeecCCcEEECCCccccCCcccccccccccccC-C---------------------ChhhHHHH------
Q 023079          161 DG--GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYS-V---------------------NANRAERF------  210 (287)
Q Consensus       161 ~~--~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~------  210 (287)
                      +.  +.++|++|..+|++++|++.......       +.++.. .                     +.+.++++      
T Consensus       247 ~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T PRK11728        247 PAFPFLGVHLTRMIDGSVTVGPNAVLAFKR-------EGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSK  319 (393)
T ss_pred             CCCCcceEEeecCCCCCEEECCCcceehhh-------cCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhH
Confidence            53  45789999999999999865432100       001100 0                     23344444      


Q ss_pred             ---HHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHH
Q 023079          211 ---YPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF  285 (287)
Q Consensus       211 ---~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i  285 (287)
                         ++.+.+++|.|.+.++.+.|+|+||....+ +.+-.||+|...     ++.+++.|..|+|+|.||+||++|++++
T Consensus       320 ~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~-----~~~~~~~~~~spg~t~s~~ia~~v~~~~  393 (393)
T PRK11728        320 SGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVET-----PRSLHVCNAPSPAATSSLPIGEHIVSKV  393 (393)
T ss_pred             HHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecC-----CCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence               599999999999999999999999943222 456678988654     5899999999999999999999999864

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=100.00  E-value=1.8e-31  Score=256.06  Aligned_cols=250  Identities=24%  Similarity=0.343  Sum_probs=195.0

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EE
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NV   79 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V   79 (287)
                      .++.+|++ +++|+++|+.+++|.++  ..+|+++| +|++||.+++.++++.|.++|++|+++++|+++..+++++ .|
T Consensus        87 ~~~~~gi~-~~~l~~~e~~~~~P~l~~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv  164 (516)
T TIGR03377        87 ACREAGIP-AEEIDPAEALRLEPNLNPDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGV  164 (516)
T ss_pred             HHHHCCCC-ceEECHHHHHHHCCCCChhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEE
Confidence            45778997 99999999999999996  67899999 5899999999999999999999999999999999887765 35


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCC
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP  159 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~  159 (287)
                      ++.+..+          +...+|+|++||||||+|+..|++++ +.++++.|    .||++++++....   +..+..++
T Consensus       165 ~v~~~~~----------g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~~i~p----~kG~~lv~~~~~~---~~~~~~~~  226 (516)
T TIGR03377       165 KVEDHKT----------GEEERIEAQVVINAAGIWAGRIAEYA-GLDIRMFP----AKGALLIMNHRIN---NTVINRCR  226 (516)
T ss_pred             EEEEcCC----------CcEEEEEcCEEEECCCcchHHHHHhc-CCCCceec----ceEEEEEECCccc---cccccccc
Confidence            5432110          11347999999999999999999988 45666666    9999999975421   12222222


Q ss_pred             CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079          160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG  239 (287)
Q Consensus       160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~  239 (287)
                      .+ ..+.+++| .++.+++|++.+..+         ++.++.++++.++.+++.++++||.|...++++.|+|+||.+.+
T Consensus       227 ~~-~~g~~~~P-~~~~~liGtT~~~~~---------~~~~~~~~~~~v~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~  295 (516)
T TIGR03377       227 KP-SDADILVP-GDTISIIGTTSERID---------DPDDLPVTQEEVDVLLREGAKLAPMLAQTRILRAFAGVRPLVAV  295 (516)
T ss_pred             CC-CCCcEEEE-CCCeEEEecCCCCCC---------CCCCCCCCHHHHHHHHHHHHHhCcccccCCEEEEEeecccccCC
Confidence            22 23466788 478899999887543         34466778899999999999999999999999999999998765


Q ss_pred             CCC-----CCCCe-EEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          240 PRQ-----SPIDF-VIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       240 ~~~-----~~~~~-~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ++.     ..++| +++....++.+|++.++|.   ++|+++++|+.+++++.
T Consensus       296 ~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GG---kltt~r~~Ae~~~d~~~  345 (516)
T TIGR03377       296 DDDPSGRNISRGIVLLDHAERDGLPGFITITGG---KLTTYRLMAEWATDVVC  345 (516)
T ss_pred             CCCCCccccCCCeEEeecccccCCCCeEEEecc---hHHHHHHHHHHHHHHHH
Confidence            311     12466 5564322367899999983   69999999999999875

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=100.00  E-value=5.5e-31  Score=245.61  Aligned_cols=239  Identities=17%  Similarity=0.165  Sum_probs=192.2

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc--------cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ--------CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-   73 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--------~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-   73 (287)
                      ..++.|++ +++|+++|+++++|.++        ..+|+|.+.+|++||..++.+|++.|.++|++++++++|+++... 
T Consensus       135 ~~~~~g~~-~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~  213 (407)
T TIGR01373       135 AMRLNGVD-AELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRD  213 (407)
T ss_pred             HHHHcCCC-eEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence            35678997 99999999999999885        358999999999999999999999999999999999999999764 


Q ss_pred             CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCC
Q 023079           74 GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFK  152 (287)
Q Consensus        74 ~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~  152 (287)
                      ++.+ .|+|++|                +++|++||+|||+|+..+.+++ +..+++.|    .++++++.++.. ...+
T Consensus       214 ~~~~~~v~t~~g----------------~i~a~~vVvaagg~~~~l~~~~-g~~~~~~~----~~~~~~~~~~~~-~~~~  271 (407)
T TIGR01373       214 GGRVIGVETTRG----------------FIGAKKVGVAVAGHSSVVAAMA-GFRLPIES----HPLQALVSEPLK-PIID  271 (407)
T ss_pred             CCcEEEEEeCCc----------------eEECCEEEECCChhhHHHHHHc-CCCCCcCc----ccceEEEecCCC-CCcC
Confidence            4554 5888888                8999999999999999998877 45555555    777776655321 1122


Q ss_pred             ceeeeCCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccc
Q 023079          153 HLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAG  232 (287)
Q Consensus       153 ~~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G  232 (287)
                      ..+..    ...++|++|..+|++++|.+.+...          .++...+.+..+.+++.+.++||.+.+.++.+.|+|
T Consensus       272 ~~~~~----~~~~~y~~p~~~g~~~ig~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G  337 (407)
T TIGR01373       272 TVVMS----NAVHFYVSQSDKGELVIGGGIDGYN----------SYAQRGNLPTLEHVLAAILEMFPILSRVRMLRSWGG  337 (407)
T ss_pred             CeEEe----CCCceEEEEcCCceEEEecCCCCCC----------ccCcCCCHHHHHHHHHHHHHhCCCcCCCCeEEEecc
Confidence            22211    1234788998889999997643211          122233556788999999999999999999999999


Q ss_pred             ccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          233 IRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       233 ~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +||+     ++|..|+||+.+   .+|+|+++|++|+|++++|++|+++|++|+
T Consensus       338 ~~~~-----t~D~~PiIg~~~---~~gl~~a~G~~g~G~~~ap~~G~~la~li~  383 (407)
T TIGR01373       338 IVDV-----TPDGSPIIGKTP---LPNLYLNCGWGTGGFKATPASGTVFAHTLA  383 (407)
T ss_pred             cccc-----CCCCCceeCCCC---CCCeEEEeccCCcchhhchHHHHHHHHHHh
Confidence            9999     457788999986   489999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=100.00  E-value=3.9e-31  Score=247.05  Aligned_cols=239  Identities=22%  Similarity=0.265  Sum_probs=189.9

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc-----cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ-----CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM   77 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~-----~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~   77 (287)
                      ..+++|++ +++|+++|+++++|.+.     ..+|+|.|++|++||..++.+|++.++++|++|+++++|++++.+++++
T Consensus       156 ~~~~~g~~-~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~  234 (416)
T PRK00711        156 VLEEAGVP-YELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRI  234 (416)
T ss_pred             HHHHcCCC-ceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEE
Confidence            45678997 99999999999999873     4689999999999999999999999999999999999999998887776


Q ss_pred             -EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee
Q 023079           78 -NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY  156 (287)
Q Consensus        78 -~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~  156 (287)
                       .|+|+++                +++||+||+|+|+|+..+++.+ +.+.++.|    .+++++.+......  ...+.
T Consensus       235 ~~v~t~~~----------------~~~a~~VV~a~G~~~~~l~~~~-g~~~pi~p----~rg~~~~~~~~~~~--~~p~~  291 (416)
T PRK00711        235 TGVQTGGG----------------VITADAYVVALGSYSTALLKPL-GVDIPVYP----LKGYSLTVPITDED--RAPVS  291 (416)
T ss_pred             EEEEeCCc----------------EEeCCEEEECCCcchHHHHHHh-CCCcccCC----ccceEEEEecCCCC--CCCce
Confidence             4788776                7999999999999999999887 55666666    88887765322111  11111


Q ss_pred             eCCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccce
Q 023079          157 PIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPK  236 (287)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~  236 (287)
                      ...+. .. .+..+..+|++++|++.+..           ..+...+.+..+.+.+.+.++||.+.+.++.+.|+|+|++
T Consensus       292 ~~~~~-~~-~~~~~~~~~~~~iG~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~  358 (416)
T PRK00711        292 TVLDE-TY-KIAITRFDDRIRVGGMAEIV-----------GFDLRLDPARRETLEMVVRDLFPGGGDLSQATFWTGLRPM  358 (416)
T ss_pred             eEEec-cc-CEEEeecCCceEEEEEEEec-----------CCCCCCCHHHHHHHHHHHHHHCCCcccccccceeeccCCC
Confidence            11111 12 22334457889999754432           2233455677888899999999999988999999999998


Q ss_pred             ecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          237 LSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                           ++|..|+||..+   .+|+|+++|++|+||+++|++|+++|++|+
T Consensus       359 -----t~D~~PiIG~~~---~~gl~~a~G~~g~G~~~ap~~g~~la~li~  400 (416)
T PRK00711        359 -----TPDGTPIVGATR---YKNLWLNTGHGTLGWTMACGSGQLLADLIS  400 (416)
T ss_pred             -----CCCCCCEeCCcC---CCCEEEecCCchhhhhhhhhHHHHHHHHHc
Confidence                 456778999875   489999999999999999999999999985

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.98  E-value=1.8e-30  Score=242.28  Aligned_cols=247  Identities=20%  Similarity=0.255  Sum_probs=186.7

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEE
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVY   80 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~   80 (287)
                      ..++.|++ +++|+++|+++++|.+.  ..+|+|+|++|++||.+++.+|.+.|+++|++|+++++|+++...++.|.|.
T Consensus       155 ~~~~~g~~-~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~  233 (410)
T PRK12409        155 LLAEGGLE-RRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLT  233 (410)
T ss_pred             HHHhcCCC-eEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEE
Confidence            45677896 99999999999999985  5789999999999999999999999999999999999999998877777765


Q ss_pred             ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCC-CCceeeeCC
Q 023079           81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAP-FKHLIYPIP  159 (287)
Q Consensus        81 t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~-~~~~i~~~~  159 (287)
                      +.++..          .+..+++|++||+|+|+|+..+++++ +..+++.|    .+|+++.+....... .....+...
T Consensus       234 ~~~~~~----------~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~i~p----~~g~~~~~~~~~~~~~~~~p~~~~~  298 (410)
T PRK12409        234 VQPSAE----------HPSRTLEFDGVVVCAGVGSRALAAML-GDRVNVYP----VKGYSITVNLDDEASRAAAPWVSLL  298 (410)
T ss_pred             EEcCCC----------CccceEecCEEEECCCcChHHHHHHh-CCCCcccc----CCceEEEeecCCccccccCCceeee
Confidence            543310          00126999999999999999999887 45556666    899887764321100 000001111


Q ss_pred             CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079          160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG  239 (287)
Q Consensus       160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~  239 (287)
                      +.... +...+..+|++++|++.++.           ..+...+.+.++.+++.+.++||.|++..+. .|+|+|++   
T Consensus       299 ~~~~~-~~~~~~~~~~~~igg~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~-~w~G~r~~---  362 (410)
T PRK12409        299 DDSAK-IVTSRLGADRFRVAGTAEFN-----------GYNRDIRADRIRPLVDWVRRNFPDVSTRRVV-PWAGLRPM---  362 (410)
T ss_pred             ecCCc-EEEEecCCCcEEEEEEEEec-----------CCCCCCCHHHHHHHHHHHHHhCCCCCccccc-eecccCCC---
Confidence            11111 22223345778888765532           2233455678899999999999999988766 69999998   


Q ss_pred             CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                        ++|..|+||+.+   .+|+|+++|++|+|+++||++|+++|++|.
T Consensus       363 --t~D~~PiiG~~~---~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~  404 (410)
T PRK12409        363 --MPNMMPRVGRGR---RPGVFYNTGHGHLGWTLSAATADLVAQVVA  404 (410)
T ss_pred             --CCCCCCeeCCCC---CCCEEEecCCcccchhhcccHHHHHHHHHc
Confidence              456778999864   589999999999999999999999999985

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.97  E-value=2.2e-30  Score=238.72  Aligned_cols=246  Identities=17%  Similarity=0.185  Sum_probs=191.0

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEE
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNV   79 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V   79 (287)
                      ..++.|++ +++++++++++++|.++   ..+|+|.|++|++||.+++.++++.+.++|++++++++|+++..+++.+.|
T Consensus       106 ~~~~~g~~-~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  184 (376)
T PRK11259        106 SARQHGLP-HEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTV  184 (376)
T ss_pred             HHHHcCCC-cEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEE
Confidence            35678897 99999999999999885   467999999999999999999999999999999999999999998888889


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC--CCCceeee
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA--PFKHLIYP  157 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~--~~~~~i~~  157 (287)
                      +|++|                .++||+||+|+|+|+..+++++   ..++.|    .+++++.+++....  ..+...+.
T Consensus       185 ~~~~g----------------~~~a~~vV~A~G~~~~~l~~~~---~~~i~~----~~~~~~~~~~~~~~~~~~~~p~~~  241 (376)
T PRK11259        185 TTADG----------------TYEAKKLVVSAGAWVKDLLPPL---ELPLTP----VRQVLAWFQADGRYSEPNRFPAFI  241 (376)
T ss_pred             EeCCC----------------EEEeeEEEEecCcchhhhcccc---cCCceE----EEEEEEEEecCCccCCccCCCEEE
Confidence            99888                7999999999999999988654   344455    88888888653111  11111111


Q ss_pred             CCCCCCceeEEeeecCCc-EEECCCccccCCccccccccccc-ccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccc
Q 023079          158 IPEDGGLGVHVTLDLDGQ-IKFGPDVEWIDGIDDTLSFLNRF-DYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP  235 (287)
Q Consensus       158 ~~~~~~~~~~~~~~~~g~-l~iG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~  235 (287)
                      .....+..+|++|..+++ +++|++....... +    ++.. .....++..+.+.+.+.++||.+..  +.+.|+|.|+
T Consensus       242 ~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~-~----~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~  314 (376)
T PRK11259        242 WEVPDGDQYYGFPAENGPGLKIGKHNGGQEIT-S----PDERDRFVTVAEDGAELRPFLRNYLPGVGP--CLRGAACTYT  314 (376)
T ss_pred             EecCCCceeEeccCCCCCceEEEECCCCCCCC-C----hhhccCCCCcHHHHHHHHHHHHHHCCCCCc--cccceEEecc
Confidence            111113336778887888 9998765411000 0    0111 1122255688999999999998876  8888999999


Q ss_pred             eecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          236 KLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       236 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      .     ++|..|+||..+  +.+|+|+++|++|+|+|++|++|+++|++|+
T Consensus       315 ~-----t~D~~P~ig~~~--~~~gl~~~~G~~g~G~~~ap~~g~~la~li~  358 (376)
T PRK11259        315 N-----TPDEHFIIDTLP--GHPNVLVASGCSGHGFKFASVLGEILADLAQ  358 (376)
T ss_pred             c-----CCCCCceeecCC--CCCCEEEEecccchhhhccHHHHHHHHHHHh
Confidence            7     457788999987  6899999999999999999999999999986

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.97  E-value=4.2e-30  Score=247.62  Aligned_cols=253  Identities=20%  Similarity=0.285  Sum_probs=193.6

Q ss_pred             ccchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-E
Q 023079            2 KRGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-N   78 (287)
Q Consensus         2 ~~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~   78 (287)
                      +.++++|++ +++|+++|+.+++|.++  ..+|+++| +|++||.+++.+++..|.++|++++++++|+++.++++++ .
T Consensus       107 ~~~~~~Gi~-~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~g  184 (546)
T PRK11101        107 RACEEAGIE-AEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCG  184 (546)
T ss_pred             HHHHHcCCC-cEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEE
Confidence            345778997 99999999999999996  67999999 5899999999999999999999999999999999887765 3


Q ss_pred             EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeC
Q 023079           79 VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPI  158 (287)
Q Consensus        79 V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~  158 (287)
                      |++.+..+          ++..+|+|++||||||+|+.+|+++. +.+.++.|    +||++++++....   ..+++.+
T Consensus       185 v~v~d~~~----------g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~~i~p----~kG~~lv~~~~~~---~~vi~~~  246 (546)
T PRK11101        185 VRVRDHLT----------GETQEIHAPVVVNAAGIWGQHIAEYA-DLRIRMFP----AKGSLLIMDHRIN---NHVINRC  246 (546)
T ss_pred             EEEEEcCC----------CcEEEEECCEEEECCChhHHHHHHhc-CCCCceee----cceEEEEECCccC---ceeEecc
Confidence            55432211          11247999999999999999999988 55666666    9999999976421   1233333


Q ss_pred             CCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceec
Q 023079          159 PEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLS  238 (287)
Q Consensus       159 ~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~  238 (287)
                      +.+... .++.| .++.+++|+|.+..+.       .+..+..++++.++.+++.+.+++|.|...++++.|+|+||+..
T Consensus       247 ~~~~~~-~~~vp-~~~~~liGtT~~~~~~-------~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~  317 (546)
T PRK11101        247 RKPADA-DILVP-GDTISLIGTTSTRIDY-------DQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRPLVA  317 (546)
T ss_pred             CCCCCC-CEEEe-cCCEEEEeeCCCCccC-------CCcCCCCCCHHHHHHHHHHHHHhCCCCCccCEEEEEEEeccCCC
Confidence            332222 34555 4677899998765321       02234677889999999999999999999999999999999864


Q ss_pred             CCCCC-----CC-CeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          239 GPRQS-----PI-DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       239 ~~~~~-----~~-~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +++.+     .+ .++++..+.++.+|++.++|.   ++|+++++|+.++|++.
T Consensus       318 ~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GG---kltt~r~~Ae~v~d~v~  368 (546)
T PRK11101        318 SDDDPSGRNVSRGIVLLDHAERDGLDGFITITGG---KLMTYRLMAEWATDAVC  368 (546)
T ss_pred             CCCCCcccccCCCeEEeecccccCCCCeEEEECC---hHHHHHHHHHHHHHHHH
Confidence            32111     12 357775432257899999983   79999999999999875

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=99.97  E-value=5e-31  Score=243.94  Aligned_cols=234  Identities=21%  Similarity=0.207  Sum_probs=188.5

Q ss_pred             hhcCCC--eeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec
Q 023079            5 TANGVH--GLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS   82 (287)
Q Consensus         5 ~~~g~~--~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~   82 (287)
                      ++.+++  .+++++.+|+++++|.....+|+|.|++|++||..++.+|++++++ |++|+++++|++++.++++|.|+|.
T Consensus        94 ~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~  172 (381)
T TIGR03197        94 EQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDA  172 (381)
T ss_pred             HhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeC
Confidence            334553  1468999999999875446789999999999999999999999999 9999999999999988888999998


Q ss_pred             CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCC-CCCCceeeeCCCC
Q 023079           83 ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKV-APFKHLIYPIPED  161 (287)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~  161 (287)
                      +|.               .++||+||+|+|+|+..+.+++   .+++.|    .+|+++.+..... ..++..+      
T Consensus       173 ~g~---------------~~~a~~vV~a~G~~~~~l~~~~---~~pi~p----~rg~~~~~~~~~~~~~~~~~~------  224 (381)
T TIGR03197       173 NGE---------------VIAASVVVLANGAQAGQLAQTA---HLPLRP----VRGQVSHLPATEALSALKTVL------  224 (381)
T ss_pred             CCC---------------EEEcCEEEEcCCcccccccccc---cCCccc----cccceeeccCCCcccccCceE------
Confidence            882               4899999999999999987653   445566    9999988865311 0111111      


Q ss_pred             CCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCC-----CCCcccccccccce
Q 023079          162 GGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR-----DGSLQPSYAGIRPK  236 (287)
Q Consensus       162 ~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~~~G~r~~  236 (287)
                       ..+.|++|..+|++++|.+.+...           .+...+.+..+.+++.+.++||.+.     +.++.+.|+|+||.
T Consensus       225 -~~~~y~~p~~~g~~~iG~t~~~~~-----------~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~  292 (381)
T TIGR03197       225 -CYDGYLTPANNGEHCIGASYDRND-----------DDLALREADHAENLERLAECLPALAWASEVDISALQGRVGVRCA  292 (381)
T ss_pred             -eCCceecccCCCceEeecccCCCC-----------CCCCcCHHHHHHHHHHHHHhCcccchhhccCccccCceEEEecc
Confidence             122588898889999997765421           2334456678899999999999997     78899999999998


Q ss_pred             ecCCCCCCCCeEEecCCCCC-------------------------CCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          237 LSGPRQSPIDFVIQGDDTHG-------------------------VPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~~~-------------------------~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +     +|..|+||..+  +                         .+|+|+++|++|+||+++|++|+++|++|+
T Consensus       293 t-----~D~~Piig~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~  360 (381)
T TIGR03197       293 S-----PDHLPLVGAVP--DFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQIC  360 (381)
T ss_pred             C-----CCcCccCCCCC--CHHHHHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHh
Confidence            4     56667999876  5                         789999999999999999999999999985

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.97  E-value=4.6e-30  Score=236.23  Aligned_cols=258  Identities=37%  Similarity=0.520  Sum_probs=220.6

Q ss_pred             CccchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E
Q 023079            1 MKRGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M   77 (287)
Q Consensus         1 ~~~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~   77 (287)
                      |++++++|+.+.+.+|++++++++|.+.  ..+|+|.|..|.|||..++.+|++.|+++|++++.+++|++|++.+++ +
T Consensus       108 ~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~  187 (429)
T COG0579         108 YERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVF  187 (429)
T ss_pred             HHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceE
Confidence            5788999998899999999999999998  899999999999999999999999999999999999999999998884 5


Q ss_pred             EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC-CcccCCccccceEEEEEcCCCCCCCCceee
Q 023079           78 NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIY  156 (287)
Q Consensus        78 ~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~  156 (287)
                      .+.|.+|.             + +++|+.||||||.+|..|+++.+... ....|    ++|+|+++++.....+++.+|
T Consensus       188 ~~~~~~g~-------------~-~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P----~~G~y~~~~~~~~~~~~~~Iy  249 (429)
T COG0579         188 VLNTSNGE-------------E-TLEAKFVINAAGLYADPLAQMAGIPEDFKIFP----VRGEYLVLDNEVKALLRHKIY  249 (429)
T ss_pred             EEEecCCc-------------E-EEEeeEEEECCchhHHHHHHHhCCCcccccCc----cceEEEEEcccccccccceee
Confidence            67888882             1 29999999999999999999996333 56677    999999998854456789999


Q ss_pred             eCCCCC--CceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCC-CCCcccccccc
Q 023079          157 PIPEDG--GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR-DGSLQPSYAGI  233 (287)
Q Consensus       157 ~~~~~~--~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-~~~i~~~~~G~  233 (287)
                      ++|++.  +.|++++++.||++++||++.+.+-.       +..+...+.+..+.+.....+++|++. .......++|.
T Consensus       250 ~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~-------~k~~~~~~~d~~d~v~~~~~~~~~~~~~~~~~~~~y~~~  322 (429)
T COG0579         250 PVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKF-------LKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGI  322 (429)
T ss_pred             cCCCCCCCCCcceeecccCCeEEECCCcccchhh-------hccccccccchhhhHHHhhhhhcccccccccchhhhhee
Confidence            999987  78999999999999999999876211       223456677888889999999999998 66778889999


Q ss_pred             cceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHH
Q 023079          234 RPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF  285 (287)
Q Consensus       234 r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i  285 (287)
                      ||+...+..+..+|++....  ..++.+...|.-+.|+|.+|++++.+.+++
T Consensus       323 r~~~~~~~~~~~~~~ip~~~--~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~  372 (429)
T COG0579         323 RPILKEPRLPALDFIIPEAK--DEDWFINVAGIRSQGLTADPAIAGGVLELL  372 (429)
T ss_pred             ccccccccccccceeccccc--CCCCceeeeeEEccccccChhHhhhHhhhc
Confidence            99874434556788887554  678999999999999999999999888765

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.97  E-value=6.9e-30  Score=241.85  Aligned_cols=246  Identities=14%  Similarity=0.111  Sum_probs=183.8

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE   83 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~   83 (287)
                      .++.|++.+++|+++|+.+++|.....+|+|+|++|++||.+++.+|++.|+++|++|+++++|++++. ++.+.|+|++
T Consensus       143 ~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~  221 (460)
T TIGR03329       143 LERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPD  221 (460)
T ss_pred             HHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCC
Confidence            456787536999999999999965567899999999999999999999999999999999999999975 5567889988


Q ss_pred             CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeee----CC
Q 023079           84 SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYP----IP  159 (287)
Q Consensus        84 g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~----~~  159 (287)
                      |                +++||+||+|+|+|+..+++.++   ..+.|    .+++++++.+. ...+....++    +.
T Consensus       222 g----------------~v~A~~VV~Atga~s~~l~~~~~---~~~~p----~~~~~~~t~pl-~~~~~~~~~~~~~~~~  277 (460)
T TIGR03329       222 G----------------QVTADKVVLALNAWMASHFPQFE---RSIAI----VSSDMVITEPA-PDLLAATGLDHGTSVL  277 (460)
T ss_pred             c----------------EEECCEEEEcccccccccChhhc---CeEEE----eccceEecCCC-cHHHHhhcCCCCceEe
Confidence            8                89999999999999999887662   22334    55666555432 1111111111    11


Q ss_pred             CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079          160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG  239 (287)
Q Consensus       160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~  239 (287)
                      +......|+++..+|++++|...........    .++ .........+.+.+.+.++||.|.+..+.+.|+|.+++   
T Consensus       278 d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~---  349 (460)
T TIGR03329       278 DSRIFVHYYRSTPDGRLMLGKGGNTFAYGGR----MLP-VFNQPSPYEALLTRSLRKFFPALAEVPIAASWNGPSDR---  349 (460)
T ss_pred             cchhhhhheeECCCCcEEEcCCccccccCcc----ccc-ccCCchHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCC---
Confidence            1111225788888899999864321110000    000 01112234567899999999999999999999999998   


Q ss_pred             CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                        ++|..|+||+.+  ..+|+|+++|++|+|++++|++|+++|++|+
T Consensus       350 --t~D~~P~iG~~~--~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~  392 (460)
T TIGR03329       350 --SVTGLPFFGRLN--GQPNVFYGFGYSGNGVAPSRMGGQILSSLVL  392 (460)
T ss_pred             --CCCCCceeeeec--CCCCEEEEeCcCCCChhHHHHHHHHHHHHhc
Confidence              456778999886  5789999999999999999999999999875

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.97  E-value=7.6e-29  Score=228.84  Aligned_cols=249  Identities=14%  Similarity=0.127  Sum_probs=186.5

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEE
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNV   79 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V   79 (287)
                      ..++.|++ +++|+++|+.+++|.++   ..+|+|.|.+|++||.+++.+|.+.++++|++++++++|+++..+++.+.|
T Consensus       102 ~~~~~g~~-~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v  180 (380)
T TIGR01377       102 TLSRHGLE-HELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTV  180 (380)
T ss_pred             HHHHcCCC-eEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEE
Confidence            45678997 99999999999999985   456999999999999999999999999999999999999999988888888


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCC-CceeeeC
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPF-KHLIYPI  158 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~-~~~i~~~  158 (287)
                      +|.++                +++||+||+|+|.|+..+.+++ +..+++.|    .+++...+........ .+..+|.
T Consensus       181 ~~~~~----------------~i~a~~vV~aaG~~~~~l~~~~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~  239 (380)
T TIGR01377       181 KTTKG----------------SYQANKLVVTAGAWTSKLLSPL-GIEIPLQP----LRINVCYWREKEPGSYGVSQAFPC  239 (380)
T ss_pred             EeCCC----------------EEEeCEEEEecCcchHHHhhhc-ccCCCceE----EEEEEEEEecCCccccCccCCCCE
Confidence            88777                7999999999999999999888 45555555    7777655543211100 0000111


Q ss_pred             C--CCCCceeEEeeecCC-cEEECCCcc-ccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccccc
Q 023079          159 P--EDGGLGVHVTLDLDG-QIKFGPDVE-WIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIR  234 (287)
Q Consensus       159 ~--~~~~~~~~~~~~~~g-~l~iG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r  234 (287)
                      .  .....++|++|..++ .+++|.... ....+.     ....+...+...++.+.+.+.+++|.+.... ...|+|.|
T Consensus       240 ~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~  313 (380)
T TIGR01377       240 FLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPD-----ERDCPFGADIEDVQILRKFVRDHLPGLNGEP-KKGEVCMY  313 (380)
T ss_pred             EEEeCCCCceEecCCCCCCceEEEEeCCCCccCcc-----cccCCCCCCHHHHHHHHHHHHHHCCCCCCCc-ceeeEEEe
Confidence            0  011223777777543 455553221 100000     0111223556778999999999999998644 56789999


Q ss_pred             ceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          235 PKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       235 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +.     +||..|+||+.+  +.+|+|+++|++|+|||++|++|+++||+|.
T Consensus       314 ~~-----t~D~~piIg~~p--~~~~l~va~G~~g~G~~~~p~~g~~la~li~  358 (380)
T TIGR01377       314 TN-----TPDEHFVIDLHP--KYDNVVIGAGFSGHGFKLAPVVGKILAELAM  358 (380)
T ss_pred             cc-----CCCCCeeeecCC--CCCCEEEEecCCccceeccHHHHHHHHHHHh
Confidence            87     467788999998  6899999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.97  E-value=3.3e-30  Score=234.39  Aligned_cols=249  Identities=25%  Similarity=0.305  Sum_probs=192.4

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-E
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-V   79 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V   79 (287)
                      ..+..+++ +++++++++.+++|.+.  ...|++.|++|++||.+++.+|.+.++++|++|+++++|+++..++++|. |
T Consensus       105 ~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv  183 (358)
T PF01266_consen  105 RLRRNGIP-YELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGV  183 (358)
T ss_dssp             HHHHTTTT-EEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEE
T ss_pred             cccccccc-ccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccc
Confidence            45678886 99999999999999986  57899999999999999999999999999999999999999999999998 9


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCC
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP  159 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~  159 (287)
                      .|++|                +++||+||||+|+|+..|++++ +.+.++.|    .+++++.+..... .....+...+
T Consensus       184 ~~~~g----------------~i~ad~vV~a~G~~s~~l~~~~-~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~  241 (358)
T PF01266_consen  184 RTSDG----------------EIRADRVVLAAGAWSPQLLPLL-GLDLPLRP----VRGQVLVLEPPES-PLAPAILFPP  241 (358)
T ss_dssp             EETTE----------------EEEECEEEE--GGGHHHHHHTT-TTSSTEEE----EEEEEEEEEGCCS-GSSSEEEEEE
T ss_pred             ccccc----------------ccccceeEecccccceeeeecc-cccccccc----cceEEEEEccCCc-cccccccccc
Confidence            99999                7999999999999999999888 44444455    8999999876422 2222222211


Q ss_pred             --CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccccccee
Q 023079          160 --EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKL  237 (287)
Q Consensus       160 --~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~  237 (287)
                        .....+.+++|.. |.+++|+............. ....+...+.+ ++.+++.+.+++|.+.+.++.+.|+|+||++
T Consensus       242 ~~~~~~~~~~~~p~~-g~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t  318 (358)
T PF01266_consen  242 VIFGPSDGVYIRPRP-GGVLIGTADGNYDPGPSPED-SSGEDPDVDEE-IDELLERLARLLPGLGDAEVVRSWAGIRPFT  318 (358)
T ss_dssp             ECESSCTEEEEEEET-TEEEEEESECEEEESSSHHH-HSHHHHHHHHH-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEE
T ss_pred             ccccccccceecccc-cccccccccccccccccccc-cccccccccHH-HHHhHHHHHHHHHHhhhccccccccceeeec
Confidence              1123557888887 88888843321110000000 00111122334 7899999999999999999999999999995


Q ss_pred             cCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHH
Q 023079          238 SGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK  284 (287)
Q Consensus       238 ~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~  284 (287)
                           ++..++|++.+  ..+|+|+++|++|+|++++|++|+++||+
T Consensus       319 -----~d~~p~ig~~~--~~~~l~~~~g~~~~G~~~a~~~a~~~a~~  358 (358)
T PF01266_consen  319 -----PDGRPIIGELP--GSPNLYLAGGHGGHGFTLAPGLAELLADL  358 (358)
T ss_dssp             -----TTSECEEEEES--SEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred             -----cCCCeeeeecC--CCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence                 45668999976  67899999999999999999999999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=99.97  E-value=1.3e-29  Score=219.28  Aligned_cols=270  Identities=40%  Similarity=0.532  Sum_probs=224.3

Q ss_pred             CccchhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe---E
Q 023079            1 MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC---M   77 (287)
Q Consensus         1 ~~~~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~---~   77 (287)
                      |+++.++|+++.++++..|+.+++|..+...|+++|..|++|-..++.++.+..+..|.++.++-++.++....+.   +
T Consensus       153 ~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Y  232 (453)
T KOG2665|consen  153 MHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSY  232 (453)
T ss_pred             HHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999876543   3


Q ss_pred             EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC-CCCCcccCCccccceEEEEEcCCCCCCCCceee
Q 023079           78 NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI-GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY  156 (287)
Q Consensus        78 ~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~-~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~  156 (287)
                      .++..+|. +|            +++...||-|+|..++.+.+..+ ..++.++|    ++|.++.+.+.....+++.||
T Consensus       233 pivv~ngk-~e------------e~r~~~~vtc~gl~sdr~aa~sgc~~dPriVp----frG~ylll~~ek~h~vk~niy  295 (453)
T KOG2665|consen  233 PIVVLNGK-GE------------EKRTKNVVTCAGLQSDRCAALSGCELDPRIVP----FRGEYLLLKPEKLHLVKGNIY  295 (453)
T ss_pred             ceEEecCc-cc------------eeEEeEEEEeccccHhHHHHHhCCCCCCeeee----ccchhhhcChHHhccccCcee
Confidence            34444443 34            79999999999999999988874 23456677    999999987764456788999


Q ss_pred             eCCCCC--CceeEEeeecCCcEEECCCccc---------cC--C---------cccccccccccccCCChhhHHHHH---
Q 023079          157 PIPEDG--GLGVHVTLDLDGQIKFGPDVEW---------ID--G---------IDDTLSFLNRFDYSVNANRAERFY---  211 (287)
Q Consensus       157 ~~~~~~--~~~~~~~~~~~g~l~iG~~~~~---------~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~---  211 (287)
                      |+|+++  ..|+|++|..+|.+++|+...-         .+  .         +.++..+.+.+++.+++...+.++   
T Consensus       296 Pvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aq  375 (453)
T KOG2665|consen  296 PVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQ  375 (453)
T ss_pred             eCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhh
Confidence            999987  6789999999999999987631         00  0         011112235678888887766665   


Q ss_pred             -HHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHhC
Q 023079          212 -PEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR  287 (287)
Q Consensus       212 -~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~~  287 (287)
                       +.+++|+|+|++.+|.+..+|+|++..|. +...+||+++....|..|+++++.+..++|.|.+.+||+++|+++++
T Consensus       376 vk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAIa~mIa~k~~~  453 (453)
T KOG2665|consen  376 VKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAIAKMIADKFLN  453 (453)
T ss_pred             hHHHHHhCccccccccccCcccccchhccCCCCCchheEEecCccccccceEEecCCCCccchhhHHHHHHHHHHhcC
Confidence             89999999999999999999999776563 56678999987776678999999999999999999999999999875

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.96  E-value=7.1e-29  Score=231.92  Aligned_cols=253  Identities=21%  Similarity=0.209  Sum_probs=194.9

Q ss_pred             CccchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-e
Q 023079            1 MKRGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-C   76 (287)
Q Consensus         1 ~~~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~   76 (287)
                      |.+++++|+. .++||++|+++++|.|+   +.+|+|+|.||.+||..+|++|+++|++.|+.+.++|+|++|..+.+ .
T Consensus       142 ~S~g~a~g~e-~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~  220 (856)
T KOG2844|consen  142 MSRGKAHGVE-SELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKF  220 (856)
T ss_pred             HHhhhhccce-eeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCc
Confidence            4568899997 99999999999999996   78999999999999999999999999999999999999999998754 5


Q ss_pred             EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee
Q 023079           77 MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY  156 (287)
Q Consensus        77 ~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~  156 (287)
                      +.|+|.-|                .|++.+||||||.|+..+.++. +.+.+++|    ++.+|++..+-.  .+...-.
T Consensus       221 ~gVeT~~G----------------~iet~~~VNaaGvWAr~Vg~m~-gvkvPL~p----~~H~YvvT~~Ie--Gi~s~t~  277 (856)
T KOG2844|consen  221 GGVETPHG----------------SIETECVVNAAGVWAREVGAMA-GVKVPLVP----MHHAYVVTSRIE--GVSSLTR  277 (856)
T ss_pred             cceeccCc----------------ceecceEEechhHHHHHhhhhc-CCccccee----eeeeEEEecccC--CccCCCc
Confidence            67999999                8999999999999999999888 46766666    888888876531  2211111


Q ss_pred             eCCCCCCceeEEeeecCCcEEECCCccccCCcccccccc-cccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccc
Q 023079          157 PIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFL-NRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP  235 (287)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~  235 (287)
                      +...+.+..+|++.. .+.+++|+.....-. .+-.+.. -...+..+.+..+..++.+.+++|.|++..|.+.-+|--.
T Consensus       278 p~irD~DgSvylR~~-~~gil~GGyE~n~i~-~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l~k~~i~~~v~gpe~  355 (856)
T KOG2844|consen  278 PNIRDLDGSVYLRQQ-GDGILFGGYESNPIF-TEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVLEKAGIKSLVNGPET  355 (856)
T ss_pred             cceecccceEEEEec-CCceeccccccCcee-ccccCCccccccccccHhhhHHHHHHHHHhCchhhhcCccceecCccc
Confidence            111122333667665 455777765432100 0000000 0001124556667788999999999999998887676544


Q ss_pred             eecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          236 KLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       236 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +     +||.-+++|+++  ++.|+|+++|+++.|++++-++|+.+++||.
T Consensus       356 f-----tPD~~p~mGe~p--~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~  399 (856)
T KOG2844|consen  356 F-----TPDHLPIMGESP--EVRGYWVACGFNSAGLSFGGGCGKYLAEWII  399 (856)
T ss_pred             c-----CCccccccCCCc--cccceEEeecCCccceeccCchhHHHHHHhh
Confidence            4     567788999998  8999999999999999999999999999985

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.96  E-value=2.4e-28  Score=224.61  Aligned_cols=229  Identities=18%  Similarity=0.189  Sum_probs=171.9

Q ss_pred             hhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEE
Q 023079            5 TANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVY   80 (287)
Q Consensus         5 ~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~   80 (287)
                      +..|++ +++|+++|+++++|.+.   ..+|++.|++|++||..++.+|++.+.++ |++|+++++|++++..    .|+
T Consensus       104 ~~~g~~-~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~  178 (365)
T TIGR03364       104 EPAEYR-VELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVR  178 (365)
T ss_pred             hhcCCC-eEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEE
Confidence            456776 99999999999999874   57899999999999999999999988775 9999999999999642    688


Q ss_pred             ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee----
Q 023079           81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY----  156 (287)
Q Consensus        81 t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~----  156 (287)
                      |++|                +++||+||+|+|+|+..|++.+ +...++.|    ++++++.+++.....++..+.    
T Consensus       179 t~~g----------------~i~a~~VV~A~G~~s~~l~~~~-~~~~~~~p----~~~q~~~~~p~~~~~~~~~~~~~~~  237 (365)
T TIGR03364       179 TSRG----------------DVHADQVFVCPGADFETLFPEL-FAASGVRR----CKLQMMRTAPQPRLPLGTALLTGLS  237 (365)
T ss_pred             eCCC----------------cEEeCEEEECCCCChhhhCcch-hhccCcce----EEEEeeeccCCCCCcCCccccccce
Confidence            8888                6899999999999999988766 33455666    899988876542111111100    


Q ss_pred             ----------------------eCCC--CCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHH
Q 023079          157 ----------------------PIPE--DGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYP  212 (287)
Q Consensus       157 ----------------------~~~~--~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (287)
                                            +.|.  ..+.++|++|..+|++++|++.++...          .+...+....+.+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~----------~~~~~~~~~~~~l~~  307 (365)
T TIGR03364       238 LRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGLA----------PDPFDDEEIDNLILA  307 (365)
T ss_pred             eeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccCC----------CCCcchHHHHHHHHH
Confidence                                  0011  113457889998999999987664321          011113344456777


Q ss_pred             HHhhhCCCCCCCCcccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHH
Q 023079          213 EIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAE  279 (287)
Q Consensus       213 ~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~  279 (287)
                      .+.+++ .+.+.++.+.|+|+||++     ++..++++..    .+|+|+++|++|+|++++|++|+
T Consensus       308 ~~~~~~-~l~~~~~~~~w~G~r~~t-----~d~~~v~~~~----~~g~~~a~G~~g~G~~~ap~~~~  364 (365)
T TIGR03364       308 EAKTIL-GLPDLDIVERWQGVYASS-----PPAPIFLERP----DDGVTVVVVTSGAGMTLSFGLAE  364 (365)
T ss_pred             HHHHhc-CCCCCceEEEEeEEecCC-----CCCCceecCC----CCCeEEEEecCCCcccccccccC
Confidence            777766 688889999999999984     4444566532    48999999999999999999986

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.96  E-value=3.6e-27  Score=230.03  Aligned_cols=247  Identities=20%  Similarity=0.213  Sum_probs=186.0

Q ss_pred             CCCeeeeeCHHHHHhhCCCcc-c-----ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--CCeE-E
Q 023079            8 GVHGLRMLEGFEAMKMEPELQ-C-----VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--GNCM-N   78 (287)
Q Consensus         8 g~~~~~~L~~~ei~~~~P~l~-~-----~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~~-~   78 (287)
                      +.+..++|+++|+.+++|.|+ .     ..|.+.+.||++||.+++.+|++.|+++|++++++++|+++..+  ++++ .
T Consensus       190 ~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~g  269 (627)
T PLN02464        190 LLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVG  269 (627)
T ss_pred             CCCCceEECHHHHHHhCCCCCccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEE
Confidence            443379999999999999996 2     44445677899999999999999999999999999999999876  3443 3


Q ss_pred             EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC-CcccCCccccceEEEEEcCCCCCCCCceeee
Q 023079           79 VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIYP  157 (287)
Q Consensus        79 V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~  157 (287)
                      |+..+..+          +++++++|+.||||+|+|+..|.+++++.. ..+.|    .+|.|++++..........+++
T Consensus       270 V~v~d~~t----------g~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p----~kG~hlvl~~~~~~~~~~~i~~  335 (627)
T PLN02464        270 ARVRDNLT----------GKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICP----SSGVHIVLPDYYSPEGMGLIVP  335 (627)
T ss_pred             EEEEECCC----------CcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEe----eeeEEEecccccCCCCceEEec
Confidence            44422110          113468999999999999999999884222 22445    9999999864311111134444


Q ss_pred             CCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCC-CCCCCCcccccccccce
Q 023079          158 IPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPK  236 (287)
Q Consensus       158 ~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~~~G~r~~  236 (287)
                      .. ..+..+++.|. +|++++|+|.+..+         .+.+...++++++.+++.++++|| .+...++.+.|+|+||+
T Consensus       336 ~~-~dgr~~~~~P~-~g~~liGtTd~~~~---------~~~~~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl  404 (627)
T PLN02464        336 KT-KDGRVVFMLPW-LGRTVAGTTDSKTP---------ITMLPEPHEDEIQFILDAISDYLNVKVRRSDVLSAWSGIRPL  404 (627)
T ss_pred             CC-CCCCEEEEEec-CCcEEEecCCCCCC---------CCCCCCCCHHHHHHHHHHHHHhhCCCCChhhEEEEEEeEEee
Confidence            32 23566788887 88999998887643         234556778999999999999998 79999999999999999


Q ss_pred             ecCC-----CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          237 LSGP-----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       237 ~~~~-----~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +.++     ..+.++++|-...    +|++.++|.   .||+++.+|+.+.|.+.
T Consensus       405 ~~d~~~~~~~~~sr~~~i~~~~----~gli~i~GG---k~Tt~R~mAe~~~d~~~  452 (627)
T PLN02464        405 AVDPSAKSTESISRDHVVCEEP----DGLVTITGG---KWTTYRSMAEDAVDAAI  452 (627)
T ss_pred             ccCCCCCcccccCCceEEEecC----CCeEEEECC---hHHHHHHHHHHHHHHHH
Confidence            8763     1234566664432    589988875   79999999999999875

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.96  E-value=5.4e-27  Score=216.80  Aligned_cols=244  Identities=23%  Similarity=0.248  Sum_probs=189.4

Q ss_pred             hcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEe
Q 023079            6 ANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYI   81 (287)
Q Consensus         6 ~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t   81 (287)
                      +.... .++++..++.+++|.+.   ..+|+|.|+++++||..++.+|++.++++| +.+..+++|..++..++.+.|.|
T Consensus       116 ~~~~~-~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t  194 (387)
T COG0665         116 AAGED-AELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVET  194 (387)
T ss_pred             hcCCC-ceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEe
Confidence            34443 47899999999999985   579999999999999999999999999999 56777999999887434678999


Q ss_pred             cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCC
Q 023079           82 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPED  161 (287)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~  161 (287)
                      .+|                +++|++||+|+|+|+..+....+....++.|    .+++++.+.+................
T Consensus       195 ~~g----------------~i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (387)
T COG0665         195 DGG----------------TIEADKVVLAAGAWAGELAATLGELPLPLRP----VRGQALTTEPPEGLLADGLAPVVLVV  254 (387)
T ss_pred             CCc----------------cEEeCEEEEcCchHHHHHHHhcCCCcCcccc----ccceEEEecCCCccccccccceEEEe
Confidence            999                7999999999999999999888414455566    99999988764221111100001111


Q ss_pred             CCceeEEeeecCCcEEECCCccccCCcccccccccccccCCC-hh-hHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079          162 GGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVN-AN-RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG  239 (287)
Q Consensus       162 ~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~  239 (287)
                      ...+.|++|..+|++++|.+.+....          .+.... .+ ...++++.+.+++|.+....+.+.|+|.|+.+  
T Consensus       255 ~~~~~y~~~~~~g~~~~g~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t--  322 (387)
T COG0665         255 DDGGGYIRPRGDGRLRVGGTDEEGGD----------DPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRPPT--  322 (387)
T ss_pred             cCCceEEEEcCCCcEEEeecccccCC----------CCccccCcchhHHHHHHHHHHhCccccccccceeeeccccCC--
Confidence            24448889988999999988765310          111111 11 46789999999999999999999999999983  


Q ss_pred             CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                        +||..++||...  ..+|+|+++|++++|+|++|++|+++|++|+
T Consensus       323 --~pd~~P~iG~~~--~~~~l~~a~G~~~~G~~~~p~~g~~lA~li~  365 (387)
T COG0665         323 --TPDGLPVIGRAA--PLPNLYVATGHGGHGFTLAPALGRLLADLIL  365 (387)
T ss_pred             --CCCCCceeCCCC--CCCCEEEEecCCCcChhhccHHHHHHHHHHc
Confidence              257778999632  2689999999999999999999999999986

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.95  E-value=1.9e-27  Score=234.25  Aligned_cols=227  Identities=18%  Similarity=0.134  Sum_probs=183.3

Q ss_pred             eeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCC
Q 023079           12 LRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWD   91 (287)
Q Consensus        12 ~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~   91 (287)
                      +++|+++|+.+++|.....+|+|.|++|++||..++.+|++.+++ |++++++++|+++..++++|.|+|++|.      
T Consensus       376 ~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~------  448 (662)
T PRK01747        376 ARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGT------  448 (662)
T ss_pred             hhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCc------
Confidence            688999999999875446789999999999999999999999999 9999999999999988888999988772      


Q ss_pred             CCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC-CCCceeeeCCCCCCceeEEee
Q 023079           92 GVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDGGLGVHVTL  170 (287)
Q Consensus        92 ~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~  170 (287)
                               .++|++||+|+|+|+..+.+..   .+++.|    +||+++.+...... .++..+       ..+.|++|
T Consensus       449 ---------~~~ad~VV~A~G~~s~~l~~~~---~lpl~p----~RGqv~~~~~~~~~~~~~~~~-------~~~~Y~~p  505 (662)
T PRK01747        449 ---------LASAPVVVLANGHDAARFAQTA---HLPLYS----VRGQVSHLPTTPALSALKQVL-------CYDGYLTP  505 (662)
T ss_pred             ---------EEECCEEEECCCCCcccccccc---CCCccc----ccceEEeecCCccccccCcee-------ECCceeCC
Confidence                     5789999999999999887532   344555    99999887653111 111111       11368888


Q ss_pred             -ecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCC-----CCCCcccccccccceecCCCCCC
Q 023079          171 -DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDL-----RDGSLQPSYAGIRPKLSGPRQSP  244 (287)
Q Consensus       171 -~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l-----~~~~i~~~~~G~r~~~~~~~~~~  244 (287)
                       ..+|.+++|++.+..           ..+...+.+..+.+++.+.+++|.+     .+..+...|+|+|+.+     +|
T Consensus       506 ~~~~g~~~iGat~~~~-----------~~~~~~~~~~~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~t-----pD  569 (662)
T PRK01747        506 QPANGTHCIGASYDRD-----------DTDTAFREADHQENLERLAECLPQALWAKEVDVSALQGRVGFRCAS-----RD  569 (662)
T ss_pred             CCCCCceEeCcccCCC-----------CCCCCCCHHHHHHHHHHHHHhCCCchhhhccCccccCceEEEeccC-----CC
Confidence             778899999876542           2334456777888999999999987     5667889999999994     56


Q ss_pred             CCeEEec----------------------CCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          245 IDFVIQG----------------------DDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       245 ~~~~i~~----------------------~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ..|+||.                      .+  ..+|+|+++|++|+||++||++|+++|++|+
T Consensus       570 ~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~--~~~gl~v~~G~gs~Gl~~ap~~a~~lA~li~  631 (662)
T PRK01747        570 RLPMVGNVPDEAATLAEYAALANQQPARDAP--RLPGLYVAGALGSRGLCSAPLGAELLASQIE  631 (662)
T ss_pred             cccccCCCCCHHHHHHHHHhhhhccccccCC--CCCCeEEEecccccHHHHHHHHHHHHHHHHh
Confidence            6779998                      33  5689999999999999999999999999985

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.95  E-value=9.5e-27  Score=222.56  Aligned_cols=251  Identities=17%  Similarity=0.200  Sum_probs=187.6

Q ss_pred             cCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcc
Q 023079            7 NGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKN   86 (287)
Q Consensus         7 ~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~   86 (287)
                      ++++..+.++.+++.+.+|......+.+.+.+|++||.+++.+++..|+++|++++++++|+++..+++.|.|++.++. 
T Consensus       118 ~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-  196 (502)
T PRK13369        118 KRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-  196 (502)
T ss_pred             CCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-
Confidence            3454578888888877777323344456678899999999999999999999999999999999988878888776652 


Q ss_pred             cccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC--CcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCc
Q 023079           87 LRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD--NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL  164 (287)
Q Consensus        87 ~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~--~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~  164 (287)
                                +++++++|+.||||+|+|++++.+++.+..  ..+.|    .||++++++....   ....+..+...+.
T Consensus       197 ----------g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p----~kG~~lv~~~~~~---~~~~~~~~~~dgr  259 (502)
T PRK13369        197 ----------GETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRL----VKGSHIVVPKFWD---GAQAYLFQNPDKR  259 (502)
T ss_pred             ----------CCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEE----eeEEEEEeCCccC---CCceEEEeCCCCe
Confidence                      224579999999999999999988552322  33445    9999999864321   1111222222234


Q ss_pred             eeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCC-CCCCCCcccccccccceecCC---
Q 023079          165 GVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP---  240 (287)
Q Consensus       165 ~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~~~G~r~~~~~~---  240 (287)
                      -+++.|..++..++|++....+.        ++.+..++++.++++++.++++|| .|+..++++.|+|+||+..+.   
T Consensus       260 ~~~i~P~~~~~~liGtTd~~~~~--------~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~  331 (502)
T PRK13369        260 VIFANPYEGDFTLIGTTDIAYEG--------DPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGN  331 (502)
T ss_pred             EEEEEEecCCEEEEEecCccccC--------CCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCC
Confidence            35778876678899988764321        234667889999999999999996 899999999999999998653   


Q ss_pred             -CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          241 -RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       241 -~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                       ....++|.|-.+..++.+|++.++|   .|+|+++++|+.+++.+.
T Consensus       332 ~~~~sR~~~i~~~~~~g~~gli~i~G---gk~Tt~r~~Ae~v~d~~~  375 (502)
T PRK13369        332 PSAVTRDYVFDLDAETGGAPLLSVFG---GKITTFRKLAEHALERLK  375 (502)
T ss_pred             cccCCcceEEeeccccCCCCeEEEeC---ChHhhHHHHHHHHHHHHH
Confidence             1224677765442124579999998   389999999999999875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.95  E-value=1.1e-25  Score=211.22  Aligned_cols=247  Identities=21%  Similarity=0.261  Sum_probs=193.3

Q ss_pred             CCeeeeeCHHHHHhhCCCcc--c-ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCc
Q 023079            9 VHGLRMLEGFEAMKMEPELQ--C-VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESK   85 (287)
Q Consensus         9 ~~~~~~L~~~ei~~~~P~l~--~-~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~   85 (287)
                      .+..+.++.++..+++|.++  . .||++. .|+++|+.+|+...++.|..+|++++++++|+++.++++-|.|+..+..
T Consensus       127 ~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y-~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~  205 (532)
T COG0578         127 LPASRVLDPKEALPLEPALKKDGLKGAFRY-PDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRE  205 (532)
T ss_pred             CCcceecchhhhhhcCcccchhhccceEEE-ccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecC
Confidence            34588999999999999996  3 445555 5779999999999999999999999999999999999886678776653


Q ss_pred             ccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC---CcccCCccccceEEEEEcCCCCCCCCceeeeCCCCC
Q 023079           86 NLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD---NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG  162 (287)
Q Consensus        86 ~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~---~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~  162 (287)
                      +          ++++.|+|+.||||||+|+.++.++.+...   .++.|    +||.|++++.. .......++.++.+ 
T Consensus       206 t----------g~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~----skGsHlVv~~~-~~~~~a~~~~~~~d-  269 (532)
T COG0578         206 T----------GETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRP----SKGSHLVVDKK-FPINQAVINRCRKD-  269 (532)
T ss_pred             C----------CcEEEEEcCEEEECCCccHHHHHHhhcccCCCCcccee----ccceEEEeccc-CCCCceEEeecCCC-
Confidence            2          347889999999999999999999884221   24556    99999999872 22233455666542 


Q ss_pred             CceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHh-hhCCCCCCCCcccccccccceecCC-
Q 023079          163 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIR-KYYPDLRDGSLQPSYAGIRPKLSGP-  240 (287)
Q Consensus       163 ~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~i~~~~~G~r~~~~~~-  240 (287)
                      +.-+.++| .++..+||+|+...+.        ++.++.+++++++.+++.++ .+-|.++..+|.++|+|+||+..+- 
T Consensus       270 ~r~~f~iP-~~~~~liGTTD~~~~~--------~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~  340 (532)
T COG0578         270 GRIVFAIP-YEGKTLIGTTDTDYDG--------DPEDPRITEEEIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGD  340 (532)
T ss_pred             CceEEEec-CCCCEEeeccccccCC--------CcccCCCCHHHHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCC
Confidence            44344555 5777899999987653        35677889999999999999 4448899999999999999998752 


Q ss_pred             ---CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          241 ---RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       241 ---~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                         ....+++.|-.+.  +.+|++.++|.   ++|++..+|+.+++.+.
T Consensus       341 ~~~~~isR~~~l~~~~--~~~glltv~GG---KlTTyR~maE~a~d~v~  384 (532)
T COG0578         341 DDTSAISRDHVLFDHA--ELAGLLTVAGG---KLTTYRKMAEDALDAVC  384 (532)
T ss_pred             CchhhccCceEEEecC--CCCCeEEEecc---hhHHhHHHHHHHHHHHH
Confidence               1224566554443  35799999884   99999999999999864

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.95  E-value=9.8e-26  Score=215.67  Aligned_cols=233  Identities=18%  Similarity=0.229  Sum_probs=174.7

Q ss_pred             CCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeE
Q 023079           25 PELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTL  102 (287)
Q Consensus        25 P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i  102 (287)
                      |.+.  ..+| +.+.+|++||.+++.++++.|.++|++++++++|+++..+++.|.|++.+..+          +++.++
T Consensus       135 ~~L~~~l~g~-~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~----------g~~~~i  203 (508)
T PRK12266        135 SPLKPEITRG-FEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTAT----------GKRYTV  203 (508)
T ss_pred             CCcchhhcEE-EEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCC----------CCEEEE
Confidence            5564  4566 45677899999999999999999999999999999998887778777654211          123579


Q ss_pred             ecCEEEEcCCCCchHHHHHhCCC--CCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCceeEEeeecCCcEEECC
Q 023079          103 IPKLVVNSAGLSAPALAKRFIGL--DNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP  180 (287)
Q Consensus       103 ~a~~VV~aaG~~s~~l~~~~~~~--~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~l~iG~  180 (287)
                      +|++||||+|+|++++.+++.+.  ..++.|    .+|++++++.... .....+++.  ..+.-+++.|..+|..++|+
T Consensus       204 ~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p----~kG~~lvl~~~~~-~~~~~~~~~--~dgr~v~~~P~~~g~~liGt  276 (508)
T PRK12266        204 RARALVNAAGPWVKQFLDDGLGLPSPYGIRL----VKGSHIVVPRLFD-HDQAYILQN--PDGRIVFAIPYEDDFTLIGT  276 (508)
T ss_pred             EcCEEEECCCccHHHHHhhccCCCCCcceee----eeeEEEEECCcCC-CCcEEEEeC--CCCCEEEEEEeCCCeEEEec
Confidence            99999999999999998754122  334445    9999999865321 111222332  23444667887788999998


Q ss_pred             CccccCCcccccccccccccCCChhhHHHHHHHHhhhCC-CCCCCCcccccccccceecCC----CCCCCCeEEecCCCC
Q 023079          181 DVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP----RQSPIDFVIQGDDTH  255 (287)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~~~G~r~~~~~~----~~~~~~~~i~~~~~~  255 (287)
                      +++....        ++.+..++++.++++++.++++|| .+...++++.|+|+||++.+.    .+..++|.|..+..+
T Consensus       277 td~~~~~--------~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~  348 (508)
T PRK12266        277 TDVEYKG--------DPAKVAISEEEIDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDEN  348 (508)
T ss_pred             CCCCCCC--------CCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccC
Confidence            8764321        234566788999999999999995 899999999999999998763    233578877554212


Q ss_pred             CCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          256 GVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       256 ~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +.+|++.++|.   +||+++.+|+.++|.+.
T Consensus       349 g~~gli~v~Gg---k~Tt~r~mAe~~~~~~~  376 (508)
T PRK12266        349 GGAPLLSVFGG---KITTYRKLAEHALEKLA  376 (508)
T ss_pred             CCCCeEEEEcC---hHHHHHHHHHHHHHHHH
Confidence            56899999984   89999999999999875

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.93  E-value=1.5e-24  Score=189.68  Aligned_cols=260  Identities=18%  Similarity=0.168  Sum_probs=183.6

Q ss_pred             hcCCCeeeeeCHHHHHhhCCCcc---c-ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEE
Q 023079            6 ANGVHGLRMLEGFEAMKMEPELQ---C-VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVY   80 (287)
Q Consensus         6 ~~g~~~~~~L~~~ei~~~~P~l~---~-~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~   80 (287)
                      +.|.. .++|+++++.+++|+++   + .+-+=..++||+||..|+.++.+.+...||.|.. -+|++++.+..+ +.+.
T Consensus       202 e~GAk-~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~~-GeV~~Fef~sqr~v~~~  279 (509)
T KOG2853|consen  202 ELGAK-VELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWALLSGIRRKAITLGVQFVK-GEVVGFEFESQRAVHAF  279 (509)
T ss_pred             hhcch-hcccCHHHHhhhCCcccccceeeeecccccccccCHHHHHHHHHHHhhhhcceEec-ceEEEEEEecccceeee
Confidence            45776 99999999999999997   2 2333367899999999999999999999999986 488888776432 2333


Q ss_pred             ecCCcccc-----cCCCCCCC-CCceeEecCEEEEcCCCCchHHHHHhC-CCCC---c-ccCCccccceEEEEEcCCCCC
Q 023079           81 ISESKNLR-----NWDGVSPL-QPELTLIPKLVVNSAGLSAPALAKRFI-GLDN---V-FIPPAYYARGCYFSLANTKVA  149 (287)
Q Consensus        81 t~~g~~~~-----~~~~~~~~-~~~~~i~a~~VV~aaG~~s~~l~~~~~-~~~~---~-~~p~~~~~~g~~~~~~~~~~~  149 (287)
                      |++|.+.-     +=-.+.+. .....+++..+|||||+||.+++++.+ |...   . ..| +.++|.+++++..+...
T Consensus       280 tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAgIG~g~g~L~vplP-iepRKRyvyvi~~~~~P  358 (509)
T KOG2853|consen  280 TDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAGIGKGPGLLAVPLP-IEPRKRYVYVIFAPDVP  358 (509)
T ss_pred             cccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhccCCCCceeeeccc-CCccceeEEEEeCCCCC
Confidence            33330000     00000000 122468999999999999999999884 2110   0 112 44488887777544222


Q ss_pred             CCCceeeeCCCCCCceeEEeeecC-CcEEECCCcc-ccCCcccccccccccccCCCh-hhHHHHHHHHhhhCCCCCCCCc
Q 023079          150 PFKHLIYPIPEDGGLGVHVTLDLD-GQIKFGPDVE-WIDGIDDTLSFLNRFDYSVNA-NRAERFYPEIRKYYPDLRDGSL  226 (287)
Q Consensus       150 ~~~~~i~~~~~~~~~~~~~~~~~~-g~l~iG~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~l~~~~i  226 (287)
                      .+...+-  .+  ..|+|++++.- |++++|.+.. +.+        +|..+..++. ...+.++..+..++|.++.+++
T Consensus       359 Gl~~Pl~--iD--psG~f~Rrdglg~nfl~grsp~ed~~--------~d~~nldVD~d~F~qkiwP~L~nRVP~fetakV  426 (509)
T KOG2853|consen  359 GLDTPLT--ID--PSGVFFRRDGLGGNFLCGRSPSEDEE--------PDHSNLDVDHDYFYQKIWPHLANRVPAFETAKV  426 (509)
T ss_pred             CCCCcee--EC--CCccEEEecCCCCceecccCCccccC--------CCccccccChHHHHhhhhHHHHhcccccceeee
Confidence            2322111  12  24799988754 4678875432 211        1223334443 4466899999999999999999


Q ss_pred             ccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          227 QPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       227 ~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      .+.|+|.+..    ++.|.+.+||++|  -+.|++.++|++|||++.+|++|+.++|+|+
T Consensus       427 qsaWaGyyD~----NtfD~ngViG~HP--~y~Nly~atGFsghGvqqs~avgRAiaElIl  480 (509)
T KOG2853|consen  427 QSAWAGYYDH----NTFDDNGVIGEHP--LYTNLYMATGFSGHGVQQSPAVGRAIAELIL  480 (509)
T ss_pred             eehhcccccc----cccccCCcccCCc--ceeeeeeeecccccchhcchHHHHHHHHHHh
Confidence            9999999998    6778888999998  6889999999999999999999999999986

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.93  E-value=3.3e-24  Score=203.54  Aligned_cols=264  Identities=20%  Similarity=0.219  Sum_probs=185.6

Q ss_pred             ccchhcCCC-eeee-eCHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEE
Q 023079            2 KRGTANGVH-GLRM-LEGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHL   72 (287)
Q Consensus         2 ~~~~~~g~~-~~~~-L~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~   72 (287)
                      +..+++|+. ++++ ++++|+++++|.+.       ..+|+|+|++|++||..++.+|++.++++|++|+++++|+++++
T Consensus       127 ~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~  206 (483)
T TIGR01320       127 EALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKR  206 (483)
T ss_pred             HHHhcCCCccCceEeCCHHHHHHhCCCcccCCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence            456777872 2675 79999999999985       56899999999999999999999999999999999999999988


Q ss_pred             eC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCC---CCcccCCccccceEEEEEcCC-C
Q 023079           73 EG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL---DNVFIPPAYYARGCYFSLANT-K  147 (287)
Q Consensus        73 ~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~---~~~~~p~~~~~~g~~~~~~~~-~  147 (287)
                      .+ +.|.|++.+..++          ...+++|++||||||+|+..|++++|..   .+.+.|    ++|+++.++.+ .
T Consensus       207 ~~~~~v~v~~~~~~~g----------~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P----~~Gq~l~l~~~~~  272 (483)
T TIGR01320       207 QSDGSWTVTVKNTRTG----------GKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFP----VSGLFLRCGNPEL  272 (483)
T ss_pred             cCCCeEEEEEeeccCC----------ceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceee----eeEEEEEeCCHHH
Confidence            65 4677754321000          1126999999999999999999998522   345566    99999999754 2


Q ss_pred             CCCCCceeeeCCCCC--Ccee-EE-eeecCCcEE--ECCCcccc-----CCc-cccc---cccc----------c---cc
Q 023079          148 VAPFKHLIYPIPEDG--GLGV-HV-TLDLDGQIK--FGPDVEWI-----DGI-DDTL---SFLN----------R---FD  199 (287)
Q Consensus       148 ~~~~~~~i~~~~~~~--~~~~-~~-~~~~~g~l~--iG~~~~~~-----~~~-~~~~---~~~~----------~---~~  199 (287)
                      ....+..+|++|++.  ..++ |+ ++..+|+..  |||++.+.     +.. .|..   .+.+          .   ..
T Consensus       273 ~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~  352 (483)
T TIGR01320       273 TEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTK  352 (483)
T ss_pred             HhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHH
Confidence            223456799999874  2344 55 555577765  99998731     110 0110   0000          0   00


Q ss_pred             cCCCh--hhHHHHHHHHhhhCCCCCCCCcccccccccceecCCC-C-----CC-CCeEEecCCCCCCCCeEEEeCCCCch
Q 023079          200 YSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR-Q-----SP-IDFVIQGDDTHGVPGLVNLFGIESPG  270 (287)
Q Consensus       200 ~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~-~-----~~-~~~~i~~~~~~~~~~l~~~~G~~g~G  270 (287)
                      +...+  ......++.+++|+|.+...++....+|+|++..+.. .     .+ ++|+|...     ++.+++.-.-|+|
T Consensus       353 ~~~~e~~~~~~~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~~~-----~~~~~~l~~~SPg  427 (483)
T TIGR01320       353 YLIGQLRKSEEERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADA-----DGSIAGLLGASPG  427 (483)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEECC-----CCeEEEecCCCch
Confidence            00000  1122346778899999999999999999999988741 1     11 24466443     4666654456799


Q ss_pred             hhhhHHHHHHHHHH
Q 023079          271 LTSSMAIAEYVAAK  284 (287)
Q Consensus       271 ~t~ap~~g~~va~~  284 (287)
                      +|+|.++|+.|++.
T Consensus       428 aTss~~i~~~v~~~  441 (483)
T TIGR01320       428 ASTAVSIMLDLLER  441 (483)
T ss_pred             HHhhHHHHHHHHHH
Confidence            99999999999985

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.93  E-value=2e-24  Score=204.84  Aligned_cols=254  Identities=22%  Similarity=0.296  Sum_probs=189.9

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc----------cceeEEcCCc-eeecHHHHHHHHHHHHHH----CC--cEEEcCc
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ----------CVKALLSPAS-GIVDSHSLMLSLVGEAEN----HG--TTFSNNT   65 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~----------~~~al~~p~~-g~vdp~~l~~~l~~~a~~----~G--v~~~~~~   65 (287)
                      ..+..+.+ +++++++|+++++|.+.          ..+|+|.|++ +.+||..++.+|++.|++    +|  +++++++
T Consensus       160 ~~~~~~~~-~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t  238 (497)
T PTZ00383        160 VFKELFPS-MQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNT  238 (497)
T ss_pred             HHHccCCC-eEEECHHHHHHhCcccccCccccccccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCC
Confidence            44556665 99999999999999873          5689999988 699999999999999999    88  7899999


Q ss_pred             eeEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC-CCCCcccCCccccceEEEEE
Q 023079           66 SVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI-GLDNVFIPPAYYARGCYFSL  143 (287)
Q Consensus        66 ~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~-~~~~~~~p~~~~~~g~~~~~  143 (287)
                      +|++|+++ ++.|.|+|.+|                +++|++||||||+|+..|+++++ +.++.+.|    ++|+|+..
T Consensus       239 ~V~~I~~~~~~~~~V~T~~G----------------~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~P----v~G~~~~~  298 (497)
T PTZ00383        239 EVLNIERSNDSLYKIHTNRG----------------EIRARFVVVSACGYSLLFAQKMGYGLEYSCLP----VAGSFYFS  298 (497)
T ss_pred             EEEEEEecCCCeEEEEECCC----------------EEEeCEEEECcChhHHHHHHHhCCCCCCCEEe----cCceEEEc
Confidence            99999988 45688999988                89999999999999999999985 34667777    99999877


Q ss_pred             cCCCCCCCCceeeeCCCCC--CceeEEeeec--CCcEEECCCccccCCc-----cccccc-----ccc------cccCCC
Q 023079          144 ANTKVAPFKHLIYPIPEDG--GLGVHVTLDL--DGQIKFGPDVEWIDGI-----DDTLSF-----LNR------FDYSVN  203 (287)
Q Consensus       144 ~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~--~g~l~iG~~~~~~~~~-----~~~~~~-----~~~------~~~~~~  203 (287)
                      ++    .++..+|+++++.  +.++|+.++.  +|+++|||++.+....     .++.++     ++-      ++.-.+
T Consensus       299 ~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~  374 (497)
T PTZ00383        299 GN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKD  374 (497)
T ss_pred             Ch----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhC
Confidence            53    4678899988763  5678998885  8889999998642110     011000     000      000000


Q ss_pred             ----------------hhhHHHHHHHHhhhCCCCCCCCccc--ccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeC
Q 023079          204 ----------------ANRAERFYPEIRKYYPDLRDGSLQP--SYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFG  265 (287)
Q Consensus       204 ----------------~~~~~~~~~~~~~~~P~l~~~~i~~--~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G  265 (287)
                                      ......+++.+++++|.+...++..  .++|+|++..+.  .+..+.+|.......+|++...|
T Consensus       375 ~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~--~~~~L~~g~~~i~~~~~~i~~~~  452 (497)
T PTZ00383        375 STMRKYVLRNFLFEVPLLNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDK--VSKKLLLGEGKIDPGKGIIFNIT  452 (497)
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEEC--CCCeEecCceEEecCCCcEEecc
Confidence                            1123345677889999999999886  466999999874  22336667664434578777777


Q ss_pred             CCCchhhhhHHHHHHHHHH
Q 023079          266 IESPGLTSSMAIAEYVAAK  284 (287)
Q Consensus       266 ~~g~G~t~ap~~g~~va~~  284 (287)
                      - ++|.|+|.+.|+.=+..
T Consensus       453 ~-spgast~l~~~~~d~~~  470 (497)
T PTZ00383        453 P-SPGATTCLGNAESDMRE  470 (497)
T ss_pred             C-CCcHHHHHHHHHHHHHH
Confidence            4 59999999888654433

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.92  E-value=1.2e-23  Score=199.07  Aligned_cols=264  Identities=19%  Similarity=0.176  Sum_probs=188.4

Q ss_pred             cchhcCC-Ceeeee-CHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEE
Q 023079            3 RGTANGV-HGLRML-EGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHL   72 (287)
Q Consensus         3 ~~~~~g~-~~~~~L-~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~   72 (287)
                      ..+.+++ ++++++ |++|+++++|.+.       ..+|+|+|+++.+|+..++++|.+.+.+ .|++++++++|+++++
T Consensus       134 ~~~~~~~f~~~~~~~d~~el~~~~P~l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~  213 (497)
T PRK13339        134 ALKQHPMFDNIEYTEDIEVMAKWMPLMMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER  213 (497)
T ss_pred             HhhccCCCCCcEEecCHHHHHHhCCcccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE
Confidence            4566677 238999 8999999999984       4789999999999999999999999965 4999999999999988


Q ss_pred             e-CCeEEEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCC---CCcccCCccccceEEEEEcC
Q 023079           73 E-GNCMNVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL---DNVFIPPAYYARGCYFSLAN  145 (287)
Q Consensus        73 ~-~~~~~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~---~~~~~p~~~~~~g~~~~~~~  145 (287)
                      . ++.|.|+   |..+.             ..+++||+||||||+|+..|++++|..   .+.+.|    ++|+++.+++
T Consensus       214 ~~d~~w~v~v~~t~~g~-------------~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~P----vkGq~l~l~~  276 (497)
T PRK13339        214 LSDGGWEVTVKDRNTGE-------------KREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFP----ISGQFLRCTN  276 (497)
T ss_pred             CCCCCEEEEEEecCCCc-------------eEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEe----eeEEEEEecC
Confidence            7 6778775   33331             125899999999999999999999532   256677    9999999976


Q ss_pred             CCCCCCC---ceeeeCCCCC--Ccee-EE-eeecCCc--EEECCCccccC-----Cc-cccc---ccc----------cc
Q 023079          146 TKVAPFK---HLIYPIPEDG--GLGV-HV-TLDLDGQ--IKFGPDVEWID-----GI-DDTL---SFL----------NR  197 (287)
Q Consensus       146 ~~~~~~~---~~i~~~~~~~--~~~~-~~-~~~~~g~--l~iG~~~~~~~-----~~-~~~~---~~~----------~~  197 (287)
                      +  ..++   ..+|+.+++.  ..++ |+ ++..+|+  ++|||++.+..     .. .|..   .+.          +.
T Consensus       277 ~--~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~  354 (497)
T PRK13339        277 P--EVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKN  354 (497)
T ss_pred             H--HHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhc
Confidence            3  2332   3689988653  2233 55 5566786  89999987530     00 1111   000          00


Q ss_pred             c---ccCCCh--hhHHHHHHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEE-ecCCCCCCCCeEEEeCCCCch
Q 023079          198 F---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVI-QGDDTHGVPGLVNLFGIESPG  270 (287)
Q Consensus       198 ~---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i-~~~~~~~~~~l~~~~G~~g~G  270 (287)
                      +   .+.+.+  .....+++.+++|+|.+...++....+|+|++..+. ++...||++ |..-....++.+++.-.-|+|
T Consensus       355 ~~l~~~~~~e~~~~k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~~s~~~lna~SPg  434 (497)
T PRK13339        355 MPLIKYSIDQVMQTKEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHSVIALLGESPG  434 (497)
T ss_pred             cHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCCCeEEEecCCCcH
Confidence            0   011111  123456788999999999999999999999998875 344447754 332111235755544456799


Q ss_pred             hhhhHHHHHHHHHHH
Q 023079          271 LTSSMAIAEYVAAKF  285 (287)
Q Consensus       271 ~t~ap~~g~~va~~i  285 (287)
                      +|+|.++|+.|++.+
T Consensus       435 ATssl~ia~~v~~~~  449 (497)
T PRK13339        435 ASTSVSVALEVLERN  449 (497)
T ss_pred             HHhhHHHHHHHHHHH
Confidence            999999999999864

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.91  E-value=5.5e-23  Score=179.75  Aligned_cols=251  Identities=17%  Similarity=0.172  Sum_probs=164.2

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCC-Ccc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEE---eCC
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEP-ELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHL---EGN   75 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P-~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~---~~~   75 (287)
                      ..+..++. ++.++.+|+++++| .+.   ...|+..+.+|++++.+.+.+|...++.+|+.|+.+.+|..++.   ++.
T Consensus       109 ~~k~~~l~-h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~  187 (399)
T KOG2820|consen  109 NLKRKGLA-HSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGN  187 (399)
T ss_pred             HHhhhhhh-hhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCc
Confidence            35667886 99999999999999 443   67899999999999999999999999999999999999998874   345


Q ss_pred             eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCcee
Q 023079           76 CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI  155 (287)
Q Consensus        76 ~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i  155 (287)
                      .+.|.|.+|.               ++.|+++|+++|+|..++++...+...|+.| +. ..-+++.....      +.+
T Consensus       188 ~v~V~Tt~gs---------------~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~-i~-ltvcywk~~~~------~~~  244 (399)
T KOG2820|consen  188 HVSVQTTDGS---------------IYHAKKIIFTVGAWINKLLPTSLAIGFPVAP-IQ-LTVCYWKTKKN------MPV  244 (399)
T ss_pred             eeEEEeccCC---------------eeecceEEEEecHHHHhhcCcccccCCccce-eE-eehhhheeecC------Cce
Confidence            6779998882               6999999999999999999864345555444 11 01122222111      111


Q ss_pred             eeCCCCCCceeEEeeecCCc-EEECCCc-cccC------Cc-cccc-ccccccccCCChhhHHHHHHHHhhhCCCCCCCC
Q 023079          156 YPIPEDGGLGVHVTLDLDGQ-IKFGPDV-EWID------GI-DDTL-SFLNRFDYSVNANRAERFYPEIRKYYPDLRDGS  225 (287)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~g~-l~iG~~~-~~~~------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~  225 (287)
                      |- ..+ ..-..|-|..+++ ++.|... ++..      +. .+.. .-++...-......++-+...++.+.|++.+..
T Consensus       245 ~l-~~d-~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~~~  322 (399)
T KOG2820|consen  245 YL-FDD-DCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDLDDRS  322 (399)
T ss_pred             ee-cCC-CCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccccCCC
Confidence            10 000 0101111122221 2222111 1000      00 0000 000111111122355666677788889998655


Q ss_pred             cccccccccceecCC-CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHhC
Q 023079          226 LQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR  287 (287)
Q Consensus       226 i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~~  287 (287)
                      ....      ..|.+ ++||.+|+||..|  ..+|+|++.|+|||||+++|++|+.+|+++.+
T Consensus       323 p~~t------~~C~YT~TpD~~FviD~~P--~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~  377 (399)
T KOG2820|consen  323 PINT------KMCMYTDTPDANFVIDKHP--QYDNVFVGGGGSGHGFKFAPNIGKYLAEMAMG  377 (399)
T ss_pred             ccee------eEEEeeCCCCcCeeeecCC--CcccEEEecCCCCcceeecchHHHHHHHHhhh
Confidence            4332      33333 6889999999998  78899999999999999999999999998753

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.91  E-value=8.6e-23  Score=194.13  Aligned_cols=264  Identities=20%  Similarity=0.231  Sum_probs=182.9

Q ss_pred             cchhcCC-Ceeeee-CHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEE
Q 023079            3 RGTANGV-HGLRML-EGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHL   72 (287)
Q Consensus         3 ~~~~~g~-~~~~~L-~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~   72 (287)
                      ..+++|+ .+++++ +++|+++++|.+.       ..+|+|+|.++++||..++.+|.+.++++| ++++++++|++++.
T Consensus       133 ~~~~~g~~~~~~~~~d~~el~e~eP~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~  212 (494)
T PRK05257        133 ALKANPLFAGMEFSEDPAQIKEWAPLMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR  212 (494)
T ss_pred             HHHhCCCCCCCEEeCCHHHHHHhCcccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE
Confidence            4566776 237774 9999999999983       679999999999999999999999999987 89999999999998


Q ss_pred             eCC-eEEEEecC---CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCC---CCcccCCccccceEEEEEcC
Q 023079           73 EGN-CMNVYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL---DNVFIPPAYYARGCYFSLAN  145 (287)
Q Consensus        73 ~~~-~~~V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~---~~~~~p~~~~~~g~~~~~~~  145 (287)
                      .++ .|.|.+.+   |.             ..+++|++||+|||+|+..|+++++..   ++++.|    ++|+++++++
T Consensus       213 ~~dg~~~v~~~~~~~G~-------------~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~P----vrGq~l~~~~  275 (494)
T PRK05257        213 NDDGSWTVTVKDLKTGE-------------KRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFP----VSGQFLVCEN  275 (494)
T ss_pred             CCCCCEEEEEEEcCCCc-------------eEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeee----eeEEEEEcCC
Confidence            655 48776543   31             125999999999999999999998422   245666    9999999976


Q ss_pred             CCCCCCCce--eeeCCCCC--Ccee-EE-eeecCCc--EEECCCccccCCc------ccccc---c------c----ccc
Q 023079          146 TKVAPFKHL--IYPIPEDG--GLGV-HV-TLDLDGQ--IKFGPDVEWIDGI------DDTLS---F------L----NRF  198 (287)
Q Consensus       146 ~~~~~~~~~--i~~~~~~~--~~~~-~~-~~~~~g~--l~iG~~~~~~~~~------~~~~~---~------~----~~~  198 (287)
                      +. ...++.  +|+.+++.  ..++ |+ ++..+|+  ++|||++.+....      .|...   +      .    +.+
T Consensus       276 ~~-~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  354 (494)
T PRK05257        276 PE-VVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNF  354 (494)
T ss_pred             HH-HHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhh
Confidence            41 112344  89887632  2233 44 5556775  8999988642100      11110   0      0    000


Q ss_pred             ---ccCCCh--hhHHHHHHHHhhhCCCCCCCCcccccccccceecCCC-CCCCCeEEec-CCCCCCCCeEEEeCCCCchh
Q 023079          199 ---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR-QSPIDFVIQG-DDTHGVPGLVNLFGIESPGL  271 (287)
Q Consensus       199 ---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~-~~~~~~~i~~-~~~~~~~~l~~~~G~~g~G~  271 (287)
                         .+-+.+  .....+++.+++|+|.++..++....+|+|++..++. ...+.+..|. .- ...++.+++.-.-|+|+
T Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i-~~~~~~~~~l~~~SPga  433 (494)
T PRK05257        355 DLTKYLISQVMLSDEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVV-SSADGSIAALLGASPGA  433 (494)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEE-ecCCCeEEEEcCCCchH
Confidence               011111  1234567889999999999999999999999988641 0012233332 10 02357665544567999


Q ss_pred             hhhHHHHHHHHHHH
Q 023079          272 TSSMAIAEYVAAKF  285 (287)
Q Consensus       272 t~ap~~g~~va~~i  285 (287)
                      |+|.++|+.|++.+
T Consensus       434 t~s~~i~~~v~~~~  447 (494)
T PRK05257        434 STAVPIMLEVLEKC  447 (494)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999864

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.88  E-value=1.5e-21  Score=179.54  Aligned_cols=246  Identities=18%  Similarity=0.217  Sum_probs=184.4

Q ss_pred             CCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E-EEEec
Q 023079            8 GVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYIS   82 (287)
Q Consensus         8 g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~-~V~t~   82 (287)
                      .+...++||++|..+++|-|+   ..|++. .-||+.|..++..+++--|.++|+++.+|.+|.++..++++ + .++..
T Consensus       186 ~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~V-YyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~r  264 (680)
T KOG0042|consen  186 NLKSSYFLSKKEALEIFPMLRKDNLKGAMV-YYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARAR  264 (680)
T ss_pred             ccccceeecHHHHHHhCccccccCceeEEE-EecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEE
Confidence            344478999999999999996   445554 45789999999999999999999999999999999776543 3 34444


Q ss_pred             CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCC-CCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCC
Q 023079           83 ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG-LDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPED  161 (287)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~-~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~  161 (287)
                      +..          +|+++.|+|+.||||||++++.|.+|-.. .+....|    +-|.|+++..-....--.++-|.- .
T Consensus       265 D~i----------TG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~p----SsGvHIVlP~yY~P~~mGlldP~T-s  329 (680)
T KOG0042|consen  265 DHI----------TGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICVP----SSGVHIVLPGYYCPENMGLLDPKT-S  329 (680)
T ss_pred             Eee----------cCcEEEEEEEEEEeCCCCccHHHHhhcccccCceecc----CCceeEEcccccCCcccccccCCC-C
Confidence            442          35578999999999999999999988731 2233455    889999996543221112222211 1


Q ss_pred             CCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhC---CCCCCCCcccccccccceec
Q 023079          162 GGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYY---PDLRDGSLQPSYAGIRPKLS  238 (287)
Q Consensus       162 ~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---P~l~~~~i~~~~~G~r~~~~  238 (287)
                      .++ +.|+.+|.|..+.|+|+...+.         ..++.+++++++.++++++.|+   +++...++.+.|+|+||++.
T Consensus       330 DgR-ViFflPWqg~TIaGTTD~pt~v---------~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~  399 (680)
T KOG0042|consen  330 DGR-VIFFLPWQGKTIAGTTDIPTSV---------THSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVR  399 (680)
T ss_pred             CCc-EEEEeccCCceeeccCCCCCCC---------CCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCccccc
Confidence            244 6677779999999998875331         2355678899999999999998   34778899999999999999


Q ss_pred             CCCC------CCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          239 GPRQ------SPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       239 ~~~~------~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ||..      ..++.++...+    +||+.++|.   .||+...+|+...+.+.
T Consensus       400 DP~~~~~t~sl~R~H~v~~~~----~gLiTIaGG---KWTTyR~MAEeTVd~aI  446 (680)
T KOG0042|consen  400 DPKKVKDTQSLVRNHFVFVSP----SGLITIAGG---KWTTYRHMAEETVDAAI  446 (680)
T ss_pred             CCCccccchhhhhhceEEecC----CCeEEEecC---cchhHHHHHHHHHHHHH
Confidence            8711      22445666665    699999884   89999999999888653

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=99.71  E-value=1.8e-16  Score=136.95  Aligned_cols=214  Identities=18%  Similarity=0.211  Sum_probs=154.6

Q ss_pred             eeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccC
Q 023079           11 GLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNW   90 (287)
Q Consensus        11 ~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~   90 (287)
                      +++.|+.+|+. ++|.-. .-|++. .....++.+++..|.+.+.++|++|.. .+|.+++..        .        
T Consensus       121 ~fr~l~e~EL~-~f~~~~-~~G~~~-Tt~~sE~~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~--------~--------  180 (342)
T KOG3923|consen  121 GFRDLTERELL-GFPDYS-TYGIHF-TTYLSEGPKYLPYLKKRLTENGVEFVQ-RRVESLEEV--------A--------  180 (342)
T ss_pred             hhhcCCHHHhc-CCCCcc-ccceeE-EEeeccchhhhHHHHHHHHhcCcEEEE-eeeccHHHh--------c--------
Confidence            46777777776 555432 123332 355678899999999999999999985 577776532        1        


Q ss_pred             CCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCceeEEee
Q 023079           91 DGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTL  170 (287)
Q Consensus        91 ~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  170 (287)
                                .=.+|+||||+|.|+..|+   |+.+  +.|    .||+.+.++.+   ++++.+|.  +  +..-|++|
T Consensus       181 ----------~~~~DVivNCtGL~a~~L~---gDd~--~yP----iRGqVl~V~Ap---Wvkhf~~~--D--~~~ty~iP  234 (342)
T KOG3923|consen  181 ----------RPEYDVIVNCTGLGAGKLA---GDDD--LYP----IRGQVLKVDAP---WVKHFIYR--D--FSRTYIIP  234 (342)
T ss_pred             ----------cCCCcEEEECCcccccccc---CCcc--eee----ccceEEEeeCC---ceeEEEEe--c--CCccEEec
Confidence                      1238999999999999997   3222  455    99999999874   66777775  2  12135666


Q ss_pred             ecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCCCCCCCeEEe
Q 023079          171 DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQ  250 (287)
Q Consensus       171 ~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i~  250 (287)
                      - .+.+.+|++.+.           +.++...++++...++++..++.|.|..+.++..|+|+||.-..- .-..+ ++.
T Consensus       235 ~-~~~V~lGg~~Q~-----------g~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~Rk~v-RlE~e-~~~  300 (342)
T KOG3923|consen  235 G-TESVTLGGTKQE-----------GNWNLEITDEDRRDILERCCALEPSLRHAEIIREWVGLRPGRKQV-RLEAE-LRT  300 (342)
T ss_pred             C-CceEEEcccccc-----------CcccCcCChhhHHHHHHHHHHhCcccccceehhhhhcccCCCCce-eeeee-eec
Confidence            4 677899987764           457778889999999999999999999999999999999984320 00000 111


Q ss_pred             cCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          251 GDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       251 ~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ...  ...-+++..||+|+|+|++.++|-.++.+++
T Consensus       301 ~~~--k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~  334 (342)
T KOG3923|consen  301 RGG--KRLTVVHNYGHGGNGFTLGWGTALEAAKLVL  334 (342)
T ss_pred             CCC--ccceeEeeccCCCCceecccchHHHHHHHHH
Confidence            111  2234589999999999999999988887764

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=99.56  E-value=1.4e-13  Score=118.67  Aligned_cols=214  Identities=16%  Similarity=-0.004  Sum_probs=144.1

Q ss_pred             CCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           36 PASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        36 p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .+.++++|..+++.++..|++.| |++..+ .|.++..+.+++. |-....           .++....+++++|+++|+
T Consensus       139 ~ttaqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~-----------~~ti~~~d~~~ivvsaGP  206 (380)
T KOG2852|consen  139 NTTAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEA-----------EDTIIKADVHKIVVSAGP  206 (380)
T ss_pred             CccceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhh-----------cCceEEeeeeEEEEecCC
Confidence            46789999999999999998775 888875 6777765555543 322211           122347899999999999


Q ss_pred             CchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCc------eeEEeeecCC-cEEECCCccccC
Q 023079          114 SAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL------GVHVTLDLDG-QIKFGPDVEWID  186 (287)
Q Consensus       114 ~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~g-~l~iG~~~~~~~  186 (287)
                      |++.|+..++         ++-.+-..+.+++.....-++.++-+-...+.      -.|.++  ++ .+++|.++...-
T Consensus       207 WTskllp~~r---------IsglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rk--d~Evyicg~~~~e~~  275 (380)
T KOG2852|consen  207 WTSKLLPFTR---------ISGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARK--DREVYICGETDKEHL  275 (380)
T ss_pred             Cchhhccccc---------cceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecC--CceEEEecCCCcccc
Confidence            9999976542         11144456666654221112222221111111      134443  43 466775554321


Q ss_pred             CcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCC
Q 023079          187 GIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGI  266 (287)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~  266 (287)
                      -+      .+..+..++++.+..+.+.+..+.+.+.+..+....+=+.|....    ++-++||+.+    .++|+++||
T Consensus       276 lP------edsd~v~~npeki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~sn~----tg~PvIget~----sg~yVaagH  341 (380)
T KOG2852|consen  276 LP------EDSDDVFVNPEKIIELKEMADLVSSELTKSNVLDAQACFLPTSNI----TGIPVIGETK----SGVYVAAGH  341 (380)
T ss_pred             CC------cccccceeCHHHHHHHHHHHHHhhhhhccchhhhhhhccccccCC----CCCceEeecC----CceEEeecc
Confidence            11      023456678899999999999999999998888776766666433    3567999986    399999999


Q ss_pred             CCchhhhhHHHHHHHHHHHh
Q 023079          267 ESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       267 ~g~G~t~ap~~g~~va~~i~  286 (287)
                      +==|++.+|++|+.+||+|+
T Consensus       342 scWGItnaPaTG~~mAElll  361 (380)
T KOG2852|consen  342 SCWGITNAPATGKCMAELLL  361 (380)
T ss_pred             cccceecCcchhHHHHHHHh
Confidence            99999999999999999986

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.56  E-value=2.6e-13  Score=124.80  Aligned_cols=259  Identities=21%  Similarity=0.254  Sum_probs=171.3

Q ss_pred             Ceeeee-CHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCe-EEE
Q 023079           10 HGLRML-EGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNC-MNV   79 (287)
Q Consensus        10 ~~~~~L-~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~-~~V   79 (287)
                      +++++. |.++++++.|.+-       ..++.+.+.+..||-..|++.|.+.++++ |++++.+++|++|++.+++ |.|
T Consensus       139 ~~Me~sed~~~i~~w~PLvm~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v  218 (488)
T PF06039_consen  139 PGMEFSEDPEQIAEWAPLVMEGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEV  218 (488)
T ss_pred             CCcEEccCHHHHHhhCCeecCCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEE
Confidence            457777 7999999999872       56788999999999999999999999888 9999999999999998665 998


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC---CCCCcccCCccccceEEEEEcCCCC-CCCCcee
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI---GLDNVFIPPAYYARGCYFSLANTKV-APFKHLI  155 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~---~~~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~i  155 (287)
                      ++.+-.+          +...+++|+.|+++||.+|-.|++..|   +..+--.|    +-|++++.+++.. ..-+.-+
T Consensus       219 ~~~~~~~----------~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfP----VsG~fl~~~n~~vv~~H~aKV  284 (488)
T PF06039_consen  219 KVKDLKT----------GEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFP----VSGQFLRCKNPEVVAQHNAKV  284 (488)
T ss_pred             EEEecCC----------CCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCc----ccceEEecCCHHHHHHhccee
Confidence            7754321          124589999999999999999999884   12344456    8899988875411 0112334


Q ss_pred             eeCCCCC---CceeEEee-ecCC--cEEECCCccccCC-----c-cccc---------cc----ccccc---cCCC--hh
Q 023079          156 YPIPEDG---GLGVHVTL-DLDG--QIKFGPDVEWIDG-----I-DDTL---------SF----LNRFD---YSVN--AN  205 (287)
Q Consensus       156 ~~~~~~~---~~~~~~~~-~~~g--~l~iG~~~~~~~~-----~-~~~~---------~~----~~~~~---~~~~--~~  205 (287)
                      |......   ..-.|+-+ -.+|  .++|||++.+..-     + -|..         .+    .++.+   |-+.  ..
T Consensus       285 Ygka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~  364 (488)
T PF06039_consen  285 YGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLDLFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQ  364 (488)
T ss_pred             eeeCCCCCCCccCccCCchhcCCCcceeecCccccchHHhcCCcHHHHHhhcCcccHHHHHHHHhhhhhHHHHHHHhhcc
Confidence            5432210   11134422 2345  4889998865210     0 0100         00    01111   0000  12


Q ss_pred             hHHHHHHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeE-EEeCCCCchhhhhHHHHHHHHH
Q 023079          206 RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLV-NLFGIESPGLTSSMAIAEYVAA  283 (287)
Q Consensus       206 ~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~-~~~G~~g~G~t~ap~~g~~va~  283 (287)
                      ..+..++.+++++|.+...++....+|+|+++..+ ....+...+|..-....+|.+ .+.|. |+|.++|..+.-.|.+
T Consensus       365 s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGTevI~s~dGsiaaLLGA-SPGASTav~iMl~vl~  443 (488)
T PF06039_consen  365 SKEDRMEALRKFYPSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGTEVITSADGSIAALLGA-SPGASTAVSIMLDVLE  443 (488)
T ss_pred             CHHHHHHHHHHhCccCChhceEEEecCceeeEEecCCCCCcEEecCceEEecCCCceEeeccC-CCChhhhHHHHHHHHH
Confidence            23455788999999999999999999999998875 111122344543222345744 45674 5999999887766655

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.64  E-value=6.2e-06  Score=72.94  Aligned_cols=205  Identities=14%  Similarity=0.143  Sum_probs=116.5

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ..++...+...|.+.+++.|++++.+++|+++..+++++.+....+.              .+++||.||+|+|.++. +
T Consensus        86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~--------------~~~~a~~vv~a~G~~s~-~  150 (295)
T TIGR02032        86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGE--------------GTVTAKIVIGADGSRSI-V  150 (295)
T ss_pred             EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCcc--------------EEEEeCEEEECCCcchH-H
Confidence            35788899999999999999999999999999888777766543331              27999999999999974 6


Q ss_pred             HHHhCCCCCcccCCccccceEEEEEcCCCCC-CCCc--eeeeCCCCCCceeEEeeecCCcEEECCCccccCCcccccccc
Q 023079          119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVA-PFKH--LIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFL  195 (287)
Q Consensus       119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~  195 (287)
                      .+.++ ...  .+ .....+....+...... .-+.  ..+........-.++.|..++++.+|.....           
T Consensus       151 ~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~-----------  215 (295)
T TIGR02032       151 AKKLG-LRK--EP-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRS-----------  215 (295)
T ss_pred             HHhcC-CCC--CC-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeecc-----------
Confidence            66663 321  11 01112222222211000 0011  1111110011225567766676777643211           


Q ss_pred             cccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCC--CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhh
Q 023079          196 NRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP--RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTS  273 (287)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~  273 (287)
                       . +   .....++.++...+.+|.+....+...+.+..|+....  ...++-+++|..-     +.+..  +.|.|+.+
T Consensus       216 -~-~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA-----~~~~P--~~g~G~~~  283 (295)
T TIGR02032       216 -A-E---EGEDLKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAA-----GHVKP--LTGEGIYY  283 (295)
T ss_pred             -C-C---CCCCHHHHHHHHHHhCcccccCcEEeeeceeeccCCCCCccccCCEEEEeccc-----CCCCC--ccCCcHHH
Confidence             0 1   22344556666666778887777777677666653210  0111123455542     11111  34568999


Q ss_pred             hHHHHHHHHHHH
Q 023079          274 SMAIAEYVAAKF  285 (287)
Q Consensus       274 ap~~g~~va~~i  285 (287)
                      |-.-|.++|+.|
T Consensus       284 a~~~a~~aa~~~  295 (295)
T TIGR02032       284 AMRSGDVAAEVI  295 (295)
T ss_pred             HHHHHHHHHhhC
Confidence            988888888753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02697 lycopene epsilon cyclase

Probab=98.35  E-value=4.6e-05  Score=73.47  Aligned_cols=203  Identities=11%  Similarity=0.077  Sum_probs=112.1

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      .++...+...|++.+.+.|++++ +++|+++..+++++. +.+.+|.               +++|+.||.|+|+|+..+
T Consensus       188 ~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~---------------~i~A~lVI~AdG~~S~rl  251 (529)
T PLN02697        188 RVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGR---------------VIPCRLATVASGAASGRL  251 (529)
T ss_pred             EEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCc---------------EEECCEEEECCCcChhhh
Confidence            58999999999999999999984 679999988777765 4455552               799999999999999655


Q ss_pred             HHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee---e---CC-----CCCC-ceeEEeeecCCcEEE-CCCcccc
Q 023079          119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY---P---IP-----EDGG-LGVHVTLDLDGQIKF-GPDVEWI  185 (287)
Q Consensus       119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~---~---~~-----~~~~-~~~~~~~~~~g~l~i-G~~~~~~  185 (287)
                      ...... . + .+......|..+.+....... +..++   .   .+     .... .-+|+.|..++++.+ ++.-  .
T Consensus       252 ~~~~~~-~-~-~~~~Q~a~Gi~ve~~~~~~d~-~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l--~  325 (529)
T PLN02697        252 LQYEVG-G-P-RVCVQTAYGVEVEVENNPYDP-SLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCL--A  325 (529)
T ss_pred             hccccC-C-C-CcccEEEEEEEEEecCCCCCc-chheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeee--c
Confidence            431100 1 1 111333677777776421111 11111   0   00     0001 114667776777777 3210  0


Q ss_pred             CCcccccccccccccCCChh-hHHHHHHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeEE-
Q 023079          186 DGIDDTLSFLNRFDYSVNAN-RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVN-  262 (287)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~-  262 (287)
                      +            ....+.+ ..+.+.+.+.+.  ++....+...-.|+.|+..+. ..+.+-+.+|..-     |++. 
T Consensus       326 ~------------~~~l~~~~l~~~L~~~l~~~--Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AA-----G~vhP  386 (529)
T PLN02697        326 S------------KDAMPFDLLKKRLMSRLETM--GIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAA-----SMVHP  386 (529)
T ss_pred             c------------CCCCCHHHHHHHHHHHHHhC--CCCcceEEEEEeeeecCCCCCcccCCCeeEeehhh-----cCCCC
Confidence            0            0111222 233455555543  455566777777888883221 1112223444432     3332 


Q ss_pred             EeCCCCchh----hhhHHHHHHHHHHHh
Q 023079          263 LFGIESPGL----TSSMAIAEYVAAKFL  286 (287)
Q Consensus       263 ~~G~~g~G~----t~ap~~g~~va~~i~  286 (287)
                      ++|   .|+    ..||..|+.+++.+.
T Consensus       387 sTG---y~v~~~l~~A~~~A~~ia~~l~  411 (529)
T PLN02697        387 ATG---YSVVRSLSEAPKYASVIARILK  411 (529)
T ss_pred             chh---hhHHHHHHhHHHHHHHHHHHhh
Confidence            233   245    556777777776653

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.30  E-value=5.7e-05  Score=71.21  Aligned_cols=68  Identities=16%  Similarity=0.117  Sum_probs=53.4

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ..++-..+-..|.+.|++.|++++++++|+++..+++.+.+.+.++.               +++|+.||.|+|.++ .+
T Consensus       103 ~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~---------------~i~A~~VI~A~G~~s-~l  166 (428)
T PRK10157        103 YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGD---------------VIEAKTVILADGVNS-IL  166 (428)
T ss_pred             eeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCc---------------EEECCEEEEEeCCCH-HH
Confidence            34566777788999999999999999999999887776643333341               799999999999975 56


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       167 ~~~l  170 (428)
T PRK10157        167 AEKL  170 (428)
T ss_pred             HHHc
Confidence            6666

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.29  E-value=9.7e-05  Score=68.45  Aligned_cols=61  Identities=21%  Similarity=0.359  Sum_probs=52.1

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +.++...+...|.+.+.+.|++++ .++|+++..+ ++.+.|++.+|.               +++|+.||.|+|.++
T Consensus        80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~---------------~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQ---------------RIQARLVIDARGFGP  141 (388)
T ss_pred             eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCC---------------EEEeCEEEECCCCch
Confidence            368999999999999999999997 5688888877 567788887772               799999999999997

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06185 hypothetical protein; Provisional

Probab=98.29  E-value=8.7e-05  Score=69.22  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             eeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           39 GIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..+.-..+...|.+.+.+. |++++++++|+++..+++.+. |+  +.+|              +.+++|+.||.|.|.+
T Consensus       103 ~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g--------------~~~i~a~~vI~AdG~~  168 (407)
T PRK06185        103 AMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDG--------------PGEIRADLVVGADGRH  168 (407)
T ss_pred             EEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCC--------------cEEEEeCEEEECCCCc
Confidence            3456667788888887764 899999999999988777652 43  3344              1269999999999999


Q ss_pred             chHHHHHhCCCCC
Q 023079          115 APALAKRFIGLDN  127 (287)
Q Consensus       115 s~~l~~~~~~~~~  127 (287)
                      |. +.+.+ ++..
T Consensus       169 S~-vr~~~-gi~~  179 (407)
T PRK06185        169 SR-VRALA-GLEV  179 (407)
T ss_pred             hH-HHHHc-CCCc
Confidence            86 66666 4443

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.29  E-value=4e-06  Score=78.06  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=59.5

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-chH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APA  117 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~-s~~  117 (287)
                      .+-..++..+|.+.++++|++|+.+++|+++..+++++. |.|.++.             ..+++||+||+|+|+| +..
T Consensus       259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~-------------~~~l~AD~vVLAaGaw~S~g  325 (419)
T TIGR03378       259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHR-------------DIPLRADHFVLASGSFFSNG  325 (419)
T ss_pred             CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCc-------------cceEECCEEEEccCCCcCHH
Confidence            345678999999999999999999999999998888775 6665541             1279999999999999 999


Q ss_pred             HHHHhC
Q 023079          118 LAKRFI  123 (287)
Q Consensus       118 l~~~~~  123 (287)
                      |.+.+.
T Consensus       326 L~a~l~  331 (419)
T TIGR03378       326 LVAEFD  331 (419)
T ss_pred             HHhhcC
Confidence            987763

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.29  E-value=4.9e-05  Score=70.60  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=59.2

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ..++...+...|.+.+++.|++++++++|+++..+++++.|++++|.               +++||.||.|.|.++ .+
T Consensus       108 ~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vV~AdG~~S-~v  171 (392)
T PRK08773        108 WIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGR---------------RLEAALAIAADGAAS-TL  171 (392)
T ss_pred             EEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hH
Confidence            35677889999999999999999999999999988888888887772               799999999999999 57


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       172 r~~~  175 (392)
T PRK08773        172 RELA  175 (392)
T ss_pred             HHhh
Confidence            7766

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.23  E-value=9.7e-05  Score=68.72  Aligned_cols=68  Identities=24%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ..++...+...|.+.+.+.|++++.+++|+++..+++.+.|++.+|.               +++||.||.|.|.++. +
T Consensus       106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~AdG~~S~-v  169 (403)
T PRK07333        106 HMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS---------------VLEARLLVAADGARSK-L  169 (403)
T ss_pred             EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEEcCCCChH-H
Confidence            36788899999999999999999999999999988888888887772               7999999999999986 6


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       170 r~~~  173 (403)
T PRK07333        170 RELA  173 (403)
T ss_pred             HHHc
Confidence            6666

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.21  E-value=8.5e-05  Score=68.73  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             eeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           39 GIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..++...+...|.+.+++.| ++++ +++|+++..+++.+.|++.+|.               +++||.||.|.|.||. 
T Consensus       106 ~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~adG~~S~-  168 (388)
T PRK07608        106 WIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQ---------------VLRADLVVGADGAHSW-  168 (388)
T ss_pred             EEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCC---------------EEEeeEEEEeCCCCch-
Confidence            45788899999999999887 9998 8899999887788889888772               7999999999999986 


Q ss_pred             HHHHh
Q 023079          118 LAKRF  122 (287)
Q Consensus       118 l~~~~  122 (287)
                      +.+.+
T Consensus       169 vr~~~  173 (388)
T PRK07608        169 VRSQA  173 (388)
T ss_pred             HHHhc
Confidence            66666

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.15  E-value=0.00016  Score=66.70  Aligned_cols=68  Identities=13%  Similarity=0.183  Sum_probs=58.1

Q ss_pred             eeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           39 GIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..++-..+...|.+.+.+.| ++++.+++|+++...++++.|++++|.               ++++|.||.|.|.+|. 
T Consensus       101 ~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~vi~adG~~S~-  164 (385)
T TIGR01988       101 YVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQ---------------QLRARLLVGADGANSK-  164 (385)
T ss_pred             EEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCC---------------EEEeeEEEEeCCCCCH-
Confidence            35677889999999999888 999999999999888888888888772               7999999999999985 


Q ss_pred             HHHHh
Q 023079          118 LAKRF  122 (287)
Q Consensus       118 l~~~~  122 (287)
                      +.+.+
T Consensus       165 vr~~l  169 (385)
T TIGR01988       165 VRQLA  169 (385)
T ss_pred             HHHHc
Confidence            55655

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.14  E-value=0.00016  Score=66.85  Aligned_cols=68  Identities=12%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             eeecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           39 GIVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..++...+...|.+.+.+ .|++++.+++|+++..+++++.|++++|.               +++||.||.|.|.||. 
T Consensus       100 ~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vV~AdG~~S~-  163 (382)
T TIGR01984       100 YVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQ---------------QLRAKLLIAADGANSK-  163 (382)
T ss_pred             EEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCChH-
Confidence            347888999999999988 49999999999999888888888887762               7999999999999975 


Q ss_pred             HHHHh
Q 023079          118 LAKRF  122 (287)
Q Consensus       118 l~~~~  122 (287)
                      +.+.+
T Consensus       164 vr~~l  168 (382)
T TIGR01984       164 VRELL  168 (382)
T ss_pred             HHHHc
Confidence            66666

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02463 lycopene beta cyclase

Probab=98.03  E-value=0.00035  Score=66.23  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +.++...+...|.+.+.+.|++++ .++|++++..++++.|++++|.               +++|+.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~---------------~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGV---------------KIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECcCCCcC
Confidence            568999999999999999999997 4799999988888889998883               7999999999999765

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.99  E-value=0.00073  Score=63.02  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=57.3

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      .++...+..+|.+.+++.|++++++++|++++..++++.|++.+|.               +++||.||.|.|.|| .+-
T Consensus       108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vVgAdG~~S-~vR  171 (405)
T PRK05714        108 IVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR---------------QLRAPLVVAADGANS-AVR  171 (405)
T ss_pred             EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hhH
Confidence            4566777788888888889999999999999988888988888772               799999999999999 566


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       172 ~~l  174 (405)
T PRK05714        172 RLA  174 (405)
T ss_pred             Hhc
Confidence            666

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.96  E-value=0.00067  Score=62.85  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=53.2

Q ss_pred             ecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           41 VDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      ++-..+-..|.+.+.+ .|++++++++|+++..++++|.|++++|.               +++||.||.|.|.|+. +.
T Consensus       109 ~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr  172 (395)
T PRK05732        109 VELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGE---------------TLTGRLLVAADGSHSA-LR  172 (395)
T ss_pred             EEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCChh-hH
Confidence            4445566777777665 48999999999999888888989887772               7999999999999985 66


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       173 ~~~  175 (395)
T PRK05732        173 EAL  175 (395)
T ss_pred             Hhh
Confidence            666

>TIGR02730 carot_isom carotene isomerase

Probab=97.93  E-value=3.5e-05  Score=73.99  Aligned_cols=70  Identities=21%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           30 VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        30 ~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      .+|++.|.+|.   ..++.+|.+.++++|++|+++++|++|..++++ +.|++.+|.               +++||+||
T Consensus       218 ~~g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~---------------~~~ad~vV  279 (493)
T TIGR02730       218 YGGINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGE---------------KIYAKRIV  279 (493)
T ss_pred             cceEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCC---------------EEEcCEEE
Confidence            46889999998   579999999999999999999999999887664 468888772               79999999


Q ss_pred             EcCCCCchH
Q 023079          109 NSAGLSAPA  117 (287)
Q Consensus       109 ~aaG~~s~~  117 (287)
                      +|+|+|...
T Consensus       280 ~a~~~~~~~  288 (493)
T TIGR02730       280 SNATRWDTF  288 (493)
T ss_pred             ECCChHHHH
Confidence            999998543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.92  E-value=0.0017  Score=60.13  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=98.7

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ..++...+-..+.+.+++.|+. +.++.|+++...++.+.|++++|.               +++|+.||.|.|..+. .
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~~~-~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~a~~VvDa~g~~~~-~  144 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGGVI-RLNARVTSIEETGDGVLVVLADGR---------------TIRARVVVDARGPSSP-K  144 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCCeE-EEccEEEEEEecCceEEEEECCCC---------------EEEeeEEEECCCcccc-c
Confidence            4789999999999999955554 557899999998888888998883               8999999999996555 1


Q ss_pred             HHHhCCCCCcccCCccccceEEEEEcCCCCCC-CCc-eeeeCCCC-CCc-eeEEeeecCCcEEECCCccccCCccccccc
Q 023079          119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAP-FKH-LIYPIPED-GGL-GVHVTLDLDGQIKFGPDVEWIDGIDDTLSF  194 (287)
Q Consensus       119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~-~~~-~i~~~~~~-~~~-~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~  194 (287)
                      ..     ......    ..|..+.++.+...+ ... .-|.++.. .+. -+|+.|...++.+|..|.- ..        
T Consensus       145 ~~-----~~~~Q~----f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~f-s~--------  206 (374)
T PF05834_consen  145 AR-----PLGLQH----FYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSF-SP--------  206 (374)
T ss_pred             cc-----ccccce----eEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEE-cC--------
Confidence            11     111112    456666665431111 111 11222222 112 2566787778888864421 11        


Q ss_pred             ccccccCCChhh-HHHHHHHHhhhCCCCCCCCccccccccccee
Q 023079          195 LNRFDYSVNANR-AERFYPEIRKYYPDLRDGSLQPSYAGIRPKL  237 (287)
Q Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~  237 (287)
                          ...++.+. .+.+.+.+.+  -++...+|.+.-.|+.|+.
T Consensus       207 ----~~~~~~~~~~~~l~~~l~~--~g~~~~~i~~~E~G~IPm~  244 (374)
T PF05834_consen  207 ----RPALPEEELKARLRRYLER--LGIDDYEILEEERGVIPMT  244 (374)
T ss_pred             ----CCCCCHHHHHHHHHHHHHH--cCCCceeEEEeecceeecc
Confidence                11123333 3455556655  3677788888899999993

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.92  E-value=0.00063  Score=63.06  Aligned_cols=67  Identities=18%  Similarity=0.292  Sum_probs=56.7

Q ss_pred             eecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           40 IVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      .++...+...|.+.+++. |++++++++|+++..+++++.|++++|.               +++||.||.|.|.+|. +
T Consensus       108 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-v  171 (391)
T PRK08020        108 MVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGE---------------EIQAKLVIGADGANSQ-V  171 (391)
T ss_pred             EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCC---------------EEEeCEEEEeCCCCch-h
Confidence            467778888888888876 9999999999999888788888887772               7999999999999995 6


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       172 R~~~  175 (391)
T PRK08020        172 RQMA  175 (391)
T ss_pred             HHHc
Confidence            5655

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.91  E-value=0.0016  Score=60.74  Aligned_cols=71  Identities=25%  Similarity=0.285  Sum_probs=58.3

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++-..+.+.|++.|++.|++++.++.|.++..+++++.+.+..+.              .+++|++||.|.|+.+ .
T Consensus        89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--------------~e~~a~~vI~AdG~~s-~  153 (396)
T COG0644          89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--------------DEVRAKVVIDADGVNS-A  153 (396)
T ss_pred             eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--------------EEEEcCEEEECCCcch-H
Confidence            667889999999999999999999999999999999887765544441              2899999999999864 4


Q ss_pred             HHHHhC
Q 023079          118 LAKRFI  123 (287)
Q Consensus       118 l~~~~~  123 (287)
                      +.+.++
T Consensus       154 l~~~lg  159 (396)
T COG0644         154 LARKLG  159 (396)
T ss_pred             HHHHhC
Confidence            556663

>PRK06847 hypothetical protein; Provisional

Probab=97.87  E-value=0.0047  Score=56.83  Aligned_cols=69  Identities=22%  Similarity=0.175  Sum_probs=58.2

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++...+...|.+.+.+.|++++.+++|++++..++.+.|.+.+|.               +++||.||.|.|.++.-
T Consensus       101 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        101 GGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGT---------------TGRYDLVVGADGLYSKV  165 (375)
T ss_pred             cccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCC---------------EEEcCEEEECcCCCcch
Confidence            345677888999999998899999999999999888888888887772               79999999999999876


Q ss_pred             HHHH
Q 023079          118 LAKR  121 (287)
Q Consensus       118 l~~~  121 (287)
                      -...
T Consensus       166 r~~l  169 (375)
T PRK06847        166 RSLV  169 (375)
T ss_pred             hhHh
Confidence            5433

>PRK10015 oxidoreductase; Provisional

Probab=97.78  E-value=0.0017  Score=61.37  Aligned_cols=67  Identities=24%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+.-..+-..|.+.|++.|++++.+++|+++..+++++. |.+.+.                +++|+.||.|.|.++ .
T Consensus       103 ~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~----------------~i~A~~VI~AdG~~s-~  165 (429)
T PRK10015        103 YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDD----------------ILEANVVILADGVNS-M  165 (429)
T ss_pred             eEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCe----------------EEECCEEEEccCcch-h
Confidence            3445566667788889999999999999999988777765 555433                799999999999975 4


Q ss_pred             HHHHh
Q 023079          118 LAKRF  122 (287)
Q Consensus       118 l~~~~  122 (287)
                      +.+.+
T Consensus       166 v~~~l  170 (429)
T PRK10015        166 LGRSL  170 (429)
T ss_pred             hhccc
Confidence            55555

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.75  E-value=0.00012  Score=66.89  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=59.6

Q ss_pred             eEEcCCceeecH-----HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCE
Q 023079           32 ALLSPASGIVDS-----HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKL  106 (287)
Q Consensus        32 al~~p~~g~vdp-----~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~  106 (287)
                      .++..+.|++-|     ..++.+|.+++++.||+++++++|.+++.++....|.|++|.               +|+||.
T Consensus        94 ~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~---------------~i~~d~  158 (408)
T COG2081          94 ALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGE---------------TVKCDS  158 (408)
T ss_pred             eeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCC---------------EEEccE
Confidence            567788887755     488999999999999999999999999998888999999992               799999


Q ss_pred             EEEcCCC
Q 023079          107 VVNSAGL  113 (287)
Q Consensus       107 VV~aaG~  113 (287)
                      +|+|+|.
T Consensus       159 lilAtGG  165 (408)
T COG2081         159 LILATGG  165 (408)
T ss_pred             EEEecCC
Confidence            9999994

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.70  E-value=0.0083  Score=55.72  Aligned_cols=74  Identities=14%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      .++-..+-..|.+.|.+.|++++.. .|+++...++.+.|++.++.       +...++..+++|+.||.|.|.+|. +.
T Consensus        88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~-------~~~~~~~~~i~a~~VI~AdG~~S~-v~  158 (388)
T TIGR02023        88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPK-------KGAGGEKGSVEADVVIGADGANSP-VA  158 (388)
T ss_pred             eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEecc-------ccCCCcceEEEeCEEEECCCCCcH-HH
Confidence            4777788888999999999999865 69999888788877655320       000112347999999999999884 55


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       159 r~l  161 (388)
T TIGR02023       159 KEL  161 (388)
T ss_pred             HHc
Confidence            666

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.69  E-value=0.00021  Score=69.96  Aligned_cols=72  Identities=18%  Similarity=0.109  Sum_probs=57.2

Q ss_pred             EcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEe--cCCcccccCCCCCCCCCceeEec-CEEEE
Q 023079           34 LSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI--SESKNLRNWDGVSPLQPELTLIP-KLVVN  109 (287)
Q Consensus        34 ~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t--~~g~~~~~~~~~~~~~~~~~i~a-~~VV~  109 (287)
                      +.+..+.+++..++.+|.+.|+++|++|+++++|+++..+++++. |..  .++              ...++| +.||+
T Consensus       207 ~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~--------------~~~i~a~k~VVl  272 (581)
T PRK06134        207 HGRGMHLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGG--------------LQEIRARKGVVL  272 (581)
T ss_pred             ccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCc--------------EEEEEeCCEEEE
Confidence            345566789999999999999999999999999999987766553 443  233              236889 99999


Q ss_pred             cCCCCchHHH
Q 023079          110 SAGLSAPALA  119 (287)
Q Consensus       110 aaG~~s~~l~  119 (287)
                      |+|.|+..+.
T Consensus       273 AtGg~~~n~~  282 (581)
T PRK06134        273 AAGGFPHDPA  282 (581)
T ss_pred             cCCCcccCHH
Confidence            9999997653

>PLN02612 phytoene desaturase

Probab=97.68  E-value=0.0061  Score=59.66  Aligned_cols=57  Identities=11%  Similarity=0.186  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      |..++..|++..+++|++|+++++|++|..++++  +.|++.+|.               .++||+||+|+.+.
T Consensus       307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~---------------~~~ad~VI~a~p~~  365 (567)
T PLN02612        307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGS---------------VVEGDVYVSATPVD  365 (567)
T ss_pred             hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCc---------------EEECCEEEECCCHH
Confidence            3678899999888899999999999999886444  347776662               79999999998763

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.66  E-value=0.00017  Score=60.33  Aligned_cols=63  Identities=21%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ......+...|...+++.+.+++++++|+++.+.+++|.|++.+++               +++|++||+|+|.++..
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~---------------~~~a~~VVlAtG~~~~p  140 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGR---------------TIRADRVVLATGHYSHP  140 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS----------------EEEEEEEEE---SSCSB
T ss_pred             cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecc---------------eeeeeeEEEeeeccCCC
Confidence            4566677777777888999999999999999999888999998883               79999999999986543

...

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.65  E-value=0.002  Score=59.60  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      .++...+...|.+.+.+++...+.+++|++++.+++++.|++++|.               +++||.||.|.|.+|. +.
T Consensus       107 ~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr  170 (388)
T PRK07494        107 NIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGT---------------TLSARLVVGADGRNSP-VR  170 (388)
T ss_pred             EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCC---------------EEEEeEEEEecCCCch-hH
Confidence            5677788899998888875433779999999988888999887772               7999999999999985 65


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       171 ~~~  173 (388)
T PRK07494        171 EAA  173 (388)
T ss_pred             Hhc
Confidence            665

>PRK07233 hypothetical protein; Provisional

Probab=97.63  E-value=0.016  Score=54.28  Aligned_cols=64  Identities=17%  Similarity=0.107  Sum_probs=52.2

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      ++.|.+|   ...++.+|++.++++|++++.+++|++|+.+++++.+.+.++.               +++||+||+|+.
T Consensus       190 ~~~~~gG---~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~---------------~~~ad~vI~a~p  251 (434)
T PRK07233        190 LGYLEGG---FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGE---------------EEDFDAVISTAP  251 (434)
T ss_pred             EeccCCC---HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCc---------------eEECCEEEECCC
Confidence            5566666   3679999999999999999999999999988877765444442               799999999998


Q ss_pred             CC
Q 023079          113 LS  114 (287)
Q Consensus       113 ~~  114 (287)
                      +.
T Consensus       252 ~~  253 (434)
T PRK07233        252 PP  253 (434)
T ss_pred             HH
Confidence            63

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.61  E-value=0.0047  Score=57.70  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             ecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           41 VDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      +....+...|.+.+.+. |++++++++|++++.+++.+.|++.++.            .+.+++||.||.|.|.+| .+.
T Consensus       118 ~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~------------~~~~i~adlvIgADG~~S-~vR  184 (415)
T PRK07364        118 GEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEG------------KQQTLQSKLVVAADGARS-PIR  184 (415)
T ss_pred             EecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCC------------cceEEeeeEEEEeCCCCc-hhH
Confidence            34456778888777765 7999999999999888778877765331            123699999999999998 444


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       185 ~~~  187 (415)
T PRK07364        185 QAA  187 (415)
T ss_pred             HHh
Confidence            555

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.57  E-value=0.00029  Score=67.67  Aligned_cols=68  Identities=25%  Similarity=0.285  Sum_probs=58.3

Q ss_pred             ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           30 VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        30 ~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      .+|+|.|.+|.   ..++.+|.+.++++|++|+++++|++|..++++ +.|++.+|.               +++||+||
T Consensus       208 ~~g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~---------------~~~ad~VI  269 (502)
T TIGR02734       208 EWGVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGE---------------RLDADAVV  269 (502)
T ss_pred             hceEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCC---------------EEECCEEE
Confidence            46788888886   689999999999999999999999999987765 578888872               79999999


Q ss_pred             EcCCCCc
Q 023079          109 NSAGLSA  115 (287)
Q Consensus       109 ~aaG~~s  115 (287)
                      +|++...
T Consensus       270 ~a~~~~~  276 (502)
T TIGR02734       270 SNADLHH  276 (502)
T ss_pred             ECCcHHH
Confidence            9999743

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08244 hypothetical protein; Provisional

Probab=97.55  E-value=0.013  Score=56.34  Aligned_cols=67  Identities=18%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      +.-..+-..|.+.+++.|++++.+++|+++..+++++.|+..  +|              +.+++||+||.|.|.+|. +
T Consensus        97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g--------------~~~i~a~~vVgADG~~S~-v  161 (493)
T PRK08244         97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDG--------------LRTLTSSYVVGADGAGSI-V  161 (493)
T ss_pred             ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCc--------------cEEEEeCEEEECCCCChH-H
Confidence            344456677777788889999999999999888887766543  33              127999999999999984 5


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       162 R~~l  165 (493)
T PRK08244        162 RKQA  165 (493)
T ss_pred             HHhc
Confidence            5555

>PRK09126 hypothetical protein; Provisional

Probab=97.47  E-value=0.006  Score=56.50  Aligned_cols=66  Identities=14%  Similarity=0.222  Sum_probs=51.6

Q ss_pred             ecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           41 VDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      +.-..+.+.|.+.+.+ .|++++++++|++++.+++.+.|++++|.               +++||.||.|.|.++. +.
T Consensus       107 ~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr  170 (392)
T PRK09126        107 VPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGR---------------RLTARLLVAADSRFSA-TR  170 (392)
T ss_pred             EeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCC---------------EEEeCEEEEeCCCCch-hh
Confidence            3445566677766654 69999999999999887778888887772               7999999999999874 55


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       171 ~~~  173 (392)
T PRK09126        171 RQL  173 (392)
T ss_pred             Hhc
Confidence            555

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.46  E-value=0.00039  Score=65.07  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=48.0

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc-----
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA-----  115 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s-----  115 (287)
                      ....++.+|.+.++++|++++++++|.++..++++ +.|+++++.               ++.||.||+|+|.-|     
T Consensus       107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~---------------~~~a~~vILAtGG~S~p~~G  171 (409)
T PF03486_consen  107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGG---------------EYEADAVILATGGKSYPKTG  171 (409)
T ss_dssp             -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTE---------------EEEESEEEE----SSSGGGT
T ss_pred             cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcc---------------cccCCEEEEecCCCCccccC
Confidence            56788999999999999999999999999988776 889994431               899999999999765     


Q ss_pred             -----hHHHHHhC
Q 023079          116 -----PALAKRFI  123 (287)
Q Consensus       116 -----~~l~~~~~  123 (287)
                           -.+++.+|
T Consensus       172 S~G~gy~~a~~lG  184 (409)
T PF03486_consen  172 SDGSGYRIAKKLG  184 (409)
T ss_dssp             -SSHHHHHHHHTT
T ss_pred             CCcHHHHHHHHCC
Confidence                 44667663

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.42  E-value=0.0012  Score=60.96  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=53.0

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc------
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA------  115 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s------  115 (287)
                      .+...+.+|..+++++||+++++++|++|  +++++.|.+..+.              ..++||.||+|+|.-+      
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~--------------~~~~a~~vIlAtGG~s~p~~Gs  147 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQ--------------STIEADAVVLALGGASWSQLGS  147 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCc--------------eEEecCEEEEcCCCccccccCC
Confidence            45788999999999999999999999999  4446888775431              1699999999999865      


Q ss_pred             ----hHHHHHhC
Q 023079          116 ----PALAKRFI  123 (287)
Q Consensus       116 ----~~l~~~~~  123 (287)
                          -.+++.+|
T Consensus       148 ~g~gy~la~~lG  159 (376)
T TIGR03862       148 DGAWQQVLDQRG  159 (376)
T ss_pred             CcHHHHHHHHCC
Confidence                36677774

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR00275 flavoprotein, HI0933 family

Probab=97.42  E-value=0.0016  Score=60.86  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc-------
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA-------  115 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s-------  115 (287)
                      ...++..|.+.+++.|++++++++|+++..+++.+.|+++++                ++.||.||+|+|.++       
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~----------------~i~ad~VIlAtG~~s~p~~gs~  167 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGG----------------EYEADKVILATGGLSYPQLGST  167 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCc----------------EEEcCEEEECCCCcccCCCCCC
Confidence            467888999999999999999999999988777788887543                799999999999976       


Q ss_pred             ---hHHHHHhC
Q 023079          116 ---PALAKRFI  123 (287)
Q Consensus       116 ---~~l~~~~~  123 (287)
                         ..+++.+|
T Consensus       168 G~g~~la~~lG  178 (400)
T TIGR00275       168 GDGYEIAESLG  178 (400)
T ss_pred             cHHHHHHHHCC
Confidence               56777774

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.39  E-value=0.00084  Score=58.94  Aligned_cols=73  Identities=26%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eE-EEEecCCcccccCCCCC---CCCCceeEecCEEEEcCCC
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVS---PLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~---~~~~~~~i~a~~VV~aaG~  113 (287)
                      ..+|+..++..|.+.|+++|++++++++|.++..+++ ++ .|.+...       .+.   ....+..++|+.||+|+|.
T Consensus        99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~-------~v~~~g~~~~~~~i~Ak~VI~ATG~  171 (257)
T PRK04176         99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWT-------PVEMAGLHVDPLTIEAKAVVDATGH  171 (257)
T ss_pred             eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccc-------cccccCCCCCcEEEEcCEEEEEeCC
Confidence            3578999999999999999999999999999987554 43 3433211       000   0113468999999999999


Q ss_pred             CchHH
Q 023079          114 SAPAL  118 (287)
Q Consensus       114 ~s~~l  118 (287)
                      ++.-.
T Consensus       172 ~a~v~  176 (257)
T PRK04176        172 DAEVV  176 (257)
T ss_pred             CcHHH
Confidence            99754

>PRK06834 hypothetical protein; Provisional

Probab=97.22  E-value=0.0032  Score=60.44  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI  123 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~  123 (287)
                      ..+-..|.+.+++.|++++.+++|++++.+++++.|++.+|.               +++||+||.|.|.+|. +-+.+ 
T Consensus       100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~---------------~i~a~~vVgADG~~S~-vR~~l-  162 (488)
T PRK06834        100 NHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGR---------------TLRAQYLVGCDGGRSL-VRKAA-  162 (488)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCCC-cHhhc-
Confidence            455667777888889999999999999988888888876662               7999999999999984 65666 


Q ss_pred             CCC
Q 023079          124 GLD  126 (287)
Q Consensus       124 ~~~  126 (287)
                      ++.
T Consensus       163 gi~  165 (488)
T PRK06834        163 GID  165 (488)
T ss_pred             CCC
Confidence            443

>PRK06996 hypothetical protein; Provisional

Probab=97.11  E-value=0.033  Score=51.92  Aligned_cols=71  Identities=13%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      .++-..+...|.+.+++.|++++.++++++++..+++|.|+..++..+            .+++||.||.|-|.-+..+-
T Consensus       111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~------------~~i~a~lvIgADG~~~s~~r  178 (398)
T PRK06996        111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGA------------RTLRARIAVQAEGGLFHDQK  178 (398)
T ss_pred             EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcc------------eEEeeeEEEECCCCCchHHH
Confidence            567778899999999999999999999999988888888887654211            27999999999996433333


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       179 ~~~  181 (398)
T PRK06996        179 ADA  181 (398)
T ss_pred             HHc
Confidence            554

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.10  E-value=0.0029  Score=58.92  Aligned_cols=75  Identities=17%  Similarity=0.140  Sum_probs=65.9

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      ++.|.-|+-.-...+..+.+..+..|++|+++++|.++..+++.+ .|.+++|.               .|.||+||+|.
T Consensus       162 ~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~---------------~i~~~~vvlA~  226 (486)
T COG2509         162 IYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGE---------------EIEADYVVLAP  226 (486)
T ss_pred             ccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCc---------------EEecCEEEEcc
Confidence            567788888888999999999999999999999999999988754 58888883               89999999999


Q ss_pred             CCCchHHHHHh
Q 023079          112 GLSAPALAKRF  122 (287)
Q Consensus       112 G~~s~~l~~~~  122 (287)
                      |..+...++++
T Consensus       227 Grsg~dw~~~l  237 (486)
T COG2509         227 GRSGRDWFEML  237 (486)
T ss_pred             CcchHHHHHHH
Confidence            99888887766

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.03  E-value=0.0031  Score=58.55  Aligned_cols=68  Identities=16%  Similarity=0.319  Sum_probs=56.6

Q ss_pred             eecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           40 IVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      .++...+...|.+.+.+.| ++++++++|+++..+++++.|++.+|.               +++||.||.|.|.||.-.
T Consensus       105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~~r  169 (396)
T PRK08163        105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGN---------------RWTGDALIGCDGVKSVVR  169 (396)
T ss_pred             EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCC---------------EEecCEEEECCCcChHHH
Confidence            4677888899999888764 999999999999887778888887772               799999999999998765


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      ....
T Consensus       170 ~~~~  173 (396)
T PRK08163        170 QSLV  173 (396)
T ss_pred             hhcc
Confidence            4433

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.02  E-value=0.0027  Score=59.97  Aligned_cols=69  Identities=17%  Similarity=0.089  Sum_probs=52.6

Q ss_pred             cCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE---EEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           35 SPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM---NVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        35 ~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~---~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      .|.++..+...++..|.+.+++.|++++++++|+++..+ ++++   .+.+.++             +...+.++.||+|
T Consensus       121 ~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-------------~~~~~~a~~VVlA  187 (439)
T TIGR01813       121 RPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGK-------------GIYIKAAKAVVLA  187 (439)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCC-------------eEEEEecceEEEe
Confidence            344555677889999999999999999999999999875 3433   3333333             1235789999999


Q ss_pred             CCCCch
Q 023079          111 AGLSAP  116 (287)
Q Consensus       111 aG~~s~  116 (287)
                      +|.|+.
T Consensus       188 tGg~~~  193 (439)
T TIGR01813       188 TGGFGS  193 (439)
T ss_pred             cCCCCC
Confidence            999987

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.90  E-value=0.004  Score=61.04  Aligned_cols=70  Identities=13%  Similarity=0.043  Sum_probs=53.4

Q ss_pred             CCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCC
Q 023079           36 PASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGL  113 (287)
Q Consensus        36 p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~  113 (287)
                      +.....++..++.+|.+.++++|++++++++|+++..+++++. |.+.++.            +..++.| +.||+|+|.
T Consensus       213 ~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g------------~~~~i~A~~~VVlAtGg  280 (578)
T PRK12843        213 RGTRLVMGNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGG------------VRRRIRARGGVVLATGG  280 (578)
T ss_pred             CCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCC------------eEEEEEccceEEECCCC
Confidence            3444567888999999999999999999999999887666553 5544331            1346886 689999999


Q ss_pred             CchH
Q 023079          114 SAPA  117 (287)
Q Consensus       114 ~s~~  117 (287)
                      ++..
T Consensus       281 ~~~n  284 (578)
T PRK12843        281 FNRH  284 (578)
T ss_pred             cccC
Confidence            9874

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=96.89  E-value=0.13  Score=50.07  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079           45 SLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR  121 (287)
Q Consensus        45 ~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~  121 (287)
                      .+-..|.+.+.+. |++++++++|++++.+++++.++..  ++              +.+++||.||.|.|.+|. +-+.
T Consensus       126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g--------------~~~i~ad~vVgADG~~S~-vR~~  190 (547)
T PRK08132        126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDG--------------PYTLEADWVIACDGARSP-LREM  190 (547)
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCC--------------cEEEEeCEEEECCCCCcH-HHHH
Confidence            4456666667665 7999999999999988777765543  33              136999999999999986 5565


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       191 l  191 (547)
T PRK08132        191 L  191 (547)
T ss_pred             c
Confidence            5

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.86  E-value=0.0053  Score=59.24  Aligned_cols=71  Identities=18%  Similarity=0.124  Sum_probs=53.9

Q ss_pred             EcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           34 LSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        34 ~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      +.|.++......++..|.+.++++|++++++++|+++..+++++. |.  +.++             +...+.|+.||+|
T Consensus       180 ~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g-------------~~~~i~a~~VVlA  246 (506)
T PRK06481        180 HRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGK-------------ETKTISSKAVVVT  246 (506)
T ss_pred             eccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCC-------------eEEEEecCeEEEe
Confidence            445555666678899999999999999999999999987666542 43  3333             1247999999999


Q ss_pred             CCCCchH
Q 023079          111 AGLSAPA  117 (287)
Q Consensus       111 aG~~s~~  117 (287)
                      +|.|+..
T Consensus       247 tGG~~~n  253 (506)
T PRK06481        247 TGGFGAN  253 (506)
T ss_pred             CCCcccC
Confidence            9988753

>PRK08013 oxidoreductase; Provisional

Probab=96.84  E-value=0.11  Score=48.41  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=54.0

Q ss_pred             eecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           40 IVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      .+.-..+...|.+.+.+. |++++++++|++++..++.+.|+..+|.               +++||.||-|-|.+| .+
T Consensus       107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~a~lvVgADG~~S-~v  170 (400)
T PRK08013        107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGS---------------MLTARLVVGADGANS-WL  170 (400)
T ss_pred             EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCC---------------EEEeeEEEEeCCCCc-HH
Confidence            355566778888888775 8999999999999888788888887772               799999999999997 44


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      -+.+
T Consensus       171 R~~~  174 (400)
T PRK08013        171 RNKA  174 (400)
T ss_pred             HHHc
Confidence            4555

>PRK11445 putative oxidoreductase; Provisional

Probab=96.83  E-value=0.38  Score=44.01  Aligned_cols=68  Identities=15%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      .++-..+-..|.+ +...|++++.++.|+++..++++|.|++ ++|.             ..+++||.||.|.|..|. +
T Consensus        95 ~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~-------------~~~i~a~~vV~AdG~~S~-v  159 (351)
T PRK11445         95 NIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRADGW-------------EQHITARYLVGADGANSM-V  159 (351)
T ss_pred             cccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCc-------------EEEEEeCEEEECCCCCcH-H
Confidence            4676666666655 4567899999999999998888888875 4441             236999999999999875 4


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       160 r~~l  163 (351)
T PRK11445        160 RRHL  163 (351)
T ss_pred             hHHh
Confidence            4544

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.83  E-value=0.11  Score=48.07  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...|.+++.+ .|++++.+++|++++.+++++.|++++|.               +++||.||.|.|.+|.-
T Consensus       110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGA---------------EIEAKWVIGADGANSQV  169 (384)
T ss_pred             HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCCchh
Confidence            3455667666655 47999999999999988888888888773               89999999999998853

>PRK06126 hypothetical protein; Provisional

Probab=96.79  E-value=0.14  Score=49.77  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079           42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK  120 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~  120 (287)
                      +-..+...|.+.+++. |++++++++|+++..+++++.++..+..+          +++.+++||.||.|.|++|. +-+
T Consensus       124 ~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~----------g~~~~i~ad~vVgADG~~S~-VR~  192 (545)
T PRK06126        124 PQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDG----------GESLTIRADYLVGCDGARSA-VRR  192 (545)
T ss_pred             CHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCC----------CcEEEEEEEEEEecCCcchH-HHH
Confidence            3344566677777664 89999999999999887777665433111          12357999999999999985 666


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       193 ~l  194 (545)
T PRK06126        193 SL  194 (545)
T ss_pred             hc
Confidence            66

>TIGR00292 thiazole biosynthesis enzyme

Probab=96.73  E-value=0.0095  Score=52.21  Aligned_cols=70  Identities=24%  Similarity=0.263  Sum_probs=52.1

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC--eE-EEEecCCcccccCCCCCCC---CCceeEecCEEEEcCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN--CM-NVYISESKNLRNWDGVSPL---QPELTLIPKLVVNSAGL  113 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~~-~V~t~~g~~~~~~~~~~~~---~~~~~i~a~~VV~aaG~  113 (287)
                      ..|...++..|.+.|.++|+++++++.|.++..+++  ++ .|.+..       ..+...   .++..++|+.||.|+|.
T Consensus        96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~-------~~v~~~g~~~d~~~i~Ak~VVdATG~  168 (254)
T TIGR00292        96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINW-------SAIELAGLHVDPLTQRSRVVVDATGH  168 (254)
T ss_pred             EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCC-------ccccccCCCCCCEEEEcCEEEEeecC
Confidence            347789999999999999999999999999987665  33 355432       111111   13568999999999998


Q ss_pred             Cch
Q 023079          114 SAP  116 (287)
Q Consensus       114 ~s~  116 (287)
                      .+.
T Consensus       169 ~a~  171 (254)
T TIGR00292       169 DAE  171 (254)
T ss_pred             Cch
Confidence            764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.72  E-value=0.0046  Score=59.36  Aligned_cols=67  Identities=22%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEE
Q 023079           29 CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLV  107 (287)
Q Consensus        29 ~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~V  107 (287)
                      ...|++.|.+|+   ..++++|++.++++|++|+++++|..|..++++ ..|++.+|   +            .++||.|
T Consensus       212 ~~~G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g---~------------~~~ad~v  273 (487)
T COG1233         212 LSGGVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDG---E------------NIEADAV  273 (487)
T ss_pred             ccCCeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEecccc---c------------eecccee
Confidence            446788888776   789999999999999999999999999998774 66888777   2            7999999


Q ss_pred             EEcCCC
Q 023079          108 VNSAGL  113 (287)
Q Consensus       108 V~aaG~  113 (287)
                      |.++..
T Consensus       274 v~~~~~  279 (487)
T COG1233         274 VSNADP  279 (487)
T ss_pred             EecCch
Confidence            999988

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.71  E-value=0.0076  Score=56.39  Aligned_cols=68  Identities=21%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ....++..|.+.++++|++|+.+++|+++..+++++. |...   +|             ..++|.|+.||+|+|.++..
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g-------------~~~~i~A~aVIlAtGG~~~~  205 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADG-------------EFVRIKAKAVILATGGFGGE  205 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTC-------------EEEEEEESEEEE----BGGH
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCC-------------eEEEEeeeEEEeccCccccc
Confidence            5678889999999999999999999999999888763 5443   33             24679999999999999974


Q ss_pred             HHHHh
Q 023079          118 LAKRF  122 (287)
Q Consensus       118 l~~~~  122 (287)
                      +++..
T Consensus       206 ~~~~~  210 (417)
T PF00890_consen  206 LLRQY  210 (417)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            44443

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02487 zeta-carotene desaturase

Probab=96.70  E-value=0.21  Score=48.95  Aligned_cols=63  Identities=8%  Similarity=0.028  Sum_probs=46.6

Q ss_pred             cHH-HHHHHHHHHHHHCCcEEEcCceeEEEEEeC--Ce----EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           42 DSH-SLMLSLVGEAENHGTTFSNNTSVIGGHLEG--NC----MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        42 dp~-~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~~----~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+. .++..+++..+++|++|+.+++|..|..++  ++    +.|++.++..+            ..+.||.||.|+++|
T Consensus       292 g~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~------------~~~~aD~VV~A~p~~  359 (569)
T PLN02487        292 SPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEK------------EIVKADAYVAACDVP  359 (569)
T ss_pred             CchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCc------------eEEECCEEEECCCHH
Confidence            355 488889999999999999999999998863  22    24665322111            268999999999987


Q ss_pred             ch
Q 023079          115 AP  116 (287)
Q Consensus       115 s~  116 (287)
                      .-
T Consensus       360 ~~  361 (569)
T PLN02487        360 GI  361 (569)
T ss_pred             HH
Confidence            33

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.69  E-value=0.0088  Score=52.92  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=50.0

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +.+..+...+.+.+++.|+++++ ++|++++..++.|.|++.++.               ++++|+||+|+|.+.
T Consensus        54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~---------------~~~~d~liiAtG~~~  112 (300)
T TIGR01292        54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGK---------------EYTAKAVIIATGASA  112 (300)
T ss_pred             CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCC---------------EEEeCEEEECCCCCc
Confidence            45567888888888999999998 899999988778888887762               799999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.64  E-value=0.01  Score=56.45  Aligned_cols=61  Identities=20%  Similarity=0.158  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.+++.|++++++++|+++..+++++. |.+.  ++             +...++|+.||+|+|.+..
T Consensus       130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g-------------~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        130 GKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAG-------------GAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCC-------------ceEEEECCEEEECCCCCCC
Confidence            467889999999999999999999999988766653 5542  22             1247899999999998754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.63  E-value=0.006  Score=59.58  Aligned_cols=67  Identities=16%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      +++.+. +++|+..+..+|.+.+++. |++++.+ .|+++..+ ++.+ .|.+.+|.               .+.|+.||
T Consensus        85 AV~~~R-aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~---------------~I~Ad~VI  147 (617)
T TIGR00136        85 AVRATR-AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGL---------------KFRAKAVI  147 (617)
T ss_pred             cccccH-HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCC---------------EEECCEEE
Confidence            555555 6999999999999999887 7888754 67777655 4444 58888873               79999999


Q ss_pred             EcCCCCc
Q 023079          109 NSAGLSA  115 (287)
Q Consensus       109 ~aaG~~s  115 (287)
                      +|+|.|.
T Consensus       148 LATGtfL  154 (617)
T TIGR00136       148 ITTGTFL  154 (617)
T ss_pred             EccCccc
Confidence            9999993

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.55  E-value=0.012  Score=52.96  Aligned_cols=73  Identities=23%  Similarity=0.339  Sum_probs=54.1

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ..++-..+...|.+.+++.|+++..+++|+++...++++.+...++..          +++.+++||.||-|-|.+|. +
T Consensus       106 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~----------g~~~~i~adlvVgADG~~S~-v  174 (356)
T PF01494_consen  106 HVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGED----------GEEETIEADLVVGADGAHSK-V  174 (356)
T ss_dssp             EEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCT----------CEEEEEEESEEEE-SGTT-H-H
T ss_pred             hhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccC----------CceeEEEEeeeecccCcccc-h
Confidence            356667888999999999999999999999999888877654433321          12347999999999999984 4


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       175 R~~l  178 (356)
T PF01494_consen  175 RKQL  178 (356)
T ss_dssp             HHHT
T ss_pred             hhhc
Confidence            4555

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06184 hypothetical protein; Provisional

Probab=96.54  E-value=0.012  Score=56.53  Aligned_cols=66  Identities=12%  Similarity=0.125  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      ..+-..|.+.+.+.|++++.+++|++++.+++++.|+.....+            ..+++||+||.|.|++|. +.+.+
T Consensus       109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~------------~~~i~a~~vVgADG~~S~-vR~~l  174 (502)
T PRK06184        109 WRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG------------EETVRARYLVGADGGRSF-VRKAL  174 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC------------eEEEEeCEEEECCCCchH-HHHhC
Confidence            4456677788888899999999999999887777765521110            127999999999999985 55655

>PRK07588 hypothetical protein; Provisional

Probab=96.50  E-value=0.01  Score=55.01  Aligned_cols=58  Identities=12%  Similarity=0.068  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...|.+.+ ..|++++++++|++++.+++++.|++++|.               ++++|.||.|.|.+|.-
T Consensus       103 ~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        103 GDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGT---------------PRDFDLVIGADGLHSHV  160 (391)
T ss_pred             HHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCC---------------EEEeCEEEECCCCCccc
Confidence            44555555544 448999999999999988888999988873               68999999999998855

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.48  E-value=0.014  Score=55.11  Aligned_cols=60  Identities=17%  Similarity=0.098  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++.+|.+.++++|++++++++|+++..+  ++.+ .|.+.++              ..+++|+.||+|+|.++.
T Consensus       122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~--------------~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG--------------THRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC--------------cEEEEcCEEEEcCCCccc
Confidence            3568899999999999999999999999876  3444 3554333              127999999999998765

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07121 hypothetical protein; Validated

Probab=96.45  E-value=0.015  Score=55.76  Aligned_cols=63  Identities=21%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~~s~  116 (287)
                      +...++..|.+.+++.|++|+++++|+++..++ +++ .|...+.            ++...+.| +.||+|+|.++.
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~------------~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRY------------GETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeC------------CcEEEEEeCCEEEECCCCcCc
Confidence            567889999999999999999999999998763 344 3544322            11347899 999999998774

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.45  E-value=0.016  Score=46.79  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=33.5

Q ss_pred             CcEEE-cCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           58 GTTFS-NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        58 Gv~~~-~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      |+++. ...+|+++...++++.|.+.+|.               .+++|+||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDGYRVVTADGQ---------------SIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCcEEEEECCCC---------------EEEeCEEEECCCC
Confidence            54432 35699999999999999998884               7999999999995

>PRK07190 hypothetical protein; Provisional

Probab=96.43  E-value=0.014  Score=56.03  Aligned_cols=62  Identities=18%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      .+-..|.+.+++.|++++.+++|++++.+++++.|.+.+|.               +++|++||.|.|.+| .+-+.+
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~---------------~v~a~~vVgADG~~S-~vR~~l  171 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGE---------------RIQSRYVIGADGSRS-FVRNHF  171 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCc---------------EEEeCEEEECCCCCH-HHHHHc
Confidence            34455556788889999999999999988888877776662               799999999999976 344445

>PRK12839 hypothetical protein; Provisional

Probab=96.40  E-value=0.018  Score=56.42  Aligned_cols=65  Identities=18%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEE--ecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVY--ISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLS  114 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~--t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~~  114 (287)
                      .+++..++..|.+.|++.|++|+.+++|+++..+ ++++ .|.  ..++              +.++ .++.||+|+|.|
T Consensus       210 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g--------------~~~i~aak~VVLAtGGf  275 (572)
T PRK12839        210 LVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDG--------------AVTVEATRGVVLATGGF  275 (572)
T ss_pred             cccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCC--------------cEEEEeCCEEEEcCCCc
Confidence            4689999999999999999999999999999764 4544 343  3333              1234 458999999999


Q ss_pred             chHH
Q 023079          115 APAL  118 (287)
Q Consensus       115 s~~l  118 (287)
                      +...
T Consensus       276 ~~n~  279 (572)
T PRK12839        276 PNDV  279 (572)
T ss_pred             ccCH
Confidence            9743

>PRK07045 putative monooxygenase; Reviewed

Probab=96.36  E-value=0.67  Score=42.82  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=47.2

Q ss_pred             cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .-..+.+.|.+.+.. .|++++++++|++++..+++  +.|++++|.               ++++|.||-|-|.+|.-
T Consensus       104 ~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~---------------~~~~~~vIgADG~~S~v  167 (388)
T PRK07045        104 PCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE---------------RVAPTVLVGADGARSMI  167 (388)
T ss_pred             cHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC---------------EEECCEEEECCCCChHH
Confidence            334567777777654 58999999999999886554  467777772               79999999999998743

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=96.35  E-value=0.01  Score=58.03  Aligned_cols=68  Identities=16%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      +++.+. +++|...+..+|.+.+.+. |++++ +..|.++..+++++. |.+.+|.               .|.|+.||+
T Consensus        89 AV~s~R-aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~---------------~I~Ak~VIl  151 (618)
T PRK05192         89 AVRALR-AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGL---------------EFRAKAVVL  151 (618)
T ss_pred             ceeCcH-HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCC---------------EEECCEEEE
Confidence            444444 4899999999999888866 88886 567888887777764 8888873               899999999


Q ss_pred             cCCCCch
Q 023079          110 SAGLSAP  116 (287)
Q Consensus       110 aaG~~s~  116 (287)
                      |+|.|+.
T Consensus       152 ATGTFL~  158 (618)
T PRK05192        152 TTGTFLR  158 (618)
T ss_pred             eeCcchh
Confidence            9998864

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.31  E-value=0.49  Score=43.90  Aligned_cols=63  Identities=22%  Similarity=0.308  Sum_probs=52.8

Q ss_pred             eecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           40 IVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+.-..+...|.+.+.+.+ ++++++++|+.++.+++.+.|+.+ +|.               +++||.||-|=|.+|.-
T Consensus       100 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~---------------~~~a~llVgADG~~S~v  164 (387)
T COG0654         100 VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGE---------------TLDADLLVGADGANSAV  164 (387)
T ss_pred             EeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCc---------------EEecCEEEECCCCchHH
Confidence            4556677888888888776 899999999999999888887777 772               89999999999988654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.31  E-value=0.017  Score=55.02  Aligned_cols=65  Identities=15%  Similarity=-0.005  Sum_probs=49.4

Q ss_pred             cHHHHHHHHHHHHHHCCcE--EEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           42 DSHSLMLSLVGEAENHGTT--FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ....+...|...|+..|+.  ++++++|++++..+++|.|++.++.           +...+..+|.||+|+|.++..
T Consensus       109 ~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----------~~~~~~~~d~VIvAtG~~~~P  175 (461)
T PLN02172        109 SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----------GFSKDEIFDAVVVCNGHYTEP  175 (461)
T ss_pred             CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----------CceEEEEcCEEEEeccCCCCC
Confidence            3456677777788888987  8899999999988889999886541           012256899999999987543

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.26  E-value=0.025  Score=53.26  Aligned_cols=62  Identities=19%  Similarity=0.260  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..++..+|.+.++++|++++++++|+++..+++++. +.+.++.             ...++||.||+|+|.+...
T Consensus       258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~-------------~~~i~AD~VVLAtGrf~s~  320 (422)
T PRK05329        258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHG-------------DIPLRARHFVLATGSFFSG  320 (422)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCc-------------eEEEECCEEEEeCCCcccC
Confidence            456888898889999999999999999988777665 4444441             2369999999999976443

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.23  E-value=0.4  Score=44.72  Aligned_cols=73  Identities=22%  Similarity=0.215  Sum_probs=48.4

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEE---eCCeEEEEe--cC-CcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHL---EGNCMNVYI--SE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~---~~~~~~V~t--~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .++=..+-..|.+.|.+.|++++.++ +.++..   .++.+.|+.  .+ +         ...++..+++|+.||.|.|+
T Consensus        89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~---------~~~g~~~~i~a~~VIgADG~  158 (398)
T TIGR02028        89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSG---------GPSGTRCTLEVDAVIGADGA  158 (398)
T ss_pred             eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeecccc---------ccCCCccEEEeCEEEECCCc
Confidence            36666666778888999999998775 767753   234455542  22 0         00012347999999999999


Q ss_pred             CchHHHHHhC
Q 023079          114 SAPALAKRFI  123 (287)
Q Consensus       114 ~s~~l~~~~~  123 (287)
                      .| .+.+.++
T Consensus       159 ~S-~v~~~~g  167 (398)
T TIGR02028       159 NS-RVAKEID  167 (398)
T ss_pred             ch-HHHHHhC
Confidence            88 5666663

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.20  E-value=0.027  Score=52.12  Aligned_cols=63  Identities=17%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      .+...+.+.++++|++++.+++|.++..+++.+.|.+.+|.               ++.+|.||+|+|...+ .+++.+
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vI~a~G~~p~~~l~~~~  247 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGR---------------SIEVDAVIAAAGLRPNTALARRA  247 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCc---------------EEECCEEEECcCCCcchHHHHHC
Confidence            45566677788899999999999999877667778887773               7999999999999875 465555

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.18  E-value=0.66  Score=44.13  Aligned_cols=75  Identities=19%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .++=..+-..|.+.|.+.|+++++. .++++..+   ++.+.|++.+...      -+..++..+++|+.||-|.|++| 
T Consensus       128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~------~~~~g~~~~v~a~~VIgADG~~S-  199 (450)
T PLN00093        128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDS------GSGAGTPKTLEVDAVIGADGANS-  199 (450)
T ss_pred             EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccc------cccCCCccEEEeCEEEEcCCcch-
Confidence            3677777788888899999999875 57777643   2345555432100      00001123799999999999987 


Q ss_pred             HHHHHh
Q 023079          117 ALAKRF  122 (287)
Q Consensus       117 ~l~~~~  122 (287)
                      .+.+.+
T Consensus       200 ~vrr~l  205 (450)
T PLN00093        200 RVAKDI  205 (450)
T ss_pred             HHHHHh
Confidence            555666

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=96.15  E-value=0.017  Score=55.42  Aligned_cols=70  Identities=19%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      |.+.+.+|   ...++.+|++.++++|++|+++++|++|..++++. .|.+.++.++          ...+++||.||.+
T Consensus       223 G~~~~~GG---~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~----------~~~~~~ad~VI~~  289 (492)
T TIGR02733       223 GLWHLHGS---MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQ----------EDLNVKADDVVAN  289 (492)
T ss_pred             CceeecCc---HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCC----------ceEEEECCEEEEC
Confidence            34445554   36799999999999999999999999999887653 3443333110          0126899999999


Q ss_pred             CCCC
Q 023079          111 AGLS  114 (287)
Q Consensus       111 aG~~  114 (287)
                      +.++
T Consensus       290 ~~~~  293 (492)
T TIGR02733       290 LPPQ  293 (492)
T ss_pred             CCHH
Confidence            9874

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.11  E-value=0.031  Score=54.80  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCCchHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAPAL  118 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~~l  118 (287)
                      ...++..|.+.++++|++|+.+++|+++..+++++. |...++.            .+..+.++ .||+|+|.|+...
T Consensus       213 G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~------------~~~~i~a~k~VVlAtGg~~~n~  278 (574)
T PRK12842        213 GNALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAG------------GERRITARRGVVLACGGFSHDL  278 (574)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCC------------ceEEEEeCCEEEEcCCCccchH
Confidence            456788888889999999999999999988777653 5443321            12357886 7999999998543

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.09  E-value=0.03  Score=54.17  Aligned_cols=60  Identities=13%  Similarity=0.099  Sum_probs=52.2

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+..+...+.+.+++.|++++.+++|.++...++.+.|.+.+|.               +++++.||+|+|+..
T Consensus       263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~---------------~i~a~~vViAtG~~~  322 (517)
T PRK15317        263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGA---------------VLKAKTVILATGARW  322 (517)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEcCEEEECCCCCc
Confidence            467788999999999999999999999999887778888887762               799999999999854

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.05  E-value=0.038  Score=51.07  Aligned_cols=67  Identities=10%  Similarity=0.142  Sum_probs=55.0

Q ss_pred             eeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           39 GIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+.-..+...|.+.+.+.+ ++++++++|+++..+++++.|.++++                +++||.||.|-|.+|.-
T Consensus        99 ~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~----------------~~~adlvIgADG~~S~v  162 (374)
T PRK06617         99 YVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK----------------QIKCNLLIICDGANSKV  162 (374)
T ss_pred             EEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC----------------EEeeCEEEEeCCCCchh
Confidence            35667788888988888775 89999999999988888888888766                89999999999998754


Q ss_pred             HHHHh
Q 023079          118 LAKRF  122 (287)
Q Consensus       118 l~~~~  122 (287)
                       -+.+
T Consensus       163 -R~~l  166 (374)
T PRK06617        163 -RSHY  166 (374)
T ss_pred             -HHhc
Confidence             3444

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=95.94  E-value=0.37  Score=44.54  Aligned_cols=191  Identities=16%  Similarity=0.135  Sum_probs=98.2

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      +.++-.++-+.+.+.+.. +  ++.+++|+++  +.+++.+  .+|.               +++|+.||.|.|..+...
T Consensus        84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~---------------~~~A~~VI~A~G~~s~~~  141 (370)
T TIGR01789        84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGT---------------RINARSVIDCRGFKPSAH  141 (370)
T ss_pred             eEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCC---------------EEEeeEEEECCCCCCCcc
Confidence            456666777776654433 3  6668899888  3455555  4552               899999999999886533


Q ss_pred             HHHhCCCCCcccCCccccceEEEEEcCCCCCCCCc-ee--eeCCCCC-CceeEEeeecCCcEEECCCccccCCccccccc
Q 023079          119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKH-LI--YPIPEDG-GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSF  194 (287)
Q Consensus       119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~-~i--~~~~~~~-~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~  194 (287)
                      .. . +        .....|..+.+..+.  ..+. .+  +.++... ..-+|+.|-.++++++..|. +.+        
T Consensus       142 ~~-~-~--------~Q~f~G~~~r~~~p~--~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~-~s~--------  200 (370)
T TIGR01789       142 LK-G-G--------FQVFLGREMRLQEPH--GLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTY-YAD--------  200 (370)
T ss_pred             cc-c-e--------eeEEEEEEEEEcCCC--CCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEe-ccC--------
Confidence            22 1 1        111567777775441  1111 11  2222111 12245577777888874221 110        


Q ss_pred             ccccccCCChhh-HHHHHHHHhhhCCCCCCCCcccccccccceecCC--C---CCCCCe-EEecCCCCCCCCeEEEeCCC
Q 023079          195 LNRFDYSVNANR-AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP--R---QSPIDF-VIQGDDTHGVPGLVNLFGIE  267 (287)
Q Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~--~---~~~~~~-~i~~~~~~~~~~l~~~~G~~  267 (287)
                          ...++.+. .+.+.+.+.+.  .+....+.+...|+.|+....  .   ...+.. .||-.-     +.+.-+  .
T Consensus       201 ----~~~l~~~~l~~~l~~~~~~~--g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AA-----g~~~P~--t  267 (370)
T TIGR01789       201 ----DPLLDRNALSQRIDQYARAN--GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRA-----GLTHPT--T  267 (370)
T ss_pred             ----CCCCCHHHHHHHHHHHHHHh--CCCceEEEEeeeeEEeeecCCCcccccccCCceeeeeccc-----cccccc--c
Confidence                01223333 33444555443  456566777667888874320  0   011112 244432     333221  2


Q ss_pred             CchhhhhHHHHHHHHHHH
Q 023079          268 SPGLTSSMAIAEYVAAKF  285 (287)
Q Consensus       268 g~G~t~ap~~g~~va~~i  285 (287)
                      |-|+..+-..++.+++.+
T Consensus       268 Gyg~~~a~~~a~~la~~~  285 (370)
T TIGR01789       268 GYSLPVAVENADALAAQP  285 (370)
T ss_pred             cccHHHHHHHHHHHHhcc
Confidence            236777766666666543

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK09897 hypothetical protein; Provisional

Probab=95.90  E-value=0.039  Score=53.51  Aligned_cols=56  Identities=16%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             HHHHHHHHHCC--cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           48 LSLVGEAENHG--TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        48 ~~l~~~a~~~G--v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+++.+.+.|  ++++.+++|++++..+++|.|++.++.              ..+.||+||+|+|...+.
T Consensus       111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg--------------~~i~aD~VVLAtGh~~p~  168 (534)
T PRK09897        111 LRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL--------------PSETFDLAVIATGHVWPD  168 (534)
T ss_pred             HHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCC--------------eEEEcCEEEECCCCCCCC
Confidence            33455566677  788888999999988888999886541              179999999999985543

>PRK08401 L-aspartate oxidase; Provisional

Probab=95.87  E-value=0.032  Score=53.24  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ...++..|.+.+++.|++++++ .++.+..+++++. |.+. +.               .+.|+.||+|||.|+...
T Consensus       119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~-g~---------------~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        119 GKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLD-GE---------------LLKFDATVIATGGFSGLF  178 (466)
T ss_pred             hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEEC-CE---------------EEEeCeEEECCCcCcCCC
Confidence            4578899999999999999876 7888876666653 6553 41               799999999999998754

>TIGR00551 nadB L-aspartate oxidase

Probab=95.83  E-value=0.029  Score=53.85  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ....++..|.+.+++ .|+++++++.|+++..+++.+. |.+.+..            ....+.|+.||+|+|.|+..
T Consensus       126 ~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~------------~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       126 TGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRE------------TVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             CHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECC------------cEEEEEcCEEEECCCcccCC
Confidence            457888999999987 6999999999999987666543 5443320            12368999999999999863

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=95.82  E-value=0.039  Score=52.52  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=49.3

Q ss_pred             CceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           37 ASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        37 ~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      -+.++|-.++-+.|.+.|++.||+++.++ |+++...++ .+ .|++.+|.               +++||.||-|+|..
T Consensus       147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~---------------~i~ad~~IDASG~~  210 (454)
T PF04820_consen  147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGR---------------TIEADFFIDASGRR  210 (454)
T ss_dssp             -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSE---------------EEEESEEEE-SGGG
T ss_pred             eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCC---------------EEEEeEEEECCCcc
Confidence            45689999999999999999999999875 777776644 34 58888883               79999999999986


Q ss_pred             chH
Q 023079          115 APA  117 (287)
Q Consensus       115 s~~  117 (287)
                      +.-
T Consensus       211 s~L  213 (454)
T PF04820_consen  211 SLL  213 (454)
T ss_dssp             -CC
T ss_pred             chh
Confidence            553

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.82  E-value=0.046  Score=52.87  Aligned_cols=60  Identities=15%  Similarity=0.105  Sum_probs=51.3

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .....+...+.+.+++.|++++.+++|.++..+++.+.|++.+|.               .+++|+||+|+|+..
T Consensus       264 ~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       264 TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGE---------------VLKAKSVIVATGARW  323 (515)
T ss_pred             CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCc
Confidence            356778888888889999999999999999887777888887772               799999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.76  E-value=0.044  Score=51.83  Aligned_cols=58  Identities=12%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++++++++|+++..+++.+.|+++++                ++.+|.||+|+|.+.+.
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g----------------~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA----------------QLAVDALLIASGRQPAT  256 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC----------------eEEeCEEEEeecCCcCC
Confidence            45667777888999999999999999987766777777666                79999999999988764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.73  E-value=0.057  Score=50.39  Aligned_cols=66  Identities=17%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             ecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           41 VDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      +.-..+...|.+.+.+. |++++.+++|+++..+++.+.|++++|.               +++||.||.|-|.+|. +.
T Consensus       108 ~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~lvIgADG~~S~-vR  171 (405)
T PRK08850        108 VENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQ---------------ALTAKLVVGADGANSW-LR  171 (405)
T ss_pred             EEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCC---------------EEEeCEEEEeCCCCCh-hH
Confidence            33445666777777664 7999999999999888788888888773               7999999999999864 34


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       172 ~~~  174 (405)
T PRK08850        172 RQM  174 (405)
T ss_pred             HHc
Confidence            444

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.72  E-value=0.027  Score=52.76  Aligned_cols=59  Identities=10%  Similarity=0.128  Sum_probs=48.2

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ++-..|...|.+.+.  ...++.+++|++++..+++|.|++++|.               +++||.||.|.|.||.
T Consensus       102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGT---------------EYRCDLLIGADGIKSA  160 (414)
T ss_pred             CCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCC---------------EEEeeEEEECCCccHH
Confidence            566678888876653  3567789999999988888999888773               7999999999999985

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.037  Score=49.81  Aligned_cols=64  Identities=27%  Similarity=0.288  Sum_probs=54.5

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+.+....++..+.+.++..|+++.. ..|.+++..++.+.|+|+++                +++|+.||+|+|+....
T Consensus        55 ~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~----------------~~~ak~vIiAtG~~~~~  117 (305)
T COG0492          55 PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG----------------TYEAKAVIIATGAGARK  117 (305)
T ss_pred             ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC----------------eEEEeEEEECcCCcccC
Confidence            33467789999999999999999987 78888877666788999999                79999999999998776


Q ss_pred             H
Q 023079          118 L  118 (287)
Q Consensus       118 l  118 (287)
                      +
T Consensus       118 ~  118 (305)
T COG0492         118 L  118 (305)
T ss_pred             C
Confidence            5

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.71  E-value=0.049  Score=53.80  Aligned_cols=64  Identities=14%  Similarity=0.115  Sum_probs=48.3

Q ss_pred             ecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeE-EEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCM-NVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~-~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +++..+...|.+.++++| +++++++.|+++..+++++ .|.   +.++             ....+.|+.||+|+|.|+
T Consensus       129 ~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        129 INGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVREN-------------KFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             CChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCC-------------cEEEEECCEEEECCCchh
Confidence            356788888888888875 9999999999998766654 242   2333             134789999999999987


Q ss_pred             hH
Q 023079          116 PA  117 (287)
Q Consensus       116 ~~  117 (287)
                      ..
T Consensus       196 ~~  197 (608)
T PRK06854        196 GI  197 (608)
T ss_pred             hc
Confidence            53

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.71  E-value=0.046  Score=53.44  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec-CCcccccCCCCCCCCCceeEecC-EEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-ESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~-~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~  116 (287)
                      ...++..|.+.+++.|++++++++|+++..+++++. |... +|             +.+++.|+ .||+|+|.++.
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g-------------~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDG-------------REVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECC-------------eEEEEEecceEEEecCCccC
Confidence            356788888999999999999999999988776653 4432 23             23578895 69999999887

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=95.69  E-value=0.055  Score=52.93  Aligned_cols=61  Identities=18%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.+++.|+++++++.|+++..+++++. |..   .+|             +...+.|+.||+|+|.++.
T Consensus       128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTG-------------EIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCC-------------cEEEEECCeEEECCCcccC
Confidence            456788888888888999999999999987766653 432   334             1246899999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.68  E-value=0.026  Score=51.91  Aligned_cols=56  Identities=23%  Similarity=0.180  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...+...+...|.+++.+++|++|+.+++++.|.+.+|.               +++||+||+|+......
T Consensus       212 ~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~---------------~~~ad~VI~a~p~~~l~  267 (450)
T PF01593_consen  212 SLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGE---------------TIEADAVISAVPPSVLK  267 (450)
T ss_dssp             HHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSS---------------EEEESEEEE-S-HHHHH
T ss_pred             hHHHHHHHhhcCceeecCCcceeccccccccccccccce---------------EEecceeeecCchhhhh
Confidence            344444555668899999999999999999999999883               79999999999865433

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK14727 putative mercuric reductase; Provisional

Probab=95.62  E-value=0.058  Score=51.69  Aligned_cols=57  Identities=21%  Similarity=0.117  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.+++.|++++++++|+++..+++.+.|.+.++                ++.+|.||+|+|.+.+.
T Consensus       229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g----------------~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        229 LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG----------------ELRAEKLLISTGRHANT  285 (479)
T ss_pred             HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC----------------eEEeCEEEEccCCCCCc
Confidence            4566777788899999999999999987777777777766                79999999999998764

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.58  E-value=0.061  Score=52.79  Aligned_cols=62  Identities=23%  Similarity=0.217  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++..|.+.+++.|+++++++.|+++..+++.+. |.   +.++             +...+.|+.||+|+|.++..
T Consensus       134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADG-------------RLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCEEEECCCCCcCC
Confidence            367888999989999999999999999987766542 32   3344             12368999999999998753

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=95.57  E-value=0.056  Score=53.90  Aligned_cols=62  Identities=13%  Similarity=0.137  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EE--Ee-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NV--YI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V--~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++..|.+.+.+.|+++++++.|+++..+++++ .|  .. .+|             ....|.|+.||+|||.++.-
T Consensus       157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G-------------~~~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITG-------------ELRAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCcccCC
Confidence            34567788888999999999999999998776654 23  32 344             23468899999999988753

>TIGR01810 betA choline dehydrogenase

Probab=95.54  E-value=0.044  Score=53.17  Aligned_cols=64  Identities=23%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             HHHHHHHH-HCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-CchHHHHHh
Q 023079           48 LSLVGEAE-NHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKRF  122 (287)
Q Consensus        48 ~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-~s~~l~~~~  122 (287)
                      .+++..|. +.|++|++++.|+.|..+++++ .|+..++.           +....+.++.||+|||+ ++++|+...
T Consensus       197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~-----------~~~~~~~ak~VIlaAGai~SP~LLl~S  263 (532)
T TIGR01810       197 RAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGG-----------RKEHTEANKEVILSAGAINSPQLLQLS  263 (532)
T ss_pred             HHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCC-----------cEEEEEEeeeEEEccCCCCCHHHHHhc
Confidence            44555555 5579999999999999887654 36553331           01124689999999999 899988766

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.54  E-value=0.057  Score=52.85  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEec-CCcccccCCCCCCCCCceeEec-CEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYIS-ESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~-~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~~s~~  117 (287)
                      ...++.+|.+.+++.|++|+++++|+++..+++++ .|... ++             .++.+.| +.||+|+|.++..
T Consensus       216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g-------------~~~~i~a~kaVILAtGGf~~n  280 (564)
T PRK12845        216 GQALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRG-------------REVTVTARRGVVLAAGGFDHD  280 (564)
T ss_pred             hHHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECC-------------cEEEEEcCCEEEEecCCcccc
Confidence            35677889888999999999999999998765554 34332 33             1345777 5799999998864

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=95.53  E-value=0.073  Score=50.50  Aligned_cols=67  Identities=19%  Similarity=0.113  Sum_probs=53.2

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-e-EEEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-C-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      +++.|..|   ...+.++|.+.++..|++++.+++|.+|..+++ . +.|++.+|+               +++|+.||.
T Consensus       223 p~~yp~gG---~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge---------------~i~a~~VV~  284 (443)
T PTZ00363        223 PFIYPLYG---LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGE---------------VAKCKLVIC  284 (443)
T ss_pred             cceeeCCC---HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCc---------------EEECCEEEE
Confidence            34555555   357999999999999999999999999987753 3 568888883               799999998


Q ss_pred             cCCCCch
Q 023079          110 SAGLSAP  116 (287)
Q Consensus       110 aaG~~s~  116 (287)
                      ....|..
T Consensus       285 ~~s~~p~  291 (443)
T PTZ00363        285 DPSYFPD  291 (443)
T ss_pred             Ccccccc
Confidence            7776644

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=95.53  E-value=0.064  Score=52.53  Aligned_cols=62  Identities=18%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++.+|.+.+++.|++|++++.++++..+++.+ .|..   .+|             ....|.|+.||+|||.++..
T Consensus       118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g-------------~~~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETG-------------EIHRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCC-------------cEEEEEeCeEEECCCCcccc
Confidence            45788999999999999999999999998766654 3432   234             23578999999999998753

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.51  E-value=0.064  Score=50.72  Aligned_cols=61  Identities=11%  Similarity=0.174  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEE-ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVY-ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~-t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.+++ .|++|+++++|+++..+++++ .|. +.++.             .+.+.|+.||+|+|.++.
T Consensus       127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~-------------~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        127 GKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNK-------------QINIYSKVTILATGGIGG  190 (433)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCc-------------EEEEEcCeEEEccCcccc
Confidence            45788888888875 599999999999997766653 333 33331             236899999999999764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.51  E-value=0.064  Score=52.52  Aligned_cols=63  Identities=14%  Similarity=0.101  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ...++..|.+.+.+.|+++++++.++++..+++.+. |...+..+          +....+.|+.||+|||.+.
T Consensus       135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~----------g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKT----------LTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCC----------CeEEEEEeCeEEECCCccc
Confidence            456788898888888999999999999988766653 54432111          1235789999999999887

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.43  E-value=0.047  Score=52.75  Aligned_cols=63  Identities=19%  Similarity=0.119  Sum_probs=47.0

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+..++.+|.+.++ .|+++++++.|+++..+++.+. |.+.+..           ++...+.|+.||+|+|.++.
T Consensus       128 ~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~-----------g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        128 TGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSE-----------GKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             cHHHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECC-----------CcEEEEEcCeEEEecCCCcc
Confidence            45678888888776 6999999999999977666543 5443320           12346899999999999885

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.43  E-value=0.077  Score=50.11  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      ..+...+.+.++++|++++.+++|+++..+++...|.++++                ++.+|.||+|+|...+ .+++..
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~d~vi~a~G~~p~~~~l~~~  254 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG----------------EYEADVVIVATGVKPNTEFLEDT  254 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC----------------EEEcCEEEECcCCCcCHHHHHhc
Confidence            45667777788899999999999999965444345666655                7999999999998754 455554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.42  E-value=0.071  Score=52.08  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+.+..++..+.+.+++.|++++ +++|+++..+++.+.|++.++                .+.+++||+|+|++...
T Consensus        56 ~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g----------------~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        56 NTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG----------------DYKTLAVLIATGASPRK  116 (555)
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC----------------EEEEeEEEECCCCccCC
Confidence            34567888888888889999986 678999987766677888777                79999999999997543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=95.41  E-value=0.071  Score=51.84  Aligned_cols=64  Identities=13%  Similarity=0.125  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecC--CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079           45 SLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISE--SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR  121 (287)
Q Consensus        45 ~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~--g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~  121 (287)
                      .+-..|.+.+.+. |++++.+++|++++.+++++.|++.+  |             ++.+++||.||-|.|.+|. +-+.
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G-------------~~~~i~ad~vVgADG~~S~-vR~~  179 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADG-------------QRETVRARYVVGCDGANSF-VRRT  179 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCC-------------CEEEEEEEEEEecCCCchh-HHHH
Confidence            3445666666664 99999999999999888888877653  3             1347999999999999875 4444


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       180 l  180 (538)
T PRK06183        180 L  180 (538)
T ss_pred             c
Confidence            4

>PRK07512 L-aspartate oxidase; Provisional

Probab=95.41  E-value=0.048  Score=52.75  Aligned_cols=63  Identities=13%  Similarity=0.137  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+..++.+|.+.+++. |+++++++.|+++..+++.+ .|.+.+..            ....+.|+.||+|+|.++.
T Consensus       134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~------------~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAG------------GPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCC------------eEEEEECCEEEEcCCCCcC
Confidence            3567889999888875 89999999999987766654 34443220            1236899999999999763

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.40  E-value=0.077  Score=52.75  Aligned_cols=59  Identities=8%  Similarity=-0.039  Sum_probs=43.0

Q ss_pred             HHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           48 LSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        48 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..|.+.+++.|++|++++.|+++..+++++. |...+..+          +....|.|+.||+|||.++.
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~----------g~~~~i~AkaVVLATGG~g~  233 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVT----------GEIERHTADAVVLATGGYGN  233 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCC----------CcEEEEECCEEEECCCCccc
Confidence            5566678888999999999999987666543 54432100          11346899999999999875

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.36  E-value=0.064  Score=52.75  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCE-EEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~~s~  116 (287)
                      .++..|.+.+++.|++|+++++|+.+..+ ++++. |.....            +.++.|.|++ ||+|||.+..
T Consensus       214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~------------~~~~~i~a~~aVilAtGGf~~  276 (584)
T PRK12835        214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVERE------------GRTLRIGARRGVILATGGFDH  276 (584)
T ss_pred             HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeC------------CcEEEEEeceeEEEecCcccC
Confidence            35556777788899999999999999875 45553 443322            1245799985 9999999985

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.26  E-value=0.078  Score=51.83  Aligned_cols=60  Identities=15%  Similarity=0.067  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec-CCcccccCCCCCCCCCceeEecC-EEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-ESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~-~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~  116 (287)
                      ..+...|.+.+++.|++++++++|+++..+++++. |... ++             ++..|.|+ .||+|+|.+..
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g-------------~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESG-------------EPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCC-------------cEEEEEeceeEEEccCCcCc
Confidence            34667777788889999999999999988766653 4433 33             23578997 59999998876

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.25  E-value=0.083  Score=49.21  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKR  121 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~  121 (287)
                      +..+...+.+.++++|++++++++|+++.. ++.+.|++.+|.               ++.||.||+|+|...+. +++.
T Consensus       185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~---------------~i~aD~Vv~a~G~~pn~~l~~~  248 (396)
T PRK09754        185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGE---------------TLQADVVIYGIGISANDQLARE  248 (396)
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCC---------------EEECCEEEECCCCChhhHHHHh
Confidence            344556677778889999999999999876 556677787772               79999999999998754 4443


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       249 ~  249 (396)
T PRK09754        249 A  249 (396)
T ss_pred             c
Confidence            3

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=95.25  E-value=0.1  Score=48.53  Aligned_cols=58  Identities=19%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             eecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           40 IVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ++|-..+-..+.+.++++ +++++ ..+|+++..+++.+ .|.|.+|.               .+.|+.||+|+|.
T Consensus        91 qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~---------------~~~a~~vVlaTGt  150 (392)
T PF01134_consen   91 QVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGE---------------EIEADAVVLATGT  150 (392)
T ss_dssp             EE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSE---------------EEEECEEEE-TTT
T ss_pred             hccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCC---------------EEecCEEEEeccc
Confidence            799999999999988874 78887 47999999988876 49999883               8999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.25  E-value=0.091  Score=49.92  Aligned_cols=59  Identities=14%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++++.+++|+++...++++.|++.+|.               ++++|.||+|+|...+.
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK---------------KIKADCLLYANGRTGNT  274 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC---------------EEEeCEEEEeecCCccc
Confidence            345677788888999999999999999877677777776662               79999999999987653

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.21  E-value=0.049  Score=50.56  Aligned_cols=55  Identities=15%  Similarity=0.029  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +..+|++.++++|++|+++++|++|...++++.+.. .+|   +            .++||.||+|+.++.
T Consensus       199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g---~------------~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGG---E------------TLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCC---c------------cccCCEEEEcCCHHH
Confidence            335577788888999999999999999887765432 344   1            789999999987653

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK14694 putative mercuric reductase; Provisional

Probab=95.18  E-value=0.096  Score=49.99  Aligned_cols=58  Identities=10%  Similarity=0.094  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++++.++.|++++.+++.+.+.+.++                ++.+|.||+|+|...+.
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG----------------TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC----------------EEEeCEEEEccCCCCCc
Confidence            35667778888899999999999999987766666777655                79999999999987665

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=95.15  E-value=0.086  Score=52.18  Aligned_cols=61  Identities=13%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.++++|+++++++.++++.. +++.+. |..   .+|             ....|.|+.||+|||.++.
T Consensus       165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDG-------------SIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCC-------------eEEEEECCcEEEeCCCCcc
Confidence            457889999999999999999999999887 455542 432   334             2357899999999999864

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.14  E-value=0.093  Score=51.60  Aligned_cols=62  Identities=23%  Similarity=0.224  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC----CeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG----NCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~----~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ...++..|.+.+++.|+++++++.|+++..++    +++ .|..   .++             ....|.|+.||+|+|.+
T Consensus       139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~  205 (583)
T PRK08205        139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATG-------------EIHVFHAKAVVFATGGS  205 (583)
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCC-------------eEEEEEeCeEEECCCCC
Confidence            56788899998999999999999999997654    444 3433   233             12468999999999998


Q ss_pred             chH
Q 023079          115 APA  117 (287)
Q Consensus       115 s~~  117 (287)
                      +..
T Consensus       206 ~~~  208 (583)
T PRK08205        206 GRV  208 (583)
T ss_pred             ccc
Confidence            743

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=95.12  E-value=0.059  Score=45.82  Aligned_cols=71  Identities=28%  Similarity=0.352  Sum_probs=49.7

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeEE-EEecCCcccccCCCCCCC---CCceeEecCEEEEcCCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPL---QPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~---~~~~~i~a~~VV~aaG~~  114 (287)
                      ..|+..++..|+..|.+.|+++++.+.|.++-..+ +++. |.+       ||.-+++.   =.+..|+|+.||-|||.-
T Consensus        92 v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvVi-------NWt~V~~~glHvDPl~i~ak~ViDaTGHd  164 (230)
T PF01946_consen   92 VADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVI-------NWTPVEMAGLHVDPLTIRAKVVIDATGHD  164 (230)
T ss_dssp             ES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEE-------EEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred             EEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEE-------EehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence            46999999999999999999999999999987655 6653 443       13333333   245789999999999987


Q ss_pred             chH
Q 023079          115 APA  117 (287)
Q Consensus       115 s~~  117 (287)
                      +.-
T Consensus       165 a~v  167 (230)
T PF01946_consen  165 AEV  167 (230)
T ss_dssp             SSS
T ss_pred             hHH
Confidence            754

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.02  E-value=0.093  Score=50.23  Aligned_cols=62  Identities=13%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC--Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG--NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+..+++|++|+.+++|++|..++  ++   + .|++.+|.+++            .+.||+||+|+.+|...
T Consensus       219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~------------~~~aD~VVlA~p~~~~~  286 (474)
T TIGR02732       219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK------------VIKADAYVAACDVPGIK  286 (474)
T ss_pred             hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce------------EEECCEEEECCChHHHH
Confidence            3456778888889999999999999998754  22   2 34454442112            58999999999987443

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=95.01  E-value=0.15  Score=43.43  Aligned_cols=73  Identities=26%  Similarity=0.345  Sum_probs=55.8

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEE-EEecCCcccccCCCCCCCC---CceeEecCEEEEcCCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQ---PELTLIPKLVVNSAGLS  114 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~---~~~~i~a~~VV~aaG~~  114 (287)
                      ..|+..++..|+..|.+.|+++++.+.|.++-..++ ++. |.+       ||--+.+++   .+..++|+.||-|||.-
T Consensus       105 v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVv-------NWt~V~~~~lhvDPl~i~a~~VvDaTGHd  177 (262)
T COG1635         105 VADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVV-------NWTPVQMAGLHVDPLTIRAKAVVDATGHD  177 (262)
T ss_pred             EecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEE-------ecchhhhcccccCcceeeEEEEEeCCCCc
Confidence            568999999999999999999999999999876655 442 333       233333333   35689999999999998


Q ss_pred             chHHH
Q 023079          115 APALA  119 (287)
Q Consensus       115 s~~l~  119 (287)
                      +.-..
T Consensus       178 a~v~~  182 (262)
T COG1635         178 AEVVS  182 (262)
T ss_pred             hHHHH
Confidence            77653

>PRK06116 glutathione reductase; Validated

Probab=94.96  E-value=0.11  Score=49.22  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++++.+++|.+++.++++ +.|++.+|.               ++.+|.||+|+|....
T Consensus       209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~---------------~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGE---------------TLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCc---------------EEEeCEEEEeeCCCcC
Confidence            45667777888999999999999999876544 677777762               7999999999997543

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.94  E-value=0.11  Score=50.88  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.+.+.|+++++++.++++..+ ++++ .|..   .+|             +...|.|+.||+|||.++.
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETG-------------ETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCC-------------cEEEEecCeEEECCCCccc
Confidence            4678899999899899999999999999875 4554 3443   334             2457899999999999885

>PLN02676 polyamine oxidase

Probab=94.94  E-value=0.071  Score=51.25  Aligned_cols=57  Identities=19%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHC------CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENH------GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~------Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++..|++....+      +.+|+.+++|++|..+++++.|+|.+|.               +++||+||+|.....
T Consensus       224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~---------------~~~a~~VIvtvPl~v  286 (487)
T PLN02676        224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGS---------------VYRAKYVIVSVSLGV  286 (487)
T ss_pred             HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCC---------------EEEeCEEEEccChHH
Confidence            45566666554332      3679999999999998889999999883               799999999998643

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.93  E-value=0.14  Score=47.74  Aligned_cols=65  Identities=14%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             ecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           41 VDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ++-..+...|.+.+.+. |++++++++|+++..+++++.|+..++.++            .+++||.||-|-|.+|.-
T Consensus       104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~------------~~~~adlvIgADG~~S~v  169 (400)
T PRK06475        104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSV------------ETVSAAYLIACDGVWSML  169 (400)
T ss_pred             ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCC------------cEEecCEEEECCCccHhH
Confidence            45567888888887664 899999999999988777887765322111            279999999999999854

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=94.92  E-value=0.079  Score=50.35  Aligned_cols=53  Identities=11%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ..++.+|++.+.+  ++|+++++|++|+..+++|.|++.+|.               .++||.||+|+-+
T Consensus       226 ~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~a~p~  278 (463)
T PRK12416        226 STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHE---------------SIQADYVVLAAPH  278 (463)
T ss_pred             HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEECCCH
Confidence            4566777665543  689999999999998888999887772               6899999999853

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.92  E-value=0.11  Score=51.12  Aligned_cols=62  Identities=15%  Similarity=0.180  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++..|.+.+++.|++|++++.|+++..++ +++ .|..   .+|             ..+.|.|+.||+|||.+...
T Consensus       148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDG-------------TLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCC-------------cEEEEEcCEEEECCCCCccc
Confidence            34688889998999999999999999998765 444 3432   344             23578999999999998764

>PRK07804 L-aspartate oxidase; Provisional

Probab=94.91  E-value=0.11  Score=50.72  Aligned_cols=65  Identities=11%  Similarity=0.067  Sum_probs=46.9

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ....++.+|.+.+++.|+++++++.|+++..++ +.+ .|...   .+..          +....+.|+.||+|+|.++.
T Consensus       142 ~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~----------~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        142 TGAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSP----------DGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCC----------CcEEEEEcCeEEECCCCCCC
Confidence            346788899999989999999999999998764 343 24332   1100          00237899999999999874

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.91  E-value=0.089  Score=37.13  Aligned_cols=42  Identities=17%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISES   84 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g   84 (287)
                      +..+...+.+.+++.|+++++++.+.++...+++++|++++|
T Consensus        39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            345666677888999999999999999999887777888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK05868 hypothetical protein; Validated

Probab=94.91  E-value=0.12  Score=47.85  Aligned_cols=57  Identities=18%  Similarity=0.206  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .|...|. .+...|++++++++|++++.+++++.|+.++|.               +++||.||-|-|.+|.-
T Consensus       106 ~L~~~l~-~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~---------------~~~adlvIgADG~~S~v  162 (372)
T PRK05868        106 DLVELLY-GATQPSVEYLFDDSISTLQDDGDSVRVTFERAA---------------AREFDLVIGADGLHSNV  162 (372)
T ss_pred             HHHHHHH-HhccCCcEEEeCCEEEEEEecCCeEEEEECCCC---------------eEEeCEEEECCCCCchH
Confidence            3444333 344568999999999999887788889888873               79999999999999844

>TIGR02731 phytoene_desat phytoene desaturase

Probab=94.88  E-value=0.088  Score=49.86  Aligned_cols=62  Identities=11%  Similarity=0.165  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +..++.+|.+.++++|++|+++++|++|...+++ + .|++.++.+          +..+++.||.||.|+.+.
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~----------~~~~~~~a~~VI~a~p~~  275 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEG----------QRRFEVTADAYVSAMPVD  275 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCC----------CceeEEECCEEEEcCCHH
Confidence            5778999999999999999999999999865443 4 466655411          011258999999999874

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=94.88  E-value=0.051  Score=50.80  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEE
Q 023079           29 CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLV  107 (287)
Q Consensus        29 ~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~V  107 (287)
                      ..+++..|.+|.   ..+..++++.++++|++|++...|.+|..++++. .|+..+|+               +++++.|
T Consensus       252 ~~g~~~Yp~GG~---Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~---------------ev~sk~V  313 (561)
T KOG4254|consen  252 HKGGWGYPRGGM---GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGT---------------EVRSKIV  313 (561)
T ss_pred             cCCcccCCCCCh---hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCc---------------EEEeeee
Confidence            346666777765   5778899999999999999999999999887764 59999995               7999888


Q ss_pred             EEcCCCCchH
Q 023079          108 VNSAGLSAPA  117 (287)
Q Consensus       108 V~aaG~~s~~  117 (287)
                      |=-|+.|-.-
T Consensus       314 vSNAt~~~Tf  323 (561)
T KOG4254|consen  314 VSNATPWDTF  323 (561)
T ss_pred             ecCCchHHHH
Confidence            8888888654

>PRK08275 putative oxidoreductase; Provisional

Probab=94.86  E-value=0.14  Score=50.08  Aligned_cols=60  Identities=12%  Similarity=0.071  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..++..|.+.+++.|+++++++.|+++..+ ++.+ .|..   .+|             +...+.|+.||+|+|..+.
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTG-------------EFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCC-------------cEEEEECCEEEECCCCccc
Confidence            467888988899999999999999999876 4544 3432   344             1346899999999999764

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=94.80  E-value=0.11  Score=50.57  Aligned_cols=93  Identities=19%  Similarity=0.228  Sum_probs=61.1

Q ss_pred             eeeCHHHHHhhC-------CCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--C--CeE-EEE
Q 023079           13 RMLEGFEAMKME-------PELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--G--NCM-NVY   80 (287)
Q Consensus        13 ~~L~~~ei~~~~-------P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~--~~~-~V~   80 (287)
                      .+.|+.|+++.+       +.+....++-...--  ....++.-|.+.++++||+|+++++|+++..+  +  +.+ .|.
T Consensus       190 ~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~yn--qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~  267 (576)
T PRK13977        190 KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYN--QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIH  267 (576)
T ss_pred             hhhHHHHHHHHHHHHHHhhccCCccccccCCCCC--chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEE
Confidence            456777776654       444344444322221  23688899999999999999999999999875  3  223 244


Q ss_pred             ec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           81 IS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        81 t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .. +|..          .......+|.||+|+|..+..
T Consensus       268 ~~~~~~~----------~~I~l~~~DlVivTnGs~t~n  295 (576)
T PRK13977        268 LTRNGKE----------ETIDLTEDDLVFVTNGSITES  295 (576)
T ss_pred             EEeCCce----------eEEEecCCCEEEEeCCcCccc
Confidence            43 2311          112346899999999988766

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=94.76  E-value=0.14  Score=47.45  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK  120 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~  120 (287)
                      -..+...|++.+.+.|++++++++|++++. +++...|+. .+|.             +.+++||.||-|-|.+|. +-+
T Consensus       102 ~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~-------------~~~i~ad~vVgADG~~S~-vR~  167 (392)
T PRK08243        102 QTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGE-------------EHRLDCDFIAGCDGFHGV-SRA  167 (392)
T ss_pred             cHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCe-------------EEEEEeCEEEECCCCCCc-hhh
Confidence            356677888888888999999999999976 455566665 3451             247999999999999874 444


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       168 ~~  169 (392)
T PRK08243        168 SI  169 (392)
T ss_pred             hc
Confidence            44

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=94.69  E-value=0.17  Score=47.78  Aligned_cols=67  Identities=18%  Similarity=0.312  Sum_probs=52.3

Q ss_pred             eecHHHHHHHHHHHHHHCC---cEEEcCceeEEEEEe-------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           40 IVDSHSLMLSLVGEAENHG---TTFSNNTSVIGGHLE-------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~G---v~~~~~~~V~~i~~~-------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      .++-..+...|.+.+.+.+   ++++++++|++++.+       ++.+.|++.+|.               +++||.||-
T Consensus       113 ~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~---------------~i~a~llVg  177 (437)
T TIGR01989       113 IIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQ---------------VLYTKLLIG  177 (437)
T ss_pred             EEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCC---------------EEEeeEEEE
Confidence            4566677788888888765   899999999999752       356788888773               899999999


Q ss_pred             cCCCCchHHHHHh
Q 023079          110 SAGLSAPALAKRF  122 (287)
Q Consensus       110 aaG~~s~~l~~~~  122 (287)
                      |-|.+|.- -+.+
T Consensus       178 ADG~~S~v-R~~~  189 (437)
T TIGR01989       178 ADGSNSNV-RKAA  189 (437)
T ss_pred             ecCCCChh-HHHc
Confidence            99998753 3444

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=94.64  E-value=0.15  Score=49.35  Aligned_cols=60  Identities=12%  Similarity=0.093  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEec-CCcccccCCCCCCCCCceeEecC-EEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYIS-ESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~-~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~  116 (287)
                      ..++..|.+.+.+. |++++++++|+++..+++.+. |... ++             .+..+.|+ .||+|||.+..
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g-------------~~~~i~A~k~VIlAtGG~~~  236 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGG-------------ERRRVRARRGVLLAAGGFEQ  236 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECC-------------cEEEEEeCceEEEeCCCccC
Confidence            45777788777664 999999999999987766553 4332 23             23579996 69999999853

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=94.61  E-value=0.15  Score=50.59  Aligned_cols=62  Identities=16%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++.+|.+.+.+.|++|+.++.++++..+ ++.+ .|..   .+|             +...+.|+.||+|||.+...
T Consensus       186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDG-------------TLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCC-------------eEEEEEcCeEEECCCCCccc
Confidence            4568889998898899999999999998765 4544 3443   234             23578999999999998754

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=94.57  E-value=0.082  Score=48.48  Aligned_cols=61  Identities=16%  Similarity=0.241  Sum_probs=47.0

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .|.+++..+...+.+.+++.|++|+. .+|++++.+++  .|.+++|.               +++.|++|+|+|+-..
T Consensus        48 ~g~~~~~~~~~~~~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~---------------~~~yD~LviAtG~~~~  108 (364)
T TIGR03169        48 AGHYSLDEIRIDLRRLARQAGARFVI-AEATGIDPDRR--KVLLANRP---------------PLSYDVLSLDVGSTTP  108 (364)
T ss_pred             heeCCHHHhcccHHHHHHhcCCEEEE-EEEEEEecccC--EEEECCCC---------------cccccEEEEccCCCCC
Confidence            45667777777777777888999986 48999987665  46677772               6999999999997543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=94.55  E-value=0.14  Score=48.45  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++.++.|+++...++++.|++.++.               ++.+|.||+|+|...+
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~viva~G~~pn  264 (446)
T TIGR01424       207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGE---------------EIVADVVLFATGRSPN  264 (446)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCc---------------EeecCEEEEeeCCCcC
Confidence            345566777788899999999999999876666777776662               7999999999997544

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.52  E-value=0.15  Score=48.44  Aligned_cols=60  Identities=12%  Similarity=0.098  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++++.+++|++++.+++.+.|++.++.            .+.++.+|.||+|+|....
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg------------~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGG------------KEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCC------------eeEEEEeCEEEEeeCCccC
Confidence            55666777788899999999999999877677777665441            1237999999999998654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.51  E-value=0.17  Score=48.03  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++++.+++|.+++.+++++.|++.+|.             ..++.+|.||+|+|...+
T Consensus       212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~-------------~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGE-------------TETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCc-------------EEEEEeCEEEEecCCccc
Confidence            45566777788899999999999999887777777766551             127999999999997654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06753 hypothetical protein; Provisional

Probab=94.50  E-value=0.14  Score=47.00  Aligned_cols=61  Identities=8%  Similarity=0.132  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      ..+...|.+.+.  +.+++++++|++++.+++++.|++++|.               ++++|.||-|-|.+|. +.+.+
T Consensus        98 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~~~vigadG~~S~-vR~~~  158 (373)
T PRK06753         98 QTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGE---------------SEAFDLCIGADGIHSK-VRQSV  158 (373)
T ss_pred             HHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCC---------------EEecCEEEECCCcchH-HHHHh
Confidence            444555544433  4689999999999988888999888773               7899999999999874 33444

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.46  E-value=0.16  Score=49.46  Aligned_cols=61  Identities=11%  Similarity=0.155  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.+++.|+++++++.|+++..++++ + .|..   .+|             ..+.|.|+.||+|||.++.
T Consensus       133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNG-------------EIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCC-------------cEEEEEcCcEEECCCCCCC
Confidence            3567888888888899999999999999876553 4 3432   334             1347999999999999864

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.43  E-value=0.18  Score=49.70  Aligned_cols=62  Identities=11%  Similarity=0.079  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++..|.+.+.+.|+++++++.++++..+ ++++ .|..   .+|             ....+.|+.||+|||.++..
T Consensus       142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETG-------------EVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCCcccc
Confidence            4578889988888899999999999999874 4554 3443   233             23578999999999998753

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=94.34  E-value=0.13  Score=48.51  Aligned_cols=53  Identities=17%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .++.+|++.+...  +|+++++|++|..++++|.|++.+|.               +++||+||+|+.+.
T Consensus       222 ~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~vI~a~p~~  274 (451)
T PRK11883        222 SLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYEIVLSNGG---------------EIEADAVIVAVPHP  274 (451)
T ss_pred             HHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECCCHH
Confidence            4555555444332  89999999999988888988887773               79999999998863

>PRK13748 putative mercuric reductase; Provisional

Probab=94.33  E-value=0.2  Score=48.87  Aligned_cols=57  Identities=7%  Similarity=0.023  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.+++.|++++++++|++++.+++.+.+.++++                ++.+|.||+|+|...+.
T Consensus       311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG----------------ELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC----------------eEEeCEEEEccCCCcCC
Confidence            4566777788899999999999999987766777777666                79999999999987554

>PLN02268 probable polyamine oxidase

Probab=94.31  E-value=0.12  Score=48.55  Aligned_cols=44  Identities=16%  Similarity=0.156  Sum_probs=37.8

Q ss_pred             CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           57 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        57 ~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+++++.+++|++|...+++|.|++.+|+               +++||+||+|+-+..
T Consensus       209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~VIva~P~~~  252 (435)
T PLN02268        209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGT---------------TFVADAAIIAVPLGV  252 (435)
T ss_pred             ccCceeCCCeeEEEEEcCCcEEEEECCCc---------------EEEcCEEEEecCHHH
Confidence            46789999999999998888999988773               699999999986654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.29  E-value=0.18  Score=48.98  Aligned_cols=66  Identities=20%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             eecHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeC-----CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           40 IVDSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEG-----NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~-----~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      ...-..+..-|...|+..+.  .|+++|+|+++++.+     ++|.|++.++.            ++.+-.+|.||+|+|
T Consensus        80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g------------~~~~~~fD~VvvatG  147 (531)
T PF00743_consen   80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG------------KEETEEFDAVVVATG  147 (531)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT------------EEEEEEECEEEEEE-
T ss_pred             CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC------------eEEEEEeCeEEEcCC
Confidence            44556777777778888776  589999999998864     36999886541            123557899999999


Q ss_pred             CCchH
Q 023079          113 LSAPA  117 (287)
Q Consensus       113 ~~s~~  117 (287)
                      .++..
T Consensus       148 ~~~~P  152 (531)
T PF00743_consen  148 HFSKP  152 (531)
T ss_dssp             SSSCE
T ss_pred             CcCCC
Confidence            98754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.27  E-value=0.11  Score=46.23  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=48.2

Q ss_pred             EcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEe--CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           34 LSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLE--GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        34 ~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~--~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      .++.+..-++.   .+++..|.++ ++++++++.|+.|..+  ++++ .|+..+..+.         .+...+.++.||+
T Consensus       185 ~~~~g~r~s~~---~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~---------~~~~~~~ak~VIl  252 (296)
T PF00732_consen  185 NCPNGARSSAA---TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG---------VQRRIVAAKEVIL  252 (296)
T ss_dssp             CECTTCBBHHH---HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS---------EEEEEEEEEEEEE
T ss_pred             cccchhceehh---hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCc---------ceeeeccceeEEe
Confidence            35555554442   3444455555 9999999999999665  4443 3544332110         1234688999999


Q ss_pred             cCCC-CchHHHHHh
Q 023079          110 SAGL-SAPALAKRF  122 (287)
Q Consensus       110 aaG~-~s~~l~~~~  122 (287)
                      |||+ .+++|+...
T Consensus       253 aAGai~Tp~LLl~S  266 (296)
T PF00732_consen  253 AAGAIGTPRLLLRS  266 (296)
T ss_dssp             -SHHHHHHHHHHHT
T ss_pred             ccCCCCChhhhccc
Confidence            9997 666777666

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=0.074  Score=45.38  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ..|+..|.+++.+.|.++++. .|.+++.++.-+.|.|+.+                .++||.||+|+|+-+.+|
T Consensus        70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~----------------~v~~~avI~atGAsAkRl  127 (322)
T KOG0404|consen   70 PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR----------------PVTADAVILATGASAKRL  127 (322)
T ss_pred             HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEecCC----------------ceeeeeEEEecccceeee
Confidence            478888999999999999864 6778888888889989877                899999999999988776

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.17  E-value=0.13  Score=47.91  Aligned_cols=63  Identities=22%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR  121 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~  121 (287)
                      .|.++.....+.++++||++.+++.|++++.++    |++.+|.              .+|.++.||=|||.-++.+.+.
T Consensus       207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~--------------~~I~~~tvvWaaGv~a~~~~~~  268 (405)
T COG1252         207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGE--------------EEIPADTVVWAAGVRASPLLKD  268 (405)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCC--------------eeEecCEEEEcCCCcCChhhhh
Confidence            456777777778899999999999999997643    6666662              1599999999999999999987


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       269 l  269 (405)
T COG1252         269 L  269 (405)
T ss_pred             c
Confidence            4

>PRK10262 thioredoxin reductase; Provisional

Probab=94.17  E-value=0.27  Score=44.26  Aligned_cols=59  Identities=14%  Similarity=0.080  Sum_probs=45.9

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ++...+...+.+.+...+.++..+ +|.+++..++.|.++++.+                .+++|+||+|+|.+..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~----------------~~~~d~vilAtG~~~~  118 (321)
T PRK10262         60 LTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG----------------EYTCDALIIATGASAR  118 (321)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC----------------EEEECEEEECCCCCCC
Confidence            555666777777788888887764 6778888777888877655                7999999999999753

>PLN02507 glutathione reductase

Probab=94.14  E-value=0.24  Score=47.77  Aligned_cols=58  Identities=10%  Similarity=0.181  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++++.++.|++++.+++++.|.+.+|.               ++.+|.|++|+|.-.+.
T Consensus       245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        245 EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGE---------------EFVADVVLFATGRAPNT  302 (499)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCc---------------EEEcCEEEEeecCCCCC
Confidence            45566667788899999999999999877677777776662               79999999999976543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=94.02  E-value=0.17  Score=47.96  Aligned_cols=53  Identities=17%  Similarity=0.063  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .++.+|++.+.  .++++.+++|+.|...+++|.|++++|.               +++||+||+|+.+.
T Consensus       226 ~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~t~P~~  278 (462)
T TIGR00562       226 TLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGV---------------TVETDSVVVTAPHK  278 (462)
T ss_pred             HHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCc---------------EEEcCEEEECCCHH
Confidence            34444444332  2789999999999998888999887772               79999999998864

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07538 hypothetical protein; Provisional

Probab=93.97  E-value=0.27  Score=45.97  Aligned_cols=66  Identities=11%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             ecHHHHHHHHHHHHHH-CCc-EEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           41 VDSHSLMLSLVGEAEN-HGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~-~Gv-~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ++-..+...|.+.+.+ .|. +++.+++|+++..+++++.+.+.++..          +...+++||.||-|-|.+|.
T Consensus        99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~----------g~~~~~~adlvIgADG~~S~  166 (413)
T PRK07538         99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAG----------GDLVSVRGDVLIGADGIHSA  166 (413)
T ss_pred             EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCC----------CccceEEeeEEEECCCCCHH
Confidence            5666777888887765 474 699999999998776666555544321          12347999999999999875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.95  E-value=0.27  Score=46.45  Aligned_cols=56  Identities=18%  Similarity=0.127  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++++.+++|+++..+++.+.+.+++.                ++.+|.||+|+|....
T Consensus       199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~----------------~i~~D~viva~G~~p~  254 (438)
T PRK07251        199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE----------------TYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe----------------EEEcCEEEEeeCCCCC
Confidence            4445556667889999999999999987666666655433                7999999999998654

>PRK07236 hypothetical protein; Provisional

Probab=93.89  E-value=0.26  Score=45.66  Aligned_cols=57  Identities=12%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...|.+.+  .+++++.+++|++++.+++++.|+.++|.               +++||.||.|-|.+|.-
T Consensus       100 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vIgADG~~S~v  156 (386)
T PRK07236        100 NVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGR---------------RETADLLVGADGGRSTV  156 (386)
T ss_pred             HHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCchH
Confidence            34444444322  35689999999999988888888888873               79999999999999864

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.78  E-value=0.28  Score=48.67  Aligned_cols=61  Identities=11%  Similarity=0.070  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHC--------C-----cEEEcCceeEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecC
Q 023079           43 SHSLMLSLVGEAENH--------G-----TTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPK  105 (287)
Q Consensus        43 p~~l~~~l~~~a~~~--------G-----v~~~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~  105 (287)
                      ...++.+|.+.++++        |     +++++++.|+++..+++.+. |..   .++             ....+.|+
T Consensus       137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak  203 (626)
T PRK07803        137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESG-------------RFVLFEAP  203 (626)
T ss_pred             HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCC-------------eEEEEEcC
Confidence            356788888888776        7     99999999999987666542 332   233             23468999


Q ss_pred             EEEEcCCCCch
Q 023079          106 LVVNSAGLSAP  116 (287)
Q Consensus       106 ~VV~aaG~~s~  116 (287)
                      .||+|+|.+..
T Consensus       204 ~VVlATGG~~~  214 (626)
T PRK07803        204 AVVLATGGIGK  214 (626)
T ss_pred             eEEECCCcccC
Confidence            99999998653

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.69  E-value=0.31  Score=48.03  Aligned_cols=60  Identities=15%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..++..|.+.+.+.|++++.++.++++..+ ++.+ .|..   .+|             ....+.|+.||+|+|.++.
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~  212 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETG-------------DVYILEAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCC-------------eEEEEECCeEEECCCCccc
Confidence            568888988888899999999999998865 3444 3443   233             1346899999999999875

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.69  E-value=0.3  Score=48.09  Aligned_cols=61  Identities=10%  Similarity=0.096  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-E---EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-V---YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V---~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++.+|.+.+.+. |+++++++.|+++..+++.+. |   .+.+|             ....+.|+.||+|+|.++.
T Consensus       132 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        132 GFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEG-------------TLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCC-------------cEEEEECCEEEECCCCCcC
Confidence            346778888777765 899999999999987766553 3   23344             1347999999999999874

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.56  E-value=0.35  Score=46.15  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++++++++|++++.+++++.|.+.+|.               ++.+|.||+|+|.-.+.
T Consensus       219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        219 DAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR---------------TVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc---------------EEEecEEEEeecCCcCC
Confidence            44566667778899999999999999876677777776662               79999999999976554

>PRK07208 hypothetical protein; Provisional

Probab=93.48  E-value=0.25  Score=47.13  Aligned_cols=67  Identities=24%  Similarity=0.277  Sum_probs=49.5

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE--EEec--CCcccccCCCCCCCCCceeEecCEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN--VYIS--ESKNLRNWDGVSPLQPELTLIPKLV  107 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~--V~t~--~g~~~~~~~~~~~~~~~~~i~a~~V  107 (287)
                      .+..|.+|.   ..++.+|++.+.+.|++++.+++|++|..+++++.  +...  +|             ...+++||+|
T Consensus       209 ~~~~p~gG~---~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g-------------~~~~~~ad~V  272 (479)
T PRK07208        209 EFRYPKLGP---GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDG-------------TEETVTADQV  272 (479)
T ss_pred             EEeCCCCCc---chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCC-------------CEEEEEcCEE
Confidence            345566653   47888999989999999999999999998876642  3322  23             1236899999


Q ss_pred             EEcCCCC
Q 023079          108 VNSAGLS  114 (287)
Q Consensus       108 V~aaG~~  114 (287)
                      |.|+.++
T Consensus       273 I~a~p~~  279 (479)
T PRK07208        273 ISSMPLR  279 (479)
T ss_pred             EECCCHH
Confidence            9998875

>PLN02985 squalene monooxygenase

Probab=93.39  E-value=0.45  Score=46.09  Aligned_cols=69  Identities=17%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             eeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           39 GIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..++-.++...|.+.+.+. |++++.+ .|+++..+++.+ .|+  +.+|.             +.+++||.||.|.|.+
T Consensus       142 ~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~-------------~~~~~AdLVVgADG~~  207 (514)
T PLN02985        142 RSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGE-------------ETTALAPLTVVCDGCY  207 (514)
T ss_pred             eeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCC-------------EEEEECCEEEECCCCc
Confidence            3566678889999888776 7898865 577776655543 343  34451             3467899999999998


Q ss_pred             chHHHHHh
Q 023079          115 APALAKRF  122 (287)
Q Consensus       115 s~~l~~~~  122 (287)
                      |. +-+.+
T Consensus       208 S~-vR~~l  214 (514)
T PLN02985        208 SN-LRRSL  214 (514)
T ss_pred             hH-HHHHh
Confidence            85 43444

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.37  E-value=0.34  Score=47.58  Aligned_cols=60  Identities=15%  Similarity=0.118  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..++..|.+.+.+ .|+++++++.|+++..+++.+ .|.   +.++             +...+.|+.||+|+|.++.
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~~  201 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRG-------------EFKVFQAKAGIIATGGAGR  201 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCcEEEcCchhcc
Confidence            4577888888776 699999999999998766654 232   2334             1246899999999999853

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=93.33  E-value=0.34  Score=48.25  Aligned_cols=64  Identities=17%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             ecHHHHHHHHHHHHHHCCc-EEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           41 VDSHSLMLSLVGEAENHGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv-~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      +.=..|...|.+   ..+. .++++++|++++..++++.|++.+|.               ++++|.||.|.|+||.--.
T Consensus       191 I~R~~L~~~L~~---alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~---------------ti~aDlVVGADG~~S~vR~  252 (668)
T PLN02927        191 ISRMTLQQILAR---AVGEDVIRNESNVVDFEDSGDKVTVVLENGQ---------------RYEGDLLVGADGIWSKVRN  252 (668)
T ss_pred             EeHHHHHHHHHh---hCCCCEEEcCCEEEEEEEeCCEEEEEECCCC---------------EEEcCEEEECCCCCcHHHH
Confidence            333445555533   2344 46788899999988889999888873               7999999999999997765


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      .++
T Consensus       253 ~l~  255 (668)
T PLN02927        253 NLF  255 (668)
T ss_pred             Hhc
Confidence            555

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=93.27  E-value=0.4  Score=47.35  Aligned_cols=64  Identities=11%  Similarity=-0.017  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHH----CCcEEEcCceeEEEEEeC-CeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAEN----HGTTFSNNTSVIGGHLEG-NCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~----~Gv~~~~~~~V~~i~~~~-~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.+++    .|++++++++|+++..++ +++ .|...+..+          +....+.|+.||+|||.++.
T Consensus       128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~----------g~~~~i~AkaVVLATGG~g~  197 (603)
T TIGR01811       128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVT----------GEIETHSADAVILATGGYGN  197 (603)
T ss_pred             hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCC----------CcEEEEEcCEEEECCCCCcC
Confidence            34556666555543    489999999999997653 344 354432100          11346899999999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.16  E-value=0.47  Score=45.19  Aligned_cols=59  Identities=17%  Similarity=0.209  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++++.+++|+++..+++.+.|++.  +|.             ..++.+|.||+|+|.-.+
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~-------------~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGK-------------AQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCC-------------eEEEEeCEEEECcCcccC
Confidence            45677778888999999999999999876666655443  441             236999999999997544

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.07  E-value=0.44  Score=45.30  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++++++|++++.+++.+.+.+. |.             ..++.+|.||+|+|...+
T Consensus       211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~-g~-------------~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYE-GS-------------IQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEEC-Cc-------------eEEEEeCEEEEecCCccC
Confidence            356677777888899999999999999876555555543 31             126999999999997644

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=92.91  E-value=0.46  Score=45.42  Aligned_cols=62  Identities=11%  Similarity=0.062  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++.+++|++++.+++++.|...++.           +.+.++.+|.||+|+|.-.+
T Consensus       224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~-----------g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDAD-----------GEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCC-----------CceeEEEcCEEEEccCCccC
Confidence            455667777788899999999999999877666666544321           11237999999999997654

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=92.89  E-value=0.52  Score=46.38  Aligned_cols=61  Identities=11%  Similarity=0.090  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++.+|.+.+.+. |+++++++.++++..+++++. |.   ..+|             ....+.|+.||+|+|.++.
T Consensus       131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEG-------------RLVTILADAVVLATGGAGR  196 (580)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCC-------------cEEEEecCEEEEcCCCCcc
Confidence            467888888887764 899999999999987766553 33   2344             1347999999999999875

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PLN02568 polyamine oxidase

Probab=92.78  E-value=0.36  Score=47.07  Aligned_cols=54  Identities=13%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .++.+|++.+.  +.+|+.+++|+.|...++++.|++.+|.               +++||+||+|.-+..
T Consensus       243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~---------------~~~aD~VIvTvPl~v  296 (539)
T PLN02568        243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGS---------------TMTADHVIVTVSLGV  296 (539)
T ss_pred             HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCC---------------EEEcCEEEEcCCHHH
Confidence            46666665442  4468999999999998889999998873               799999999988543

>TIGR02053 MerA mercuric reductase

Probab=92.76  E-value=0.5  Score=44.97  Aligned_cols=60  Identities=7%  Similarity=0.089  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.+++.|++++.+++|+.+..+++.+.|++....+            ..++.+|.||+|+|.-..
T Consensus       208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~------------~~~i~~D~ViiA~G~~p~  267 (463)
T TIGR02053       208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGG------------QGEVEADELLVATGRRPN  267 (463)
T ss_pred             HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCC------------ceEEEeCEEEEeECCCcC
Confidence            345666677788999999999999998766655555432100            127999999999996443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=92.73  E-value=0.41  Score=44.10  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .+| ..+..++.+.+++.|..|+.+++|++.+..++ .+.|+..+-.++|          +.+++||.+.+|.|-
T Consensus       249 ~mD-~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k----------~~tle~DvlLVsiGR  312 (506)
T KOG1335|consen  249 VMD-GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGK----------KETLECDVLLVSIGR  312 (506)
T ss_pred             ccC-HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCc----------eeEEEeeEEEEEccC
Confidence            345 45677788888999999999999999999877 5666555443323          568999999999994

>PLN02661 Putative thiazole synthesis

Probab=92.73  E-value=0.69  Score=42.45  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=46.4

Q ss_pred             cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEec------CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYIS------ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +...++..|.+.+.+ .|+++++++.|+++..+++++ .|.+.      ++.+       ....++..|+|+.||+|||.
T Consensus       170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~-------~s~~dp~~I~AkaVVlATGh  242 (357)
T PLN02661        170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDT-------QSCMDPNVMEAKVVVSSCGH  242 (357)
T ss_pred             chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCC-------CCccceeEEECCEEEEcCCC
Confidence            556777888887765 689999999999998877654 34431      1100       00012357999999999997


Q ss_pred             Cch
Q 023079          114 SAP  116 (287)
Q Consensus       114 ~s~  116 (287)
                      -.+
T Consensus       243 ~g~  245 (357)
T PLN02661        243 DGP  245 (357)
T ss_pred             CCc
Confidence            654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.66  E-value=0.35  Score=44.69  Aligned_cols=58  Identities=19%  Similarity=-0.005  Sum_probs=41.8

Q ss_pred             eecHHHHHHH-HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLS-LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~-l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ...+..+... ....++++|++++.+++|+++..++.  .|.++++                ++.+|+||+|+|+..
T Consensus        53 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~~~~----------------~~~yd~LVlATG~~~  111 (377)
T PRK04965         53 GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKSQGN----------------QWQYDKLVLATGASA  111 (377)
T ss_pred             CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEECCe----------------EEeCCEEEECCCCCC
Confidence            3455555542 33446778999999999999987654  4555433                799999999999853

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=92.65  E-value=0.32  Score=45.93  Aligned_cols=58  Identities=9%  Similarity=0.091  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC-CcccccCCCCCCCCCceeEe--cCEEEEcCCCCc
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE-SKNLRNWDGVSPLQPELTLI--PKLVVNSAGLSA  115 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~-g~~~~~~~~~~~~~~~~~i~--a~~VV~aaG~~s  115 (287)
                      +..++....+.+++.|++++.+++|+++..+++.+.++... +   +            .++  +|++|+|+|...
T Consensus        55 ~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~---~------------~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         55 PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTG---S------------IFNDTYDKLMIATGARP  115 (444)
T ss_pred             HHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCC---C------------EEEecCCEEEECCCCCC
Confidence            44444444556777899999899999998877777766432 3   1            455  999999999853

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=92.63  E-value=0.56  Score=46.45  Aligned_cols=61  Identities=15%  Similarity=0.044  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC---CeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG---NCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~---~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +.+.+.+.+.+.+.++++++++.|+++..++   +++ .|..   .+|             ..+.+.|+.||+|||.|+.
T Consensus       126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRAN-------------EVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCC-------------cEEEEECCEEEECCCcccc
Confidence            3455555556667778999999999998754   343 3432   233             2457899999999999975


Q ss_pred             H
Q 023079          117 A  117 (287)
Q Consensus       117 ~  117 (287)
                      .
T Consensus       193 l  193 (614)
T TIGR02061       193 V  193 (614)
T ss_pred             c
Confidence            3

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06370 mercuric reductase; Validated

Probab=92.62  E-value=0.55  Score=44.67  Aligned_cols=58  Identities=12%  Similarity=0.139  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++++++++|.+++..++...|..  .++              ..++.+|.||+|+|.-.+
T Consensus       213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~--------------~~~i~~D~Vi~A~G~~pn  272 (463)
T PRK06370        213 DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGG--------------APEITGSHILVAVGRVPN  272 (463)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCC--------------ceEEEeCEEEECcCCCcC
Confidence            4556677778889999999999999987666554443  222              127999999999996544

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=92.61  E-value=0.47  Score=43.46  Aligned_cols=59  Identities=14%  Similarity=0.200  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      .+...+.+.++++|++++.+++|.++..  +  .|.+.+|.               ++.+|.||+|+|...+..+...
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~---------------~i~~D~vi~a~G~~p~~~l~~~  250 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGR---------------TLPADAILWATGARAPPWLAES  250 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCC---------------EEecCEEEEccCCChhhHHHHc
Confidence            3556667778899999999999988853  3  46666662               7999999999998877655544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=92.36  E-value=0.52  Score=45.29  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|+++++++.|+++...+++ ..|++.++.               ++++|.||+|+|.-.+.
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGK---------------TLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCC---------------EEEcCEEEEeeCCCcCc
Confidence            455677778888999999999999999875443 556665552               79999999999965443

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=92.29  E-value=0.52  Score=45.26  Aligned_cols=60  Identities=18%  Similarity=0.109  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++|++++.++.+...++...|+..++..            ..++.+|.||+|+|.-.+
T Consensus       221 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~------------~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       221 DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTN------------GIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCc------------ceEEEeCEEEEEecCCcC
Confidence            455666777888999999999998888766665565544411            126999999999997543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=92.29  E-value=0.04  Score=52.04  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++|..+-..|.+.+.+.|++++.++.|.++..+++++. |++.  +|              ..+|+|+.||-|+|-  
T Consensus        85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g--------------~~~i~A~~~IDaTG~--  148 (428)
T PF12831_consen   85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG--------------RKEIRAKVFIDATGD--  148 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--------------ccccccccccccccc--
Confidence            3578888888888888888999999999999999886653 5543  34              238999999999994  


Q ss_pred             hHHHHHh
Q 023079          116 PALAKRF  122 (287)
Q Consensus       116 ~~l~~~~  122 (287)
                      ..|+...
T Consensus       149 g~l~~~a  155 (428)
T PF12831_consen  149 GDLAALA  155 (428)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            4665555

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=92.24  E-value=0.59  Score=45.61  Aligned_cols=72  Identities=11%  Similarity=0.019  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHH---HC-CcEEEcCceeEEEEEeCCeE-EEEec---CC-c-ccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           44 HSLMLSLVGEAE---NH-GTTFSNNTSVIGGHLEGNCM-NVYIS---ES-K-NLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        44 ~~l~~~l~~~a~---~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~---~g-~-~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ..++..|.+.++   +. |++|+++++++++..+++++ .|...   .+ . .+|+  .....+..+.|.|+.||+|||.
T Consensus       148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~--~~~~~~~~~~i~AkaVILATGG  225 (549)
T PRK12834        148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEA--SSREVVGEFELRAQAVIVTSGG  225 (549)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEeccccccccccc--ccccccceEEEecCEEEEeCCC
Confidence            356677765554   23 69999999999998776655 35431   10 0 0000  0000012357899999999999


Q ss_pred             CchH
Q 023079          114 SAPA  117 (287)
Q Consensus       114 ~s~~  117 (287)
                      ++..
T Consensus       226 f~~n  229 (549)
T PRK12834        226 IGGN  229 (549)
T ss_pred             cccC
Confidence            8854

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.22  E-value=0.56  Score=44.57  Aligned_cols=59  Identities=8%  Similarity=0.025  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++++.++.|+++..++++ ..|++++|.              ..+.+|.||+|+|.-.+.
T Consensus       208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~--------------~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK--------------SIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc--------------EEEEcCEEEEeeCCCcCc
Confidence            45566777888899999999999999875443 566666551              269999999999976554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK09077 L-aspartate oxidase; Provisional

Probab=92.22  E-value=0.59  Score=45.48  Aligned_cols=60  Identities=22%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHC-CcEEEcCceeEEEEEeC------CeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           44 HSLMLSLVGEAENH-GTTFSNNTSVIGGHLEG------NCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        44 ~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~------~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      ..+...|.+.++++ |+++++++.|+++..++      +++ .|...   ++             ....+.|+.||+|+|
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlATG  204 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKE-------------RVETIRAKFVVLATG  204 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCC-------------cEEEEecCeEEECCC
Confidence            56778888877765 89999999999987643      444 34432   23             234799999999999


Q ss_pred             CCch
Q 023079          113 LSAP  116 (287)
Q Consensus       113 ~~s~  116 (287)
                      .++.
T Consensus       205 G~~~  208 (536)
T PRK09077        205 GASK  208 (536)
T ss_pred             CCCC
Confidence            9874

>PRK07395 L-aspartate oxidase; Provisional

Probab=92.20  E-value=0.38  Score=46.99  Aligned_cols=61  Identities=10%  Similarity=0.084  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeC--CeE-EEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEG--NCM-NVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~--~~~-~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..|.+.++++ |+++++++.|+++..++  +.+ .|... +|             ....+.|+.||+|||.++.
T Consensus       133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g-------------~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQG-------------QITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECC-------------eEEEEEcCEEEEcCCCCcc
Confidence            356788888888754 99999999999997753  443 34332 33             1235899999999999643

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.08  E-value=0.25  Score=50.33  Aligned_cols=59  Identities=20%  Similarity=0.190  Sum_probs=44.6

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++..+.....+..+++|++++.+++|++++.+.  ..|++.+|.               ++.+|++|+|+|+..
T Consensus        50 ~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~---------------~~~yD~LVlATGs~p  108 (785)
T TIGR02374        50 EADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ--KQVITDAGR---------------TLSYDKLILATGSYP  108 (785)
T ss_pred             CCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC--CEEEECCCc---------------EeeCCEEEECCCCCc
Confidence            34555555445556678899999999999998754  357777773               799999999999753

>PTZ00052 thioredoxin reductase; Provisional

Probab=92.07  E-value=0.62  Score=44.93  Aligned_cols=58  Identities=17%  Similarity=0.149  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++++.++.++.+...++...|.+.+|.               ++.+|.|++|+|.-.+.
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT---------------TELFDTVLYATGRKPDI  280 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEcCEEEEeeCCCCCc
Confidence            34566777788899999999999988876556667766662               68999999999986553

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=92.06  E-value=0.36  Score=43.59  Aligned_cols=61  Identities=16%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .++-.+|.+..++.|+....+.+|.+.+..+++++ |.|.+..             .+.++||..|+|+|.+.++
T Consensus       258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~-------------diP~~a~~~VLAsGsffsk  319 (421)
T COG3075         258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHA-------------DIPLRADFYVLASGSFFSK  319 (421)
T ss_pred             hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccc-------------cCCCChhHeeeeccccccc
Confidence            35566777788899999999999999999999886 8887552             3579999999999987655

>PLN02815 L-aspartate oxidase

Probab=91.84  E-value=0.54  Score=46.35  Aligned_cols=62  Identities=13%  Similarity=0.139  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeC-Ce---E-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEG-NC---M-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~-~~---~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      ....++.+|.+.++++ |+++++++.++++..++ ++   + .|..   .+|             ....+.|+.||+|||
T Consensus       153 tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g-------------~~~~i~AkaVILATG  219 (594)
T PLN02815        153 TGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTG-------------EVVRFISKVTLLASG  219 (594)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCC-------------eEEEEEeceEEEcCC
Confidence            3456888898888765 89999999999988643 31   3 3443   233             235789999999999


Q ss_pred             CCch
Q 023079          113 LSAP  116 (287)
Q Consensus       113 ~~s~  116 (287)
                      .+..
T Consensus       220 G~g~  223 (594)
T PLN02815        220 GAGH  223 (594)
T ss_pred             ccee
Confidence            8875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=91.81  E-value=0.76  Score=43.77  Aligned_cols=68  Identities=16%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             EcCCceee--cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           34 LSPASGIV--DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        34 ~~p~~g~v--dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      ....+..+  ....+...+.+.+++.|++++++++|+.++..++++.|++++|..             .+++||+|++|+
T Consensus       202 ie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~-------------~~~~ad~vLvAi  268 (454)
T COG1249         202 VERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEG-------------GTIEADAVLVAI  268 (454)
T ss_pred             EecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCC-------------CEEEeeEEEEcc
Confidence            44444433  245677778888888889999999999998877777788877721             168999999999


Q ss_pred             CCC
Q 023079          112 GLS  114 (287)
Q Consensus       112 G~~  114 (287)
                      |--
T Consensus       269 GR~  271 (454)
T COG1249         269 GRK  271 (454)
T ss_pred             CCc
Confidence            953

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=91.62  E-value=0.66  Score=43.67  Aligned_cols=59  Identities=20%  Similarity=0.192  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      .+...+.+.++++|++++.+++|.++..  +  .|.+++|.               ++.+|.||.|+|.-.+.+.+.+
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~---------------~i~~d~vi~~~G~~~~~~~~~~  287 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGE---------------VIPTGLVVWSTGVGPGPLTKQL  287 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCC---------------EEEccEEEEccCCCCcchhhhc
Confidence            5666677778899999999999988853  3  35667772               7999999999998777666555

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=91.60  E-value=0.78  Score=42.63  Aligned_cols=66  Identities=14%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK  120 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~  120 (287)
                      ...+...|.+++.+.|++++.+.+++.+.. +++.+.|+.. +|.             +.+++||.||-|-|.+|. +-+
T Consensus       102 ~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~-------------~~~i~adlvIGADG~~S~-VR~  167 (390)
T TIGR02360       102 QTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGE-------------RHRLDCDFIAGCDGFHGV-SRA  167 (390)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCe-------------EEEEEeCEEEECCCCchh-hHH
Confidence            356778888888888999988888877755 4455666654 552             236999999999999985 434


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       168 ~l  169 (390)
T TIGR02360       168 SI  169 (390)
T ss_pred             hc
Confidence            44

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=91.55  E-value=0.52  Score=44.56  Aligned_cols=49  Identities=18%  Similarity=0.147  Sum_probs=37.6

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ++.|++++.+++|+++..+++.+.+.+.++.            ..+++++|++|+|+|+..
T Consensus        69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~------------~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDERQTVTVLNRKTN------------EQFEESYDKLILSPGASA  117 (438)
T ss_pred             HhCCCEEEeCCEEEEEECCCCEEEEEECCCC------------cEEeeecCEEEECCCCCC
Confidence            4579999999999999988877777654321            123578999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=91.49  E-value=0.83  Score=43.60  Aligned_cols=60  Identities=20%  Similarity=0.159  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++.+++|+++.. +++++. +.+.+|.             +.++.+|.||+|+|.-.+
T Consensus       221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~-------------~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGE-------------EKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCc-------------eEEEEeCEEEEeeCCccC
Confidence            34556677778889999999999999975 234443 4455551             236999999999998644

>PRK07846 mycothione reductase; Reviewed

Probab=91.09  E-value=0.83  Score=43.41  Aligned_cols=56  Identities=9%  Similarity=0.173  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      +...+.+ ..+.|++++.+++|++++.+++++.|++.+|.               ++.+|.||+|+|.-.+.
T Consensus       209 ~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        209 ISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGS---------------TVEADVLLVATGRVPNG  264 (451)
T ss_pred             HHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCc---------------EeecCEEEEEECCccCc
Confidence            3344433 34568999999999999877667777776662               79999999999986543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=91.06  E-value=0.35  Score=45.91  Aligned_cols=106  Identities=17%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             chhcCCCeeeeeCHHH------HHhhCCCccc-----ceeE-EcCC--ceeecHHH-HHHHHHHHHHHCCc--EEEcCce
Q 023079            4 GTANGVHGLRMLEGFE------AMKMEPELQC-----VKAL-LSPA--SGIVDSHS-LMLSLVGEAENHGT--TFSNNTS   66 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~e------i~~~~P~l~~-----~~al-~~p~--~g~vdp~~-l~~~l~~~a~~~Gv--~~~~~~~   66 (287)
                      .++.|++++.++++.+      =..++|.+..     .-++ +.|.  .....+.. +-.-+...+++.+.  .+..++.
T Consensus        27 L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~  106 (443)
T COG2072          27 LKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTR  106 (443)
T ss_pred             HHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccc
Confidence            4667775577777774      2336777641     1111 2222  22232222 22333344555554  3445555


Q ss_pred             eEEEEEe--CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           67 VIGGHLE--GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        67 V~~i~~~--~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      |..+..+  ++.|.|+++++..             .+++||+||+|+|.++....+.+
T Consensus       107 v~~~~~~~~~~~w~V~~~~~~~-------------~~~~a~~vV~ATG~~~~P~iP~~  151 (443)
T COG2072         107 VEVADWDEDTKRWTVTTSDGGT-------------GELTADFVVVATGHLSEPYIPDF  151 (443)
T ss_pred             eEEEEecCCCCeEEEEEcCCCe-------------eeEecCEEEEeecCCCCCCCCCC
Confidence            5555443  4589999998831             12789999999999776655444

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=90.89  E-value=1.1  Score=41.95  Aligned_cols=61  Identities=16%  Similarity=0.133  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      .+...+.+.++++|++++.+++|.++..++ .+ +.+.+|.               ++.+|.||+|+|...+ .+++.+
T Consensus       180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~---------------~i~~D~vi~a~G~~p~~~~l~~~  241 (427)
T TIGR03385       180 EMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGG---------------VYQADMVILATGIKPNSELAKDS  241 (427)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCC---------------EEEeCEEEECCCccCCHHHHHhc
Confidence            455667777888999999999999997643 33 4445552               7999999999998765 455554

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=90.87  E-value=0.49  Score=43.30  Aligned_cols=46  Identities=20%  Similarity=0.222  Sum_probs=33.0

Q ss_pred             CcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           58 GTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        58 Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      -++++.+++|++++..+ ++|.+++.+..          ++++.++++|.||+|||-
T Consensus       293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQ----------TGEEETLEVDAVILATGY  339 (341)
T ss_dssp             -SEEETTEEEEEEEEES-SSEEEEEEETT----------T--EEEEEESEEEE---E
T ss_pred             CeEEeCCCEEEEEEECCCCEEEEEEEECC----------CCCeEEEecCEEEEcCCc
Confidence            48899999999999987 48888776542          234578999999999994

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=90.86  E-value=0.72  Score=43.42  Aligned_cols=71  Identities=10%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             CceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           37 ASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        37 ~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      -.|..++..+...+...+...|++|.. .+|++|+.+++.+.+.+.+...       ..+....++.+|++|+|+|+..
T Consensus        55 ~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~-------~~~~~g~~i~yD~LViAtGs~~  125 (424)
T PTZ00318         55 TTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSN-------NANVNTFSVPYDKLVVAHGARP  125 (424)
T ss_pred             cccCCChHHhHHHHHHHhccCCeEEEE-EEEEEEEcCCCEEEEecccccc-------cccCCceEecCCEEEECCCccc
Confidence            345666777777777777778898875 6999998887777663321100       0000012799999999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.80  E-value=1.2  Score=42.50  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+...+.+.++++|++++.+++|++++.+++++.++..   +|             ....+.+|.||+|+|.-.
T Consensus       216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        216 ETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGG-------------AAETLQADYVLVAIGRRP  276 (466)
T ss_pred             HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCC-------------ceeEEEeCEEEEccCCcc
Confidence            35566777788899999999999999876566654432   22             123799999999999753

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=90.78  E-value=0.7  Score=43.41  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             HHHHHHHHHH-HCCcEEEcCceeEEEEEeCCeEEEEecC-CcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           46 LMLSLVGEAE-NHGTTFSNNTSVIGGHLEGNCMNVYISE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        46 l~~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~V~t~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      -+..|.+++. +.|-.|..+.+|..|...+++|.|++.+ +                ++.+|++|++.-.
T Consensus       207 Gmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~----------------~~~ad~~i~tiPl  260 (450)
T COG1231         207 GMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVG----------------QYVADYVLVTIPL  260 (450)
T ss_pred             cHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcc----------------eEEecEEEEecCH
Confidence            3455665544 5688899999999999999999999998 6                8999999999764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=90.71  E-value=0.69  Score=43.45  Aligned_cols=47  Identities=21%  Similarity=0.171  Sum_probs=35.9

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEe--cCEEEEcCCCC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLI--PKLVVNSAGLS  114 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~--a~~VV~aaG~~  114 (287)
                      +.+.|++++.+++|+++..+++.+.+.+..+  ++            +++  +|+||+|+|+.
T Consensus        54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~--~~------------~~~~~yd~lIiATG~~  102 (427)
T TIGR03385        54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKT--NE------------TYEESYDYLILSPGAS  102 (427)
T ss_pred             HHhcCCeEEecCEEEEEECCCCEEEEEECCC--CC------------EEecCCCEEEECCCCC
Confidence            3778999988999999987777776665322  11            566  99999999984

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=90.64  E-value=0.27  Score=43.20  Aligned_cols=58  Identities=16%  Similarity=-0.028  Sum_probs=42.7

Q ss_pred             HHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           48 LSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        48 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      .+|++.+ ....+++++++|+.+.+.++.|.+.+++|.+              ...+|.||+|.-+  ++....+
T Consensus       108 salak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~--------------~~~~d~vvla~PA--PQ~~~LL  165 (331)
T COG3380         108 SALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTR--------------HTQFDDVVLAIPA--PQTATLL  165 (331)
T ss_pred             HHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCc--------------ccccceEEEecCC--Ccchhhc
Confidence            4454433 3357788899999999999999999988742              7899999999653  4444333

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=90.57  E-value=0.85  Score=43.22  Aligned_cols=60  Identities=22%  Similarity=0.237  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI  123 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~  123 (287)
                      ..|..+|.+....+   ++++++|+.|.+++.++.+.+.+|.               +++||.||+++-+  ..+.+.++
T Consensus       215 ~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~~~~~~g~---------------~~~~D~VI~t~p~--~~l~~ll~  274 (444)
T COG1232         215 QSLIEALAEKLEAK---IRTGTEVTKIDKKGAGKTIVDVGGE---------------KITADGVISTAPL--PELARLLG  274 (444)
T ss_pred             HHHHHHHHHHhhhc---eeecceeeEEEEcCCccEEEEcCCc---------------eEEcceEEEcCCH--HHHHHHcC
Confidence            46667776665554   8999999999998777777777773               7999999999876  46666664

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=90.38  E-value=1  Score=46.08  Aligned_cols=61  Identities=21%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079           47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF  122 (287)
Q Consensus        47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~  122 (287)
                      ...+.+..+++|+++++++.++++..++....|++.+|.               ++.+|.||+|+|.-.+. +++..
T Consensus       185 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~---------------~i~~D~Vi~a~G~~Pn~~la~~~  246 (785)
T TIGR02374       185 GRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGS---------------SLEADLIVMAAGIRPNDELAVSA  246 (785)
T ss_pred             HHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCC---------------EEEcCEEEECCCCCcCcHHHHhc
Confidence            355566778899999999999988765444457777773               79999999999987543 44433

>PLN02529 lysine-specific histone demethylase 1

Probab=90.36  E-value=0.78  Score=46.32  Aligned_cols=41  Identities=12%  Similarity=0.137  Sum_probs=34.5

Q ss_pred             CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           58 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        58 Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +..|+.+++|++|...+++|.|++.++                +++||+||+|.-..
T Consensus       366 ~L~IrLnt~V~~I~~~~dGVtV~t~~~----------------~~~AD~VIVTVPlg  406 (738)
T PLN02529        366 GVPIFYGKTVDTIKYGNDGVEVIAGSQ----------------VFQADMVLCTVPLG  406 (738)
T ss_pred             cCCEEcCCceeEEEEcCCeEEEEECCE----------------EEEcCEEEECCCHH
Confidence            456899999999999888999876544                79999999998754

>TIGR03452 mycothione_red mycothione reductase

Probab=90.14  E-value=1.3  Score=42.19  Aligned_cols=56  Identities=7%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      +...+.+ ..+.|++++++++|++++.+++++.|++.+|.               ++.+|.|++|+|.-.+.
T Consensus       212 ~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       212 ISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGS---------------TVTADVLLVATGRVPNG  267 (452)
T ss_pred             HHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCC---------------EEEcCEEEEeeccCcCC
Confidence            3344443 34568999999999999877667777776662               79999999999975543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN03000 amine oxidase

Probab=89.90  E-value=0.65  Score=47.56  Aligned_cols=51  Identities=14%  Similarity=0.123  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++.+|++..     .++.+++|+.|...++++.|++.++                +++||+||+|.-+..
T Consensus       381 ~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~V~~~~~----------------~~~AD~VIvTVPlgV  431 (881)
T PLN03000        381 GRLVQALAENV-----PILYEKTVQTIRYGSNGVKVIAGNQ----------------VYEGDMVLCTVPLGV  431 (881)
T ss_pred             HHHHHHHHhhC-----CcccCCcEEEEEECCCeEEEEECCc----------------EEEeceEEEcCCHHH
Confidence            35555555433     4888999999999888999987654                799999999987643

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=89.89  E-value=0.42  Score=44.49  Aligned_cols=63  Identities=16%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      -+=|.-+.+.-++..++.||.++-+..|.++.+....+.++.++|.               +++.|+||+|.|.--+.
T Consensus       389 kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~---------------~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  389 KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGS---------------ELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCC---------------eeeeeeEEEEecCCCch
Confidence            4457777777777888889999999999998876666788999994               89999999999976443

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.88  E-value=1.6  Score=43.09  Aligned_cols=65  Identities=11%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHHHHHHCC----cEEEcCceeEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           42 DSHSLMLSLVGEAENHG----TTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~G----v~~~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ....++..|.+.+++.+    +++++++.++++..+ ++.+ .|...+..+          ++.+.+.|+.||+|||.++
T Consensus       131 tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~----------g~~~~i~AkaVILATGG~~  200 (589)
T PRK08641        131 TGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFT----------MEIESFPADAVIMATGGPG  200 (589)
T ss_pred             cHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCC----------CcEEEEECCEEEECCCCCc
Confidence            35667888887776543    789999999998874 4544 354322100          1234689999999999988


Q ss_pred             h
Q 023079          116 P  116 (287)
Q Consensus       116 ~  116 (287)
                      .
T Consensus       201 ~  201 (589)
T PRK08641        201 I  201 (589)
T ss_pred             C
Confidence            6

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.18  E-value=1.6  Score=41.53  Aligned_cols=60  Identities=17%  Similarity=0.034  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHCCc--EEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           45 SLMLSLVGEAENHGT--TFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .++.-|-..|+..+.  .|.++++|..+...+ +.|.|.+.++..           +.....+|.||+|+|.+.
T Consensus        91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~-----------~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen   91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGT-----------QIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             HHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCc-----------ceeEEEeeEEEEcccCcC
Confidence            555555566776664  688899999998887 799998876621           134788999999999995

>PTZ00058 glutathione reductase; Provisional

Probab=88.91  E-value=2.2  Score=41.86  Aligned_cols=58  Identities=12%  Similarity=0.164  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++|++++.++.|.+++.+++ ++.+...++.              .++.+|.|++|+|.-..
T Consensus       279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~--------------~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGR--------------KYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCC--------------EEEECCEEEECcCCCCC
Confidence            4556677788889999999999999986543 4555443331              26999999999996533

>PLN02576 protoporphyrinogen oxidase

Probab=88.77  E-value=1.5  Score=41.94  Aligned_cols=52  Identities=23%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCe-EEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           45 SLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNC-MNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        45 ~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~-~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .++.+|++.   .+ .+++.+++|++|+..+++ |.|+..  +|.              .+++||+||+|+-+
T Consensus       240 ~L~~~la~~---l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~--------------~~~~ad~VI~a~P~  295 (496)
T PLN02576        240 TLPDALAKR---LGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGK--------------VNVTAKAVVMTAPL  295 (496)
T ss_pred             HHHHHHHHh---hCcCcEEcCCEEEEEEECCCCcEEEEEecCCCc--------------eeEEeCEEEECCCH
Confidence            455555433   35 689999999999988775 766543  331              26999999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=88.70  E-value=0.96  Score=46.57  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +..+........+++|++++.+++|+++..+.  ..|.+.+|.               ++++|++|+|+|++.
T Consensus        58 ~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~---------------~i~yD~LVIATGs~p  113 (847)
T PRK14989         58 AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGR---------------TVFYDKLIMATGSYP  113 (847)
T ss_pred             HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCc---------------EEECCEEEECCCCCc
Confidence            34444444455677899999999999987753  346677772               799999999999863

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=88.35  E-value=1.4  Score=41.02  Aligned_cols=46  Identities=4%  Similarity=0.063  Sum_probs=36.2

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..++|++++.++.|+.+..++.  .|.+++|.               ++.+|++|+|+|+...
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~---------------~~~yd~LViATGs~~~  113 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTR--ELVLTNGE---------------SWHWDQLFIATGAAAR  113 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCC--EEEECCCC---------------EEEcCEEEEccCCCCC
Confidence            4567999999999999987643  45566662               7999999999998753

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=87.97  E-value=2.1  Score=40.92  Aligned_cols=60  Identities=12%  Similarity=0.088  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+...+.+.++++ ++++.+++|++++..++.+.|+..++.           ++..++.+|.||+|+|.-.+
T Consensus       216 ~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~-----------~~~~~i~~D~vi~a~G~~pn  275 (471)
T PRK06467        216 DIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKK-----------APAEPQRYDAVLVAVGRVPN  275 (471)
T ss_pred             HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCC-----------CcceEEEeCEEEEeeccccc
Confidence            4456666777777 999999999999877667666654331           01236999999999998654

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=87.94  E-value=2.1  Score=45.70  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHH---CCcEEEcCceeEEEEEeC-----C----eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           44 HSLMLSLVGEAEN---HGTTFSNNTSVIGGHLEG-----N----CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        44 ~~l~~~l~~~a~~---~Gv~~~~~~~V~~i~~~~-----~----~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      ..++..|.+.+++   .|++|+++++++++..++     +    ++ .|...+..        ...++.+.|.|+.||+|
T Consensus       544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~--------~~~g~~~~i~AkaVILA  615 (1167)
T PTZ00306        544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS--------DASGQVMDLLADAVILA  615 (1167)
T ss_pred             HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc--------cCCCcEEEEEeceEEEe
Confidence            4567777777665   499999999999998753     1    34 24433110        00112457999999999


Q ss_pred             CCCCch
Q 023079          111 AGLSAP  116 (287)
Q Consensus       111 aG~~s~  116 (287)
                      ||.+..
T Consensus       616 TGGf~~  621 (1167)
T PTZ00306        616 TGGFSN  621 (1167)
T ss_pred             cCCccc
Confidence            999886

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=87.58  E-value=2.6  Score=43.42  Aligned_cols=61  Identities=18%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHCCcEEEcCceeEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079           47 MLSLVGEAENHGTTFSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF  122 (287)
Q Consensus        47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~  122 (287)
                      ...+.+.++++|++++.++.++++..+++  ...|.+.+|.               ++.+|.||+|+|.-.+. |++..
T Consensus       190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~---------------~i~~D~Vv~A~G~rPn~~L~~~~  253 (847)
T PRK14989        190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGS---------------ELEVDFIVFSTGIRPQDKLATQC  253 (847)
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCC---------------EEEcCEEEECCCcccCchHHhhc
Confidence            45566778899999999999999976532  3457777773               79999999999987665 44444

>PLN02546 glutathione reductase

Probab=87.32  E-value=2.4  Score=41.57  Aligned_cols=58  Identities=9%  Similarity=-0.011  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++++.++.|+++... ++.+.|++.++               ....+|.||+|+|.-.+.
T Consensus       294 ~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g---------------~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        294 EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG---------------TVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe---------------EEEecCEEEEeeccccCC
Confidence            44455667778899999999999999764 34456666555               134489999999987654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=87.32  E-value=2.2  Score=40.64  Aligned_cols=53  Identities=19%  Similarity=0.133  Sum_probs=36.1

Q ss_pred             HHHHHHHHCCcEEEcCceeEEEE--EeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           49 SLVGEAENHGTTFSNNTSVIGGH--LEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        49 ~l~~~a~~~Gv~~~~~~~V~~i~--~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+.+.+++.|++++.++ +..+.  ...+.+.|++.+|.             ..++.+|+||+|+|+..
T Consensus        97 ~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~-------------~~~~~~d~lViATGs~p  151 (466)
T PRK07845         97 DIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGG-------------EETLDADVVLIATGASP  151 (466)
T ss_pred             HHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCc-------------eEEEecCEEEEcCCCCC
Confidence            34445667899998764 43433  34466778877662             12699999999999854

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=86.89  E-value=2.6  Score=36.93  Aligned_cols=59  Identities=17%  Similarity=0.067  Sum_probs=38.4

Q ss_pred             HHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           49 SLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        49 ~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+.+.++++ |++++.++.++++...+....|+..+..          .++..++.+|.||.|+|.-.+.
T Consensus       181 ~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~----------~g~~~~i~~D~vi~a~G~~~~~  240 (300)
T TIGR01292       181 ILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTV----------TGEEEELKVDGVFIAIGHEPNT  240 (300)
T ss_pred             HHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecC----------CCceEEEEccEEEEeeCCCCCh
Confidence            344556666 9999999999999765432234432210          0123479999999999965543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=86.49  E-value=0.94  Score=41.47  Aligned_cols=48  Identities=19%  Similarity=0.118  Sum_probs=30.7

Q ss_pred             HHHCCcEEEcCceeEEEEEeCC----eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGN----CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~----~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      |++..-.+.++.+|++|+..++    .|.|++.+.           .+...++.|++||+|+|
T Consensus       105 a~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~-----------~g~~~~~~ar~vVla~G  156 (341)
T PF13434_consen  105 AEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS-----------DGDGETYRARNVVLATG  156 (341)
T ss_dssp             HCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEET-----------TS-EEEEEESEEEE---
T ss_pred             HHhCCCceEECCEEEEEEEecCCCccEEEEEEeec-----------CCCeeEEEeCeEEECcC
Confidence            3444554777899999987643    488888421           01134899999999999

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=86.49  E-value=2.6  Score=39.86  Aligned_cols=59  Identities=10%  Similarity=0.144  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      .+...+.+.++++|++++.+++|++++.  .  .|++++|.               ++.+|.|++|+|.-.+ .+++..
T Consensus       190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~---------------~~~~D~vl~a~G~~pn~~~l~~~  249 (438)
T PRK13512        190 DMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGK---------------VEHYDMIIEGVGTHPNSKFIESS  249 (438)
T ss_pred             HHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCC---------------EEEeCEEEECcCCCcChHHHHhc
Confidence            4556677778889999999999998853  2  35555562               7999999999998654 344444

>PRK02106 choline dehydrogenase; Validated

Probab=86.04  E-value=2.2  Score=41.66  Aligned_cols=62  Identities=19%  Similarity=0.097  Sum_probs=41.6

Q ss_pred             HHHHHH-HCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-chHHHHHh
Q 023079           50 LVGEAE-NHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKRF  122 (287)
Q Consensus        50 l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~-s~~l~~~~  122 (287)
                      ++..+. +.+++++.++.|+.|..+++++ .|+..+..           ++...+.|+.||+|+|++ +++|+...
T Consensus       206 ~l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~-----------~~~~~~~ak~VILaaGai~TP~LLl~S  270 (560)
T PRK02106        206 YLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGG-----------GRETARARREVILSAGAINSPQLLQLS  270 (560)
T ss_pred             hhccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCC-----------cEEEEEeeeeEEEccCCCCCHHHHhhc
Confidence            333343 4579999999999998876654 35543321           112357899999999986 45666544

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=85.87  E-value=1.3  Score=41.14  Aligned_cols=48  Identities=10%  Similarity=0.072  Sum_probs=38.3

Q ss_pred             CCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           57 HGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        57 ~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..+.++..++|.+++.++++ +.+.+...+          +++.++++.|.||+|||-.
T Consensus       291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~----------~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHE----------TGELETVETDAVILATGYR  339 (436)
T ss_pred             CCeeeccccceeeeecCCCceEEEEEeecc----------CCCceEEEeeEEEEecccc
Confidence            46889999999999999865 776654442          3456789999999999976

>PRK10262 thioredoxin reductase; Provisional

Probab=85.86  E-value=2.5  Score=37.97  Aligned_cols=64  Identities=16%  Similarity=0.109  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      +...+.+.++++|++++.++.++++..+++++ .|+..++..         .++..++.+|.||+|+|.-.+.-
T Consensus       187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~---------~~~~~~i~~D~vv~a~G~~p~~~  251 (321)
T PRK10262        187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESLDVAGLFVAIGHSPNTA  251 (321)
T ss_pred             HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCC---------CCeEEEEECCEEEEEeCCccChh
Confidence            45566666778899999999999997654333 344433210         01123799999999999766553

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=85.74  E-value=1.6  Score=44.57  Aligned_cols=51  Identities=12%  Similarity=0.141  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++.+|++.   .  .++.+++|+.|...+++|.|. .+|.               +++||+||+|.-...
T Consensus       437 ~~Li~aLa~~---L--~I~ln~~V~~I~~~~dgV~V~-~~G~---------------~~~AD~VIvTvPl~v  487 (808)
T PLN02328        437 DTFVRELAKD---L--PIFYERTVESIRYGVDGVIVY-AGGQ---------------EFHGDMVLCTVPLGV  487 (808)
T ss_pred             HHHHHHHHhh---C--CcccCCeeEEEEEcCCeEEEE-eCCe---------------EEEcCEEEECCCHHH
Confidence            3455555432   2  378899999999988888874 4452               799999999987654

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=85.63  E-value=2.3  Score=40.20  Aligned_cols=55  Identities=27%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeC-Ce-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+-+.+....+++|++|..++.+.+++... +. ..|.+.+|.               ++.||.||++.|+-
T Consensus       256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~---------------~l~adlvv~GiG~~  312 (478)
T KOG1336|consen  256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK---------------TLEADLVVVGIGIK  312 (478)
T ss_pred             HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCC---------------EeccCeEEEeeccc
Confidence            344556667789999999999999998764 34 458999984               89999999999974

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=85.36  E-value=42  Score=33.48  Aligned_cols=73  Identities=14%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             cHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeC---CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEG---NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~---~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +=.++-..|.+.+.+.|+  ++..+++|++++.++   +.+.|+..+..+       ...+++.+++||+||=|=|++|.
T Consensus       139 ~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~-------~~~g~~~tv~A~~lVGaDGa~S~  211 (634)
T PRK08294        139 NQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG-------EHEGEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             CHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC-------CCCCceEEEEeCEEEECCCCchH
Confidence            334566677777777764  778899999998754   236665542100       00112348999999999999874


Q ss_pred             HHHHHh
Q 023079          117 ALAKRF  122 (287)
Q Consensus       117 ~l~~~~  122 (287)
                       +-+.+
T Consensus       212 -VR~~l  216 (634)
T PRK08294        212 -VRKAI  216 (634)
T ss_pred             -HHHhc
Confidence             44545

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=84.95  E-value=4  Score=42.40  Aligned_cols=61  Identities=13%  Similarity=0.057  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHC----CcEEEcCceeEEEEEeCCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           43 SHSLMLSLVGEAENH----GTTFSNNTSVIGGHLEGNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        43 p~~l~~~l~~~a~~~----Gv~~~~~~~V~~i~~~~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ...++..|.+.+.++    ++++.++..++++..+++++ .|..   .+|             +.+.|.|+.||+|||.+
T Consensus       138 G~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~  204 (897)
T PRK13800        138 GKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNTRTG-------------EFVTVGAKAVILATGPC  204 (897)
T ss_pred             chhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEecCCC-------------cEEEEECCEEEECCCcc
Confidence            345666777766544    67888888877887666654 3432   334             24579999999999997


Q ss_pred             ch
Q 023079          115 AP  116 (287)
Q Consensus       115 s~  116 (287)
                      +.
T Consensus       205 g~  206 (897)
T PRK13800        205 GR  206 (897)
T ss_pred             cc
Confidence            64

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=84.53  E-value=1.5  Score=36.13  Aligned_cols=51  Identities=18%  Similarity=0.232  Sum_probs=37.2

Q ss_pred             HHHHHHHHCCcEEEcCceeEEEEEeCCeE-----EE---EecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           49 SLVGEAENHGTTFSNNTSVIGGHLEGNCM-----NV---YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-----~V---~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+.+.+...+++++.+++|.++......+     .+   .+.++               .++.+|+||+|+|..
T Consensus        63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~d~lviAtG~~  121 (201)
T PF07992_consen   63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDG---------------REIKYDYLVIATGSR  121 (201)
T ss_dssp             HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTE---------------EEEEEEEEEEESTEE
T ss_pred             ccccccccceEEEeeccccccccccccccccCcccceeeccCCc---------------eEecCCeeeecCccc
Confidence            44555567899998889999998877632     22   22222               389999999999965

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=84.01  E-value=5.5  Score=37.73  Aligned_cols=59  Identities=10%  Similarity=0.016  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+..+++ ++++.+++|.+++..++ .+.++..++.             ..++++|.||+|+|.-.+
T Consensus       210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~-------------~~~i~~D~vi~a~G~~p~  269 (460)
T PRK06292        210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGK-------------TETIEADYVLVATGRRPN  269 (460)
T ss_pred             HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCc-------------eEEEEeCEEEEccCCccC
Confidence            34566677777888 99999999999987654 4555433331             126999999999997433

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=83.62  E-value=2.7  Score=38.11  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=43.7

Q ss_pred             HHHHHHHHH----HHHC--CcEEEcCceeEEEEEeCCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           45 SLMLSLVGE----AENH--GTTFSNNTSVIGGHLEGNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        45 ~l~~~l~~~----a~~~--Gv~~~~~~~V~~i~~~~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .++.+|...    +..+  -++|..+++|++|.++++++. |+  ..+|             ....+.++.||+|+|.++
T Consensus       140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sg-------------ek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  140 EIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASG-------------EKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCC-------------CccceecCceEEecCCcC
Confidence            445555544    3333  378999999999998877663 43  2333             234789999999999887


Q ss_pred             h---HHHHHh
Q 023079          116 P---ALAKRF  122 (287)
Q Consensus       116 ~---~l~~~~  122 (287)
                      -   .+++..
T Consensus       207 ysd~~lLKey  216 (477)
T KOG2404|consen  207 YSDKELLKEY  216 (477)
T ss_pred             cChHHHHHHh
Confidence            5   355544

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=83.45  E-value=4.5  Score=38.65  Aligned_cols=67  Identities=24%  Similarity=0.232  Sum_probs=43.0

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec-----CCcccccCCCCCCCCCceeEecCEEEEcCCCCch--HHHHH
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-----ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP--ALAKR  121 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~-----~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~--~l~~~  121 (287)
                      ..+.+++.|++|++++.++++..+++++. |+..     +|      +.....+.+.++.+|.||+|+|.-.+  .+++.
T Consensus       335 ~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g------~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~  408 (471)
T PRK12810        335 EVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEG------DFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ  408 (471)
T ss_pred             HHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCC------CccccCCceEEEECCEEEECcCcCCCchhhccc
Confidence            34567788999999999999976555553 4321     22      00111234568999999999996653  35443


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       409 ~  409 (471)
T PRK12810        409 F  409 (471)
T ss_pred             c
Confidence            3

>TIGR02462 pyranose_ox pyranose oxidase

Probab=83.09  E-value=2.8  Score=40.87  Aligned_cols=54  Identities=11%  Similarity=0.066  Sum_probs=36.7

Q ss_pred             HCCcEEEcCceeEEEEEeC---CeEE---EEec-CCcccccCCCCCCCCCceeEecCEEEEcCC-CCchHHHHHh
Q 023079           56 NHGTTFSNNTSVIGGHLEG---NCMN---VYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAG-LSAPALAKRF  122 (287)
Q Consensus        56 ~~Gv~~~~~~~V~~i~~~~---~~~~---V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG-~~s~~l~~~~  122 (287)
                      ...++++.++.|+.|..+.   +++.   +.+. +|             +.++++|+.||+||| ..+.+|+-..
T Consensus       226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g-------------~~~~v~A~~vVLAagaIetpRLLL~S  287 (544)
T TIGR02462       226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSG-------------DRFEIKADVYVLACGAVHNPQILVNS  287 (544)
T ss_pred             CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCC-------------cEEEEECCEEEEccCchhhHHHHHhC
Confidence            3359999999999998753   2342   3332 34             246799999999998 4555665443

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=82.59  E-value=4.1  Score=38.86  Aligned_cols=50  Identities=8%  Similarity=-0.036  Sum_probs=34.2

Q ss_pred             HHHHHCCcEEEcCceeEEEEEe-----CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           52 GEAENHGTTFSNNTSVIGGHLE-----GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        52 ~~a~~~Gv~~~~~~~V~~i~~~-----~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+++.|++++.+ .++.+...     ++.+.|.+.+|.             ..++++|+||+|+|...
T Consensus       100 ~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~-------------~~~~~~d~lViATGs~p  154 (472)
T PRK05976        100 ALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGE-------------NEMIIPENLLIATGSRP  154 (472)
T ss_pred             HHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCc-------------eEEEEcCEEEEeCCCCC
Confidence            3456679999876 45445432     236778877662             12799999999999854

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=82.49  E-value=1.4  Score=42.53  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=53.1

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCC-e-EEEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGN-C-MNVYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~-~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      |++.+.+ ++|=..+-..|.+..++. +..+++ ..|.++..+++ . +.|.|.+|.               +|.|+.||
T Consensus        89 AVra~Ra-QaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~---------------~~~a~aVV  151 (621)
T COG0445          89 AVRAPRA-QADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGP---------------EFHAKAVV  151 (621)
T ss_pred             hhcchhh-hhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCC---------------eeecCEEE
Confidence            4454443 888888888888888765 788876 46778877655 3 469999994               89999999


Q ss_pred             EcCCCCchH
Q 023079          109 NSAGLSAPA  117 (287)
Q Consensus       109 ~aaG~~s~~  117 (287)
                      +++|-+...
T Consensus       152 lTTGTFL~G  160 (621)
T COG0445         152 LTTGTFLRG  160 (621)
T ss_pred             Eeecccccc
Confidence            999987654

>PLN02976 amine oxidase

Probab=82.40  E-value=3  Score=45.17  Aligned_cols=42  Identities=14%  Similarity=0.091  Sum_probs=34.3

Q ss_pred             cEEEcCceeEEEEEe----------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           59 TTFSNNTSVIGGHLE----------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        59 v~~~~~~~V~~i~~~----------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..|+++++|+.|...          +++|.|+|.+|.               +|+||+||+|.-...
T Consensus       946 L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGe---------------tftADaVIVTVPLGV  997 (1713)
T PLN02976        946 LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGS---------------EFLGDAVLITVPLGC  997 (1713)
T ss_pred             CCeecCCeEEEEEecCCcccccccCCCcEEEEECCCC---------------EEEeceEEEeCCHHH
Confidence            358899999999884          357889998883               799999999987643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=81.97  E-value=4  Score=38.61  Aligned_cols=49  Identities=14%  Similarity=0.011  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ...+.+.+++.|++++.+ ++..+..  +.+.|.+ +|.               .+++|+||+|+|..
T Consensus        93 ~~~~~~~l~~~gV~~~~g-~~~~v~~--~~v~v~~-~g~---------------~~~~d~lIiATGs~  141 (446)
T TIGR01424        93 SGLYKRLLANAGVELLEG-RARLVGP--NTVEVLQ-DGT---------------TYTAKKILIAVGGR  141 (446)
T ss_pred             HHHHHHHHHhCCcEEEEE-EEEEecC--CEEEEec-CCe---------------EEEcCEEEEecCCc
Confidence            334445567789999865 5655532  3455543 341               79999999999975

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=81.63  E-value=1.6  Score=40.82  Aligned_cols=68  Identities=15%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      +|..-.|.+++.....-+.+.+.+.+ ++|.+ .+|++|+.++.+  |++.++.               .|..|.+|+|.
T Consensus        46 L~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~ID~~~k~--V~~~~~~---------------~i~YD~LVval  107 (405)
T COG1252          46 LYEVATGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDIDRDAKK--VTLADLG---------------EISYDYLVVAL  107 (405)
T ss_pred             hhhhhcCCCChhheeccHHHHhcccCceEEEE-EEEEEEcccCCE--EEeCCCc---------------cccccEEEEec
Confidence            45566778888888888888888555 99986 589999987765  5555531               79999999999


Q ss_pred             CCCchHH
Q 023079          112 GLSAPAL  118 (287)
Q Consensus       112 G~~s~~l  118 (287)
                      |+-....
T Consensus       108 Gs~~~~f  114 (405)
T COG1252         108 GSETNYF  114 (405)
T ss_pred             CCcCCcC
Confidence            9876654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=81.47  E-value=4.7  Score=38.55  Aligned_cols=45  Identities=20%  Similarity=0.099  Sum_probs=31.0

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +++.|++++.++ +..  .+.+.+.|++.+|.             ..++++|+||+|+|+.
T Consensus       103 ~~~~gV~~~~g~-a~~--~~~~~v~v~~~~g~-------------~~~~~~d~lViATGs~  147 (471)
T PRK06467        103 AKGRKVTVVNGL-GKF--TGGNTLEVTGEDGK-------------TTVIEFDNAIIAAGSR  147 (471)
T ss_pred             HHhCCCEEEEEE-EEE--ccCCEEEEecCCCc-------------eEEEEcCEEEEeCCCC
Confidence            466799998764 322  23456777766551             1379999999999974

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=81.24  E-value=64  Score=33.01  Aligned_cols=50  Identities=22%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ++=..+...|.+.+.+.|++++++++|+++..           -                .+++|.||.|.|.+|.-
T Consensus        94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-----------~----------------~~~~D~VVgADG~~S~v  143 (765)
T PRK08255         94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA-----------L----------------AADADLVIASDGLNSRI  143 (765)
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-----------h----------------hcCCCEEEEcCCCCHHH
Confidence            55678889999999999999999998866521           1                35799999999998753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=81.15  E-value=5.2  Score=38.73  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             HHHHHHH-CCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           50 LVGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        50 l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +.+.+++ +|++++.++.|+++..+++++. |++.++.+          ++..++.+|.||+|+|.-.+
T Consensus       393 l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~----------~~~~~i~~D~vi~a~G~~Pn  451 (515)
T TIGR03140       393 LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNS----------GEEKQLDLDGVFVQIGLVPN  451 (515)
T ss_pred             HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCC----------CcEEEEEcCEEEEEeCCcCC
Confidence            3444554 6999999999999977655543 65543311          11247999999999997654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=80.61  E-value=9.9  Score=38.08  Aligned_cols=70  Identities=7%  Similarity=-0.139  Sum_probs=39.8

Q ss_pred             HHHHHHHH-HHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           47 MLSLVGEA-ENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        47 ~~~l~~~a-~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...+.+.. +++|++++.++.|.+++..++.  +.|++.++..++.........+..++++|.|++|+|.-.+
T Consensus       356 s~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn  428 (659)
T PTZ00153        356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN  428 (659)
T ss_pred             HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence            33344443 5689999999999999875432  5554332100000000000111236999999999997644

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=80.42  E-value=3.4  Score=39.43  Aligned_cols=65  Identities=17%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      -...++.+|.+.+.+ .++++++++.+.++..+++ .+ .|.+.+..+           +...+.|+.||+|+|....-
T Consensus       131 TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~-----------~~~~~~a~~vVLATGG~g~l  198 (518)
T COG0029         131 TGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNG-----------ELGTFRAKAVVLATGGLGGL  198 (518)
T ss_pred             ccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCC-----------eEEEEecCeEEEecCCCccc
Confidence            346788899988887 5999999999999988877 55 566543310           13489999999999986543

>PLN02507 glutathione reductase

Probab=80.38  E-value=6.3  Score=38.02  Aligned_cols=47  Identities=17%  Similarity=0.089  Sum_probs=32.3

Q ss_pred             HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+.+.|++++.+ ++..+  ..+.+.|++.+|.             +.++++|+||+|+|+..
T Consensus       133 ~l~~~gV~~i~g-~a~~v--d~~~v~V~~~~g~-------------~~~~~~d~LIIATGs~p  179 (499)
T PLN02507        133 LLANAGVKLYEG-EGKIV--GPNEVEVTQLDGT-------------KLRYTAKHILIATGSRA  179 (499)
T ss_pred             HHHhCCcEEEEE-EEEEe--cCCEEEEEeCCCc-------------EEEEEcCEEEEecCCCC
Confidence            345578988865 44433  3356788877762             23589999999999743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
3dme_A	369	Crystal Structure Of Conserved Exported Protein Fro		6e-67

>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From Bordetella Pertussis. Northeast Structural Genomics Target Ber141 Length = 369

Iteration: 1
 Score =  250 bits (638), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/284 (46%), Positives = 177/284 (62%), Gaps = 24/284 (8%)
Query: 2   KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
           +R  ANGV  L+ ++G  A ++EP L C  AL+SP++GIVDSH+LML+  G+AE+ G   
Sbjct: 108 RRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQL 167
Query: 62  SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR 121
             +T +I G +          E     ++ G  P+    TL  ++++N+AGL AP LA+R
Sbjct: 168 VFHTPLIAGRVR--------PEGGFELDFGGAEPM----TLSCRVLINAAGLHAPGLARR 215
Query: 122 FIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPD 181
             G+    IPP Y  +G YF+LA    APF  LIYP+P+  GLGVH+TLDL GQ KFGPD
Sbjct: 216 IEGIPRDSIPPEYLCKGSYFTLAGR--APFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPD 273
Query: 182 VEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR 241
            EWI             DY+++  RA+ FY  +R Y+P L DG+L P Y GIRPK+SGP 
Sbjct: 274 TEWI----------ATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPH 323
Query: 242 QSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 285
           +   DF I G  +HGV GLVNL+GIESPGLT+S+AIAE   A+ 
Sbjct: 324 EPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARL 367

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
3dme_A	369	Conserved exported protein; structural genomics, P	1e-121
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	2e-09
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	4e-07
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	9e-07
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	5e-06
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	7e-05
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	6e-04

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score =  350 bits (901), Expect = e-121
 Identities = 129/284 (45%), Positives = 172/284 (60%), Gaps = 24/284 (8%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTT 60
            +R  ANGV  L+ ++G  A ++EP L C  AL+SP++GIVDSH+LML+  G+AE+ G  
Sbjct: 107 ARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQ 166

Query: 61  FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120
              +T +I G +                           +TL  ++++N+AGL AP LA+
Sbjct: 167 LVFHTPLIAGRVRPEGGFELDFGGAE------------PMTLSCRVLINAAGLHAPGLAR 214

Query: 121 RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP 180
           R  G+    IPP Y  +G YF+LA    APF  LIYP+P+  GLGVH+TLDL GQ KFGP
Sbjct: 215 RIEGIPRDSIPPEYLCKGSYFTLA--GRAPFSRLIYPVPQHAGLGVHLTLDLGGQAKFGP 272

Query: 181 DVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP 240
           D EWI   D          Y+++  RA+ FY  +R Y+P L DG+L P Y GIRPK+SGP
Sbjct: 273 DTEWIATED----------YTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGP 322

Query: 241 RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 284
            +   DF I G  +HGV GLVNL+GIESPGLT+S+AIAE   A+
Sbjct: 323 HEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLAR 366

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 43/287 (14%), Positives = 82/287 (28%), Gaps = 46/287 (16%)

Query: 1   MKRGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENH 57
            + G A     +R+L+  +A  + P L+      A   P    +D+ +L    +     +
Sbjct: 109 YESGKALVP-QMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIRRN 167

Query: 58  GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117
                 N   +          V                     +    ++VN+AG    A
Sbjct: 168 QGQVLCNHEALEIRRVDGAWEVRCDAG----------------SYRAAVLVNAAGAWCDA 211

Query: 118 LAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIK 177
           +A    G+  + + P    R   F  A           +P+        ++  D    + 
Sbjct: 212 IAGL-AGVRPLGLQPK---RRSAFIFA--PPPGIDCHDWPMLVSLDESFYLKPDAGMLLG 265

Query: 178 FGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKL 237
              + + ++  D         D +      E            L     + ++AG+R   
Sbjct: 266 SPANADPVEAHDVQPEQ---LDIATGMYLIEEA--------TTLTIRRPEHTWAGLRSF- 313

Query: 238 SGPRQSP-IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA 283
                    D V  G       G   +      G+ +S A+ E  AA
Sbjct: 314 -----VADGDLVA-GYAA-NAEGFFWVAAQGGYGIQTSAAMGEASAA 353

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 32/226 (14%), Positives = 61/226 (26%), Gaps = 38/226 (16%)

Query: 10  HGL--RMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNN 64
             +    L+  +  +           +  L P  G +D    + +L   A+  G T    
Sbjct: 114 LSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAG 173

Query: 65  TSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG 124
            +V     + + ++V                     T     VV + G     L +   G
Sbjct: 174 ETVTELVPDADGVSVTTDRG----------------TYRAGKVVLACGPYTNDLLEPL-G 216

Query: 125 LDNVFIPPAYYARGCYFSLANTKVAP----FKHLIYPIPEDGGL--GVHVTLDLDGQ-IK 177
                            +            +     P P+D  L  G        G+ ++
Sbjct: 217 AR----LAYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVR 272

Query: 178 FGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRD 223
            GPD E      D L   +      +  + +R    +R + P +  
Sbjct: 273 CGPDFEV-----DPLDHPSAATGVADRRQMDRLSGWLRDHLPTVDP 313

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 37/278 (13%), Positives = 82/278 (29%), Gaps = 58/278 (20%)

Query: 12  LRMLEGFEAMKMEPEL--QCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIG 69
           +      E ++ EP        A        V+ + +  + V  A+  G     +T V+ 
Sbjct: 130 VSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLH 189

Query: 70  GHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVF 129
              +G  + +                      +    VV ++G+ +    K+  GL+   
Sbjct: 190 VERDGEALFIKTPSG----------------DVWANHVVVASGVWSGMFFKQL-GLN--- 229

Query: 130 IPPAYYARGCYFSLANTKVAPFKHLIYP-----IPEDGGLGVHVTLDLDGQIKFGPDVEW 184
                  +G   S+ N    P    +Y      +P              G++  G  ++ 
Sbjct: 230 -NAFLPVKGECLSVWNDD-IPLTKTLYHDHCYIVPRK-----------SGRLVVGATMKP 276

Query: 185 IDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSP 244
            D           +  + +    E    + +   P +++  +   +AG+RP        P
Sbjct: 277 GD-----------WSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGT--KDGKP 323

Query: 245 IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA 282
               I          ++   G    G+  + A    ++
Sbjct: 324 Y---I--GRHPEDSRILFAAGHFRNGILLAPATGALIS 356

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 41/281 (14%), Positives = 76/281 (27%), Gaps = 47/281 (16%)

Query: 10  HGL--RMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNN 64
             L    L+    M   PE++       L    SG + S   + + +  A+  G     N
Sbjct: 110 WQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFN 169

Query: 65  TSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG 124
             V     + + + +  ++                     K  +  AG     L      
Sbjct: 170 CPVTAIRHDDDGVTIETADG----------------EYQAKKAIVCAGTWVKDLLPEL-- 211

Query: 125 LDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEW 184
              V      +    ++          K   +      G   +     +  +K G     
Sbjct: 212 --PVQPVRKVF---AWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGG 266

Query: 185 --IDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQ 242
             I   D+      R  ++   +     +P +R   P +  G      A           
Sbjct: 267 QVIHSADE------RVPFAEVVSDGSEAFPFLRNVLPGI--GCCLYGAACTYDN------ 312

Query: 243 SP-IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA 282
           SP  DF+I  D   G    + + G+   G   +  + E  A
Sbjct: 313 SPDEDFII--DTLPGHDNTLLITGLSGHGFKFASVLGEIAA 351

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 42/265 (15%), Positives = 77/265 (29%), Gaps = 35/265 (13%)

Query: 32  ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWD 91
           A+L  ++G +D+  ++      A   G  F     V+G  L+         E    +   
Sbjct: 169 AVLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEAR 228

Query: 92  --GVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA 149
                        + + +V +AG+ +  L     G+D      +   +   F +  +   
Sbjct: 229 ASAAVLSDGTRVEVGEKLVVAAGVWSNRLLNPL-GIDT----FSRPKKRMVFRV--SAST 281

Query: 150 PFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVE----WIDGIDDT-LSFLNRFDYSV-N 203
                I    +  G G    + L  ++   P       W+   D+    F    D     
Sbjct: 282 EGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEE 341

Query: 204 ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDF------VIQGDDTHGV 257
              +    P +  Y P  +D      +AG             D       V+        
Sbjct: 342 HYYSLAILPILSLYLPQFQDAYPSGGWAG-----------HYDISFDANPVV---FEPWE 387

Query: 258 PGLVNLFGIESPGLTSSMAIAEYVA 282
            G+V   G    G+  S +I    A
Sbjct: 388 SGIVVAAGTSGSGIMKSDSIGRVAA 412

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 45/283 (15%)

Query: 10  HGL--RMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNN 64
           H L   +LEG E  K  P +       A+  P SG++ S + + +    AE  G     +
Sbjct: 111 HSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTH 170

Query: 65  TSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG 124
           T V    +  + + +  +                  +     ++ S G     L  +   
Sbjct: 171 TRVEDFDISPDSVKIETANG----------------SYTADKLIVSMGAWNSKLLSKL-N 213

Query: 125 LDNVFIPPAYYARG--CYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDG-QIKFGPD 181
           LD     P    R    +F    +K +        + E      +      G  +K G  
Sbjct: 214 LD----IPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYH 269

Query: 182 VEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR 241
                   DT+      ++ V           + +Y P   +G L+     +  K     
Sbjct: 270 TFGQKIDPDTI----NREFGVYPEDESNLRAFLEEYMPGA-NGELKRGAVCMYTK----- 319

Query: 242 QSP-IDFVIQGDDTH-GVPGLVNLFGIESPGLTSSMAIAEYVA 282
            +    F+I   D H     +V   G    G   S  + E ++
Sbjct: 320 -TLDEHFII---DLHPEHSNVVIAAGFSGHGFKFSSGVGEVLS 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3dme_A	369	Conserved exported protein; structural genomics, P	100.0
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	100.0
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.98
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.97
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.97
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.96
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.96
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.96
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.96
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.95
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.95
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.95
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.95
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.95
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.94
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.94
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.94
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.93
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.92
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.01
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.77
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.73
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.63
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.47
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.37
3atr_A	453	Conserved archaeal protein; saturating double bond	98.3
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.28
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.26
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.2
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.18
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.12
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.09
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.07
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.02
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.93
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.92
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.9
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.89
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.88
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.81
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.81
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.73
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.72
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.71
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.58
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.57
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.52
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.52
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.48
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.46
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.44
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.43
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.4
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.39
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.32
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.3
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.21
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.19
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.18
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.14
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.07
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.99
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.96
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.81
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.8
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.75
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.75
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.72
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.72
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.72
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	96.69
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.69
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.69
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.66
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.66
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.66
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.65
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.62
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.62
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.6
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.6
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.6
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.57
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.52
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	96.51
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.49
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.46
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.44
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.44
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.43
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.41
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.41
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.39
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.34
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.33
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.32
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.28
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	96.26
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.23
2bry_A	497	NEDD9 interacting protein with calponin homology a	96.23
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.23
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.17
4dna_A	463	Probable glutathione reductase; structural genomic	96.13
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.99
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	95.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.96
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.95
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.93
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	95.89
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	95.87
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.85
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.77
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.69
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.68
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.68
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.66
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	95.64
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.59
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.56
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	95.54
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.46
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.46
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.44
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.42
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.39
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.23
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.17
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.17
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.17
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.14
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.1
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.09
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.06
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.94
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	94.94
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.93
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.85
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	94.73
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.72
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.68
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.68
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	94.64
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.58
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.51
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.48
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.46
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.42
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	94.22
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	94.17
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	94.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	93.99
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	93.98
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.93
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	93.89
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.87
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	93.79
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.73
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.56
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	93.55
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.51
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	93.51
4fk1_A	304	Putative thioredoxin reductase; structural genomic	93.5
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	93.32
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.1
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	92.85
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.8
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.77
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.65
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	92.63
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.56
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.54
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	92.34
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	92.23
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	92.2
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	92.03
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	91.88
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	91.71
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	91.7
3r9u_A	315	Thioredoxin reductase; structural genomics, center	91.66
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.54
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	91.53
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	91.01
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	90.78
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	90.76
1ojt_A	482	Surface protein; redox-active center, glycolysis,	90.68
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	90.47
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	90.47
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	90.47
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	90.43
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.41
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	90.4
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	90.28
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	90.27
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	90.26
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	90.12
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	89.95
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	89.76
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	89.6
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	89.48
4hb9_A	412	Similarities with probable monooxygenase; flavin,	89.44
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	89.3
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	89.19
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	88.8
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	88.65
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	88.48
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	88.25
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	88.12
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	87.93
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	87.9
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	87.75
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	87.72
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	87.46
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	87.4
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	87.15
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	87.14
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	87.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	86.83
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	86.8
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	86.29
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	85.79
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	85.32
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	85.27
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	85.24
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	84.54
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	84.48
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	83.36
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	83.35
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	83.26
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	83.16
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	82.8
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	82.27
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	82.2
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	81.98
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	81.4
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	81.34
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	80.89
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	80.79
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	80.74

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=100.00  E-value=2e-35  Score=268.22  Aligned_cols=256  Identities=49%  Similarity=0.908  Sum_probs=214.5

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEec
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYIS   82 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~   82 (287)
                      .+..|+++.++++.+++.+++|.+...+++|.|.+++++|..++.+|.+.++++|++|+++++|+++..++++ +.|++.
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~  189 (369)
T 3dme_A          110 AGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFG  189 (369)
T ss_dssp             HHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEEC
T ss_pred             HHHcCCCceeecCHHHHHHhCCCceeeeeeECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEEC
Confidence            3456775589999999999999998889999999999999999999999999999999999999999988765 889888


Q ss_pred             CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCC
Q 023079           83 ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG  162 (287)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~  162 (287)
                      +|.             ..+++||+||+|+|+|+..|++++.+.+....+++++.||+++.++.+  ..+++.+|+.|...
T Consensus       190 ~g~-------------~~~~~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~i~p~rG~~~~~~~~--~~~~~~~~~~p~~~  254 (369)
T 3dme_A          190 GAE-------------PMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR--APFSRLIYPVPQHA  254 (369)
T ss_dssp             TTS-------------CEEEEEEEEEECCGGGHHHHHHTEETSCGGGSCCCEEEEEEEEECSSS--CSCSSEEEECTTCS
T ss_pred             CCc-------------eeEEEeCEEEECCCcchHHHHHHhcCCCccccceeeecceEEEEECCC--CccCceeecCCCCC
Confidence            772             237999999999999999999888223322223466699999998764  34667788888765


Q ss_pred             CceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCCC
Q 023079          163 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQ  242 (287)
Q Consensus       163 ~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~  242 (287)
                      +.++++++..+|++++|++.++.+          ..+...+.+.++.+++.+.++||.+.+.++.+.|+|+||+..++++
T Consensus       255 ~~~~~~~~~~~g~~~iG~t~e~~~----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~~~~~~~  324 (369)
T 3dme_A          255 GLGVHLTLDLGGQAKFGPDTEWIA----------TEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHE  324 (369)
T ss_dssp             SCCCCEEECTTSCEEECCCCEEES----------SCCCCCCGGGGGGHHHHHHTTCTTCCTTCCEEEEEEEEEESSCTTS
T ss_pred             CceEEEeCccCCcEEECCCccccc----------ccccccCHHHHHHHHHHHHHHCCCCChhhceecceeccccccCCCC
Confidence            667888888899999999877532          2455667888999999999999999999999999999999764445


Q ss_pred             CCCCeEE-ec-CCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          243 SPIDFVI-QG-DDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       243 ~~~~~~i-~~-~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ++++|+| |+ .+  ..+|+|+++|++|+|||++|++|++++++|.
T Consensus       325 ~d~~p~i~g~~~~--~~~~l~~~~G~~~~G~t~ap~~a~~~a~~i~  368 (369)
T 3dme_A          325 PAADFAIAGPASH--GVAGLVNLYGIESPGLTASLAIAEETLARLA  368 (369)
T ss_dssp             CCCCCEEECHHHH--CCTTEEEEECCCTTHHHHHHHHHHHHHHHHC
T ss_pred             CcCCeEEeccccc--CCCCEEEEeCCCCchHhccHHHHHHHHHHhh
Confidence            6788888 76 34  4689999999999999999999999999985

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=100.00  E-value=3.5e-33  Score=254.93  Aligned_cols=241  Identities=17%  Similarity=0.127  Sum_probs=195.4

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEE
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVY   80 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~   80 (287)
                      .+..|++ +++++++++.+++|.+.   ..+++|.|+++++||.+++.+|++.|+++|++|+++++|+++..++++|.|+
T Consensus       112 ~~~~g~~-~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~  190 (381)
T 3nyc_A          112 GKALVPQ-MRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVR  190 (381)
T ss_dssp             HHHHCTT-CEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEE
T ss_pred             HHHcCCC-cEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEE
Confidence            4567887 99999999999999986   5689999999999999999999999999999999999999999988889999


Q ss_pred             ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC-CcccCCccccceEEEEEcCCCCCCCCceeeeCC
Q 023079           81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP  159 (287)
Q Consensus        81 t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~  159 (287)
                      |++|                +++||+||+|+|+|+..|+++++ .. +++.|    .+|+++.++.+.......  ++..
T Consensus       191 t~~g----------------~i~a~~VV~A~G~~s~~l~~~~g-~~~~~~~p----~rg~~~~~~~~~~~~~~~--~p~~  247 (381)
T 3nyc_A          191 CDAG----------------SYRAAVLVNAAGAWCDAIAGLAG-VRPLGLQP----KRRSAFIFAPPPGIDCHD--WPML  247 (381)
T ss_dssp             CSSE----------------EEEESEEEECCGGGHHHHHHHHT-CCCCCCEE----EEEEEEEECCCTTCCCTT--CCEE
T ss_pred             eCCC----------------EEEcCEEEECCChhHHHHHHHhC-CCCCceee----eEEEEEEECCCcCCCcCc--cceE
Confidence            9888                89999999999999999999884 43 34455    999999886542111111  1111


Q ss_pred             CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079          160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG  239 (287)
Q Consensus       160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~  239 (287)
                      ...+.+.|++|.. |++++|++.+...         +..+...+...++.+++.+.+ +|.+...++.+.|+|+||+   
T Consensus       248 ~~~~~~~y~~p~~-g~~~ig~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~w~G~r~~---  313 (381)
T 3nyc_A          248 VSLDESFYLKPDA-GMLLGSPANADPV---------EAHDVQPEQLDIATGMYLIEE-ATTLTIRRPEHTWAGLRSF---  313 (381)
T ss_dssp             EETTSSCEEEEET-TEEEEECCCCEEC---------CSSCCCCCHHHHHHHHHHHHH-HBSCCCCCCSEEEEEEEEE---
T ss_pred             EeCCCCEEEEeCC-CcEEEeCCcCCCC---------CcccCCCChHHHHHHHHHHHh-cCCCcccceeeeeEEcccc---
Confidence            0013348899986 8999998765421         123334455567788888766 5788888999999999999   


Q ss_pred             CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                        ++|..|+||+.+  +.+|+|+++|++|+|++++|++|+++|++|+
T Consensus       314 --t~D~~p~ig~~~--~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~  356 (381)
T 3nyc_A          314 --VADGDLVAGYAA--NAEGFFWVAAQGGYGIQTSAAMGEASAALIR  356 (381)
T ss_dssp             --CTTSCCEEEECT--TSTTEEEEECCTTCTTTTHHHHHHHHHHHHT
T ss_pred             --CCCCCceecCCC--CCCCeEEEEcCCChhHhhCHHHHHHHHHHHh
Confidence              457788999987  6799999999999999999999999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.98  E-value=6.8e-31  Score=240.51  Aligned_cols=239  Identities=18%  Similarity=0.160  Sum_probs=196.4

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-E
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-V   79 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V   79 (287)
                      .++.|++ +++++++++.+++|.+.   ..+|+|.|+++++||..++.+|.+.++++|++|+++++|+++..++++|. |
T Consensus       107 ~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv  185 (382)
T 1y56_B          107 QNKFGVP-TKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGV  185 (382)
T ss_dssp             HHHTTCC-CEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEE
T ss_pred             HHhcCCC-cEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEE
Confidence            3567887 99999999999999875   57899999999999999999999999999999999999999998888887 9


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC--CcccCCccccceEEEEEcCCCCCCCC-ceee
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD--NVFIPPAYYARGCYFSLANTKVAPFK-HLIY  156 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~--~~~~p~~~~~~g~~~~~~~~~~~~~~-~~i~  156 (287)
                      +|.+|                +++||+||+|+|+|+..|.+.+ +..  +++.|    .+|+++.+++.. ...+ ..++
T Consensus       186 ~~~~g----------------~i~a~~VV~A~G~~s~~l~~~~-g~~~~~~~~~----~~g~~~~~~~~~-~~~~~~~~~  243 (382)
T 1y56_B          186 KTNKG----------------IIKTGIVVNATNAWANLINAMA-GIKTKIPIEP----YKHQAVITQPIK-RGTINPMVI  243 (382)
T ss_dssp             EETTE----------------EEECSEEEECCGGGHHHHHHHH-TCCSCCCCEE----EEEEEEEECCCS-TTSSCSEEE
T ss_pred             EECCc----------------EEECCEEEECcchhHHHHHHHc-CCCcCcCCCe----eEeEEEEEccCC-cccCCCeEE
Confidence            99877                7999999999999999998887 444  45555    899988886532 1222 3333


Q ss_pred             eCCCCCCceeEEeeecCCcEEECC-CccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccc
Q 023079          157 PIPEDGGLGVHVTLDLDGQIKFGP-DVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP  235 (287)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~l~iG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~  235 (287)
                      ..   ...+.|++|..+| +++|. +....          +.++...+.+..+.+++.+.++||.+.+.++.+.|+|+||
T Consensus       244 ~~---~~~~~y~~p~~~g-~~iG~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~g~r~  309 (382)
T 1y56_B          244 SF---KYGHAYLTQTFHG-GIIGGIGYEIG----------PTYDLTPTYEFLREVSYYFTKIIPALKNLLILRTWAGYYA  309 (382)
T ss_dssp             ES---TTTTEEEECCSSS-CCEEECSCCBS----------SCCCCCCCHHHHHHHHHHHHHHCGGGGGSEEEEEEEEEEE
T ss_pred             ec---CCCeEEEEEeCCe-EEEecCCCCCC----------CCCCCCCCHHHHHHHHHHHHHhCCCcCCCCceEEEEeccc
Confidence            21   1135889998888 98984 32221          1234455677889999999999999998899999999999


Q ss_pred             eecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          236 KLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       236 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ++     +|..|+||..+  +.+|+|+++|++|+|++++|++|++++++|+
T Consensus       310 ~t-----~d~~p~ig~~~--~~~~~~~~~G~~g~G~~~a~~~g~~la~~i~  353 (382)
T 1y56_B          310 KT-----PDSNPAIGRIE--ELNDYYIAAGFSGHGFMMAPAVGEMVAELIT  353 (382)
T ss_dssp             EC-----TTSCCEEEEES--SSBTEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cC-----CCCCcEeccCC--CCCCEEEEEecCcchHhhhHHHHHHHHHHHh
Confidence            94     56778999987  6789999999999999999999999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.97  E-value=2.9e-30  Score=236.50  Aligned_cols=244  Identities=16%  Similarity=0.165  Sum_probs=194.1

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEE
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVY   80 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~   80 (287)
                      .+..|++ .++++++++.+++|.+.   ..++++.|.+++++|.+++.+|.+.++++|++++++++|+++..+++++.|+
T Consensus       108 ~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~  186 (389)
T 2gf3_A          108 AKEHSLT-VDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIE  186 (389)
T ss_dssp             HHHTTCC-CEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEE
T ss_pred             HHHcCCC-cEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEE
Confidence            3456887 89999999999999875   5689999999999999999999999999999999999999999887788898


Q ss_pred             ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC-----CCCcee
Q 023079           81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA-----PFKHLI  155 (287)
Q Consensus        81 t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-----~~~~~i  155 (287)
                      |++|                +++||.||+|+|+|+..+++.+ +...++.|    .+|+++.++.....     ..+..+
T Consensus       187 ~~~g----------------~~~a~~vV~A~G~~~~~l~~~~-g~~~pl~~----~rg~~~~~~~~~~~~~~~~~~p~~~  245 (389)
T 2gf3_A          187 TANG----------------SYTADKLIVSMGAWNSKLLSKL-NLDIPLQP----YRQVVGFFESDESKYSNDIDFPGFM  245 (389)
T ss_dssp             ETTE----------------EEEEEEEEECCGGGHHHHGGGG-TEECCCEE----EEEEEEEECCCHHHHBGGGTCCEEE
T ss_pred             eCCC----------------EEEeCEEEEecCccHHHHhhhh-ccCCceEE----EEEEEEEEecCcccccccccCCEEE
Confidence            8777                7999999999999999998877 33444555    99999988654100     111111


Q ss_pred             eeCCCCCCceeEEeeecCC-cEEECCCccccCCcccccccccccccCC--ChhhHHHHHHHHhhhCCCCCCCCccccccc
Q 023079          156 YPIPEDGGLGVHVTLDLDG-QIKFGPDVEWIDGIDDTLSFLNRFDYSV--NANRAERFYPEIRKYYPDLRDGSLQPSYAG  232 (287)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~g-~l~iG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G  232 (287)
                      ..  .. ...+|++|..+| ++++|.+.......      ++..+...  +++..+.+++.+.++||.+.. .+.+.|+|
T Consensus       246 ~~--~~-~~~~y~~p~~~g~~~~iG~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~~~~w~g  315 (389)
T 2gf3_A          246 VE--VP-NGIYYGFPSFGGCGLKLGYHTFGQKID------PDTINREFGVYPEDESNLRAFLEEYMPGANG-ELKRGAVC  315 (389)
T ss_dssp             EE--ET-TEEEEEECBSTTCCEEEEESSCCEECC------TTTCCCCTTSSHHHHHHHHHHHHHHCGGGCS-CEEEEEEE
T ss_pred             Ee--CC-CCcEEEcCCCCCCcEEEEEcCCCCccC------cccccCccCCCHHHHHHHHHHHHHhCCCCCC-CceEEEEE
Confidence            11  11 124788898888 89998654211000      12233445  677889999999999999987 88889999


Q ss_pred             ccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          233 IRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       233 ~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +||.     ++|..|+||..+  +.+|+|+++|++|+||+++|++|++++++|.
T Consensus       316 ~r~~-----t~D~~p~ig~~~--~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~  362 (389)
T 2gf3_A          316 MYTK-----TLDEHFIIDLHP--EHSNVVIAAGFSGHGFKFSSGVGEVLSQLAL  362 (389)
T ss_dssp             EEEE-----CTTSCCEEEEET--TEEEEEEEECCTTCCGGGHHHHHHHHHHHHH
T ss_pred             Eecc-----CCCCCeEEccCC--CCCCEEEEECCccccccccHHHHHHHHHHHc
Confidence            9998     456788999876  6789999999999999999999999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.97  E-value=5.2e-30  Score=233.67  Aligned_cols=240  Identities=15%  Similarity=0.155  Sum_probs=187.5

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEE
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVY   80 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~   80 (287)
                      .+..|++ +++++++++.+++|.+.   ..+|+|.|++|++||.+++.+|.+.++++|++++++++|+++..++++|.|+
T Consensus       107 ~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~  185 (372)
T 2uzz_A          107 AEQWQLN-VEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIE  185 (372)
T ss_dssp             HHHTTCC-EEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEE
T ss_pred             HHHcCCC-cEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEE
Confidence            4567887 99999999999999864   5689999999999999999999999999999999999999999887788899


Q ss_pred             ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC----CCCceee
Q 023079           81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA----PFKHLIY  156 (287)
Q Consensus        81 t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~----~~~~~i~  156 (287)
                      |.+|                +++||+||+|+|+|+..|++     .+++.|    .+|+++.+......    .++..+.
T Consensus       186 ~~~g----------------~~~a~~vV~a~G~~s~~l~~-----~l~~~p----~rg~~~~~~~~~~~~~~~~~p~~~~  240 (372)
T 2uzz_A          186 TADG----------------EYQAKKAIVCAGTWVKDLLP-----ELPVQP----VRKVFAWYQADGRYSVKNKFPAFTG  240 (372)
T ss_dssp             ESSC----------------EEEEEEEEECCGGGGGGTST-----TCCCEE----EECCEEEECCCGGGSTTTTCCEEEE
T ss_pred             ECCC----------------eEEcCEEEEcCCccHHhhcc-----ccCceE----EEEEEEEEEeccccCccccCCEEEE
Confidence            9888                79999999999999998764     233445    89988877643110    0111111


Q ss_pred             eCCCCCCceeEEeeecCCcEEECCCcc--ccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccccc
Q 023079          157 PIPEDGGLGVHVTLDLDGQIKFGPDVE--WIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIR  234 (287)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~l~iG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r  234 (287)
                      ..+  .+...|++|..+|++++|.+..  ..+..      .+..+...+++..+.+++.+.++||.+.  ++...|+|+|
T Consensus       241 ~~~--~~~~~y~~p~~~~~~~iG~~~~g~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~P~l~--~~~~~~~g~r  310 (372)
T 2uzz_A          241 ELP--NGDQYYGFPAENDALKIGKHNGGQVIHSA------DERVPFAEVVSDGSEAFPFLRNVLPGIG--CCLYGAACTY  310 (372)
T ss_dssp             ECT--TCCEEEEECCSSSCEEEEESSCCEECCSG------GGCCCTTTSTTGGGSSHHHHHHHSCSCC--CEEEECCCEE
T ss_pred             ecC--CCCeEEecCCCCCeEEEEecCCCCccCCh------hhccCCCCCHHHHHHHHHHHHHHCCCCC--ccceeeEEee
Confidence            111  1234677787788999997642  11110      0112233345667789999999999987  6788899999


Q ss_pred             ceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          235 PKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       235 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      |.     ++|..|+||+.+  +.+|+|+++|++|+|++++|++|++++++|+
T Consensus       311 ~~-----t~d~~p~ig~~~--~~~~l~~~~G~~g~G~~~ap~~g~~la~~i~  355 (372)
T 2uzz_A          311 DN-----SPDEDFIIDTLP--GHDNTLLITGLSGHGFKFASVLGEIAADFAQ  355 (372)
T ss_dssp             EE-----CTTSCCCEEEET--TEEEEEEECCCCSCCGGGHHHHHHHHHHHHT
T ss_pred             cc-----CCCCCeEEecCC--CCCCEEEEeCCCccchhccHHHHHHHHHHHh
Confidence            98     456778999886  6789999999999999999999999999985

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.96  E-value=1e-28  Score=227.44  Aligned_cols=246  Identities=12%  Similarity=0.014  Sum_probs=190.6

Q ss_pred             hhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe
Q 023079            5 TANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI   81 (287)
Q Consensus         5 ~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t   81 (287)
                      ++.|++ .++++++++.+++|.+.   ..+|+|.|++|+++|..++.+|.+.++++|++|+++++|+++..++++|.|+|
T Consensus       112 ~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t  190 (397)
T 2oln_A          112 DKLSVR-YEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTT  190 (397)
T ss_dssp             HHTTCC-CEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEE
T ss_pred             HHcCCC-ceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEE
Confidence            456886 89999999999999874   57899999999999999999999999999999999999999998888888988


Q ss_pred             cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC-CCCceeeeCCC
Q 023079           82 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA-PFKHLIYPIPE  160 (287)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~  160 (287)
                      +++                +++||+||+|+|+|+..+.+.+ +..+++.|    .+++++.+...... ..+..+.....
T Consensus       191 ~~g----------------~i~a~~VV~A~G~~s~~l~~~~-g~~~p~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~  249 (397)
T 2oln_A          191 DRG----------------TYRAGKVVLACGPYTNDLLEPL-GARLAYSV----YEMAIAAYRQATPVTEAPFWFAFQQP  249 (397)
T ss_dssp             SSC----------------EEEEEEEEECCGGGHHHHHGGG-TCCCCEEE----EEEEEEEEEBCSCCSCCCEEEEECCC
T ss_pred             CCC----------------EEEcCEEEEcCCcChHHHhhhc-CCCCCeeE----EEEEEEEEeecCcccCCCEEEEecCC
Confidence            777                8999999999999999999887 44555555    89998888654211 11212111111


Q ss_pred             CC--CceeEEeeecCC----cEEECCCccc-cCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccc
Q 023079          161 DG--GLGVHVTLDLDG----QIKFGPDVEW-IDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGI  233 (287)
Q Consensus       161 ~~--~~~~~~~~~~~g----~l~iG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~  233 (287)
                      ..  +.+.|++|..+|    ++++|.+.+. ....      ++..+...+++..+.+.+.+.++||.+.. .+...|+|.
T Consensus       250 ~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~p~l~~-~~~~~~~g~  322 (397)
T 2oln_A          250 TPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDH------PSAATGVADRRQMDRLSGWLRDHLPTVDP-DPVRTSTCL  322 (397)
T ss_dssp             CSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSS------GGGCCSSCCHHHHHHHHHHHHHHCTTBCS-SCSEEEEEE
T ss_pred             CCcccceEEECCCCCCCCCceEEEEecCCCCCcCC------CccccCCCCHHHHHHHHHHHHHhCCCCCC-CceeEEEEE
Confidence            00  114788887665    6999966531 1000      12234456677889999999999999986 778889999


Q ss_pred             cceecCCCCCCCCeEEecCCCCC----CCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          234 RPKLSGPRQSPIDFVIQGDDTHG----VPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       234 r~~~~~~~~~~~~~~i~~~~~~~----~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      |+.+.   ++|..|+||+.+  +    .+|+|+++|  |+||+++|++|+++|++|+
T Consensus       323 ~~~p~---t~D~~p~ig~~~--~~~~~~~~l~~a~G--g~G~~~ap~~g~~la~~i~  372 (397)
T 2oln_A          323 AVLPT---DPERQFFLGTAR--DLMTHGEKLVVYGA--GWAFKFVPLFGRICADLAV  372 (397)
T ss_dssp             EEEES---STTCCCEEEEST--TTSTTGGGEEEEEE--SSCGGGHHHHHHHHHHHHH
T ss_pred             ecCCc---CCCCCeEeecCC--ccccCCCCEEEEeC--cchhhccHHHHHHHHHHHh
Confidence            88221   467889999976  5    689999999  7999999999999999985

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.96  E-value=2.8e-28  Score=222.95  Aligned_cols=229  Identities=16%  Similarity=0.217  Sum_probs=191.6

Q ss_pred             eeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCccccc
Q 023079           12 LRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRN   89 (287)
Q Consensus        12 ~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~   89 (287)
                      +++++++++.+++|.+.  ..++++.|.+++++|..++.+|.+.+++.|++++++++|+++..++++|.|+|.+|     
T Consensus       130 ~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-----  204 (382)
T 1ryi_A          130 VSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-----  204 (382)
T ss_dssp             EEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-----
T ss_pred             eEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-----
Confidence            78899999999999875  57899999999999999999999999999999999999999998888888888777     


Q ss_pred             CCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCceeEEe
Q 023079           90 WDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVT  169 (287)
Q Consensus        90 ~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  169 (287)
                                 +++||+||+|+|.|+..+++.+ +..+++.|    .+|+++.++... ..++..++.      .+.|++
T Consensus       205 -----------~~~a~~vV~A~G~~s~~l~~~~-~~~~~~~~----~~g~~~~~~~~~-~~~~~~~~~------~~~~~~  261 (382)
T 1ryi_A          205 -----------DVWANHVVVASGVWSGMFFKQL-GLNNAFLP----VKGECLSVWNDD-IPLTKTLYH------DHCYIV  261 (382)
T ss_dssp             -----------EEEEEEEEECCGGGTHHHHHHT-TCCCCCEE----EEEEEEEEECCS-SCCCSEEEE------TTEEEE
T ss_pred             -----------eEEcCEEEECCChhHHHHHHhc-CCCCceec----cceEEEEECCCC-CCccceEEc------CCEEEE
Confidence                       7999999999999999998887 44545555    899988886542 123334432      237889


Q ss_pred             eecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCCCCCCCeEE
Q 023079          170 LDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVI  249 (287)
Q Consensus       170 ~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i  249 (287)
                      |..+|++++|.+.+..           .++...+.+..+.+++.+.++||.+...++...|+|+||+.     ++..++|
T Consensus       262 p~~~g~~~vG~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~w~g~~~~t-----~d~~p~i  325 (382)
T 1ryi_A          262 PRKSGRLVVGATMKPG-----------DWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGT-----KDGKPYI  325 (382)
T ss_dssp             ECTTSEEEEECCCEET-----------CCCCSCCHHHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEEC-----SSSCCEE
T ss_pred             EcCCCeEEEeeccccc-----------CCCCCCCHHHHHHHHHHHHHhCCCcCCCceeeEEEEecccC-----CCCCcEe
Confidence            9888899999875532           23334566788999999999999998888899999999994     4667899


Q ss_pred             ecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          250 QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       250 ~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      |..+  +.+|+|+++|++|+|+++||.+|+++|++|+
T Consensus       326 g~~~--~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~  360 (382)
T 1ryi_A          326 GRHP--EDSRILFAAGHFRNGILLAPATGALISDLIM  360 (382)
T ss_dssp             EEET--TEEEEEEEECCSSCTTTTHHHHHHHHHHHHT
T ss_pred             ccCC--CcCCEEEEEcCCcchHHHhHHHHHHHHHHHh
Confidence            9876  5689999999999999999999999999985

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.96  E-value=3.5e-28  Score=223.88  Aligned_cols=238  Identities=14%  Similarity=0.159  Sum_probs=192.6

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcc--------cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQ--------CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN   75 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~--------~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~   75 (287)
                      .+..|++ +++++.+++.+++|.+.        ..+++|.|.++++||..++.+|.+.+++.|++++++++|+++..+++
T Consensus       127 ~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~  205 (405)
T 2gag_B          127 NKLNGVD-AEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGE  205 (405)
T ss_dssp             HHTBTCC-CEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSS
T ss_pred             HHhcCCC-ceEeCHHHHHhhCCCCcccccccccceeEEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCC
Confidence            3467886 99999999999999763        46899999999999999999999999999999999999999998766


Q ss_pred             e-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCce
Q 023079           76 C-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHL  154 (287)
Q Consensus        76 ~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~  154 (287)
                      + +.|+|.+|                +++||.||+|+|+|+..+.+.+ +...++.|    .+++++.+++. ...+...
T Consensus       206 ~~~~v~~~~g----------------~~~a~~vV~a~G~~s~~l~~~~-g~~~~~~~----~~~~~~~~~~~-~~~~~~~  263 (405)
T 2gag_B          206 KVTGVKTTRG----------------TIHAGKVALAGAGHSSVLAEMA-GFELPIQS----HPLQALVSELF-EPVHPTV  263 (405)
T ss_dssp             BEEEEEETTC----------------CEEEEEEEECCGGGHHHHHHHH-TCCCCEEE----EEEEEEEEEEB-CSCCCSE
T ss_pred             EEEEEEeCCc----------------eEECCEEEECCchhHHHHHHHc-CCCCCccc----cceeEEEecCC-ccccCce
Confidence            5 56888877                7999999999999999998888 45555455    88888777532 1112223


Q ss_pred             eeeCCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccccc
Q 023079          155 IYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIR  234 (287)
Q Consensus       155 i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r  234 (287)
                      ++.   . ..++|++|..+|++++|.+.+...          ..+...+.+..+.+++.+.+++|.+.+.++...|+|+|
T Consensus       264 ~~~---~-~~~~y~~p~~~g~~~ig~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~w~g~~  329 (405)
T 2gag_B          264 VMS---N-HIHVYVSQAHKGELVMGAGIDSYN----------GYGQRGAFHVIQEQMAAAVELFPIFARAHVLRTWGGIV  329 (405)
T ss_dssp             EEE---T-TTTEEEEECTTSEEEEEEEECSSC----------CCSSCCCTHHHHHHHHHHHHHCGGGGGCEECEEEEEEE
T ss_pred             EEe---C-CCcEEEEEcCCCcEEEEeccCCCC----------ccccCCCHHHHHHHHHHHHHhCCccccCCcceEEeecc
Confidence            221   1 234788998889999997654321          12334456778899999999999998888999999999


Q ss_pred             ceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          235 PKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       235 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      |+.     ++..|+||..+   .+|+|+++|++|+|++++|++|+.+|++|+
T Consensus       330 ~~t-----~d~~p~ig~~~---~~~l~~~~G~~g~G~~~a~~~g~~la~~i~  373 (405)
T 2gag_B          330 DTT-----MDASPIISKTP---IQNLYVNCGWGTGGFKGTPGAGFTLAHTIA  373 (405)
T ss_dssp             EEE-----TTSCCEEEECS---SBTEEEEECCGGGCSTTHHHHHHHHHHHHH
T ss_pred             ccC-----CCCCCEecccC---CCCEEEEecCCCchhhHHHHHHHHHHHHHh
Confidence            994     46678999875   579999999999999999999999999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.96  E-value=3e-28  Score=227.97  Aligned_cols=240  Identities=19%  Similarity=0.228  Sum_probs=188.0

Q ss_pred             chhcCCCee-----eee-----------CHHHHHhhCCCc-ccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCce
Q 023079            4 GTANGVHGL-----RML-----------EGFEAMKMEPEL-QCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTS   66 (287)
Q Consensus         4 ~~~~g~~~~-----~~L-----------~~~ei~~~~P~l-~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~   66 (287)
                      .++.|++ .     +++           +++|+.+.  .. ...++++.+.++++||.+++.+|.+.++++|++|+++++
T Consensus       127 ~~~~g~~-~~p~~~~~l~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~  203 (448)
T 3axb_A          127 AGEEGRD-YLIIPPEELERRLGMNTRVSDGEEAEVL--GVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRR  203 (448)
T ss_dssp             SCCBTTT-EEEECHHHHHHHHCCCCCCTTSSHHHHH--TCCCCCEEEEESSEEECCHHHHHHHHHHHHHHTTCEEEESCC
T ss_pred             HHhhCCC-ccccchhhhhhcccccccCCCHHHHHhc--cCCCceEEEEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCe
Confidence            3456775 6     778           88888872  22 367799999999999999999999999999999999999


Q ss_pred             eEEEEE---------------eCCeE-EEEecCCcccccCCCCCCCCCceeE--ecCEEEEcCCCCchHHHHHhCCCCCc
Q 023079           67 VIGGHL---------------EGNCM-NVYISESKNLRNWDGVSPLQPELTL--IPKLVVNSAGLSAPALAKRFIGLDNV  128 (287)
Q Consensus        67 V~~i~~---------------~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i--~a~~VV~aaG~~s~~l~~~~~~~~~~  128 (287)
                      |+++..               +++++ .|+|.+|                ++  +||+||+|+|+|+..|++++ +...+
T Consensus       204 V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g----------------~i~~~Ad~VV~AtG~~s~~l~~~~-g~~~~  266 (448)
T 3axb_A          204 VVGVELKPRVELGIEGEPLPWQEARASAAVLSDG----------------TRVEVGEKLVVAAGVWSNRLLNPL-GIDTF  266 (448)
T ss_dssp             EEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS----------------CEEEEEEEEEECCGGGHHHHHGGG-TCCCS
T ss_pred             EEEEEecccccccccccccccCCCceEEEEeCCC----------------EEeecCCEEEECCCcCHHHHHHHc-CCCCc
Confidence            999987               55554 6888887                78  99999999999999999888 45555


Q ss_pred             ccCCccccceEEEEEcCCCCCCCCcee----------eeCCCCCCceeEEeeecC-CcEEECCCccccCCcccccccccc
Q 023079          129 FIPPAYYARGCYFSLANTKVAPFKHLI----------YPIPEDGGLGVHVTLDLD-GQIKFGPDVEWIDGIDDTLSFLNR  197 (287)
Q Consensus       129 ~~p~~~~~~g~~~~~~~~~~~~~~~~i----------~~~~~~~~~~~~~~~~~~-g~l~iG~~~~~~~~~~~~~~~~~~  197 (287)
                      +.|    .+|+++.++.... .+...+          +++... ..++|++|..+ |++++|++.+..+        ++.
T Consensus       267 ~~p----~rg~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~-~~~~y~~p~~~~g~~~iG~~~~~~~--------~~~  332 (448)
T 3axb_A          267 SRP----KKRMVFRVSASTE-GLRRIMREGDLAGAGAPPLIIL-PKRVLVRPAPREGSFWVQLSDNLGR--------PFA  332 (448)
T ss_dssp             EEE----EEEEEEEEECCSH-HHHHHHHHCCTTSSSSCCEEEE-TTTEEEEEETTTTEEEEEECCCTTS--------CBC
T ss_pred             ccc----cceEEEEeCCccc-ccccccccccccccCCCceEEc-CCceEEeecCCCCeEEEecCCcccC--------Ccc
Confidence            555    9999998875411 011100          011000 13588999888 8899998775311        012


Q ss_pred             ccc--CCChhh-HHHHHHHHhhhCCCCCCCCcccccccccce-ecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhh
Q 023079          198 FDY--SVNANR-AERFYPEIRKYYPDLRDGSLQPSYAGIRPK-LSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTS  273 (287)
Q Consensus       198 ~~~--~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~  273 (287)
                      ++.  ..+.+. .+.+++.+.++||.+.+.++.+.|+|+||+ .     +|..|+||..+    +|+|+++|++|+||++
T Consensus       333 ~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~t-----~d~~p~ig~~~----~~l~~a~G~~g~G~~~  403 (448)
T 3axb_A          333 LEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDISF-----DANPVVFEPWE----SGIVVAAGTSGSGIMK  403 (448)
T ss_dssp             CCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEET-----TSSCEEECGGG----CSEEEEECCTTCCGGG
T ss_pred             cccccCCChHHHHHHHHHHHHHhCcCcccCCcccceEEEecccc-----CCCCcEeeecC----CCEEEEECCCchhHhH
Confidence            233  456677 889999999999999989999999999999 5     36678999875    7999999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 023079          274 SMAIAEYVAAKFL  286 (287)
Q Consensus       274 ap~~g~~va~~i~  286 (287)
                      +|++|++++++|+
T Consensus       404 ap~~g~~la~~i~  416 (448)
T 3axb_A          404 SDSIGRVAAAVAL  416 (448)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHc
Confidence            9999999999985

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.95  E-value=9e-28  Score=224.01  Aligned_cols=245  Identities=16%  Similarity=0.179  Sum_probs=179.5

Q ss_pred             cCCCeeeeeCHHHHHhhCCC-cc---cce--eEEcCCc-eeecHHHHHHHHHHHHHHCCcEEEcCc---eeEEEEEeCCe
Q 023079            7 NGVHGLRMLEGFEAMKMEPE-LQ---CVK--ALLSPAS-GIVDSHSLMLSLVGEAENHGTTFSNNT---SVIGGHLEGNC   76 (287)
Q Consensus         7 ~g~~~~~~L~~~ei~~~~P~-l~---~~~--al~~p~~-g~vdp~~l~~~l~~~a~~~Gv~~~~~~---~V~~i~~~~~~   76 (287)
                      .|.+-.++++++++.+++|. +.   ..+  |+|.|.+ |+++|..++.+|.+.++++|++|++++   +|+++..++++
T Consensus       117 ~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~  196 (438)
T 3dje_A          117 EDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENND  196 (438)
T ss_dssp             GCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTE
T ss_pred             ccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCe
Confidence            46652388999999999997 62   456  9999999 999999999999999999999999999   99999998888


Q ss_pred             EE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC--CCC-
Q 023079           77 MN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA--PFK-  152 (287)
Q Consensus        77 ~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~--~~~-  152 (287)
                      +. |+|.+|.               +++||+||+|+|+|+..|++ +   ..++.|    .+.+...+......  .+. 
T Consensus       197 v~gV~t~~G~---------------~i~Ad~VV~AtG~~s~~l~~-l---~~~~~p----~~~~~~~~~l~~~~~~~~~~  253 (438)
T 3dje_A          197 VKGAVTADGK---------------IWRAERTFLCAGASAGQFLD-F---KNQLRP----TAWTLVHIALKPEERALYKN  253 (438)
T ss_dssp             EEEEEETTTE---------------EEECSEEEECCGGGGGGTSC-C---TTCCEE----EEEEEEEEECCGGGHHHHTT
T ss_pred             EEEEEECCCC---------------EEECCEEEECCCCChhhhcC-c---ccceee----EEEEEEEEEcChHHhhhhcC
Confidence            87 9998883               79999999999999999876 3   223344    44333332211000  011 


Q ss_pred             ceeeeCCCCCCceeEEeeecCCc-EEECCCccccCCc----c-ccccccccc-ccCCChhhHHHHHHHHhhhCCCCCCCC
Q 023079          153 HLIYPIPEDGGLGVHVTLDLDGQ-IKFGPDVEWIDGI----D-DTLSFLNRF-DYSVNANRAERFYPEIRKYYPDLRDGS  225 (287)
Q Consensus       153 ~~i~~~~~~~~~~~~~~~~~~g~-l~iG~~~~~~~~~----~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~l~~~~  225 (287)
                      ..++   .....++|++|..+++ +++|....-....    . ...+  .+. ....+.+..+.+.+.+.++||.|.+.+
T Consensus       254 ~p~~---~~~~~~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~l~~~~~~~~P~l~~~~  328 (438)
T 3dje_A          254 IPVI---FNIERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMS--IPFEKTQIPKEAETRVRALLKETMPQLADRP  328 (438)
T ss_dssp             CCEE---EETTTEEECSCCTTTCEEEEEECCSCEECEEECTTCCEEE--CCCCCSSCBHHHHHHHHHHHHHHCGGGTTCC
T ss_pred             CCEE---EECCCceecCCCCCCCeEEEEeCCCCccCCccCCCccccc--CCcccccCCHHHHHHHHHHHHHhCcccccCC
Confidence            1111   1113457777764544 7775211000000    0 0000  011 123456678899999999999999999


Q ss_pred             cccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          226 LQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       226 i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +.+.|+|.|++     ++|..|+||..+  ..+|+|+++|++|+||+++|++|+++|++|+
T Consensus       329 ~~~~~~g~~~~-----t~D~~piig~~p--~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~  382 (438)
T 3dje_A          329 FSFARICWCAD-----TANREFLIDRHP--QYHSLVLGCGASGRGFKYLPSIGNLIVDAME  382 (438)
T ss_dssp             CSEEEEEEEEE-----CTTSCCEEEECS--SCTTEEEEECCTTCCGGGTTTHHHHHHHHHH
T ss_pred             cceeeEEEeCc-----CCCCCeEEeecC--CCCCEEEEECCCCcchhhhHHHHHHHHHHHh
Confidence            99999999998     467889999987  6799999999999999999999999999985

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.95  E-value=2.1e-26  Score=221.68  Aligned_cols=241  Identities=19%  Similarity=0.244  Sum_probs=183.6

Q ss_pred             eeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcc
Q 023079           11 GLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKN   86 (287)
Q Consensus        11 ~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~   86 (287)
                      ..++++++++.+++|.+.   ..+|++.+ ++++||.+++.+|++.|+++|++|+++++|+++..+++++ .|++.+..+
T Consensus       135 ~~~~l~~~~~~~~~P~l~~~~~~gg~~~~-dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~t  213 (561)
T 3da1_A          135 RRYMLNEKQTLEKEPLLRKENLKGGGIYV-EYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLT  213 (561)
T ss_dssp             -CEEECHHHHHHHCTTSCCTTCCEEEEEE-EEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTT
T ss_pred             CcEEECHHHHHHhCccCChhhceeEEEec-CceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCC
Confidence            378999999999999985   45777776 5699999999999999999999999999999999988774 577654211


Q ss_pred             cccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC--CcccCCccccceEEEEEcCCCCCCCCce-eeeCCCCCC
Q 023079           87 LRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD--NVFIPPAYYARGCYFSLANTKVAPFKHL-IYPIPEDGG  163 (287)
Q Consensus        87 ~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~--~~~~p~~~~~~g~~~~~~~~~~~~~~~~-i~~~~~~~~  163 (287)
                                ++..+++|+.||||+|+|+..|.++++ ..  .++.|    .||++++++.... ..+.. +++.+ +.+
T Consensus       214 ----------g~~~~i~A~~VV~AaG~~s~~l~~~~g-~~~~~~v~p----~kG~~lvl~~~~~-~~~~~~~~~~~-~dg  276 (561)
T 3da1_A          214 ----------DTTHTIYAKKVVNAAGPWVDTLREKDR-SKHGKYLKL----SKGVHLVVDQSRF-PLRQAVYFDTE-SDG  276 (561)
T ss_dssp             ----------CCEEEEEEEEEEECCGGGHHHHHHTTT-CCCSSEEEE----EEEEEEEEEGGGS-CCSSEEEECCS-SSC
T ss_pred             ----------CceEEEECCEEEECCCcchHHHHHhcC-CCCCceEEe----ccEEEEEECCccC-CCceEEEeccC-CCC
Confidence                      123479999999999999999999884 32  44455    9999999975321 22333 33432 234


Q ss_pred             ceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCC--CCCcccccccccceecCCC
Q 023079          164 LGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR--DGSLQPSYAGIRPKLSGPR  241 (287)
Q Consensus       164 ~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~--~~~i~~~~~G~r~~~~~~~  241 (287)
                      ..++++|. +|++++|+|.+....        +..+..+++++++.+++.++++||.+.  ..++...|+|+||++.+++
T Consensus       277 r~v~~iP~-~g~~~iGtT~~~~~~--------~~~~~~~t~~~i~~ll~~~~~~~P~l~~~~~~v~~~~aGlRPl~~~~~  347 (561)
T 3da1_A          277 RMIFAIPR-EGKTYIGTTDTFYDK--------DIASPRMTVEDRDYILAAANYMFPSLRLTADDVESSWAGLRPLIHEEG  347 (561)
T ss_dssp             CCEEEEEE-TTEEEECCCCEEECS--------CTTCCCCCHHHHHHHHHHHHHHCTTCCCCTTTEEEEEEEEEEEEEC--
T ss_pred             cEEEEEec-CCCEEEcCCCCccCC--------CcCCCCCCHHHHHHHHHHHHHhCCCCCCChhhEEEEeEEeccccCCCC
Confidence            55778887 889999998864321        234667788999999999999999986  8899999999999987642


Q ss_pred             CC----CC-CeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          242 QS----PI-DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       242 ~~----~~-~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ..    .+ ++++.. +    +|++.++|.   ++|+++.+|+.++|++.
T Consensus       348 ~~~~~~sR~~~i~~~-~----~gli~i~Gg---k~Tt~r~mAe~~~d~~~  389 (561)
T 3da1_A          348 KKASEISRKDEIFFS-D----SGLISIAGG---KLTGYRKMAERTVDAVA  389 (561)
T ss_dssp             ---------CCEEEC-S----SCCEEECCC---CSTTHHHHHHHHHHHHH
T ss_pred             CCccccccceEEEec-C----CCeEEEeCC---hhhhHHHHHHHHHHHHH
Confidence            11    22 344432 2    699999885   69999999999999864

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.95  E-value=2.4e-27  Score=233.48  Aligned_cols=235  Identities=15%  Similarity=0.115  Sum_probs=186.1

Q ss_pred             cCCC--eeeeeCHHHHHhhCCCcc-cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC
Q 023079            7 NGVH--GLRMLEGFEAMKMEPELQ-CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE   83 (287)
Q Consensus         7 ~g~~--~~~~L~~~ei~~~~P~l~-~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~   83 (287)
                      .|++  .+++++++++.+++| +. ..+|+|.|.+|+++|..++.+|.+.++++|++|+++++|+++..++++|.|+|.+
T Consensus       373 ~g~~~~~~~~l~~~~~~~~~~-l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~  451 (689)
T 3pvc_A          373 TQWPVEFAEAMSREQLSELAG-LDCAHDGIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQ  451 (689)
T ss_dssp             SCCCTTTCEEECHHHHHHHHS-SCCSSCEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-
T ss_pred             cCCChHHhhccCHHHHHHhcC-CCcccceEEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCC
Confidence            4554  134999999999998 65 6789999999999999999999999999999999999999999988889999987


Q ss_pred             CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC-CCCceeeeCCCCC
Q 023079           84 SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDG  162 (287)
Q Consensus        84 g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~~~  162 (287)
                      |.              .+++||.||+|+|+|+..+.+.+   .+++.|    .+|+++.+...... .++..+.      
T Consensus       452 G~--------------~~i~Ad~VVlAtG~~s~~l~~~~---~lpl~p----~rGq~~~~~~~~~~~~l~~v~~------  504 (689)
T 3pvc_A          452 SQ--------------AAKHHATVILATGHRLPEWEQTH---HLPLSA----VRGQVSHIPTTPVLSQLQQVLC------  504 (689)
T ss_dssp             CC--------------CCEEESEEEECCGGGTTCSTTTT---TSCCEE----EEEEEEEEECCTTGGGCCSEEE------
T ss_pred             Cc--------------EEEECCEEEECCCcchhcccccc---CCcccc----ccCcEEEECCCCccccCCeeEe------
Confidence            71              15899999999999999887655   234444    99999988654210 1222211      


Q ss_pred             CceeEEeeec--CCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCC-----CCCcccccccccc
Q 023079          163 GLGVHVTLDL--DGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR-----DGSLQPSYAGIRP  235 (287)
Q Consensus       163 ~~~~~~~~~~--~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~~~G~r~  235 (287)
                      . +.|++|..  +|.+++|++.+..           ..+...+.+..+.+++.+.++||.+.     +..+.+.|+|+||
T Consensus       505 ~-~~Yl~P~~~~~g~~~iGat~~~~-----------~~d~~~~~~~~~~ll~~l~~~~P~l~~~~~~~~~~~~~w~G~R~  572 (689)
T 3pvc_A          505 Y-DGYLTPVNPANQHHCIGASYQRG-----------DIATDFRLTEQQENRERLLRCLPQVSWPQQVDVSDNQARCGVRC  572 (689)
T ss_dssp             S-SSEECCCBTTTTEEEEECCCEET-----------BCCCCCCHHHHHHHHHHHHHHCTTCSGGGGCCCTTCCEEEEEEE
T ss_pred             C-CceEccccCCCCeEEEEEeccCC-----------CCCCCCCHHHHHHHHHHHHHhCCCccccccccccccceeEEEee
Confidence            1 26889987  7899999876643           23445567788899999999999987     4467889999999


Q ss_pred             eecCCCCCCCCeEEecCCC-----------------------------CCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          236 KLSGPRQSPIDFVIQGDDT-----------------------------HGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       236 ~~~~~~~~~~~~~i~~~~~-----------------------------~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      .+     +|..++||..+.                             +..+|+|+++|++|+|+++||++|+++|++|.
T Consensus       573 ~t-----~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~G~g~~Gl~~ap~~ae~lA~~i~  647 (689)
T 3pvc_A          573 AI-----RDHLPMVGAVPDYAATLAQYQDLSRRIQHGGESEVNDIAVAPVWPELFMVGGLGSRGLCSAPLVAEILAAQMF  647 (689)
T ss_dssp             EC-----TTSCCEEEEEECHHHHHHHSTTHHHHC--------CCCCCCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHT
T ss_pred             ec-----CCCCcccCcCCCHHHHHHHHHhhhccccccccccccccccCCCCCChHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            94     566779997651                             01579999999999999999999999999985

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.95  E-value=6.7e-27  Score=229.85  Aligned_cols=232  Identities=13%  Similarity=0.109  Sum_probs=186.8

Q ss_pred             cCCC--eeeeeCHHHHHhhCCCcc-cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC
Q 023079            7 NGVH--GLRMLEGFEAMKMEPELQ-CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE   83 (287)
Q Consensus         7 ~g~~--~~~~L~~~ei~~~~P~l~-~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~   83 (287)
                      .|++  .+++++++++.+++| +. ..+|++.|.+++++|..++.+|.+.++++|++|+++++|+++..++++|.|+|.+
T Consensus       378 ~g~~~~~~~~l~~~~~~~~~~-l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~  456 (676)
T 3ps9_A          378 MDLPAELAVAVEANAVEQITG-VATNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAG  456 (676)
T ss_dssp             SCCCTTTCEEECHHHHHHHHS-SCCSSCEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETT
T ss_pred             cCCcHHHhhhCCHHHHHHhhC-CCccCCcEEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECC
Confidence            3554  244999999999988 54 6789999999999999999999999999999999999999999998899999987


Q ss_pred             CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCC-CCCCceeeeCCCCC
Q 023079           84 SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKV-APFKHLIYPIPEDG  162 (287)
Q Consensus        84 g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~  162 (287)
                      |.               +++||.||+|+|+|+..+.+..   .+++.|    .+|+++.+..... ..++..+       
T Consensus       457 G~---------------~i~Ad~VVlAtG~~s~~l~~~~---~lpl~p----~rGq~~~~~~~~~~~~l~~~l-------  507 (676)
T 3ps9_A          457 DQ---------------QATHSVVVLANGHQISRFSQTS---TLPVYS----VAGQVSHIPTTPELAELKQVL-------  507 (676)
T ss_dssp             SC---------------EEEESEEEECCGGGGGCSTTTT---TCSCEE----EEEEEEEEECCTTGGGCCSEE-------
T ss_pred             CC---------------EEECCEEEECCCcchhcccccc---CCccee----ecCEEEEECCCcccccCCcee-------
Confidence            62               7999999999999999887654   234444    9999998865311 0122221       


Q ss_pred             CceeEEeeec--CCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCC-----CCCcccccccccc
Q 023079          163 GLGVHVTLDL--DGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR-----DGSLQPSYAGIRP  235 (287)
Q Consensus       163 ~~~~~~~~~~--~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~~~G~r~  235 (287)
                      ..+.|++|..  +|++++|++.+..           ..+...+.+..+++++.+.++||.+.     +..+.+.|+|+||
T Consensus       508 ~~~~Yl~P~~~~~g~~~iG~t~~~~-----------~~d~~~~~~~~~~~l~~l~~~~P~l~~~~~~d~~~~~~~~G~R~  576 (676)
T 3ps9_A          508 CYDGYLTPQNPANQHHCIGASYHRG-----------SEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRC  576 (676)
T ss_dssp             ESSSEECCCBTTTTEEEEECCCEET-----------CCCCCCCHHHHHHHHHHHHHHSTTCHHHHTCCCTTCCEEEEEEE
T ss_pred             ECCeeeccccCCCCeEEEeeccCCC-----------CCCCCCCHHHHHHHHHHHHHhCCCccccccCcccccceEEEEeC
Confidence            1126889987  7899999876642           23445567788899999999999986     3456889999999


Q ss_pred             eecCCCCCCCCeEEecCCCCC-----------------------CCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          236 KLSGPRQSPIDFVIQGDDTHG-----------------------VPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       236 ~~~~~~~~~~~~~i~~~~~~~-----------------------~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      .+     +|..|+||..+  .                       .+|+|+++|++|+||++||++|+++|++|.
T Consensus       577 ~t-----~D~lPiiG~~p--~~~~~~~~y~~l~~~~~~~~~~~~~~~l~~a~G~g~~Gl~~Ap~~ae~lA~~i~  643 (676)
T 3ps9_A          577 AT-----RDHLPMVGNVP--DYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMS  643 (676)
T ss_dssp             EC-----TTCCCEEEEEE--CHHHHHHHTTTTTSCCTTCCSCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHT
T ss_pred             cc-----CCcCCccCcCC--ChHHHHHHHHhhhccccccccCCCCCCEeeeecccccHHHHHHHHHHHHHHHHc
Confidence            94     56778999865  3                       579999999999999999999999999985

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.95  E-value=8.1e-26  Score=218.06  Aligned_cols=247  Identities=19%  Similarity=0.226  Sum_probs=182.9

Q ss_pred             hcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEe
Q 023079            6 ANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYI   81 (287)
Q Consensus         6 ~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t   81 (287)
                      ..+.+ .++|+++++.+++|.++   ..+|++.++ +++||.+++.++++.|+++|++|+++++|+++..++++ +.|++
T Consensus       149 ~~~~~-~~~l~~~e~~~~~P~l~~~~~~gg~~~~d-g~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~  226 (571)
T 2rgh_A          149 GTKYE-NYTLTPEEVLEREPFLKKEGLKGAGVYLD-FRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKA  226 (571)
T ss_dssp             SSTTC-CEEECHHHHHHHCTTSCCTTEEEEEEECC-EECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEE
T ss_pred             ccCCC-cEEECHHHHHHhCcCCchhhceEEEEecC-CeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEE
Confidence            35665 89999999999999985   567888885 78999999999999999999999999999999988776 44664


Q ss_pred             cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC---CcccCCccccceEEEEEcCCCCCCCC-ceeee
Q 023079           82 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD---NVFIPPAYYARGCYFSLANTKVAPFK-HLIYP  157 (287)
Q Consensus        82 ~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~---~~~~p~~~~~~g~~~~~~~~~~~~~~-~~i~~  157 (287)
                      .+..+          ++..+++|+.||||+|+|+..+.++.+ ..   .++.|    ++|++++++.... ..+ ..++.
T Consensus       227 ~d~~t----------g~~~~i~A~~VV~AaG~ws~~l~~~~g-~~~~~~~i~p----~rG~~l~~~~~~~-~~~~~~~~~  290 (571)
T 2rgh_A          227 RDLLT----------DEVIEIKAKLVINTSGPWVDKVRNLNF-TRPVSPKMRP----TKGIHLVVDAKKL-PVPQPTYFD  290 (571)
T ss_dssp             EETTT----------CCEEEEEBSCEEECCGGGHHHHHTTCC-SSCCCCCBCC----EEEEEEEEEGGGS-CCSSCEEEE
T ss_pred             EEcCC----------CCEEEEEcCEEEECCChhHHHHHHhhc-cCccCceeec----cceEEEEeccccC-CCCcEEEEe
Confidence            32100          012379999999999999999988763 32   33555    9999999975311 122 23333


Q ss_pred             CCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCC--CCCCCcccccccccc
Q 023079          158 IPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPD--LRDGSLQPSYAGIRP  235 (287)
Q Consensus       158 ~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~~~i~~~~~G~r~  235 (287)
                      .+...+..+|++|. +|.+++|++.+..+.        +..+...+++.++.+++.++++||.  +...++.+.|+|+||
T Consensus       291 ~~~~dgr~~~~~P~-~~~~~iG~t~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~P~~~l~~~~v~~~waG~Rp  361 (571)
T 2rgh_A          291 TGKQDGRMVFAIPR-ENKTYFGTTDTDYQG--------DFTDPKVTQEDVDYLLDVINHRYPEANITLADIEASWAGLRP  361 (571)
T ss_dssp             CSSSSSCEEEEEEE-TTEEEECCCCEECCS--------CSSSCCCCHHHHHHHHHHHHHHSTTTCCCGGGCCEEEEEEEC
T ss_pred             ccCCCCcEEEEEEc-CCeEEEcCCCcCCCC--------CcCCCCCCHHHHHHHHHHHHHhcCccCCchhceeEEeEEeee
Confidence            32122455788887 588999998764321        2335567788999999999999997  477889999999999


Q ss_pred             eecCC----CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          236 KLSGP----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       236 ~~~~~----~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +..+.    ...+++++|+..    .+|+++++|+   ++|++|.+|+.+++++.
T Consensus       362 ~~~d~~~~~~~~~r~~~i~~~----~~gl~~v~GG---k~Tt~r~~Ae~~~~~i~  409 (571)
T 2rgh_A          362 LLIGNSGSPSTISRGSSLERE----PDGLLTLSGG---KITDYRKMAEGALRLIR  409 (571)
T ss_dssp             CBCC-----------EEEEEC----TTSCEEEEEC---CGGGHHHHHHHHHHHHH
T ss_pred             ccCCCCCCcccCCCCcEEecC----CCCeEEEeCc---chhhHHHHHHHHHHHHH
Confidence            98752    112456778654    3799988774   49999999999999874

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.94  E-value=5.1e-26  Score=228.33  Aligned_cols=250  Identities=16%  Similarity=0.206  Sum_probs=191.3

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EE
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NV   79 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V   79 (287)
                      .+..|++ +++++++++.+++|.+.   ..+|+|.|.+|++||..++.+|++.++++|++|+++++|+++..+++++ .|
T Consensus       109 ~~~~G~~-~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V  187 (830)
T 1pj5_A          109 AAAWGIE-GRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGV  187 (830)
T ss_dssp             HHHHTCC-CEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEE
T ss_pred             HHHcCCC-eEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEE
Confidence            4567886 99999999999999885   5789999999999999999999999999999999999999999887776 58


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC-CCC----ce
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA-PFK----HL  154 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-~~~----~~  154 (287)
                      +|++|                +++||+||+|+|+|+..+.+++ +..+++.|    .+++++.+.+.... ...    ..
T Consensus       188 ~t~~G----------------~i~Ad~VV~AaG~~s~~l~~~~-g~~~pl~p----~~g~~~~~~~~~~~~~~~~~~~~~  246 (830)
T 1pj5_A          188 QTADG----------------VIPADIVVSCAGFWGAKIGAMI-GMAVPLLP----LAHQYVKTTPVPAQQGRNDQPNGA  246 (830)
T ss_dssp             EETTE----------------EEECSEEEECCGGGHHHHHHTT-TCCCCCEE----EEEEEEEESCCGGGTTTSCTTTCC
T ss_pred             EECCc----------------EEECCEEEECCccchHHHHHHh-CCCcccee----ceeEEEEEecCcccccccccccCC
Confidence            88888                8999999999999999998887 45655566    99999988653110 000    00


Q ss_pred             eeeCCCCCCceeEEeeecCCcEEECCCcccc--CCcccccc----cc----cccccCCChhhHHHHHHHHhhhCCCCCCC
Q 023079          155 IYPIPEDGGLGVHVTLDLDGQIKFGPDVEWI--DGIDDTLS----FL----NRFDYSVNANRAERFYPEIRKYYPDLRDG  224 (287)
Q Consensus       155 i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~--~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~P~l~~~  224 (287)
                      -.++......++|++|.. +++++|.+....  ..+.++..    ..    .+.+...+.+.++.+++.+.++||.+.+.
T Consensus       247 ~~pv~~~~~~~~y~r~~~-~~l~iG~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~  325 (830)
T 1pj5_A          247 RLPILRHQDQDLYYREHG-DRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLLPALADS  325 (830)
T ss_dssp             CSCEEEEGGGTEEEEEET-TEEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCCHHHHHHHHHHHHHHCGGGGGS
T ss_pred             CCCeEEcCCCCEEEEEeC-CeEEEeccCCCCcccCcccccccccccccccccccccCCCHHHHHHHHHHHHHhCcccccc
Confidence            011111112347788874 478888754210  00000000    00    01223456678889999999999999999


Q ss_pred             CcccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          225 SLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       225 ~i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      ++.+.|+|+||+     ++|..|+||+.+  +.+|+|+++|+   |++++|++|+++|++|.
T Consensus       326 ~i~~~w~G~r~~-----t~D~~PiIG~~p--~~~gl~va~G~---G~~~ap~~g~~la~li~  377 (830)
T 1pj5_A          326 EIEDGFNGIFSF-----TPDGGPLLGESK--ELDGFYVAEAV---WVTHSAGVAKAMAELLT  377 (830)
T ss_dssp             CEEEEEEEEEEE-----CTTSCCEEEECS--SSBTEEEEESC---CGGGHHHHHHHHHHHHH
T ss_pred             CcceEEEeeccc-----CCCCCeeeccCC--CCCCEEEEECc---hHHhhHHHHHHHHHHHh
Confidence            999999999999     457788999987  67999999996   79999999999999985

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.94  E-value=8.6e-27  Score=211.31  Aligned_cols=223  Identities=17%  Similarity=0.154  Sum_probs=172.1

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE   83 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~   83 (287)
                      .++.+.+ +++++++|+ +++|.  ..+|++.+ ++++||.+++.+|.+.|+++|++|++ ++|++++..          
T Consensus       107 ~~~~~~~-~~~l~~~e~-~~~p~--~~~~~~~~-~~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~----------  170 (351)
T 3g3e_A          107 WKDTVLG-FRKLTPREL-DMFPD--YGYGWFHT-SLILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEV----------  170 (351)
T ss_dssp             GGGTSEE-EEECCHHHH-TTCTT--CCEEEEEE-EEEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH----------
T ss_pred             HHHhCCC-ceECCHHHh-ccCCC--CceEEEec-ceEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh----------
Confidence            4456775 999999999 56785  45788888 69999999999999999999999998 888776421          


Q ss_pred             CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCC--CC
Q 023079           84 SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP--ED  161 (287)
Q Consensus        84 g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~--~~  161 (287)
                      +                .++||+||+|+|+|+..|++     ..++.|    .||+++.++++   .+++.++...  ..
T Consensus       171 ~----------------~~~a~~VV~A~G~~s~~l~~-----~~~l~p----~rg~~~~~~~~---~~~~~~~~~~~~~~  222 (351)
T 3g3e_A          171 A----------------REGADVIVNCTGVWAGALQR-----DPLLQP----GRGQIMKVDAP---WMKHFILTHDPERG  222 (351)
T ss_dssp             H----------------HTTCSEEEECCGGGGGGTSC-----CTTCEE----EEEEEEEEECT---TCCSEEEECCTTTC
T ss_pred             h----------------cCCCCEEEECCCcChHhhcC-----CCceee----cCCcEEEEeCC---CcceEEEeccccCC
Confidence            2                47899999999999998753     233444    99999998764   2344444321  11


Q ss_pred             CCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCC
Q 023079          162 GGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR  241 (287)
Q Consensus       162 ~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~  241 (287)
                      .....|++|..+ ++++|++.+..           .++...+++..+.+++.+.++||.+.+.++.+.|+|+||+.+|  
T Consensus       223 ~~~~~y~~p~~~-~~~iGg~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~t~D--  288 (351)
T 3g3e_A          223 IYNSPYIIPGTQ-TVTLGGIFQLG-----------NWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQ--  288 (351)
T ss_dssp             TTCSCEEEECSS-CEEEECCCEET-----------CCCCSCCHHHHHHHHHHHHHHCGGGGGCEEEEEEEEEEEECSS--
T ss_pred             CCceeEEEeCCC-cEEEeeeeecC-----------CCCCCCCHHHHHHHHHHHHHhCCCccCCcEeeeeEeeCCCCCC--
Confidence            123488999876 89999877642           2344567788999999999999999989999999999999432  


Q ss_pred             CCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          242 QSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       242 ~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      .|-.+++||..+  +.+|+|+++|++|+|+++||++|++++++|.
T Consensus       289 ~p~~~~~ig~~~--~~~~~~~~~G~~g~G~~~ap~~g~~la~li~  331 (351)
T 3g3e_A          289 IRLEREQLRTGP--SNTEVIHNYGHGGYGLTIHWGCALEAAKLFG  331 (351)
T ss_dssp             CEEEEEEECCSS--SCEEEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeccCCC--CCCeEEEEeCCCcchHhhhHHHHHHHHHHHH
Confidence            010113477766  5789999999999999999999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.94  E-value=1.6e-26  Score=214.07  Aligned_cols=233  Identities=16%  Similarity=0.084  Sum_probs=170.0

Q ss_pred             eeCHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeE---------EEEEeCCeE
Q 023079           14 MLEGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVI---------GGHLEGNCM   77 (287)
Q Consensus        14 ~L~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~---------~i~~~~~~~   77 (287)
                      +++.+++.+++|.+.       ..+|+|.|.++++||..++.+|.+.++++|++++++++|+         ++..++++|
T Consensus       135 ~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v  214 (405)
T 3c4n_A          135 LTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQ  214 (405)
T ss_dssp             CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-----
T ss_pred             CCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeE
Confidence            567888888887542       5689999999999999999999999999999999999999         887777778


Q ss_pred             EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH-HhCCCCCcccCCccccceEEEEEcCCCCCCCCceee
Q 023079           78 NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK-RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY  156 (287)
Q Consensus        78 ~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~-~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~  156 (287)
                      .|+|.+|                +++||+||+|+|+|+..|.+ .+ +...++.|    .+|+++.+..+. ......++
T Consensus       215 ~v~~~~g----------------~i~a~~VV~A~G~~s~~l~~~~~-g~~~~~~~----~~g~~~~~~~~~-~~~~~~~~  272 (405)
T 3c4n_A          215 IVVHETR----------------QIRAGVIIVAAGAAGPALVEQGL-GLHTRHGR----AYRQFPRLDLLS-GAQTPVLR  272 (405)
T ss_dssp             --CBCCE----------------EEEEEEEEECCGGGHHHHHHHHH-CCCCCCEE----EEEECCEECSCC-CTTCCEEE
T ss_pred             EEEECCc----------------EEECCEEEECCCccHHHHHHHhc-CCCCCccc----ceeEEEEECCCC-ccCCCeEE
Confidence            7878777                79999999999999999988 87 45544455    889988776431 12222332


Q ss_pred             eCCCCCCceeEEeeecCCcEEECCCcc--ccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCC---------
Q 023079          157 PIPEDGGLGVHVTLDLDGQIKFGPDVE--WIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGS---------  225 (287)
Q Consensus       157 ~~~~~~~~~~~~~~~~~g~l~iG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~---------  225 (287)
                            ..++|++|..+|.+++|++..  ......+... ....+...+.+.++.+.+.+ ++||.+.+..         
T Consensus       273 ------~~~~y~~p~~~g~~~~G~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~P~l~~~~~~~~r~~~~  344 (405)
T 3c4n_A          273 ------ASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGS-LTGVPTGLRRELLEDLVGLM-DAVPALAGEGLELGRSSAD  344 (405)
T ss_dssp             ------ETTEEEEEETTEEEEECCCCSCBCSSCCCCCCC-BTTBCCSSCHHHHHHHHHHT-TTCGGGGSSCBCCCSSGGG
T ss_pred             ------CCcEEEEEcCCCeEEEeccccccccCcCccccc-ccccccCCCHHHHHHHHHHH-HhCCCccccCccccccccc
Confidence                  234889998888899988743  2110000000 00011233455666776654 8999987765         


Q ss_pred             cccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          226 LQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       226 i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                      +.+.|+|+||++     +|..++||+.+    +|+|+++|++|+ ++++|++|++++++|+
T Consensus       345 i~~~w~G~r~~t-----~D~~P~ig~~~----~gl~~a~G~~g~-~~~ap~~a~~la~~i~  395 (405)
T 3c4n_A          345 VPGAWLALPGGR-----PDAPPQAEELA----PGLHLLLGGPLA-DTLGLAAAHELAQRVS  395 (405)
T ss_dssp             SCEEEEEEGGGC-----TTCCCEEEEEE----TTEEEEECCTTH-HHHHHHHHHHHHHHHH
T ss_pred             eeeEEEeecCcC-----CCCCCEecccC----CCeEEEEccCcH-HHHHHHHHHHHHHHHh
Confidence            888999999994     56778999875    799999999876 5999999999999985

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.93  E-value=2.9e-25  Score=211.03  Aligned_cols=241  Identities=15%  Similarity=0.144  Sum_probs=185.7

Q ss_pred             eeeeCHHHHHhhC--CCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec---CC
Q 023079           12 LRMLEGFEAMKME--PELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS---ES   84 (287)
Q Consensus        12 ~~~L~~~ei~~~~--P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~---~g   84 (287)
                      .++|+++++.+++  |.+.  ..+|++. .+|++||.+++.+|++.|+++|++++++++|+++..+++.|.|++.   +|
T Consensus       114 ~~~l~~~~~~~~~~~P~l~~~~~~~~~~-~~g~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G  192 (501)
T 2qcu_A          114 RTSLPGSTGLRFGANSVLKPEIKRGFEY-SDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTG  192 (501)
T ss_dssp             CSSSCCCEEEECCTTSSBCTTCCEEEEE-EEEEECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTC
T ss_pred             cEEECHHHHHHhhcCCCcchhceEEEEe-eCCEEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCC
Confidence            6788888888888  9875  4566665 5889999999999999999999999999999999988777778774   34


Q ss_pred             cccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH-hCCC-CCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCC
Q 023079           85 KNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR-FIGL-DNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG  162 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~-~~~~-~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~  162 (287)
                                   ++.+++||.||||+|+|+..+.+. ++.. ..++.|    .+|++++++.... .....+++.+  .
T Consensus       193 -------------~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~~i~p----~rG~~~~~~~~~~-~~~~~~~~~~--d  252 (501)
T 2qcu_A          193 -------------KKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRL----IKGSHIVVPRVHT-QKQAYILQNE--D  252 (501)
T ss_dssp             -------------CEEEEEESCEEECCGGGHHHHHHHHTCCCCSSCBCC----EEEEEEEEECSSS-CSCEEEEECT--T
T ss_pred             -------------CEEEEECCEEEECCChhHHHHHHHhccCCccccccc----ceeEEEEECCCCC-CceEEEeecC--C
Confidence                         234799999999999999999885 4322 244566    9999999874321 1122344422  2


Q ss_pred             CceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCC-CCCCCCcccccccccceecCC-
Q 023079          163 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP-  240 (287)
Q Consensus       163 ~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~~~G~r~~~~~~-  240 (287)
                      +..++++|..+|.+++|++.+..+.        ++.+...+++.++.+++.++++|| .+...++.+.|+|+||+..+. 
T Consensus       253 g~~~~~~P~~~g~~~iG~t~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~p~~l~~~~v~~~~aG~Rp~~~d~~  324 (501)
T 2qcu_A          253 KRIVFVIPWMDEFSIIGTTDVEYKG--------DPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDES  324 (501)
T ss_dssp             SCEEEEEEETTTEEEEECCCEECCS--------CGGGCCCCHHHHHHHHHHHHHHBSSCCCGGGCCEEEEEEECCBCCCC
T ss_pred             CCEEEEEEcCCCcEEEcCCCCCCCC--------CcCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEEEEEEeeecCCCC
Confidence            4568889988889999988764321        234556778899999999999999 899889999999999998762 


Q ss_pred             ---CCCCCCeEEe--cCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          241 ---RQSPIDFVIQ--GDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       241 ---~~~~~~~~i~--~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                         +...++++|.  ...  +.+|++.++|.   |+|++|.+|+.+++++.
T Consensus       325 p~~~~~~~~~~i~~~~~~--~~~gl~~i~Gg---~~t~~~~~Ae~~~~~~~  370 (501)
T 2qcu_A          325 DSPQAITRDYTLDIHDEN--GKAPLLSVFGG---KLTTYRKLAEHALEKLT  370 (501)
T ss_dssp             SSGGGSCCCCEEEEEEET--TEEEEEEEECC---CGGGHHHHHHHHHHHHG
T ss_pred             CccccCcCceEEEecccC--CCCCeEEEeCc---cccchHHHHHHHHHHHH
Confidence               2224577765  322  34689988875   79999999999999875

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.92  E-value=5e-25  Score=200.52  Aligned_cols=218  Identities=21%  Similarity=0.161  Sum_probs=164.4

Q ss_pred             hhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCC
Q 023079            5 TANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISES   84 (287)
Q Consensus         5 ~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g   84 (287)
                      ++.|.+ +++++++++    |.  ...|++. .++++||.+++.+|++.|+++|++|++ ++|+++...          -
T Consensus       111 ~~~g~~-~~~l~~~~~----p~--~~~g~~~-~~~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~~----------~  171 (363)
T 1c0p_A          111 KDITPN-YRPLPSSEC----PP--GAIGVTY-DTLSVHAPKYCQYLARELQKLGATFER-RTVTSLEQA----------F  171 (363)
T ss_dssp             TTTSTT-CEECCGGGS----ST--TCEEEEE-EEEECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGGT----------C
T ss_pred             HHhCCC-cEECCHHHC----CC--ceEEEEE-ecceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhhc----------C
Confidence            445665 788887766    42  2356776 889999999999999999999999998 888877431          1


Q ss_pred             cccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCc
Q 023079           85 KNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL  164 (287)
Q Consensus        85 ~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~  164 (287)
                                      + +||+||+|+|+|+..+...   ...++.|    .+|+++.++...  .+..  ++.... ..
T Consensus       172 ----------------~-~a~~VV~A~G~~s~~l~~~---~~~~~~p----~rg~~~~~~~~~--~~~~--~~~~~~-~~  222 (363)
T 1c0p_A          172 ----------------D-GADLVVNATGLGAKSIAGI---DDQAAEP----IRGQTVLVKSPC--KRCT--MDSSDP-AS  222 (363)
T ss_dssp             ----------------S-SCSEEEECCGGGGGTSBTT---CCTTEEE----EEEEEEEEECCC--CCCE--EECSCT-TC
T ss_pred             ----------------c-CCCEEEECCCcchhhccCc---ccCCccc----cCCeEEEEeCCc--ccce--EeeccC-CC
Confidence                            3 6999999999999987643   2334455    999999887642  2221  222211 13


Q ss_pred             eeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCC------CCCCcccccccccceec
Q 023079          165 GVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDL------RDGSLQPSYAGIRPKLS  238 (287)
Q Consensus       165 ~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l------~~~~i~~~~~G~r~~~~  238 (287)
                      +.|++|..+|++++|++.+..           .++...+.+..+.+++.+.++||.+      .+.++.+.|+|+||+++
T Consensus       223 ~~y~~p~~~g~~~iG~t~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~i~~~w~G~rp~t~  291 (363)
T 1c0p_A          223 PAYIIPRPGGEVICGGTYGVG-----------DWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPARR  291 (363)
T ss_dssp             CEEEEEETTTEEEEECCCEET-----------CCCCSCCHHHHHHHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEEET
T ss_pred             cEEEEEcCCCEEEEEeeeccC-----------CCCCCCCHHHHHHHHHHHHHhCccccCCcccccceEeeceEEECCCCC
Confidence            388999888999999886542           2344566788899999999999998      44788999999999954


Q ss_pred             CCCCCCCCeEEecC-C------------------CCCC--CCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079          239 GPRQSPIDFVIQGD-D------------------THGV--PGLVNLFGIESPGLTSSMAIAEYVAAKFL  286 (287)
Q Consensus       239 ~~~~~~~~~~i~~~-~------------------~~~~--~~l~~~~G~~g~G~t~ap~~g~~va~~i~  286 (287)
                           |..+++++. +                  .++.  +|+|+++|++|+||+++|++|++++++|.
T Consensus       292 -----d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~~a~G~~g~G~~~a~~~g~~~a~li~  355 (363)
T 1c0p_A          292 -----GGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDVAQLVD  355 (363)
T ss_dssp             -----TSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----CCceeEEEecccccccccCccccccccccccccccceEEEecCCCCcchheeccHHHHHHHHHH
Confidence                 556776652 0                  0134  79999999999999999999999999875

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.77  E-value=9.4e-08  Score=87.72  Aligned_cols=72  Identities=13%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             CceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           37 ASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        37 ~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ....+++..+...|.+.|++.|++++++++|+++..+++++  .|++.+|.             +.+++||.||+|+|.+
T Consensus        99 ~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~-------------~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           99 WTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGN-------------KREIEARFIIDASGYG  165 (421)
T ss_dssp             CEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSC-------------EEEEEEEEEEECCGGG
T ss_pred             ceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCC-------------EEEEEcCEEEECCCCc
Confidence            34578999999999999999999999999999999887764  56677772             2359999999999999


Q ss_pred             chHHHHHh
Q 023079          115 APALAKRF  122 (287)
Q Consensus       115 s~~l~~~~  122 (287)
                      + .+.+.+
T Consensus       166 s-~l~~~~  172 (421)
T 3nix_A          166 R-VIPRMF  172 (421)
T ss_dssp             C-HHHHHT
T ss_pred             h-hhHHhc
Confidence            8 666666

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.73  E-value=1.9e-07  Score=85.68  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=58.5

Q ss_pred             ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           30 VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        30 ~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      .++.+.+.+|   ...++.+|++.++++|++|+++++|++|..+++++. |+++.+                +++||.||
T Consensus       185 ~~~~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~----------------~~~ad~VV  245 (425)
T 3ka7_A          185 FGGTGIPEGG---CKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIADDR----------------IHDADLVI  245 (425)
T ss_dssp             HCSCEEETTS---HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE----------------EEECSEEE
T ss_pred             cCCccccCCC---HHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCE----------------EEECCEEE
Confidence            3566677776   477999999999999999999999999999888886 777633                79999999


Q ss_pred             EcCCCCchH
Q 023079          109 NSAGLSAPA  117 (287)
Q Consensus       109 ~aaG~~s~~  117 (287)
                      +|+|+|...
T Consensus       246 ~a~~~~~~~  254 (425)
T 3ka7_A          246 SNLGHAATA  254 (425)
T ss_dssp             ECSCHHHHH
T ss_pred             ECCCHHHHH
Confidence            999998654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.63  E-value=4e-07  Score=86.01  Aligned_cols=205  Identities=10%  Similarity=0.020  Sum_probs=114.3

Q ss_pred             CCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           36 PASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        36 p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +.+..+++..+...|.+.|++.|++++++ +|+++..++++  +.|++.+|.               +++||.||.|+|.
T Consensus       165 ~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~---------------~~~ad~vV~A~G~  228 (511)
T 2weu_A          165 PYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHG---------------EISGDLFVDCTGF  228 (511)
T ss_dssp             SCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSC---------------EEECSEEEECCGG
T ss_pred             CeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCC---------------EEEcCEEEECCCc
Confidence            45668999999999999999999999999 99999885444  568888772               7999999999999


Q ss_pred             CchHHHHHhCCCCCcccCCccccceEE-EEEcCCCCCCCCceeeeCCCCCCceeEEeeecCCcEEECCCccccCCccccc
Q 023079          114 SAPALAKRFIGLDNVFIPPAYYARGCY-FSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTL  192 (287)
Q Consensus       114 ~s~~l~~~~~~~~~~~~p~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~  192 (287)
                      ||..+.+.+ +......++..+....+ +.+.................+.+ -.++.|..+ +..+|....  .      
T Consensus       229 ~S~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~P~~~-~~~~g~~~~--~------  297 (511)
T 2weu_A          229 RGLLINQTL-GGRFQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAG-WMWTIPLFK-RDGNGYVYS--D------  297 (511)
T ss_dssp             GCCCCCCCT-CCCEEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTE-EEEEEECSS-EEEEEEEEC--T------
T ss_pred             chHHHHHHh-CCCCccccccCcccceEEEEeccCCCCCCCcceeceecCCC-cEEEEECCC-ceEEEEEEC--C------
Confidence            987655444 33221100011132222 22221100001110000001111 134455433 444442110  0      


Q ss_pred             ccccccccCCChhh-HHHHHHHHhhhCCCCCCCCcccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchh
Q 023079          193 SFLNRFDYSVNANR-AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGL  271 (287)
Q Consensus       193 ~~~~~~~~~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~  271 (287)
                            . ..+.+. .+.+.+.+ ...|.+.+..+...|.|.++...    .++-+++|..-     +  .+..++|.|+
T Consensus       298 ------~-~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~rv~liGDAA-----h--~~~P~~g~G~  358 (511)
T 2weu_A          298 ------E-FISPEEAERELRSTV-APGRDDLEANHIQMRIGRNERTW----INNCVAVGLSA-----A--FVEPLESTGI  358 (511)
T ss_dssp             ------T-TSCHHHHHHHHHHHH-CTTCTTSCCEEEECCCEEESCSE----ETTEEECGGGT-----E--ECCGGGCCHH
T ss_pred             ------C-CCCHHHHHHHHHHHh-CcccccccceeEEeecccccccc----CCCEEEEechh-----h--ccCccccccH
Confidence                  0 112222 23333333 33455555566677777765422    12334566543     2  2334567899


Q ss_pred             hhhHHHHHHHHHHHh
Q 023079          272 TSSMAIAEYVAAKFL  286 (287)
Q Consensus       272 t~ap~~g~~va~~i~  286 (287)
                      .++...|..+++.|.
T Consensus       359 ~~a~~da~~La~~l~  373 (511)
T 2weu_A          359 FFIQHAIEQLVKHFP  373 (511)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.47  E-value=1.1e-06  Score=80.76  Aligned_cols=71  Identities=8%  Similarity=0.029  Sum_probs=58.7

Q ss_pred             ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           30 VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        30 ~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      .++.+.|.+|   +..++.+|++.++++|++|+++++|++|..++++| |.++.+                +++||.||+
T Consensus       178 ~~g~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~~~g~----------------~~~ad~Vv~  237 (421)
T 3nrn_A          178 WGGPGLIRGG---CKAVIDELERIIMENKGKILTRKEVVEINIEEKKV-YTRDNE----------------EYSFDVAIS  237 (421)
T ss_dssp             HCSCEEETTC---HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-EETTCC----------------EEECSEEEE
T ss_pred             cCCcceecCC---HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-EEeCCc----------------EEEeCEEEE
Confidence            3566777777   68899999999999999999999999999888888 755433                899999999


Q ss_pred             cCCCCchHHHHHh
Q 023079          110 SAGLSAPALAKRF  122 (287)
Q Consensus       110 aaG~~s~~l~~~~  122 (287)
                      |+|+|..  .+++
T Consensus       238 a~~~~~~--~~ll  248 (421)
T 3nrn_A          238 NVGVRET--VKLI  248 (421)
T ss_dssp             CSCHHHH--HHHH
T ss_pred             CCCHHHH--HHhc
Confidence            9998753  3455

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.37  E-value=1.1e-06  Score=84.86  Aligned_cols=73  Identities=18%  Similarity=0.308  Sum_probs=59.9

Q ss_pred             CCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           36 PASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        36 p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +.+..++...+...|.+.|++.|++++++++|+++..+ ++.+.|++. +|.             +.+++||.||.|+|.
T Consensus       120 ~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~-------------~~~i~AdlVV~AdG~  186 (591)
T 3i3l_A          120 DHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGE-------------SVTVESDFVIDAGGS  186 (591)
T ss_dssp             SCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTE-------------EEEEEESEEEECCGG
T ss_pred             CeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCc-------------eEEEEcCEEEECCCC
Confidence            44568899999999999999999999999999999876 456778776 441             237999999999999


Q ss_pred             CchHHHHHh
Q 023079          114 SAPALAKRF  122 (287)
Q Consensus       114 ~s~~l~~~~  122 (287)
                      ++. +.+.+
T Consensus       187 ~S~-lr~~l  194 (591)
T 3i3l_A          187 GGP-ISRKL  194 (591)
T ss_dssp             GCH-HHHHH
T ss_pred             cch-hHHHc
Confidence            875 55556

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.30  E-value=2.3e-05  Score=72.74  Aligned_cols=70  Identities=19%  Similarity=0.277  Sum_probs=56.5

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..++...+...|.+.+.+.|++++.+++|+++..+++++. |++.   +|.             ..+++||.||.|+|.+
T Consensus        95 ~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~-------------~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A           95 FELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNE-------------ELTVYSKVVVEATGYS  161 (453)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTE-------------EEEEECSEEEECCGGG
T ss_pred             EEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCc-------------eEEEEcCEEEECcCCc
Confidence            3578899999999999999999999999999998877754 5443   441             2379999999999999


Q ss_pred             chHHHHHh
Q 023079          115 APALAKRF  122 (287)
Q Consensus       115 s~~l~~~~  122 (287)
                      +. +.+.+
T Consensus       162 s~-vr~~l  168 (453)
T 3atr_A          162 RS-FRSKL  168 (453)
T ss_dssp             CT-TGGGS
T ss_pred             hh-hHHhc
Confidence            86 44555

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.28  E-value=1e-05  Score=77.68  Aligned_cols=74  Identities=12%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ...++...+...|.+.+++.|++|+++++|++++.+++++.|++  .+|.              .+++||.||.|.|.+|
T Consensus       142 ~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~--------------~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          142 TGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGP--------------YPVRARYGVGCDGGRS  207 (570)
T ss_dssp             BBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEE--------------EEEEESEEEECSCSSC
T ss_pred             eEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCc--------------EEEEeCEEEEcCCCCc
Confidence            44688999999999999989999999999999998888888776  5551              2799999999999999


Q ss_pred             hHHHHHhCCCCC
Q 023079          116 PALAKRFIGLDN  127 (287)
Q Consensus       116 ~~l~~~~~~~~~  127 (287)
                       .+.+.+ ++..
T Consensus       208 -~vR~~l-Gi~~  217 (570)
T 3fmw_A          208 -TVRRLA-ADRF  217 (570)
T ss_dssp             -HHHHHT-TCCC
T ss_pred             -hHHHHc-CCCC
Confidence             676777 4443

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.26  E-value=1.4e-05  Score=71.93  Aligned_cols=209  Identities=13%  Similarity=0.117  Sum_probs=109.3

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .++-..+-..|.+.|.+.|++++.+++|+++..+++.+. +.. .++             ...+++||.||.|.|.+|. 
T Consensus        98 ~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~-------------~~~~~~a~~vIgAdG~~S~-  163 (397)
T 3oz2_A           98 VLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNN-------------EIVDVRAKMVIAADGFESE-  163 (397)
T ss_dssp             EECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETT-------------EEEEEEEEEEEECCCTTCH-
T ss_pred             EEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccc-------------cceEEEEeEEEeCCccccH-
Confidence            578888999999999999999999999999998887764 332 222             1347999999999999875 


Q ss_pred             HHHHhCCCCCcccCCccc-cceEEEEEcCCCCCCCCceeeeCCCCCCceeEEeeecCCcEEECCCccccCCccccccccc
Q 023079          118 LAKRFIGLDNVFIPPAYY-ARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLN  196 (287)
Q Consensus       118 l~~~~~~~~~~~~p~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~  196 (287)
                      +.+.+ +......+.... ...++....... .+-...++........-..+.|..++...+|.....            
T Consensus       164 vr~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~------------  229 (397)
T 3oz2_A          164 FGRWA-GLKSVILARNDIISALQYRMINVDV-DPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSI------------  229 (397)
T ss_dssp             HHHHH-TCGGGCCCGGGEEEEEEEEEESCCC-CTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEET------------
T ss_pred             HHHHc-CCCcccccceeeeeeEEEEeecccc-CcccceeeeeccCCCceEEEeecccceeEEEEeecc------------
Confidence            44555 332221110000 011111111111 110011111111111113446655665555421110            


Q ss_pred             ccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCC--CCCCCeEEecCCCCCCCCeEEEeCCCCchhhhh
Q 023079          197 RFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR--QSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSS  274 (287)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~a  274 (287)
                        +...........++.+.+.+|.+........+.|..|......  ..++-+++|-.- |.      +.-++|.|+.+|
T Consensus       230 --~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA-~~------~~P~~G~Gi~~A  300 (397)
T 3oz2_A          230 --NWIHNRFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMPITMPGLMLVGDAA-RL------IDPITGGGIANA  300 (397)
T ss_dssp             --TTSCSHHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSCCEETTEEECGGGG-TC------SCTTTCCCHHHH
T ss_pred             --chhhhhhhHHHHHHHHHHhCccccccceeeeeeccccccCcccceeeeeEEEccccc-cc------CCCCcchhHHHH
Confidence              1111233445556666666676666655666666555422110  001122344331 11      122456788888


Q ss_pred             HHHHHHHHHHH
Q 023079          275 MAIAEYVAAKF  285 (287)
Q Consensus       275 p~~g~~va~~i  285 (287)
                      ..-|+.+|+.|
T Consensus       301 ~~~g~~~A~~i  311 (397)
T 3oz2_A          301 IVSGMYAAQVT  311 (397)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88777777765

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.20  E-value=2.1e-05  Score=75.07  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=59.2

Q ss_pred             CCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           36 PASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        36 p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      +.+..+++..+...|.+.+++. |++++++ +|+++..++++  +.|++.+|.               +++||.||+|+|
T Consensus       186 ~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~---------------~i~ad~vI~A~G  249 (550)
T 2e4g_A          186 NYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGR---------------VFDADLFVDCSG  249 (550)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSC---------------EEECSEEEECCG
T ss_pred             CcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCC---------------EEECCEEEECCC
Confidence            3456799999999999999998 9999999 99999876543  568888772               799999999999


Q ss_pred             CCchHHHHHh
Q 023079          113 LSAPALAKRF  122 (287)
Q Consensus       113 ~~s~~l~~~~  122 (287)
                      .++..+.+.+
T Consensus       250 ~~S~~~~~~l  259 (550)
T 2e4g_A          250 FRGLLINKAM  259 (550)
T ss_dssp             GGCCCCCCCT
T ss_pred             CchhhHHHHh
Confidence            9987655555

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.18  E-value=6.9e-05  Score=70.67  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++...+...|.+.+.+.|++++++++|++++.+++++.|++.++.           + +.+++||.||.|.|++|. 
T Consensus       101 ~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~-----------g-~~~~~a~~vVgADG~~S~-  167 (499)
T 2qa2_A          101 VKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPD-----------G-PRSLTTRYVVGCDGGRST-  167 (499)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSS-----------C-EEEEEEEEEEECCCTTCH-
T ss_pred             eEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC-----------C-cEEEEeCEEEEccCcccH-
Confidence            356788899999999999999999999999999988888888877662           1 247999999999999986 


Q ss_pred             HHHHhCCCC
Q 023079          118 LAKRFIGLD  126 (287)
Q Consensus       118 l~~~~~~~~  126 (287)
                      +.+.+ ++.
T Consensus       168 VR~~l-g~~  175 (499)
T 2qa2_A          168 VRKAA-GFD  175 (499)
T ss_dssp             HHHHT-TCC
T ss_pred             HHHHc-CCC
Confidence            55666 443

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.12  E-value=9.2e-05  Score=69.80  Aligned_cols=75  Identities=19%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++...+...|.+.+++.|++++++++|++++.+++++.|++.++.+            +.+++||+||.|.|.+|. 
T Consensus       100 ~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g------------~~~~~a~~vVgADG~~S~-  166 (500)
T 2qa1_A          100 AKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEG------------KHTLRAAYLVGCDGGRSS-  166 (500)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTE------------EEEEEESEEEECCCTTCH-
T ss_pred             eeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCC------------CEEEEeCEEEECCCcchH-
Confidence            3567788899999999999999999999999999988888887766521            237999999999999985 


Q ss_pred             HHHHhCCCC
Q 023079          118 LAKRFIGLD  126 (287)
Q Consensus       118 l~~~~~~~~  126 (287)
                      +.+.+ +..
T Consensus       167 VR~~l-g~~  174 (500)
T 2qa1_A          167 VRKAA-GFD  174 (500)
T ss_dssp             HHHHT-TCC
T ss_pred             HHHHc-CCC
Confidence            65666 444

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.09  E-value=4.1e-05  Score=72.75  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             EcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           34 LSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        34 ~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      +.+.++.+++..+...|.+.|++.|++++.+ +|+++...+++  +.|++.+|.               +++||.||.|+
T Consensus       155 ~~~~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~---------------~i~ad~vV~A~  218 (538)
T 2aqj_A          155 QMSHAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGR---------------TLEADLFIDCS  218 (538)
T ss_dssp             CSCCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSC---------------EECCSEEEECC
T ss_pred             CCCccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCc---------------EEEeCEEEECC
Confidence            4567789999999999999999999999999 89999876443  568888772               79999999999


Q ss_pred             CCCchHHHHHh
Q 023079          112 GLSAPALAKRF  122 (287)
Q Consensus       112 G~~s~~l~~~~  122 (287)
                      |.++..+.+.+
T Consensus       219 G~~s~~~~~~l  229 (538)
T 2aqj_A          219 GMRGLLINQAL  229 (538)
T ss_dssp             GGGCCCCCCCT
T ss_pred             CCchhhHHHHh
Confidence            99987655444

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.07  E-value=7.8e-05  Score=70.68  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC----eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN----CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~----~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ...++...+...|.+.++++|++++++++|++++.+++    ++.|++.++.+            ..+++||.||.|.|.
T Consensus       114 ~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~------------~~~i~a~~vV~AdG~  181 (535)
T 3ihg_A          114 WAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDG------------EYDLRAGYLVGADGN  181 (535)
T ss_dssp             CBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTE------------EEEEEEEEEEECCCT
T ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCC------------eEEEEeCEEEECCCC
Confidence            45678889999999999999999999999999999887    88877765411            238999999999999


Q ss_pred             CchHHHHHhCCCC
Q 023079          114 SAPALAKRFIGLD  126 (287)
Q Consensus       114 ~s~~l~~~~~~~~  126 (287)
                      +| .+.+.+ ++.
T Consensus       182 ~S-~vR~~l-gi~  192 (535)
T 3ihg_A          182 RS-LVRESL-GIG  192 (535)
T ss_dssp             TC-HHHHHT-TCC
T ss_pred             cc-hHHHHc-CCC
Confidence            98 777777 344

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.02  E-value=1.4e-05  Score=73.67  Aligned_cols=67  Identities=18%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc-----
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA-----  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s-----  115 (287)
                      .++..+...|.+.+++.|++++++++|+++..++++|.|++.+|                +++||.||+|+|.|+     
T Consensus       129 ~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g----------------~i~ad~VIlAtG~~S~p~~g  192 (417)
T 3v76_A          129 HSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG----------------TVDAASLVVASGGKSIPKMG  192 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE----------------EEEESEEEECCCCSSCGGGT
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc----------------EEEeeEEEECCCCccCCCCC
Confidence            46788999999999999999999999999999888899999888                899999999999998     


Q ss_pred             -----hHHHHHhC
Q 023079          116 -----PALAKRFI  123 (287)
Q Consensus       116 -----~~l~~~~~  123 (287)
                           ..+++.++
T Consensus       193 s~g~g~~la~~~G  205 (417)
T 3v76_A          193 ATGLAYRIAEQFG  205 (417)
T ss_dssp             CCCHHHHHHHHTT
T ss_pred             CCcHHHHHHHHCC
Confidence                 46777763

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.93  E-value=0.00013  Score=67.42  Aligned_cols=55  Identities=20%  Similarity=0.211  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++.+|++.+.+  ++|+++++|++|+.++++|.|+|++|.               +++||+||+|++++.
T Consensus       235 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          235 QTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCYSLELDNGV---------------TLDADSVIVTAPHKA  289 (470)
T ss_dssp             HHHHHHHHHTCCS--EEEECSCCEEEEEECSSSEEEEESSSC---------------EEEESEEEECSCHHH
T ss_pred             HHHHHHHHHhcCC--CEEEeCCceEEEEEcCCeEEEEECCCC---------------EEECCEEEECCCHHH
Confidence            4556665544322  799999999999998888999998883               799999999999875

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.92  E-value=0.00025  Score=68.14  Aligned_cols=79  Identities=15%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEE-EEecC------CcccccCCCCCCCCCceeEecCEEEE
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISE------SKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-V~t~~------g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      ...++...+...|.+.|++.|++|+.+++|+++..+++ .+. |++.+      |....      --+...+++||.||.
T Consensus       138 ~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~------~~~~g~~i~Ad~VV~  211 (584)
T 2gmh_A          138 NYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKT------TFERGLELHAKVTIF  211 (584)
T ss_dssp             CEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEE------EEECCCEEECSEEEE
T ss_pred             CEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCccc------ccCCceEEECCEEEE
Confidence            34567789999999999999999999999999988753 453 77753      31000      000002799999999


Q ss_pred             cCCCCch---HHHHHh
Q 023079          110 SAGLSAP---ALAKRF  122 (287)
Q Consensus       110 aaG~~s~---~l~~~~  122 (287)
                      |.|.++.   .+.+.+
T Consensus       212 AdG~~S~vr~~l~~~~  227 (584)
T 2gmh_A          212 AEGCHGHLAKQLYKKF  227 (584)
T ss_dssp             CCCTTCHHHHHHHHHT
T ss_pred             eeCCCchHHHHHHHHh
Confidence            9999986   444444

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.90  E-value=4.5e-05  Score=70.83  Aligned_cols=67  Identities=21%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc-----
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA-----  115 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s-----  115 (287)
                      ++..++.+|.+.+++.|++++++++|+++..++++ +.|++.+|.               +++||.||+|+|.|+     
T Consensus       132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~---------------~i~Ad~VVlAtGg~s~~~~g  196 (447)
T 2i0z_A          132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGE---------------VLETNHVVIAVGGKSVPQTG  196 (447)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCC---------------EEECSCEEECCCCSSSGGGS
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCC---------------EEECCEEEECCCCCcCCCCC
Confidence            35889999999999999999999999999987776 779888772               599999999999999     


Q ss_pred             -----hHHHHHhC
Q 023079          116 -----PALAKRFI  123 (287)
Q Consensus       116 -----~~l~~~~~  123 (287)
                           ..+++.+|
T Consensus       197 ~tG~g~~la~~~G  209 (447)
T 2i0z_A          197 STGDGYAWAEKAG  209 (447)
T ss_dssp             CSSHHHHHHHHTT
T ss_pred             CCcHHHHHHHHCC
Confidence                 57777773

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.89  E-value=3.1e-05  Score=72.52  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=56.2

Q ss_pred             eeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           31 KALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        31 ~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      .|++.|.+|   ...++.+|++.++++|++|+++++|++|..+++++. |++.+|.               +++||.||.
T Consensus       211 ~G~~~p~GG---~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~---------------~~~ad~VV~  272 (501)
T 4dgk_A          211 WGVWFPRGG---TGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGR---------------RFLTQAVAS  272 (501)
T ss_dssp             CCEEEETTH---HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSC---------------EEECSCEEE
T ss_pred             CCeEEeCCC---CcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCc---------------EEEcCEEEE
Confidence            456666666   478999999999999999999999999999999876 9999883               899999999


Q ss_pred             cCCCCch
Q 023079          110 SAGLSAP  116 (287)
Q Consensus       110 aaG~~s~  116 (287)
                      +++++..
T Consensus       273 ~a~~~~~  279 (501)
T 4dgk_A          273 NADVVHT  279 (501)
T ss_dssp             CCC----
T ss_pred             CCCHHHH
Confidence            9998754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.88  E-value=2.7e-05  Score=71.45  Aligned_cols=66  Identities=12%  Similarity=0.078  Sum_probs=57.7

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe----CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc--
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE----GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA--  115 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~----~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s--  115 (287)
                      ++..++..|.+.+++.|++++++++|+++..+    +++|.|+++++                +++||.||+|+|.++  
T Consensus       107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g----------------~i~ad~VVlAtG~~s~p  170 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST----------------QWQCKNLIVATGGLSMP  170 (401)
T ss_dssp             CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE----------------EEEESEEEECCCCSSCG
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC----------------EEECCEEEECCCCccCC
Confidence            67889999999999999999999999999876    56788988777                799999999999998  


Q ss_pred             --------hHHHHHhC
Q 023079          116 --------PALAKRFI  123 (287)
Q Consensus       116 --------~~l~~~~~  123 (287)
                              ..+++.+|
T Consensus       171 ~~g~~G~g~~la~~~G  186 (401)
T 2gqf_A          171 GLGATPFGYQIAEQFG  186 (401)
T ss_dssp             GGTCCSHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHCC
Confidence                    46677773

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.81  E-value=0.00011  Score=66.98  Aligned_cols=67  Identities=9%  Similarity=0.112  Sum_probs=57.6

Q ss_pred             CCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           36 PASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        36 p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +....++...+...|.+.+.+  ++++++++|++++.++++|.|++.+|.               +++||.||.|.|.+|
T Consensus       119 ~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          119 SRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGS---------------SASGDLLIAADGSHS  181 (407)
T ss_dssp             SCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECCCTTC
T ss_pred             CceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCC---------------EEeeCEEEECCCcCh
Confidence            345578888999999988877  899999999999999899999998883               799999999999998


Q ss_pred             hHHH
Q 023079          116 PALA  119 (287)
Q Consensus       116 ~~l~  119 (287)
                      .--.
T Consensus       182 ~vr~  185 (407)
T 3rp8_A          182 ALRP  185 (407)
T ss_dssp             SSHH
T ss_pred             HHHH
Confidence            7543

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.81  E-value=0.00014  Score=67.55  Aligned_cols=54  Identities=13%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++.+|++.+.+  ++|+++++|++|+.++++|.|+|.+|                +++||+||+|+++|.
T Consensus       236 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g----------------~~~ad~vV~a~p~~~  289 (475)
T 3lov_A          236 ESLIERLEEVLER--SEIRLETPLLAISREDGRYRLKTDHG----------------PEYADYVLLTIPHPQ  289 (475)
T ss_dssp             HHHHHHHHHHCSS--CEEESSCCCCEEEEETTEEEEECTTC----------------CEEESEEEECSCHHH
T ss_pred             HHHHHHHHhhccC--CEEEcCCeeeEEEEeCCEEEEEECCC----------------eEECCEEEECCCHHH
Confidence            4556666544433  79999999999999988999999888                799999999999875

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.73  E-value=9.3e-05  Score=70.58  Aligned_cols=68  Identities=21%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             CCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           36 PASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        36 p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      |..|..+...++..|.+.+++.|++++++++|+++..+++++ .|++.+|.               +++||.||+|+|.|
T Consensus       212 p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~---------------~i~Ad~VVlA~G~~  276 (549)
T 3nlc_A          212 PHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGE---------------EIKSRHVVLAVGHS  276 (549)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSC---------------EEECSCEEECCCTT
T ss_pred             cccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCC---------------EEECCEEEECCCCC
Confidence            444566778899999999999999999999999999887765 58888872               79999999999999


Q ss_pred             chHH
Q 023079          115 APAL  118 (287)
Q Consensus       115 s~~l  118 (287)
                      +...
T Consensus       277 s~~~  280 (549)
T 3nlc_A          277 ARDT  280 (549)
T ss_dssp             CHHH
T ss_pred             hhhH
Confidence            9744

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.72  E-value=9e-05  Score=67.30  Aligned_cols=68  Identities=15%  Similarity=0.268  Sum_probs=60.4

Q ss_pred             eeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           39 GIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++...+...|.+.+++. |++++++++|+++..+++++  .|++.+|.               +++||.||.|.|.++
T Consensus       102 ~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~---------------~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          102 ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGR---------------VLRPRVVVGADGIAS  166 (399)
T ss_dssp             EECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSC---------------EEEEEEEEECCCTTC
T ss_pred             ccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCC---------------EEECCEEEECCCCCh
Confidence            4688999999999999988 99999999999999888888  89888872               799999999999999


Q ss_pred             hHHHHHh
Q 023079          116 PALAKRF  122 (287)
Q Consensus       116 ~~l~~~~  122 (287)
                      . +.+.+
T Consensus       167 ~-vr~~l  172 (399)
T 2x3n_A          167 Y-VRRRL  172 (399)
T ss_dssp             H-HHHHT
T ss_pred             H-HHHHh
Confidence            8 66666

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.71  E-value=0.00013  Score=58.56  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=55.7

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK  120 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~  120 (287)
                      +.+..+...+.+.+++.|++++.+ +|++++.+++.+.|++++|                +++||.||+|+|.++ .+.+
T Consensus        53 ~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g----------------~i~ad~vI~A~G~~~-~~~~  114 (180)
T 2ywl_A           53 PSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG----------------VEKAERLLLCTHKDP-TLPS  114 (180)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC----------------EEEEEEEEECCTTCC-HHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC----------------EEEECEEEECCCCCC-Cccc
Confidence            567888999999999999999999 9999998777788988877                799999999999997 4556


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       115 ~~  116 (180)
T 2ywl_A          115 LL  116 (180)
T ss_dssp             HH
T ss_pred             cC
Confidence            66

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.58  E-value=4.9e-05  Score=70.34  Aligned_cols=67  Identities=18%  Similarity=0.093  Sum_probs=56.1

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      ++.|.+|   ...++.+|++.++++|++|+++++|++|..+++++. |++ +|.               +++||+||+|+
T Consensus       226 ~~~p~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~---------------~~~ad~VV~a~  286 (433)
T 1d5t_A          226 YLYPLYG---LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGE---------------VARCKQLICDP  286 (433)
T ss_dssp             EEEETTC---TTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTE---------------EEECSEEEECG
T ss_pred             EEEeCcC---HHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCe---------------EEECCEEEECC
Confidence            6667777   468999999999999999999999999998888776 554 452               79999999999


Q ss_pred             CCCchHH
Q 023079          112 GLSAPAL  118 (287)
Q Consensus       112 G~~s~~l  118 (287)
                      |+|...+
T Consensus       287 ~~~~~~~  293 (433)
T 1d5t_A          287 SYVPDRV  293 (433)
T ss_dssp             GGCGGGE
T ss_pred             CCCcccc
Confidence            9997643

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.57  E-value=7.4e-05  Score=69.47  Aligned_cols=67  Identities=16%  Similarity=0.110  Sum_probs=55.3

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      ...|.+|.   ..++.+|++.++++|++|+++++|++|..+  ++++ .|++. |.               +++||+||+
T Consensus       234 ~~~p~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~-g~---------------~~~ad~VV~  294 (453)
T 2bcg_G          234 YLYPMYGL---GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK-LG---------------TFKAPLVIA  294 (453)
T ss_dssp             EEEETTCT---THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET-TE---------------EEECSCEEE
T ss_pred             eEeeCCCH---HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC-Ce---------------EEECCEEEE
Confidence            43566663   589999999999999999999999999988  7775 57774 41               799999999


Q ss_pred             cCCCCchHH
Q 023079          110 SAGLSAPAL  118 (287)
Q Consensus       110 aaG~~s~~l  118 (287)
                      |+|+|+..+
T Consensus       295 a~~~~~~~l  303 (453)
T 2bcg_G          295 DPTYFPEKC  303 (453)
T ss_dssp             CGGGCGGGE
T ss_pred             CCCccchhh
Confidence            999997754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.52  E-value=0.00022  Score=69.49  Aligned_cols=95  Identities=7%  Similarity=0.020  Sum_probs=67.2

Q ss_pred             CCCeeeeeCHHHHHhhCCCcccceeEEcCCcee---ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEe--
Q 023079            8 GVHGLRMLEGFEAMKMEPELQCVKALLSPASGI---VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYI--   81 (287)
Q Consensus         8 g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~---vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t--   81 (287)
                      |.+ +++|+++++.++++ ....+|...+....   ..+..++.+|.+.+.++|++|+++++|+++..+++++ .|.+  
T Consensus       121 g~~-~~~l~~~e~~~~~~-~~~~gg~~~~R~~~~~d~tG~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~  198 (660)
T 2bs2_A          121 AQK-TTITEEDFRHGLIH-SRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRD  198 (660)
T ss_dssp             SCC-CEEEECGGGTTSBC-CBCCTTCSSCCEECSTTCHHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEE
T ss_pred             ccc-cccccchhhhhhhc-cccccccccceeEeeCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEE
Confidence            444 67888888877653 23334444343222   2367899999999999999999999999998776654 3433  


Q ss_pred             -cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           82 -SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        82 -~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                       .+|             +...++|+.||+|+|.|+..
T Consensus       199 ~~~G-------------~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          199 LVTG-------------DIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             TTTC-------------CEEEEECSEEEECCCCCGGG
T ss_pred             CCCC-------------cEEEEEcCEEEEccCcchhh
Confidence             445             13459999999999999853

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.52  E-value=0.0002  Score=68.51  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=57.8

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEec--CCcccccCCCCCCCCCceeEecCEEE
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYIS--ESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      .+.|.++.+++..++..|.+.+++.|++|+++++|+++..++ +++ .|++.  +|.             ..+|+||.||
T Consensus       239 ~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~-------------~~~i~A~~VV  305 (566)
T 1qo8_A          239 THRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTG-------------YYMIGAKSVV  305 (566)
T ss_dssp             EEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTE-------------EEEEEEEEEE
T ss_pred             eeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCc-------------EEEEEcCEEE
Confidence            455666778899999999999999999999999999998877 654 24443  551             2469999999


Q ss_pred             EcCCCCchH
Q 023079          109 NSAGLSAPA  117 (287)
Q Consensus       109 ~aaG~~s~~  117 (287)
                      +|+|.|+..
T Consensus       306 lAtGg~s~~  314 (566)
T 1qo8_A          306 LATGGYGMN  314 (566)
T ss_dssp             ECCCCCTTC
T ss_pred             EecCCcccC
Confidence            999999863

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.48  E-value=0.00033  Score=67.04  Aligned_cols=71  Identities=14%  Similarity=0.077  Sum_probs=56.6

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEec--CCcccccCCCCCCCCCceeEecCEEE
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYIS--ESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      .+.+.+|...+..++..|.+.+++.|++|+++++|+++..++ +++ .|++.  +|.             ..+|+||.||
T Consensus       244 ~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~-------------~~~i~a~~VV  310 (571)
T 1y0p_A          244 AHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-------------YYWVKADAVI  310 (571)
T ss_dssp             EEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTE-------------EEEEECSEEE
T ss_pred             eEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCc-------------EEEEECCeEE
Confidence            455666667889999999999999999999999999998876 554 24433  451             3469999999


Q ss_pred             EcCCCCch
Q 023079          109 NSAGLSAP  116 (287)
Q Consensus       109 ~aaG~~s~  116 (287)
                      +|+|.|+.
T Consensus       311 lAtGg~~~  318 (571)
T 1y0p_A          311 LATGGFAK  318 (571)
T ss_dssp             ECCCCCTT
T ss_pred             EeCCCccc
Confidence            99999985

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.46  E-value=9e-05  Score=68.85  Aligned_cols=66  Identities=20%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      +++.+.+|   ...++.+|++.+.++|++|+++++|++|..++++ |.|++.++                +++||+||+|
T Consensus       225 ~~~~~~gG---~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~----------------~~~ad~vv~a  285 (477)
T 3nks_A          225 SQWSLRGG---LEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS----------------SLEADHVISA  285 (477)
T ss_dssp             SEEEETTC---TTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSC----------------EEEESEEEEC
T ss_pred             cEEEECCC---HHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCe----------------EEEcCEEEEC
Confidence            34555555   3578999999999999999999999999987766 88988655                7999999999


Q ss_pred             CCCCch
Q 023079          111 AGLSAP  116 (287)
Q Consensus       111 aG~~s~  116 (287)
                      ++++..
T Consensus       286 ~p~~~~  291 (477)
T 3nks_A          286 IPASVL  291 (477)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
Confidence            998754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.44  E-value=0.0003  Score=62.18  Aligned_cols=62  Identities=11%  Similarity=0.055  Sum_probs=54.2

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      +.....+...+.+.+++.|++++++++|+++..+++.|. |+++++                ++++|+||+|+|.++..
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g----------------~~~~d~vV~AtG~~~~~  134 (357)
T 4a9w_A           72 YPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR----------------QWLARAVISATGTWGEA  134 (357)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC----------------EEEEEEEEECCCSGGGB
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC----------------EEEeCEEEECCCCCCCC
Confidence            344577888888888999999999999999999988999 999888                89999999999998754

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.43  E-value=0.00017  Score=67.57  Aligned_cols=65  Identities=15%  Similarity=0.179  Sum_probs=54.1

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      .+..|..|.   ..++++|.+.++++|++|+.+++|++|.. ++++ +.|++.+|.               +++||+||+
T Consensus       247 ~~~yp~gG~---~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~---------------~i~Ad~VI~  308 (475)
T 3p1w_A          247 PFIYPLYGL---GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGE---------------IAYCDKVIC  308 (475)
T ss_dssp             SEEEETTCT---THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSC---------------EEEEEEEEE
T ss_pred             ceEEECCCH---HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCc---------------EEECCEEEE
Confidence            456677874   68999999999999999999999999998 6555 469998872               799999999


Q ss_pred             cCCCC
Q 023079          110 SAGLS  114 (287)
Q Consensus       110 aaG~~  114 (287)
                      |++.+
T Consensus       309 a~~~~  313 (475)
T 3p1w_A          309 DPSYV  313 (475)
T ss_dssp             CGGGC
T ss_pred             CCCcc
Confidence            99988

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.40  E-value=0.00039  Score=62.04  Aligned_cols=61  Identities=11%  Similarity=0.017  Sum_probs=52.7

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+++..+...+.+.+++.|++++.+++|+++..+++.|.|++.++                ++++|+||+|+|.++.
T Consensus        84 ~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----------------~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           84 HISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE----------------TYHADYIFVATGDYNF  144 (369)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC----------------CEEEEEEEECCCSTTS
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC----------------EEEeCEEEECCCCCCc
Confidence            456677888888888889999999999999998877899998877                7999999999999863

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.39  E-value=0.00059  Score=64.33  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=56.8

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE---EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM---NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~---~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ...++...+...|.+.+++.|++++++++|+++..+++++   .+.+.+|.             +.+++||.||.|+|.+
T Consensus       105 ~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~-------------~~~i~ad~VI~AdG~~  171 (512)
T 3e1t_A          105 AYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGV-------------ELMAHARFIVDASGNR  171 (512)
T ss_dssp             EEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSC-------------EEEEEEEEEEECCCTT
T ss_pred             eeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCC-------------EEEEEcCEEEECCCcc
Confidence            4468999999999999999999999999999999988764   34444551             2479999999999999


Q ss_pred             chHHHHHh
Q 023079          115 APALAKRF  122 (287)
Q Consensus       115 s~~l~~~~  122 (287)
                      +.- .+.+
T Consensus       172 S~v-r~~l  178 (512)
T 3e1t_A          172 TRV-SQAV  178 (512)
T ss_dssp             CSS-GGGT
T ss_pred             hHH-HHHc
Confidence            853 3444

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.32  E-value=0.00069  Score=64.85  Aligned_cols=70  Identities=20%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             EcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEec--CCcccccCCCCCCCCCceeEecCEEEE
Q 023079           34 LSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        34 ~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      +.+.++...+..++..|.+.+++.|++++++++|+++..++ +++ .|+..  +|.             ..+|+||.||+
T Consensus       245 ~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~-------------~~~i~A~~VVl  311 (572)
T 1d4d_A          245 HRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-------------YYVIKADAVVI  311 (572)
T ss_dssp             EESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTE-------------EEEEECSEEEE
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCc-------------EEEEEcCEEEE
Confidence            34555556788999999999999999999999999998766 543 34443  451             24699999999


Q ss_pred             cCCCCch
Q 023079          110 SAGLSAP  116 (287)
Q Consensus       110 aaG~~s~  116 (287)
                      |+|.++.
T Consensus       312 AtGg~~~  318 (572)
T 1d4d_A          312 AAGGFAK  318 (572)
T ss_dssp             CCCCCTT
T ss_pred             eCCCCcc
Confidence            9999985

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.30  E-value=0.00079  Score=56.60  Aligned_cols=61  Identities=20%  Similarity=0.030  Sum_probs=50.8

Q ss_pred             cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ++..+...|.+.+++. |++++ +++|+++..+++++ .|++.+|.               +++||.||+|+|.|+...
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~---------------~i~a~~VV~A~G~~s~~~  128 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGP---------------PARGEKVVLAVGSFLGAR  128 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSC---------------CEECSEEEECCTTCSSCE
T ss_pred             CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCC---------------EEECCEEEECCCCChhhc
Confidence            6678888888889887 99998 47999998887775 58888772               799999999999987654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.21  E-value=0.00047  Score=64.99  Aligned_cols=64  Identities=20%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             ecHH-HHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCCch
Q 023079           41 VDSH-SLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP  116 (287)
Q Consensus        41 vdp~-~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~  116 (287)
                      .... .++..|.+.++++|++|+++++|+++..+ ++++ .|.+.++.            ++.+|+|+ .||+|+|.|+.
T Consensus       198 ~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g------------~~~~i~A~k~VVlAtGG~~~  265 (510)
T 4at0_A          198 KGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYG------------KEVAVRARRGVVLATGSFAY  265 (510)
T ss_dssp             BCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETT------------EEEEEEEEEEEEECCCCCTT
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECC------------cEEEEEeCCeEEEeCCChhh
Confidence            3444 89999999999999999999999999987 4554 35544331            13479995 99999999984

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.19  E-value=0.001  Score=62.88  Aligned_cols=70  Identities=10%  Similarity=0.092  Sum_probs=57.3

Q ss_pred             CceeecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           37 ASGIVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        37 ~~g~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ....++...+...|.+.|++ .|++++++ +|+++..++++  +.|++.+|.               +++||.||.|+|.
T Consensus       168 ~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~---------------~i~ad~vV~AdG~  231 (526)
T 2pyx_A          168 YGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNG---------------EISGQLFIDCTGA  231 (526)
T ss_dssp             CEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSC---------------EEECSEEEECSGG
T ss_pred             eeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCC---------------EEEcCEEEECCCc
Confidence            45679999999999999998 89999999 69999876543  367887762               6999999999999


Q ss_pred             CchHHHHHh
Q 023079          114 SAPALAKRF  122 (287)
Q Consensus       114 ~s~~l~~~~  122 (287)
                      +|.-+.+.+
T Consensus       232 ~S~~~~~~l  240 (526)
T 2pyx_A          232 KSLLLGEHL  240 (526)
T ss_dssp             GCCCCCCCT
T ss_pred             chHHHHHHh
Confidence            987545544

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.18  E-value=0.00072  Score=63.13  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++.+|++.+.+.| ++|+++++|++|..+++++.|++.+|.               +++||+||+|+|++..
T Consensus       254 ~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~a~~~~~l  313 (495)
T 2vvm_A          254 QSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGR---------------EFVAKRVVCTIPLNVL  313 (495)
T ss_dssp             HHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCC---------------EEEEEEEEECCCGGGG
T ss_pred             HHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCC---------------EEEcCEEEECCCHHHH
Confidence            3578899999999888 999999999999988888999998872               7999999999998654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.14  E-value=0.0014  Score=58.90  Aligned_cols=66  Identities=18%  Similarity=0.253  Sum_probs=56.1

Q ss_pred             ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++...+...|.+.+.+.|++++++++|++++. + + .|++.+|.               +++||.||.|+|.++. 
T Consensus       101 ~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~~g~---------------~~~ad~vV~AdG~~s~-  161 (379)
T 3alj_A          101 WRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQTGE---------------VLEADLIVGADGVGSK-  161 (379)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEETTSC---------------EEECSEEEECCCTTCH-
T ss_pred             eEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEECCCC---------------EEEcCEEEECCCccHH-
Confidence            45778899999999999999999999999999987 3 3 78887772               7999999999999985 


Q ss_pred             HHHHh
Q 023079          118 LAKRF  122 (287)
Q Consensus       118 l~~~~  122 (287)
                      +.+.+
T Consensus       162 vr~~l  166 (379)
T 3alj_A          162 VRDSI  166 (379)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55555

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.07  E-value=0.0024  Score=55.37  Aligned_cols=83  Identities=13%  Similarity=0.122  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEec---------CCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYIS---------ESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~---------~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      +...++..|.+.+.+ .|++++++++|+++..+++++ .|.+.         ++.          .+++.+++||.||+|
T Consensus       117 ~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~----------~g~~~~i~ad~VV~A  186 (284)
T 1rp0_A          117 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQS----------CMDPNVMEAKIVVSS  186 (284)
T ss_dssp             CHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSS----------CCCCEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccc----------cCceEEEECCEEEEC
Confidence            667888888888876 699999999999999887765 35442         210          012347999999999


Q ss_pred             CC------CCchHHHHHhCCCCCcccCCccccceE
Q 023079          111 AG------LSAPALAKRFIGLDNVFIPPAYYARGC  139 (287)
Q Consensus       111 aG------~~s~~l~~~~~~~~~~~~p~~~~~~g~  139 (287)
                      +|      .|+..++..+ +..+++.|    .+|.
T Consensus       187 tG~~s~~~~~~~~~~~~~-g~~~~v~~----~~g~  216 (284)
T 1rp0_A          187 CGHDGPFGATGVKRLKSI-GMIDHVPG----MKAL  216 (284)
T ss_dssp             CCSSSTTTTHHHHHHHHT-TSSSCCCC----CEEE
T ss_pred             CCCchHHHHHHHHHhhhc-cCCCCcCC----cCCc
Confidence            99      4545555443 33333334    6653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.00  E-value=0.0016  Score=58.91  Aligned_cols=65  Identities=18%  Similarity=0.210  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKR  121 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~  121 (287)
                      +..+...+.+.+++.|++|+++++|++++.+++.+.|++.+|.               +++||.||+|+|.+... +++.
T Consensus       186 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~d~vv~a~G~~p~~~l~~~  250 (384)
T 2v3a_A          186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGE---------------VIPCDLVVSAVGLRPRTELAFA  250 (384)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECSCEEECCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCC---------------EEECCEEEECcCCCcCHHHHHH
Confidence            5677788888889999999999999999887778888888772               79999999999998764 6666


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       251 ~  251 (384)
T 2v3a_A          251 A  251 (384)
T ss_dssp             T
T ss_pred             C
Confidence            6

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.99  E-value=0.0023  Score=57.70  Aligned_cols=68  Identities=13%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ++...+...|.+.+.+.|++++.+++|+++..++ +.+.|++ .+|.             +.+++||.||.|.|.+|. +
T Consensus       100 ~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~-------------~~~~~a~~vV~AdG~~S~-v  165 (394)
T 1k0i_A          100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGE-------------RLRLDCDYIAGCDGFHGI-S  165 (394)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTE-------------EEEEECSEEEECCCTTCS-T
T ss_pred             echHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCc-------------EEEEEeCEEEECCCCCcH-H
Confidence            4567788889998988899999999999998763 5677776 6661             225999999999999987 4


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       166 r~~l  169 (394)
T 1k0i_A          166 RQSI  169 (394)
T ss_dssp             GGGS
T ss_pred             HHhc
Confidence            4444

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.96  E-value=0.0023  Score=56.25  Aligned_cols=61  Identities=23%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+++..+...+.+.+++.|++++.+++|+++..+++.|.|++.+|.               ++++|+||+|+|..+
T Consensus        61 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           61 KVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGN---------------AYTAKAVIIAAGVGA  121 (335)
T ss_dssp             SEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSC---------------EEEEEEEEECCTTSE
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCC---------------EEEeCEEEECCCCCC
Confidence            4677888888888888889999999999999988778889988772               799999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.81  E-value=0.0031  Score=54.75  Aligned_cols=61  Identities=18%  Similarity=0.167  Sum_probs=52.2

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+++..+...+.+.+++.|++++. ++|+++..+++.|.|++.+|.               ++++|+||+|+|.+..
T Consensus        55 ~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~vv~AtG~~~~  115 (311)
T 2q0l_A           55 VVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGK---------------TFEAKSVIIATGGSPK  115 (311)
T ss_dssp             CBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSC---------------EEEEEEEEECCCEEEC
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCC---------------EEECCEEEECCCCCCC
Confidence            468888999888888899999998 799999988888888887772               7999999999997653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.80  E-value=0.0027  Score=55.44  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=66.6

Q ss_pred             hhcCCCeeeeeCHHH-----HHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEE
Q 023079            5 TANGVHGLRMLEGFE-----AMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMN   78 (287)
Q Consensus         5 ~~~g~~~~~~L~~~e-----i~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~   78 (287)
                      ++.|.. +.++++..     ....+|.....   ..+.-..+.+..+...+.+.+++.|++++.+++|+++..+++ .|.
T Consensus        27 ~~~g~~-v~lie~~~~~gG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  102 (332)
T 3lzw_A           27 GMRQAS-VKIIESLPQLGGQLSALYPEKYIY---DVAGFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFK  102 (332)
T ss_dssp             HHTTCC-EEEECSSSSSCHHHHHHCTTSEEC---CSTTCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEE
T ss_pred             HHCCCC-EEEEEcCCCCCceehhcCCCceEe---ccCCCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEE
Confidence            445775 78887653     33344443210   012222356888999999889889999999999999998866 789


Q ss_pred             EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           79 VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        79 V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      |++.+|                ++.+|+||+|+|.+
T Consensus       103 v~~~~g----------------~~~~d~vVlAtG~~  122 (332)
T 3lzw_A          103 LVTNEE----------------THYSKTVIITAGNG  122 (332)
T ss_dssp             EEESSE----------------EEEEEEEEECCTTS
T ss_pred             EEECCC----------------EEEeCEEEECCCCC
Confidence            999888                79999999999994

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.75  E-value=0.0043  Score=57.64  Aligned_cols=64  Identities=25%  Similarity=0.261  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      ..+...+.+.+++.|++|+.+++|++++.+++++.|++.+|.               ++.||.||+|+|.+.+ .+++.+
T Consensus       202 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~aD~Vv~a~G~~p~~~l~~~~  266 (472)
T 3iwa_A          202 KSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKR---------------TLDADLVILAAGVSPNTQLARDA  266 (472)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSC---------------EEECSEEEECSCEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCC---------------EEEcCEEEECCCCCcCHHHHHhC
Confidence            567777888889999999999999999887777878887772               7999999999999865 566666

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.75  E-value=0.0045  Score=55.05  Aligned_cols=61  Identities=21%  Similarity=0.161  Sum_probs=52.7

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+++..+...+.+.+++.|++++.+++|+++..+++ .|.|++.+|.               ++++|+||+|+|..+
T Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~---------------~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           70 EVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGN---------------VYRSRAVLIAAGLGA  131 (360)
T ss_dssp             SEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSC---------------EEEEEEEEECCTTCS
T ss_pred             CCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCc---------------EEEeeEEEEccCCCc
Confidence            367888999999999989999999999999988765 7889988773               799999999999854

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.72  E-value=0.0033  Score=60.87  Aligned_cols=60  Identities=15%  Similarity=0.026  Sum_probs=51.0

Q ss_pred             eecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ++|...+...|.+.+++ .|++++ +++|+++..+++.+ .|.+.+|.               +++|+.||+|+|.|+
T Consensus       120 ~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~---------------~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          120 QADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGL---------------KFRAKAVVLTVGTFL  181 (651)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSE---------------EEEEEEEEECCSTTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCC---------------EEECCEEEEcCCCCc
Confidence            68888999999999988 699995 57999998877765 68888772               799999999999984

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.72  E-value=0.004  Score=53.39  Aligned_cols=91  Identities=7%  Similarity=-0.071  Sum_probs=66.0

Q ss_pred             chhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEec
Q 023079            4 GTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYIS   82 (287)
Q Consensus         4 ~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~   82 (287)
                      +++.|.+ +.++++......+|....    -.+.....++..+...+.+.+++. +++++. ++|+++..+++.|.|++.
T Consensus        21 l~~~g~~-v~lie~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~   94 (297)
T 3fbs_A           21 LGRARKN-ILLVDAGERRNRFASHSH----GFLGQDGKAPGEIIAEARRQIERYPTIHWVE-GRVTDAKGSFGEFIVEID   94 (297)
T ss_dssp             HHHTTCC-EEEEECCCCGGGGCSCCC----SSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEEEETTEEEEEET
T ss_pred             HHhCCCC-EEEEeCCCcccccchhhc----CCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEEEcCCeEEEEEC
Confidence            3456775 888876554443332210    012233578889999998888887 788875 599999998888999998


Q ss_pred             CCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           83 ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ++.               ++++|+||+|+|...
T Consensus        95 ~g~---------------~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           95 GGR---------------RETAGRLILAMGVTD  112 (297)
T ss_dssp             TSC---------------EEEEEEEEECCCCEE
T ss_pred             CCC---------------EEEcCEEEECCCCCC
Confidence            882               799999999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.72  E-value=0.0041  Score=56.56  Aligned_cols=65  Identities=18%  Similarity=0.194  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAK  120 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~  120 (287)
                      +..+...+.+.++++|++|+++++|+++..+++++ .|++.+|.               ++.||.||+|+|...+. +++
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~---------------~i~aD~Vv~a~G~~p~~~l~~  247 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGN---------------TLPCDLVVVGVGVIPNVEIAA  247 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSC---------------EEECSEEEECCCEEECCHHHH
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCC---------------EEEcCEEEECcCCccCHHHHH
Confidence            45677888888899999999999999998877666 48888883               79999999999998764 666


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       248 ~~  249 (404)
T 3fg2_P          248 AA  249 (404)
T ss_dssp             HT
T ss_pred             hC
Confidence            66

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=96.69  E-value=0.0053  Score=59.34  Aligned_cols=61  Identities=15%  Similarity=0.178  Sum_probs=51.9

Q ss_pred             eecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ++|...+...|.+.+++. |++++. .+|+++..+++.+. |.+.+|.               +++|+.||+|+|.|+.
T Consensus       113 ~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~---------------~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          113 QADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGR---------------AIQAKAAILACGTFLN  175 (641)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSC---------------EEEEEEEEECCTTCBT
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCc---------------EEEeCEEEECcCCCCC
Confidence            688899999999888885 999975 58999988877775 8888773               7999999999999855

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.69  E-value=0.005  Score=59.43  Aligned_cols=60  Identities=17%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             eecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ++|...+...|.+.+++ .|++++ +++|+++..+++++ .|.+.+|.               +++|+.||+|+|.|+
T Consensus       119 ~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~---------------~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          119 QADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGV---------------EYKTKAVVVTTGTFL  180 (637)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSC---------------EEECSEEEECCTTCB
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCc---------------EEEeCEEEEccCCCc
Confidence            67889999999999988 599996 57999998877766 58888873               799999999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.69  E-value=0.0039  Score=58.89  Aligned_cols=66  Identities=12%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe----EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC----MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~----~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-  117 (287)
                      +..+...+.+.++++|++|+++++|+++..++++    +.|++++|.              .++.||.||+|+|.+.+. 
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~--------------~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGE--------------MRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEE--------------EEEECSCEEECCCCEECCH
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCc--------------EEEEcCEEEECcCCccCCc
Confidence            4567788888899999999999999999876554    678887771              269999999999999876 


Q ss_pred             -HHHHh
Q 023079          118 -LAKRF  122 (287)
Q Consensus       118 -l~~~~  122 (287)
                       +++.+
T Consensus       320 ~~l~~~  325 (523)
T 1mo9_A          320 ELAKIL  325 (523)
T ss_dssp             HHHHHH
T ss_pred             cCHHHc
Confidence             56666

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.66  E-value=0.0054  Score=58.89  Aligned_cols=63  Identities=11%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+..++.+|.+.+++.|++|+++++|+++..+ ++++ .|..   .+|             +...+.|+.||+|+|.|+.
T Consensus       141 ~g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g-------------~~~~i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          141 TGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETG-------------EVVYFKARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTC-------------CEEEEEEEEEEECCCCCGG
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCC-------------eEEEEEcCEEEECCCCCcc
Confidence            36789999999999999999999999999885 5544 3443   344             2346999999999999986


Q ss_pred             H
Q 023079          117 A  117 (287)
Q Consensus       117 ~  117 (287)
                      .
T Consensus       208 ~  208 (588)
T 2wdq_A          208 I  208 (588)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.66  E-value=0.0035  Score=54.39  Aligned_cols=60  Identities=10%  Similarity=0.034  Sum_probs=51.4

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+.+..+...+.+.+++.|++++. ++|+++..+++.+.|++.++.               ++++|+||+|+|.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~---------------~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           66 EIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKG---------------EFKADSVILGIGVKR  125 (323)
T ss_dssp             TEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSC---------------EEEEEEEEECCCCEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCC---------------EEEcCEEEECcCCCC
Confidence            367889999999999999999998 899999988888999998862               799999999999873

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.66  E-value=0.0048  Score=56.28  Aligned_cols=65  Identities=12%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAK  120 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~  120 (287)
                      +..+...+.+.++++|++|+++++|+++..+++++ .|++.+|.               ++.||.||+|+|...+. +++
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~---------------~i~aD~Vv~a~G~~p~~~l~~  257 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGS---------------VIPADIVIVGIGIVPCVGALI  257 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSC---------------EEECSEEEECSCCEESCHHHH
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCC---------------EEEcCEEEECCCCccChHHHH
Confidence            46777888888899999999999999998876666 58888883               79999999999998764 666


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       258 ~~  259 (415)
T 3lxd_A          258 SA  259 (415)
T ss_dssp             HT
T ss_pred             hC
Confidence            65

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.65  E-value=0.005  Score=58.47  Aligned_cols=64  Identities=17%  Similarity=0.187  Sum_probs=53.5

Q ss_pred             eeecHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           39 GIVDSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ...+...+...+.+.+++.|+  .++++++|+++..+++  .|.|++++|.               +++||+||+|+|.+
T Consensus        82 ~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~---------------~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           82 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE---------------VYRAKYVVNAVGLL  146 (540)
T ss_dssp             SEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC---------------EEEEEEEEECCCSC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCC---------------EEEeCEEEECCccc
Confidence            356677788888888888898  8999999999988765  7999999882               69999999999997


Q ss_pred             chH
Q 023079          115 APA  117 (287)
Q Consensus       115 s~~  117 (287)
                      +..
T Consensus       147 s~p  149 (540)
T 3gwf_A          147 SAI  149 (540)
T ss_dssp             CSB
T ss_pred             ccC
Confidence            644

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.62  E-value=0.0035  Score=58.78  Aligned_cols=59  Identities=14%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++|+++++|+++..+++++.|++.+|.               ++.||.||+|+|.+.+.
T Consensus       223 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          223 ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGR---------------TVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSC---------------EEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCc---------------EEEcCEEEECCCCCcCC
Confidence            467778888889999999999999999887767888877772               79999999999998765

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.62  E-value=0.0041  Score=57.86  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             eeecHHHHHHHHHHHHHHCCcE--EEcCceeEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           39 GIVDSHSLMLSLVGEAENHGTT--FSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..+....+...+.+.+++.|++  ++++++|+++...++  .|.|++.++.++          +..++++|.||+|+|.+
T Consensus        96 ~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g----------~~~~~~~d~VVvAtG~~  165 (464)
T 2xve_A           96 SYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD----------TIYSEEFDYVVCCTGHF  165 (464)
T ss_dssp             SSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT----------EEEEEEESEEEECCCSS
T ss_pred             CCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC----------ceEEEEcCEEEECCCCC
Confidence            3556677888888888888988  899999999998765  788887653111          12379999999999987


Q ss_pred             chHH
Q 023079          115 APAL  118 (287)
Q Consensus       115 s~~l  118 (287)
                      +...
T Consensus       166 s~p~  169 (464)
T 2xve_A          166 STPY  169 (464)
T ss_dssp             SSBC
T ss_pred             CCCc
Confidence            6543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.60  E-value=0.0028  Score=55.63  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=50.4

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +++..+...+.+.+++.|++++.++ |+++..+++.|.|++ ++.               ++++|+||+|+|.++.
T Consensus        67 ~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~---------------~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           67 ILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSK---------------AILADAVILAIGAVAK  125 (333)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSE---------------EEEEEEEEECCCEEEC
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCc---------------EEEcCEEEECCCCCcC
Confidence            6778889999888999999999886 999988777888888 552               7999999999999854

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.60  E-value=0.0036  Score=58.08  Aligned_cols=59  Identities=7%  Similarity=0.027  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      +..+...+.+.++++|++++++++|+++..+++.+.|+++++                ++.+|.||+|+|.+...
T Consensus       215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~~----------------~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHG----------------ELRADKLLVATGRTPNT  273 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETTE----------------EEEESEEEECSCEEESC
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECCc----------------EEEcCEEEECCCCCcCC
Confidence            356778888889999999999999999988777777887754                79999999999998763

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.60  E-value=0.0035  Score=57.87  Aligned_cols=65  Identities=14%  Similarity=-0.068  Sum_probs=50.0

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC---CcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .....+...|...+++.+..++++++|++++..++.|.|++.+   |.            ...++++|.||+|+|.++..
T Consensus       112 ~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~------------~~~~~~~d~VVvAtG~~s~p  179 (447)
T 2gv8_A          112 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGS------------PISKDIFDAVSICNGHYEVP  179 (447)
T ss_dssp             CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTC------------CEEEEEESEEEECCCSSSSB
T ss_pred             CCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCC------------eeEEEEeCEEEECCCCCCCC
Confidence            3455666667677777788899999999999888889988765   41            01369999999999998653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.57  E-value=0.0061  Score=58.93  Aligned_cols=63  Identities=17%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+..++.+|.+.+.+.|++|+++++|+++..+++++ .|.+   .+|             +...+.|+.||+|+|.|+..
T Consensus       153 tG~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G-------------~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          153 TGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDG-------------TIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTC-------------CEEEEEEEEEEECCCCCGGG
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCccccc
Confidence            457899999999999999999999999998877654 3544   344             23479999999999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.52  E-value=0.0051  Score=54.39  Aligned_cols=51  Identities=16%  Similarity=0.095  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .++.+|++.   .|++++++++|+++..++++|.|++.+|.               +++||.||+|+.+
T Consensus       113 ~l~~~l~~~---~g~~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~ad~vV~A~p~  163 (342)
T 3qj4_A          113 SIIKHYLKE---SGAEVYFRHRVTQINLRDDKWEVSKQTGS---------------PEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHHHHHHH---HTCEEESSCCEEEEEECSSSEEEEESSSC---------------CEEESEEEECSCH
T ss_pred             HHHHHHHHh---cCCEEEeCCEEEEEEEcCCEEEEEECCCC---------------EEEcCEEEECCCH
Confidence            444555433   38999999999999998889999998872               5899999999974

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=96.51  E-value=0.0028  Score=59.15  Aligned_cols=60  Identities=10%  Similarity=-0.010  Sum_probs=48.7

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+..++..|.+.+++.|++++++++| ++..+++.+ .|..  .+|                +++||.||+|+|.++..
T Consensus       116 ~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g----------------~~~a~~VVlAtGg~~~~  178 (472)
T 2e5v_A          116 ETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL----------------VEDVDKLVLATGGYSYL  178 (472)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEE----------------ECCCSEEEECCCCCGGG
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCC----------------eEEeeeEEECCCCCccc
Confidence            457889999999998889999999999 998777765 2433  334                67899999999999864

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.49  E-value=0.012  Score=56.99  Aligned_cols=70  Identities=11%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             eeecHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeCC----eEEEEec------CCcccccCCCCCCCCCceeEecCE
Q 023079           39 GIVDSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEGN----CMNVYIS------ESKNLRNWDGVSPLQPELTLIPKL  106 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~~----~~~V~t~------~g~~~~~~~~~~~~~~~~~i~a~~  106 (287)
                      ..++...+...|.+.+++.|+  +++.+++|+++..+++    .+.|++.      +|             .+.+++||.
T Consensus       136 ~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G-------------~~~~i~a~~  202 (639)
T 2dkh_A          136 VILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAG-------------QIETVQARY  202 (639)
T ss_dssp             EECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTT-------------CEEEEEEEE
T ss_pred             EeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCC-------------CeEEEEeCE
Confidence            356778999999999999987  9999999999988652    5776654      33             124799999


Q ss_pred             EEEcCCCCchHHHHHh
Q 023079          107 VVNSAGLSAPALAKRF  122 (287)
Q Consensus       107 VV~aaG~~s~~l~~~~  122 (287)
                      ||.|.|++|. +.+.+
T Consensus       203 vVgADG~~S~-vR~~l  217 (639)
T 2dkh_A          203 VVGCDGARSN-VRRAI  217 (639)
T ss_dssp             EEECCCTTCH-HHHHT
T ss_pred             EEECCCcchH-HHHHh
Confidence            9999999986 66666

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.46  E-value=0.0079  Score=54.38  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK  120 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~  120 (287)
                      ++-..+...|.+.+  .|++++++++|+++..++++|.|++.+|.               +++||.||.|.|.+|. +.+
T Consensus        96 ~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~-vr~  157 (397)
T 2vou_A           96 TSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGT---------------KAEANWVIGADGGASV-VRK  157 (397)
T ss_dssp             EEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSC---------------EEEESEEEECCCTTCH-HHH
T ss_pred             cCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCC---------------EEECCEEEECCCcchh-HHH
Confidence            34456666665554  58999999999999988888999998873               7999999999999985 344


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       158 ~~  159 (397)
T 2vou_A          158 RL  159 (397)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.44  E-value=0.0063  Score=55.48  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      ..+...+.+.++++|++|+++++|.++..++....|++.+|.               ++.||.||+|+|...+ .+++.+
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~---------------~i~aD~Vv~a~G~~p~~~l~~~~  249 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGR---------------SFVADSALICVGAEPADQLARQA  249 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSC---------------EEECSEEEECSCEEECCHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCC---------------EEEcCEEEEeeCCeecHHHHHhC
Confidence            456677778888999999999999999876544578888883               7999999999999877 466666

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.44  E-value=0.016  Score=54.95  Aligned_cols=69  Identities=14%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA  119 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~  119 (287)
                      .++-..+...|.+.+.+.   ++++++|++++.+++++.|++.+..+|          ++.+++||+||.|.|.+|. +.
T Consensus       134 ~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G----------~~~~i~a~~vVgADG~~S~-vR  199 (549)
T 2r0c_A          134 ICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTG----------ATRAVHARYLVACDGASSP-TR  199 (549)
T ss_dssp             ECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTC----------CEEEEEEEEEEECCCTTCH-HH
T ss_pred             ccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCC----------CEEEEEeCEEEECCCCCcH-HH
Confidence            456667777888888776   889999999998888888776551101          1247999999999999987 66


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       200 ~~l  202 (549)
T 2r0c_A          200 KAL  202 (549)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            666

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.43  E-value=0.004  Score=56.40  Aligned_cols=60  Identities=12%  Similarity=0.072  Sum_probs=49.2

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .++-..+...|.+.+.  +++++++++|++++.++++|.|++.+|.               +++||.||.|.|.+|.
T Consensus       124 ~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          124 EINRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKP---------------SETADLVILANGGMSK  183 (398)
T ss_dssp             EECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSC---------------CEEESEEEECSCTTCS
T ss_pred             eECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCc---------------EEecCEEEECCCcchh
Confidence            4566777777776554  3688899999999988888999988873               7999999999999985

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.41  E-value=0.007  Score=55.93  Aligned_cols=59  Identities=14%  Similarity=0.062  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++++++++|++++.+++++.|++.+|.               ++.+|.||+|+|.+...
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGE---------------VLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCe---------------EEEcCEEEECcCCCcCC
Confidence            466777888888899999999999999988778888877662               79999999999988764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.41  E-value=0.0076  Score=56.21  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.+++.|++++.+++|++++.+++++.|++.+|.               ++.||.||+|+|.....
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQ---------------TICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSC---------------EEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCc---------------EEEcCEEEEeeCCCcCC
Confidence            457777888888999999999999999988778888888873               79999999999986554

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.39  E-value=0.0065  Score=52.62  Aligned_cols=61  Identities=8%  Similarity=0.033  Sum_probs=50.9

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC---CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG---NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~---~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++..+...+.+.+++.|++++.+++|+++..+.   +.|.|++++|.               ++++|+||+|+|.+.
T Consensus        52 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~---------------~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           52 KTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGA---------------VLKARSIIVATGAKW  115 (310)
T ss_dssp             SEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCC---------------EEEeCEEEECcCCCc
Confidence            45677888888888888999999999999997653   36889888772               799999999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.34  E-value=0.0026  Score=59.10  Aligned_cols=57  Identities=16%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHC--------CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENH--------GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~--------Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++.+|++.+.+.        |++++.+++|++|..+++++.|++.+|.               +++||+||+|++++.
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~a~~~~~  270 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNS---------------VYSADYVMVSASLGV  270 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSC---------------EEEESEEEECSCHHH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCC---------------EEEcCEEEEecCHHH
Confidence            36677777665544        7899999999999998888999998883               799999999999753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.33  E-value=0.0088  Score=52.12  Aligned_cols=60  Identities=13%  Similarity=0.099  Sum_probs=50.0

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .++...+...+.+.+++.|++++. .+|+++..+++.|.|.++++                ++++|+||+|+|.+..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~~----------------~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           68 SIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIETNDD----------------TYHAKYVIITTGTTHK  127 (319)
T ss_dssp             SBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEESSS----------------EEEEEEEEECCCEEEC
T ss_pred             ccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEECCC----------------EEEeCEEEECCCCCcc
Confidence            456778888888888999999988 78999988888888887443                7999999999998643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.32  E-value=0.008  Score=57.18  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=52.0

Q ss_pred             eecHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+...+...+.+.+++.|+  .++++++|+++..+++  .|.|++++|.               +++||+||+|+|.++
T Consensus        95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~---------------~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A           95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD---------------EVSARFLVVAAGPLS  159 (549)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCC---------------EEEEEEEEECCCSEE
T ss_pred             CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCC---------------EEEeCEEEECcCCCC
Confidence            45667777777778888888  8999999999987754  7999998882               699999999999876


Q ss_pred             hH
Q 023079          116 PA  117 (287)
Q Consensus       116 ~~  117 (287)
                      ..
T Consensus       160 ~p  161 (549)
T 4ap3_A          160 NA  161 (549)
T ss_dssp             EC
T ss_pred             CC
Confidence            43

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.28  E-value=0.0079  Score=55.55  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +..+...+.+.+++.|++|+++++|++++..++++.|+++++                ++.||.||+|+|...+
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g----------------~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ----------------EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC----------------EEEESEEEECSCCBCC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC----------------EEEeCEEEECcCCCCC
Confidence            356777788888999999999999999987777778888766                7999999999997543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=96.26  E-value=0.0029  Score=58.64  Aligned_cols=65  Identities=23%  Similarity=0.145  Sum_probs=48.7

Q ss_pred             eeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe---cCCcccccCCCCCCCCCceeEecCEE
Q 023079           31 KALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI---SESKNLRNWDGVSPLQPELTLIPKLV  107 (287)
Q Consensus        31 ~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~V  107 (287)
                      .+.+.+.+|   ...++.+|++.+   |++++++++|++|..++++|.|++   .+|.               +++||+|
T Consensus       228 ~~~~~~~gG---~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~---------------~~~ad~v  286 (478)
T 2ivd_A          228 GALSTFDGG---LQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRA---------------ELSVAQV  286 (478)
T ss_dssp             CCEEEETTC---THHHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEE---------------EEECSEE
T ss_pred             ccEEEECCC---HHHHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCc---------------eEEcCEE
Confidence            445556665   356777776655   789999999999998877888887   5552               7999999


Q ss_pred             EEcCCCCch
Q 023079          108 VNSAGLSAP  116 (287)
Q Consensus       108 V~aaG~~s~  116 (287)
                      |+|++++..
T Consensus       287 V~a~~~~~~  295 (478)
T 2ivd_A          287 VLAAPAHAT  295 (478)
T ss_dssp             EECSCHHHH
T ss_pred             EECCCHHHH
Confidence            999998753

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.23  E-value=0.0089  Score=54.31  Aligned_cols=69  Identities=12%  Similarity=0.110  Sum_probs=53.7

Q ss_pred             eeecHHHHHHHHHHHHHH-CC-cEEEcCceeEEEEEeCCeEEEEecC---CcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           39 GIVDSHSLMLSLVGEAEN-HG-TTFSNNTSVIGGHLEGNCMNVYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~-~G-v~~~~~~~V~~i~~~~~~~~V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ..++...+...|.+.+.+ .| ++++++++|+++.. ++++.|++.+   |.             +.+++||.||.|.|.
T Consensus       102 ~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~-------------~~~~~ad~vV~AdG~  167 (410)
T 3c96_A          102 YSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGK-------------PQALGADVLVGADGI  167 (410)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSC-------------EEEEEESEEEECCCT
T ss_pred             eeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCC-------------ceEEecCEEEECCCc
Confidence            467778899999988876 36 58999999999988 6778777654   41             237999999999999


Q ss_pred             CchHHHHHh
Q 023079          114 SAPALAKRF  122 (287)
Q Consensus       114 ~s~~l~~~~  122 (287)
                      +|.- .+.+
T Consensus       168 ~S~v-R~~l  175 (410)
T 3c96_A          168 HSAV-RAHL  175 (410)
T ss_dssp             TCHH-HHHH
T ss_pred             cchh-HHHh
Confidence            9864 3444

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=96.23  E-value=0.0074  Score=56.65  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=51.1

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe---CCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE---GNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~---~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .++...+...|.+.+++.|++++++++|+++...   ++.+.|++.   +|.             ..+++||.||+|+|.
T Consensus       162 ~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~-------------~~~i~ad~VV~A~G~  228 (497)
T 2bry_A          162 HISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQ-------------LASYEFDVLISAAGG  228 (497)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHH-------------HHTCCBSEEEECCCT
T ss_pred             cCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCC-------------EEEEEcCEEEECCCC
Confidence            3566788888999999999999999999999874   346777763   331             126999999999999


Q ss_pred             CchH
Q 023079          114 SAPA  117 (287)
Q Consensus       114 ~s~~  117 (287)
                      ++.-
T Consensus       229 ~S~~  232 (497)
T 2bry_A          229 KFVP  232 (497)
T ss_dssp             TCCC
T ss_pred             Cccc
Confidence            8754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.17  E-value=0.013  Score=54.94  Aligned_cols=65  Identities=15%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKR  121 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~  121 (287)
                      |..+...+.+.++++|++++++++|+++..+++.+.|++.+|.               ++.||.||+|+|...+ .+++.
T Consensus       225 ~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~---------------~i~aD~Vv~a~G~~pn~~l~~~  289 (493)
T 1m6i_A          225 PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGR---------------KVETDHIVAAVGLEPNVELAKT  289 (493)
T ss_dssp             CHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECCCEEECCTTHHH
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCC---------------EEECCEEEECCCCCccHHHHHH
Confidence            4567777888888999999999999999877777788888873               7999999999998865 36666


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       290 ~  290 (493)
T 1m6i_A          290 G  290 (493)
T ss_dssp             H
T ss_pred             c
Confidence            5

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.13  E-value=0.0086  Score=55.48  Aligned_cols=58  Identities=9%  Similarity=0.105  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEE-ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVY-ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~-t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++|+.+++|.++..++++ +.|+ +++|                ++.||.||+|+|.+.+.
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g----------------~i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHG----------------EIVADQVMLALGRMPNT  270 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSC----------------EEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCC----------------eEEeCEEEEeeCcccCC
Confidence            466788888899999999999999999887555 6788 8888                59999999999987654

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.06  E-value=0.015  Score=55.88  Aligned_cols=62  Identities=10%  Similarity=0.087  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ...++..|.+.+.++| ++++++++|+++..+++++ .|..   .+|             +...++|+.||+|+|.|+..
T Consensus       133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G-------------~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEG-------------TLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTT-------------EEEEEECSCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCCCccc
Confidence            5788999999999888 9999999999998877654 2332   445             12369999999999999865

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.05  E-value=0.0058  Score=55.70  Aligned_cols=51  Identities=18%  Similarity=0.268  Sum_probs=41.0

Q ss_pred             HHHHHH-HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           49 SLVGEA-ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        49 ~l~~~a-~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+++.+ ++.| +|+++++|++|+.+++++.|+|.+|.               +++||+||+|+|+..
T Consensus       208 ~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~vi~a~~~~~  259 (431)
T 3k7m_X          208 DLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGH---------------AFQAHSVIVATPMNT  259 (431)
T ss_dssp             HHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSC---------------CEEEEEEEECSCGGG
T ss_pred             HHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCcch
Confidence            344443 4557 99999999999988888999998882               699999999999643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.99  E-value=0.017  Score=53.11  Aligned_cols=64  Identities=19%  Similarity=0.197  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEE--eCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHL--EGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALA  119 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~--~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~  119 (287)
                      ..+...+.+.++++|++++++++|+++..  +++++ .|++.+|.               ++.||.||+|+|...+ .++
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~---------------~i~~D~Vv~a~G~~p~~~l~  255 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGT---------------RLPADLVIAGIGLIPNCELA  255 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSC---------------EEECSEEEECCCEEECCHHH
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCC---------------EEEcCEEEECCCCCcCcchh
Confidence            45667778888899999999999999987  55555 68888773               7999999999998755 576


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      +.+
T Consensus       256 ~~~  258 (431)
T 1q1r_A          256 SAA  258 (431)
T ss_dssp             HHT
T ss_pred             hcc
Confidence            666

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=95.97  E-value=0.01  Score=55.79  Aligned_cols=54  Identities=11%  Similarity=-0.002  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..++.+|++.   .|++++.+++|++|..++++|.|++.+|.               +++||+||+|++++.
T Consensus       215 ~~l~~~l~~~---lg~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          215 GQVSERIMDL---LGDRVKLERPVIYIDQTRENVLVETLNHE---------------MYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHH---HGGGEESSCCEEEEECSSSSEEEEETTSC---------------EEEESEEEECSCGGG
T ss_pred             HHHHHHHHHH---cCCcEEcCCeeEEEEECCCeEEEEECCCe---------------EEEeCEEEECCCHHH
Confidence            4556666543   48899999999999988888999998873               799999999999875

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.96  E-value=0.012  Score=55.04  Aligned_cols=59  Identities=10%  Similarity=0.067  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++|+++++|+++..+++ .+.|++.+|.               ++.+|.||+|+|.+.+.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~---------------~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGA---------------EADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCc---------------EEEcCEEEEccCCCcCc
Confidence            45677788888999999999999999987654 4778888772               79999999999987664

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.95  E-value=0.016  Score=50.53  Aligned_cols=63  Identities=16%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+.+..+...+.+.+++.|++++.++ |+++..+++.|.+.+....+++            ++++|.||+|+|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~------------~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           80 GLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAE------------PVTTDAIILATGASA  142 (338)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSC------------CEEEEEEEECCCEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCc------------EEEeCEEEECcCCCc
Confidence            46678899999999999999999988 9999888888888874221112            799999999999854

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.93  E-value=0.015  Score=50.67  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=48.7

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--CCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--GNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ++...+...+.+.+++.|++++. .+|+++..+  ++. |.|.+.+|.               ++++|+||+|+|.+.
T Consensus        62 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~---------------~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           62 IAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNG---------------EYRAKAVILATGADP  123 (325)
T ss_dssp             BCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSC---------------EEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCC---------------EEEeCEEEECcCCCc
Confidence            56778888888889999999987 689999876  444 788777772               799999999999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=95.89  E-value=0.0099  Score=54.54  Aligned_cols=52  Identities=8%  Similarity=-0.045  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .++.+|++   +.|++++++++|++|..++++ |.|++ +|.               +++||+||+|++++.
T Consensus       216 ~l~~~l~~---~lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~---------------~~~ad~VI~a~p~~~  268 (453)
T 2yg5_A          216 QVSIRMAE---ALGDDVFLNAPVRTVKWNESGATVLAD-GDI---------------RVEASRVILAVPPNL  268 (453)
T ss_dssp             HHHHHHHH---HHGGGEECSCCEEEEEEETTEEEEEET-TTE---------------EEEEEEEEECSCGGG
T ss_pred             HHHHHHHH---hcCCcEEcCCceEEEEEeCCceEEEEE-CCe---------------EEEcCEEEEcCCHHH
Confidence            45555543   348899999999999998888 88887 441               799999999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=95.87  E-value=0.021  Score=54.10  Aligned_cols=63  Identities=10%  Similarity=0.148  Sum_probs=48.0

Q ss_pred             eecHHHHHHHHHHHHHHCC--cEEEcCceeEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           40 IVDSHSLMLSLVGEAENHG--TTFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~G--v~~~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+...+...+...+++.+  ..++++++|++++.++  +.|.|++++|.               +++||+||+|+|.++
T Consensus        90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~---------------~~~ad~vV~AtG~~s  154 (542)
T 1w4x_A           90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD---------------RIRARYLIMASGQLS  154 (542)
T ss_dssp             SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC---------------EEEEEEEEECCCSCC
T ss_pred             cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCC---------------EEEeCEEEECcCCCC
Confidence            3444555555555566665  6789999999998764  47999998872               799999999999987


Q ss_pred             hH
Q 023079          116 PA  117 (287)
Q Consensus       116 ~~  117 (287)
                      ..
T Consensus       155 ~p  156 (542)
T 1w4x_A          155 VP  156 (542)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.85  E-value=0.015  Score=55.27  Aligned_cols=65  Identities=9%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             eeecHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           39 GIVDSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ...+...+...+.+.+++.|+  .++++++|+++...+  +.|.|++++|.               +++||+||+|+|.+
T Consensus        82 ~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~---------------~~~ad~lV~AtG~~  146 (545)
T 3uox_A           82 NFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEE---------------VVTCRFLISATGPL  146 (545)
T ss_dssp             SSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTE---------------EEEEEEEEECCCSC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCC---------------EEEeCEEEECcCCC
Confidence            345666777777777788887  788999999998754  47999998883               79999999999988


Q ss_pred             chHH
Q 023079          115 APAL  118 (287)
Q Consensus       115 s~~l  118 (287)
                      +...
T Consensus       147 s~p~  150 (545)
T 3uox_A          147 SASR  150 (545)
T ss_dssp             BC--
T ss_pred             CCCc
Confidence            7554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.77  E-value=0.017  Score=54.49  Aligned_cols=62  Identities=10%  Similarity=0.072  Sum_probs=51.6

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..++..+...+.+.+++.|++++.+++|+++..+   ++.+.|++++|.               ++++|+||+|+|++..
T Consensus       263 ~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~---------------~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          263 KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGA---------------VLKARSIIIATGAKWR  327 (521)
T ss_dssp             SBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSC---------------EEEEEEEEECCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCC---------------EEEcCEEEECCCCCcC
Confidence            3567788888888899999999999999999764   236889988773               7999999999998653

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.69  E-value=0.023  Score=54.99  Aligned_cols=63  Identities=16%  Similarity=0.109  Sum_probs=51.0

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC--CeEE-EEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG--NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      +++.|.+|   ...++++|.+.++.+|++++.+++|..|..++  +++. |++.+|.               +++|++||
T Consensus       369 g~~yp~GG---~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge---------------~i~A~~VV  430 (650)
T 1vg0_A          369 PFLFPLYG---QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQ---------------RIISKHFI  430 (650)
T ss_dssp             SEEEETTC---TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSC---------------EEECSEEE
T ss_pred             ceEEeCCc---hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCC---------------EEEcCEEE
Confidence            66677777   36899999999999999999999999998876  5554 6666673               89999998


Q ss_pred             EcCC
Q 023079          109 NSAG  112 (287)
Q Consensus       109 ~aaG  112 (287)
                      ..+.
T Consensus       431 s~~~  434 (650)
T 1vg0_A          431 IEDS  434 (650)
T ss_dssp             EEGG
T ss_pred             EChh
Confidence            7444

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.68  E-value=0.033  Score=51.59  Aligned_cols=59  Identities=10%  Similarity=0.025  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++++.+++|+++..+++++.|++.+|.             + ++.+|.||+|+|...+.
T Consensus       208 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~-------------~-~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          208 LLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGT-------------R-LEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCC-------------E-EEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCc-------------E-EEEcCEEEECCCCCcCC
Confidence            56677778888999999999999999887777888888871             1 49999999999987654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.68  E-value=0.02  Score=50.22  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=47.8

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEE-EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNV-YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V-~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ++...+...+.+.+++.|++++.++ |+++.. ++.|.| .+.++.               ++++|+||+|+|.+.
T Consensus        68 ~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~---------------~~~~d~lviAtG~~~  126 (335)
T 2a87_A           68 ITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQ---------------THRARAVILAMGAAA  126 (335)
T ss_dssp             BCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCC---------------EEEeCEEEECCCCCc
Confidence            5667888888888888999999886 888877 566788 777762               799999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.66  E-value=0.029  Score=51.75  Aligned_cols=58  Identities=9%  Similarity=0.103  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++++++++|++++.++++ +.|++.+|.               ++.+|.||+|+|.....
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGR---------------SETVDCLIWAIGREPAN  267 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCc---------------EEEcCEEEECCCCCcCC
Confidence            56677778888899999999999999876544 778888772               79999999999987654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=95.64  E-value=0.012  Score=55.72  Aligned_cols=63  Identities=16%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEE-eCC------eE-EEEec---CCcccccCCCCCCCCCceeEecCEEEE
Q 023079           42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHL-EGN------CM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~-~~~------~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      .+..++.+|.+.+++ .|++|+++++|+++.. +++      ++ .|.+.   +|             +...++|+.||+
T Consensus       136 ~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G-------------~~~~i~A~~VVl  202 (540)
T 1chu_A          136 TGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKE-------------TVETCHAKAVVL  202 (540)
T ss_dssp             ------CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTT-------------EEEEEECSEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCC-------------cEEEEEcCeEEE
Confidence            445778888888988 6999999999999987 434      44 35543   34             134799999999


Q ss_pred             cCCCCchH
Q 023079          110 SAGLSAPA  117 (287)
Q Consensus       110 aaG~~s~~  117 (287)
                      |+|.++..
T Consensus       203 AtGg~~~~  210 (540)
T 1chu_A          203 ATGGASKV  210 (540)
T ss_dssp             CCCCCGGG
T ss_pred             CCCCcccc
Confidence            99999853

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.59  E-value=0.018  Score=55.80  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             ecHHHHHHHHHHHHHHC-Cc-EEEcCceeEEEEEeCC---eEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           41 VDSHSLMLSLVGEAENH-GT-TFSNNTSVIGGHLEGN---CMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~-Gv-~~~~~~~V~~i~~~~~---~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      +++..+...|.+.+++. |+ +|++++.|+++..+++   ++. |..   .+|             +...|.|+.||+|+
T Consensus       148 ~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~A~~VVlAt  214 (643)
T 1jnr_A          148 IHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREP-------------KFYVFKAKAVILAT  214 (643)
T ss_dssp             EEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSS-------------CEEEEECSEEEECC
T ss_pred             CCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCC-------------cEEEEEcCEEEECC
Confidence            45667888888888887 99 9999999999988765   543 442   344             12469999999999


Q ss_pred             CCCchH
Q 023079          112 GLSAPA  117 (287)
Q Consensus       112 G~~s~~  117 (287)
                      |.++..
T Consensus       215 GG~~~~  220 (643)
T 1jnr_A          215 GGATLL  220 (643)
T ss_dssp             CCBCSS
T ss_pred             Cccccc
Confidence            999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.56  E-value=0.036  Score=51.84  Aligned_cols=58  Identities=16%  Similarity=0.156  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+...+.+.++++|++|+++++|+++..+++ .+.|++.+|.               ++.+|.||+|+|...+.
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~---------------~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGK---------------TLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCc---------------EEEcCEEEECCCCcccc
Confidence            5667777888999999999999999987654 4778888772               79999999999987553

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=95.54  E-value=0.41  Score=46.43  Aligned_cols=82  Identities=5%  Similarity=-0.047  Sum_probs=54.0

Q ss_pred             eecHHHHHHHHHHHHHHCC---cEEEcCceeEEEEEeC--------CeEEEEecCCc------------ccccCCC----
Q 023079           40 IVDSHSLMLSLVGEAENHG---TTFSNNTSVIGGHLEG--------NCMNVYISESK------------NLRNWDG----   92 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~G---v~~~~~~~V~~i~~~~--------~~~~V~t~~g~------------~~~~~~~----   92 (287)
                      .++-..+-..|.+.+++.|   ++++.+++|+++...+        +.+.|+..++.            ....|..    
T Consensus       115 ~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (665)
T 1pn0_A          115 VLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQ  194 (665)
T ss_dssp             ECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHH
T ss_pred             EeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEeccccccccccccccccccccccccc
Confidence            4667788888888888877   8999999999998764        35666543210            0000000    


Q ss_pred             -------------CCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           93 -------------VSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        93 -------------~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                                   +...+...+++||+||-|-|++|. +-+.+
T Consensus       195 ~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~-VR~~l  236 (665)
T 1pn0_A          195 TQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSW-VRRTL  236 (665)
T ss_dssp             HHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCH-HHHHH
T ss_pred             ccccccccccccccCCCCceEEEEeCEEEeccCCCCH-HHHhc
Confidence                         001233457999999999999986 45556

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.46  E-value=0.044  Score=51.86  Aligned_cols=64  Identities=13%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEE-------------------eCCeEEEEecCCcccccCCCCCCCCCceeEec
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHL-------------------EGNCMNVYISESKNLRNWDGVSPLQPELTLIP  104 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-------------------~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a  104 (287)
                      ..+...+.+.+++.|++++++++|.++..                   .++++.+.+.+|.               ++.|
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~---------------~i~~  256 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGE---------------LLET  256 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSC---------------EEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCC---------------EEEc
Confidence            46677777888899999999999999987                   3567777777772               7999


Q ss_pred             CEEEEcCCCCch-HHHHHh
Q 023079          105 KLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus       105 ~~VV~aaG~~s~-~l~~~~  122 (287)
                      |.||+|+|...+ .+++.+
T Consensus       257 D~vi~a~G~~p~~~l~~~~  275 (565)
T 3ntd_A          257 DLLIMAIGVRPETQLARDA  275 (565)
T ss_dssp             SEEEECSCEEECCHHHHHH
T ss_pred             CEEEECcCCccchHHHHhC
Confidence            999999999876 566655

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.46  E-value=0.028  Score=48.71  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=47.6

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +.+..+...+.+.+++.|++++.++ |+++..+++.|.| +.++.               ++++|+||+|+|.+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~---------------~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           59 LTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNG---------------EYTCDALIIATGASA  116 (320)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSC---------------EEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCC---------------EEEcCEEEECCCCCc
Confidence            5667888888888889999999886 8889877777888 55552               799999999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.44  E-value=0.037  Score=50.30  Aligned_cols=61  Identities=21%  Similarity=0.254  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKR  121 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~  121 (287)
                      +..+...+.+.++++|++++++++|++++  ++  .|++.+|.               ++.||.||+|+|...+ .+++.
T Consensus       186 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~---------------~i~~D~vi~a~G~~p~~~l~~~  246 (408)
T 2gqw_A          186 PATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGT---------------RIAADMVVVGIGVLANDALARA  246 (408)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSC---------------EEECSEEEECSCEEECCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCC---------------EEEcCEEEECcCCCccHHHHHh
Confidence            35667778888899999999999999998  33  67777772               7999999999998865 57776


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       247 ~  247 (408)
T 2gqw_A          247 A  247 (408)
T ss_dssp             H
T ss_pred             C
Confidence            6

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.42  E-value=0.055  Score=46.78  Aligned_cols=65  Identities=15%  Similarity=0.105  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...+...+.+.+++.|++++.+++|+++..+++++ .|++.+..+         .+...++.+|.||+|+|...+
T Consensus       183 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~---------~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          183 EKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             CHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTT---------CCCCEEEECSEEEECSCEEES
T ss_pred             CHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccC---------CCceEEEEcCEEEEEeCCCCC
Confidence            34566677777888999999999999998776554 355544100         001237999999999997644

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.037  Score=51.42  Aligned_cols=60  Identities=7%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.+++.|++|+++++|++++.++++  +.|++++|.              .++.+|.||+|+|...+.
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~--------------~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSK--------------SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSC--------------EEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCc--------------EEEEcCEEEECCCCCCcc
Confidence            456677778888899999999999999876544  678887771              179999999999975543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.23  E-value=0.02  Score=51.95  Aligned_cols=44  Identities=9%  Similarity=0.033  Sum_probs=38.3

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +..+.+++.+++|++|..+++++.|++.+|                +++||+||+|++++
T Consensus       214 ~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g----------------~~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          214 ATLEHPAERNVDITRITREDGKVHIHTTDW----------------DRESDVLVLTVPLE  257 (424)
T ss_dssp             HHSSSCCBCSCCEEEEECCTTCEEEEESSC----------------EEEESEEEECSCHH
T ss_pred             HhhcceEEcCCEEEEEEEECCEEEEEECCC----------------eEEcCEEEECCCHH
Confidence            344678899999999998888899999888                79999999999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.17  E-value=0.076  Score=49.10  Aligned_cols=61  Identities=13%  Similarity=0.161  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec-C--CcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS-E--SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~-~--g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.+++.|++++.+++|++++.+++.+.|++. +  |.             +.++.+|.||+|+|.....
T Consensus       210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~-------------~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          210 PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGE-------------GEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCS-------------CEEEEESEEEECSCEEESC
T ss_pred             HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCc-------------eeEEEcCEEEECCCcccCC
Confidence            456677778888999999999999999887777777765 4  51             2369999999999976543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.17  E-value=0.043  Score=50.74  Aligned_cols=61  Identities=23%  Similarity=0.358  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHH-HHCCcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEA-ENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a-~~~Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.+ +++|++++.+++|++++.+++++.|++.  +|.             ..++.+|.||+|+|...+.
T Consensus       215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~-------------~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          215 EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGK-------------RETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC----------------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCc-------------eEEEECCEEEECCCcccCC
Confidence            45667777888 8999999999999999887666766654  441             1279999999999987653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.17  E-value=0.015  Score=55.21  Aligned_cols=66  Identities=18%  Similarity=0.085  Sum_probs=47.0

Q ss_pred             HHHHHHHHH-HCCcEEEcCceeEEEEEeC-CeE-EEEecCCcccccCCCCCCCCCceeEecC-EEEEcCCC-CchHHHHH
Q 023079           47 MLSLVGEAE-NHGTTFSNNTSVIGGHLEG-NCM-NVYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGL-SAPALAKR  121 (287)
Q Consensus        47 ~~~l~~~a~-~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~-~s~~l~~~  121 (287)
                      ..+++..+. +.|+++++++.|+.|..++ +++ .|+..+..+          ++..+++|+ .||+|||+ ++++|+..
T Consensus       211 ~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~----------g~~~~i~A~k~VIlaaG~~~sp~lL~~  280 (546)
T 2jbv_A          211 SVSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAF----------GHTHRLTARNEVVLSTGAIDTPKLLML  280 (546)
T ss_dssp             HHHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTT----------SCEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCC----------CcEEEEEeCccEEEecCccCCchhhhh
Confidence            345555554 5699999999999999876 544 365433210          124579998 99999999 58888766


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      .
T Consensus       281 S  281 (546)
T 2jbv_A          281 S  281 (546)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.14  E-value=0.057  Score=49.68  Aligned_cols=57  Identities=12%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++++++|+++..+++++. |.+ +|.               ++.||.||+|+|...+
T Consensus       191 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~---------------~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          191 KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGK---------------EIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSC---------------EEEESEEEECCCEEEC
T ss_pred             hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCC---------------EEECCEEEECcCCCCC
Confidence            45677788888999999999999999987666665 555 552               7999999999997654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.10  E-value=0.059  Score=50.05  Aligned_cols=63  Identities=17%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      ..+...+.+.+++.|++++++++|+++..+++.+.|.++++                ++.||.||+|+|.... .+++.+
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~----------------~i~~D~vi~a~G~~p~~~~l~~~  290 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG----------------TYKADLVLVSVGVKPNTDFLEGT  290 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTE----------------EEECSEEEECSCEEESCGGGTTS
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCC----------------EEEcCEEEECcCCCcChHHHHhC
Confidence            46677788888999999999999999987533334666554                7999999999998764 344433

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=95.09  E-value=0.019  Score=55.87  Aligned_cols=64  Identities=11%  Similarity=0.096  Sum_probs=49.7

Q ss_pred             eecHHHHHHHHHHHHHHC--CcEEEcCceeEEEEEeCC---eEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           40 IVDSHSLMLSLVGEAENH--GTTFSNNTSVIGGHLEGN---CMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~--Gv~~~~~~~V~~i~~~~~---~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      .+++..+...|.+.++++  |++|++++.|+++..+++   ++. |..   .+|             +...|.|+.||+|
T Consensus       162 ~~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVLA  228 (662)
T 3gyx_A          162 MINGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRAN-------------EVHIFKANAMVVA  228 (662)
T ss_dssp             EEEETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSS-------------CEEEEECSEEEEC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCC-------------cEEEEEeCEEEEC
Confidence            455678889999999887  999999999999988765   543 433   233             2346999999999


Q ss_pred             CCCCch
Q 023079          111 AGLSAP  116 (287)
Q Consensus       111 aG~~s~  116 (287)
                      ||.++.
T Consensus       229 TGG~g~  234 (662)
T 3gyx_A          229 CGGAVN  234 (662)
T ss_dssp             CCCBCS
T ss_pred             CCcccc
Confidence            999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.06  E-value=0.057  Score=49.98  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEe-----cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYI-----SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t-----~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +..+...+.+.++++|++++++++|+++..++++ +.|+.     .++               .++.+|.||+|+|...+
T Consensus       219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~---------------~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKA---------------EVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCC---------------EEEEESEEEECSCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCc---------------eEEEcCEEEECcCCCcC
Confidence            3556777888889999999999999999887665 66663     233               27999999999998755


Q ss_pred             H
Q 023079          117 A  117 (287)
Q Consensus       117 ~  117 (287)
                      .
T Consensus       284 ~  284 (474)
T 1zmd_A          284 T  284 (474)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.00  E-value=0.025  Score=52.52  Aligned_cols=66  Identities=6%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      .++.+.+|.   ..++.+|++.+.+  ++++.+++|++|..++++|.|++.+|..            ..+++||+||+|+
T Consensus       230 ~~~~~~gG~---~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~------------~~~~~ad~vI~a~  292 (489)
T 2jae_A          230 MMFTPVGGM---DRIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGS------------KKSITADYAICTI  292 (489)
T ss_dssp             SEEEETTCT---THHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTE------------EEEEEESEEEECS
T ss_pred             cEEeecCCH---HHHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCe------------EEEEECCEEEECC
Confidence            455555553   4677777665432  7899999999999998999998876510            1279999999999


Q ss_pred             CCC
Q 023079          112 GLS  114 (287)
Q Consensus       112 G~~  114 (287)
                      .++
T Consensus       293 p~~  295 (489)
T 2jae_A          293 PPH  295 (489)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.94  E-value=0.071  Score=49.81  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCcee-EecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELT-LIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~-i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++++++++|++++.+++ .+.|++++|.               + +.+|.||+|+|...+.
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR---------------IYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSC---------------EEEEESEEEECCCBCCTT
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCc---------------EEEECCEEEECCCCCcCC
Confidence            35667777888999999999999999987643 4778888772               5 9999999999986554

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.94  E-value=0.028  Score=52.58  Aligned_cols=56  Identities=11%  Similarity=0.022  Sum_probs=45.6

Q ss_pred             HHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079           52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF  122 (287)
Q Consensus        52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~  122 (287)
                      +.++++|++|+++++|+++..+++...|++.+|.               ++.||.||+|+|.+.+. +++.+
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~---------------~i~aD~Vv~a~G~~p~~~l~~~~  321 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNH---------------EYKVDALIFADGRRPDINPITQA  321 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCC---------------EEECSEEEECCCEEECCHHHHHT
T ss_pred             HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCe---------------EEEeCEEEECCCcCcCchHHHhc
Confidence            5677889999999999999865444457777772               79999999999999775 77777

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.93  E-value=0.046  Score=50.24  Aligned_cols=59  Identities=17%  Similarity=0.035  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEe---CCeE--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLE---GNCM--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~---~~~~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ..+...+...+++.|++++++++|++++..   ++.|  .|++.+|.           +++.++++|+||+|+|.
T Consensus       127 ~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~-----------g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          127 MEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD-----------GEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT-----------SCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC-----------CceEEEEeCEEEECCCC
Confidence            344455555566779999999999999876   4444  67777662           22347999999999997

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.85  E-value=0.059  Score=49.89  Aligned_cols=60  Identities=10%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+...+.+.+++.|++++.+++|++++.+++.+.|+..++.+            +.++.+|.||+|+|...
T Consensus       221 ~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g------------~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          221 EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEG------------EKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSE------------EEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCC------------cEEEECCEEEEeeCCcc
Confidence            4567777788889999999999999999887777776655411            12799999999999754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=94.73  E-value=0.045  Score=51.74  Aligned_cols=65  Identities=17%  Similarity=0.048  Sum_probs=45.6

Q ss_pred             HHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeE---ecCEEEEcCCCC-chHHHHH
Q 023079           48 LSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTL---IPKLVVNSAGLS-APALAKR  121 (287)
Q Consensus        48 ~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i---~a~~VV~aaG~~-s~~l~~~  121 (287)
                      .++++.+.+ .|+++++++.|+.|..+++++ .|+..+..+++          +.++   .++.||+|+|+| +++|+..
T Consensus       199 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~----------~~~~~v~~~~~VIlaaG~~~sp~lL~~  268 (546)
T 1kdg_A          199 ATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGP----------NGFIPVTPKGRVILSAGAFGTSRILFQ  268 (546)
T ss_dssp             HTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSG----------GGEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCc----------eeEEEEEeCCEEEEcCChhcCHHHHHH
Confidence            446666665 589999999999999887665 47665411111          1123   899999999997 5677766


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      .
T Consensus       269 s  269 (546)
T 1kdg_A          269 S  269 (546)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.72  E-value=0.063  Score=49.43  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++.+++|++++.+++++.|++. +|. +            .++.+|.||+|+|...+
T Consensus       211 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~-~------------~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          211 KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGE-T------------KTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTE-E------------EEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCc-e------------eEEEcCEEEECcCCCcc
Confidence            456677777888999999999999999887777766654 221 1            27999999999998654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.68  E-value=0.048  Score=50.67  Aligned_cols=59  Identities=14%  Similarity=0.056  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC----CcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE----SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~----g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++|+++++|.+++.+++.+.|++.+    |   +            ++.+|.||+|+|...+.
T Consensus       226 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g---~------------~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          226 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPK---E------------PQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCS---S------------CEEESCEEECCCEEECG
T ss_pred             HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCc---e------------EEEcCEEEECcCCCcCC
Confidence            3556667777888999999999999998877777777665    4   2            68999999999987553

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.68  E-value=0.082  Score=49.17  Aligned_cols=65  Identities=18%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      +..+...+.+.+++.|++++.+++|+++...++.+.|++.+..+          ++..++.+|.||+|+|...+.
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~----------g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKG----------GEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTS----------CCCEEEEESEEEECCCCEECC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCC----------CceEEEEcCEEEEeeCCccCC
Confidence            34566777788889999999999999999888877766553110          012379999999999976443

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=94.64  E-value=0.034  Score=52.18  Aligned_cols=65  Identities=15%  Similarity=0.055  Sum_probs=45.7

Q ss_pred             HHHHHHHHHCC-cEEEcCceeEEEEEeC-C-eE-EEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCC-chHHHH
Q 023079           48 LSLVGEAENHG-TTFSNNTSVIGGHLEG-N-CM-NVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAK  120 (287)
Q Consensus        48 ~~l~~~a~~~G-v~~~~~~~V~~i~~~~-~-~~-~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~-s~~l~~  120 (287)
                      .+++..+++.| ++|++++.|+.|..++ + .+ .|+..  +|..          ++..+++|+.||+|||++ +++|+.
T Consensus       225 ~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~----------~~~~~v~A~~VIlaaG~~~s~~lL~  294 (504)
T 1n4w_A          225 KTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKL----------LATKEISCRYLFLGAGSLGSTELLV  294 (504)
T ss_dssp             TTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCE----------EEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcc----------ceeEEEeeCEEEEccCCCCCHHHHH
Confidence            44556666675 9999999999998874 3 33 46553  3310          013479999999999998 777766


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      ..
T Consensus       295 ~S  296 (504)
T 1n4w_A          295 RA  296 (504)
T ss_dssp             HH
T ss_pred             hc
Confidence            55

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.58  E-value=0.13  Score=47.14  Aligned_cols=50  Identities=10%  Similarity=0.066  Sum_probs=39.1

Q ss_pred             CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           57 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        57 ~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .|++++.+++|+++..+++++.|++.+..+          ++..++.+|.||+|+|.-..
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~----------g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGS----------GELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTT----------CCEEEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCC----------CCeEEEECCEEEEeeCCCCC
Confidence            599999999999999888888887762211          12346999999999998655

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.51  E-value=0.088  Score=48.73  Aligned_cols=61  Identities=15%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEE--eCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHL--EGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~--~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ..+...+.+.++++|++|+++++|+++..  +++.+.|++.   +|.             ..++.+|.||+|+|...+.
T Consensus       224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~-------------~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNK-------------QENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTE-------------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCC-------------ceEEECCEEEECCCCCcCC
Confidence            45667777888899999999999999987  5556666654   120             1279999999999976543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.48  E-value=0.074  Score=48.82  Aligned_cols=57  Identities=19%  Similarity=0.206  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.+++.|++++++++|+++..++..+.|.++++                ++++|.||+|+|...+
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~----------------~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKN----------------AYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSC----------------EEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECCC----------------EEECCEEEECcCCCCC
Confidence            45677788888899999999999999986532235666433                7999999999998765

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.46  E-value=0.082  Score=48.76  Aligned_cols=60  Identities=15%  Similarity=0.163  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++.+++|++++.+++.+.|++. +|.             ..++.+|.||+|+|...+
T Consensus       212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~-------------~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          212 ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGV-------------AQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSC-------------EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCc-------------eEEEEcCEEEECCCCCcc
Confidence            355666777888899999999999999877666766654 441             137999999999997654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.42  E-value=0.018  Score=52.07  Aligned_cols=52  Identities=6%  Similarity=0.035  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .+...+.+.++++|++++.+++|++++.++.  .|++++|.               ++.+|++|+|+|+
T Consensus        63 ~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~---------------~~~yd~lvlAtG~  114 (385)
T 3klj_A           63 DILIKKNDWYEKNNIKVITSEFATSIDPNNK--LVTLKSGE---------------KIKYEKLIIASGS  114 (385)
T ss_dssp             GTBSSCHHHHHHTTCEEECSCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCE
T ss_pred             HccCCCHHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCC---------------EEECCEEEEecCC
Confidence            3333344556778999999999999987655  46777773               7999999999996

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=94.22  E-value=0.057  Score=48.86  Aligned_cols=60  Identities=7%  Similarity=-0.012  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      ..+...+.+.+++.|++++++++|++++.  ++  |++++|.               ++.+|.||+|+|...+.+++.+
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~~g~---------------~~~~D~vi~a~G~~~~~~l~~~  277 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE--IVDEKGN---------------TIPADITILLPPYTGNPALKNS  277 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--SE--EEETTSC---------------EEECSEEEEECCEECCHHHHTS
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce--EEECCCC---------------EEeeeEEEECCCCCccHHHHhc
Confidence            56778888888999999999999988854  33  6777773               7999999999999888776544

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=94.17  E-value=0.05  Score=51.07  Aligned_cols=65  Identities=12%  Similarity=0.049  Sum_probs=46.0

Q ss_pred             HHHHHHHHHCC-cEEEcCceeEEEEEeC-C-eE-EEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCC-chHHHH
Q 023079           48 LSLVGEAENHG-TTFSNNTSVIGGHLEG-N-CM-NVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAK  120 (287)
Q Consensus        48 ~~l~~~a~~~G-v~~~~~~~V~~i~~~~-~-~~-~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~-s~~l~~  120 (287)
                      .+++..|++.| ++|++++.|+.|..++ + .+ .|+..  +|..          ++..+++|+.||+|||++ +++|+.
T Consensus       230 ~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~----------~~~~~~~A~~VIlaaGa~~sp~lL~  299 (507)
T 1coy_A          230 KTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNV----------VATKVVTADRVFFAAGSVGTSKLLV  299 (507)
T ss_dssp             TTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCE----------EEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcc----------cccEEEEeCEEEEccCccCCHHHHH
Confidence            45566666664 9999999999998875 3 33 46553  3310          013479999999999998 777776


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      ..
T Consensus       300 ~S  301 (507)
T 1coy_A          300 SM  301 (507)
T ss_dssp             HH
T ss_pred             hc
Confidence            55

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=94.00  E-value=0.18  Score=47.78  Aligned_cols=56  Identities=14%  Similarity=0.073  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..+...+.+.+++.|+++++++.|..+...++.+.|.+.++.               ++.+|.|++|+|--
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~---------------~~~~D~vLvAvGR~  318 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKT---------------SELYDTVLYAIGRK  318 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECSCEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCC---------------eEEEEEEEEccccc
Confidence            356677888889999999999999999999888888887773               78899999999964

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.99  E-value=0.082  Score=48.77  Aligned_cols=60  Identities=18%  Similarity=0.286  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++.+++|.++..+++++.|++.   +|.             ..++.+|.||+|+|...+
T Consensus       218 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~-------------~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          218 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGE-------------QTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCC-------------CEEEEESEEECCCCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCc-------------ceEEECCEEEECCCCCcC
Confidence            456677788889999999999999999876666666654   331             137999999999998754

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=93.98  E-value=0.073  Score=52.73  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=37.7

Q ss_pred             CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           57 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        57 ~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .|++|+++++|++|..++++|.|++.+|.               +++||+||+|+.+
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~---------------~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGT---------------GYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCC---------------EEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCc---------------EEEcCEEEECCCH
Confidence            48899999999999998888999998883               7999999999975

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.93  E-value=0.12  Score=47.93  Aligned_cols=62  Identities=13%  Similarity=0.115  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+...+.+.++++|++|+.+++|.++...++ .+.|++.++.+          ++..++.+|.||+|+|...
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~----------~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVET----------GEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTT----------CCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCC----------CceeEEEcCEEEECccccc
Confidence            45667777888899999999999999987654 46677665521          1234799999999999753

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=93.89  E-value=0.048  Score=51.07  Aligned_cols=57  Identities=11%  Similarity=0.011  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++.+|++.+.  +++|+.+++|++|... ++.+.|++.+|.               +++||+||+|++++..
T Consensus       201 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~v~v~~~~g~---------------~~~ad~VI~t~p~~~l  258 (516)
T 1rsg_A          201 YDSVVQRIAQSFP--QNWLKLSCEVKSITREPSKNVTVNCEDGT---------------VYNADYVIITVPQSVL  258 (516)
T ss_dssp             HHHHHHHHHTTSC--GGGEETTCCEEEEEECTTSCEEEEETTSC---------------EEEEEEEEECCCHHHH
T ss_pred             HHHHHHHHHHhCC--CCEEEECCEEEEEEEcCCCeEEEEECCCc---------------EEECCEEEECCCHHHh
Confidence            3444454443321  3679999999999986 567899998882               6999999999987543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.87  E-value=0.21  Score=43.33  Aligned_cols=65  Identities=12%  Similarity=0.016  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAK  120 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~  120 (287)
                      .+...+.+.+++.|++++.+++|.++..+++...|++.   +|.             ..++.+|.||+|+|.... .+++
T Consensus       192 ~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~-------------~~~i~~D~vi~a~G~~p~~~~l~  258 (335)
T 2zbw_A          192 ASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQE-------------ELALEVDAVLILAGYITKLGPLA  258 (335)
T ss_dssp             HHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCC-------------EEEEECSEEEECCCEEEECGGGG
T ss_pred             HHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCc-------------eEEEecCEEEEeecCCCCchHhh
Confidence            45666777778889999999999999875432245544   441             237999999999998765 3444


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       259 ~~  260 (335)
T 2zbw_A          259 NW  260 (335)
T ss_dssp             GS
T ss_pred             hc
Confidence            33

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=93.79  E-value=0.2  Score=44.61  Aligned_cols=68  Identities=10%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeC-----------------C--eE-EEEec------CCcccccCCCCC
Q 023079           42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEG-----------------N--CM-NVYIS------ESKNLRNWDGVS   94 (287)
Q Consensus        42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~-----------------~--~~-~V~t~------~g~~~~~~~~~~   94 (287)
                      +...++..|.+.+.+ .|+++++++.|+++..++                 +  ++ .|.+.      .+.       +.
T Consensus       158 ~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~-------~~  230 (344)
T 3jsk_A          158 HAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHD-------DQ  230 (344)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSS-------SS
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCC-------cc
Confidence            467888999999988 499999999999998765                 2  33 24331      220       00


Q ss_pred             CCCCceeEecCEEEEcCCCCch
Q 023079           95 PLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        95 ~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ....+.+|+|+.||+|+|..+.
T Consensus       231 ~~~d~~~i~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          231 SAMDPNTINAPVIISTTGHDGP  252 (344)
T ss_dssp             SCCBCEEEECSEEEECCCSSSS
T ss_pred             cccCceEEEcCEEEECCCCCch
Confidence            0112458999999999999876

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.73  E-value=0.087  Score=48.86  Aligned_cols=57  Identities=11%  Similarity=0.077  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..++.+|++.+.   .+++.+++|++|..++++|.|++.+|..           ...+++||+||+|++.+
T Consensus       241 ~~l~~~l~~~l~---~~i~~~~~V~~I~~~~~~v~v~~~~~~~-----------~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          241 DKLPTAMYRDIQ---DKVHFNAQVIKIQQNDQKVTVVYETLSK-----------ETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             THHHHHHHHHTG---GGEESSCEEEEEEECSSCEEEEEECSSS-----------CCCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcc---cccccCCEEEEEEECCCeEEEEEecCCc-----------ccceEEeCEEEECCChH
Confidence            356666665443   3799999999999988889998877621           01148999999999975

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.56  E-value=0.16  Score=48.36  Aligned_cols=62  Identities=15%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~  122 (287)
                      ..+...+.+.+++.|++++.+++|++++.+++.  |++.+|.               ++.+|.||+|+|...+. +++.+
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~---------------~i~~D~Vi~a~G~~p~~~~l~~~  290 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGS---------------VIQTDMLILAIGVQPESSLAKGA  290 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSC---------------EEECSEEEECSCEEECCHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCC---------------EEEcCEEEEccCCCCChHHHHhc
Confidence            566777888889999999999999999765553  6666662               79999999999987653 55554

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=93.55  E-value=0.09  Score=49.29  Aligned_cols=65  Identities=15%  Similarity=0.047  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR  121 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~  121 (287)
                      ..+...+.+.++++|++++++++|++++.  +.+  .+.+.+|..           ...+|.||.||.|+|.-.+.+...
T Consensus       272 ~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~-----------~~~~i~ad~viwa~Gv~~~~~~~~  338 (502)
T 4g6h_A          272 KKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKI-----------TEETIPYGTLIWATGNKARPVITD  338 (502)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCE-----------EEEEEECSEEEECCCEECCHHHHH
T ss_pred             HHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCccc-----------ceeeeccCEEEEccCCcCCHHHHh
Confidence            56677777888999999999999988853  444  345556621           113699999999999876654433

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.51  E-value=0.21  Score=46.23  Aligned_cols=63  Identities=13%  Similarity=0.042  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCc--eeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPE--LTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~--~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.+++.|++++.+++|++++..+++  +.|++.+...+          +.  .++.+|.||+|+|...+
T Consensus       228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g----------~~~g~~~~~D~vi~a~G~~p~  294 (478)
T 3dk9_A          228 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRL----------PVMTMIPDVDCLLWAIGRVPN  294 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSC----------CEEEEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCC----------cccceEEEcCEEEEeeccccC
Confidence            456677778888999999999999999876554  56777652110          11  37999999999997544

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=93.51  E-value=0.13  Score=48.12  Aligned_cols=58  Identities=10%  Similarity=-0.050  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHCCcEEEcCceeEEEEEeC--------CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           46 LMLSLVGEAENHGTTFSNNTSVIGGHLEG--------NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--------~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +..-|...|++.+..++++++|++++...        +.|.|++.++.+          ++..+++|++||+|+|.
T Consensus       147 ~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~----------g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          147 FEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVET----------GEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTT----------CCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCC----------ceEEEEEeCEEEECcCC
Confidence            33434445566677788999999998743        248899877643          33567999999999994

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=93.50  E-value=0.18  Score=43.45  Aligned_cols=59  Identities=7%  Similarity=0.099  Sum_probs=43.2

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +.+..+...+.+++.+.+...+....+..+...+ +.+.|.+.+|.               ++++|+||+|+|+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~---------------~~~a~~liiATGs~  116 (304)
T 4fk1_A           57 IKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHT---------------KYLAERVLLATGMQ  116 (304)
T ss_dssp             BCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCC---------------EEEEEEEEECCCCE
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCC---------------EEEeCEEEEccCCc
Confidence            5677888777777777765444445566665544 46788888883               89999999999974

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=93.32  E-value=0.24  Score=42.49  Aligned_cols=60  Identities=18%  Similarity=0.116  Sum_probs=43.9

Q ss_pred             HHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecC---CcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           50 LVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        50 l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      +.+.+.+ .|++++.+++|+++..+++...|++.+   |             ++.++.+|.||+|+|...+ .+++.+
T Consensus       195 ~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g-------------~~~~~~~D~vv~a~G~~p~~~~~~~~  259 (323)
T 3f8d_A          195 YVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTG-------------EIKELNVNGVFIEIGFDPPTDFAKSN  259 (323)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTC-------------CEEEEECSEEEECCCEECCHHHHHHT
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCC-------------ceEEEEcCEEEEEECCCCChhHHhhc
Confidence            3444444 499999999999998765444566654   4             1346999999999998877 666665

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.10  E-value=0.17  Score=47.05  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.+++.|++++++++|+++.. ++++ .|.+ +|.               ++.+|.||+|+|...+
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~---------------~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKN---------------EYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSC---------------EEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCc---------------EEECCEEEECCCCCcC
Confidence            45667777888899999999999999976 3444 3666 442               7999999999997544

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.85  E-value=0.14  Score=47.25  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++++.+++|++++. + .+.|++.+|.             +.++.+|.||+|+|...+
T Consensus       212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~-~v~v~~~~G~-------------~~~i~~D~vv~a~G~~p~  269 (458)
T 1lvl_A          212 SELTAPVAESLKKLGIALHLGHSVEGYEN-G-CLLANDGKGG-------------QLRLEADRVLVAVGRRPR  269 (458)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEET-T-EEEEECSSSC-------------CCEECCSCEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEe-C-CEEEEECCCc-------------eEEEECCEEEECcCCCcC
Confidence            45666777788889999999999999976 4 3666643441             127999999999997654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.80  E-value=0.22  Score=43.10  Aligned_cols=59  Identities=19%  Similarity=0.208  Sum_probs=40.6

Q ss_pred             HHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           48 LSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        48 ~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+.+.+.+. |++|+.+++|.++..+++++. |++.+..+          ++..++.+|.||+|+|....
T Consensus       212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~----------g~~~~i~~D~vi~a~G~~p~  272 (338)
T 3itj_A          212 TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKK----------NEETDLPVSGLFYAIGHTPA  272 (338)
T ss_dssp             HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTT----------TEEEEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCC----------CceEEEEeCEEEEEeCCCCC
Confidence            3445555555 999999999999988766443 65544110          01237999999999997544

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.77  E-value=0.22  Score=42.59  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=46.6

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+.+..+...+.+.+++.|++++.+ +|+++ .++  +.|.|....+              . ++++|+||+|+|..
T Consensus        58 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~--------------~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           58 VMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGG--------------K-TELAKAVIVCTGSA  117 (315)
T ss_dssp             CBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTS--------------C-EEEEEEEEECCCEE
T ss_pred             CCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecC--------------C-EEEeCEEEEeeCCC
Confidence            5678889999999999999999987 89999 776  6788533333              1 69999999999973

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.65  E-value=0.28  Score=42.30  Aligned_cols=55  Identities=11%  Similarity=-0.017  Sum_probs=39.9

Q ss_pred             HHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           51 VGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+.+++.|++++.+++|.++..+++...|++.++..          ++..++.+|.||+|+|.-.
T Consensus       196 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~----------g~~~~~~~D~vv~a~G~~p  250 (332)
T 3lzw_A          196 VENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKG----------DRKEILEIDDLIVNYGFVS  250 (332)
T ss_dssp             HHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTS----------CCEEEEECSEEEECCCEEC
T ss_pred             HHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCC----------CceEEEECCEEEEeeccCC
Confidence            345678999999999999998766544565554211          1134799999999999755

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=92.63  E-value=0.38  Score=42.46  Aligned_cols=32  Identities=9%  Similarity=0.035  Sum_probs=28.0

Q ss_pred             cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEe
Q 023079           42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLE   73 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~   73 (287)
                      +...+...|.+.+.+. |++++++++|+++..+
T Consensus       144 ~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~  176 (326)
T 2gjc_A          144 HAALFISTVLSKVLQLPNVKLFNATCVEDLVTR  176 (326)
T ss_dssp             CHHHHHHHHHHHHHTSTTEEEETTEEEEEEEEC
T ss_pred             chHHHHHHHHHHHHHhcCcEEEecceeeeeeec
Confidence            5678889999888885 9999999999999876

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.56  E-value=0.23  Score=43.77  Aligned_cols=64  Identities=13%  Similarity=0.059  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHH
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAK  120 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~  120 (287)
                      .+...+.+..++.|++++.+++|+++..+++++ .|++  .+|.             +..+.+|.||+|+|...+. +++
T Consensus       203 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~-------------~~~i~~D~vi~a~G~~p~~~~l~  269 (360)
T 3ab1_A          203 KTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGS-------------KWTVEADRLLILIGFKSNLGPLA  269 (360)
T ss_dssp             HHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCC-------------EEEEECSEEEECCCBCCSCGGGG
T ss_pred             HHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCC-------------eEEEeCCEEEECCCCCCCHHHHH
Confidence            455666677788899999999999998876654 3444  3551             2379999999999976542 444


Q ss_pred             H
Q 023079          121 R  121 (287)
Q Consensus       121 ~  121 (287)
                      .
T Consensus       270 ~  270 (360)
T 3ab1_A          270 R  270 (360)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.54  E-value=0.31  Score=42.84  Aligned_cols=61  Identities=8%  Similarity=0.068  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCCchH-HHH
Q 023079           45 SLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLSAPA-LAK  120 (287)
Q Consensus        45 ~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~~s~~-l~~  120 (287)
                      .+...+.+..++.| ++++.+++|.+++.+++.+.|++.+|.               ++ .+|.||+|+|.-.+. ++.
T Consensus       215 ~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~d~vi~a~G~~~~~~~~~  278 (369)
T 3d1c_A          215 YTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQ---------------SVHTPHEPILATGFDATKNPIV  278 (369)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSC---------------CEEESSCCEECCCBCGGGSHHH
T ss_pred             HHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCe---------------EeccCCceEEeeccCCccchhh
Confidence            44455666667787 999999999999877777788888872               45 469999999987665 443

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=92.34  E-value=0.089  Score=48.14  Aligned_cols=60  Identities=15%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      |..++..+...+.+.+++.|++++. .+|++++.+++  .|++++|.               ++.+|+||+|+|....
T Consensus        54 g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~---------------~i~~d~lviAtG~~~~  113 (437)
T 3sx6_A           54 GWKERDDIAFPIRHYVERKGIHFIA-QSAEQIDAEAQ--NITLADGN---------------TVHYDYLMIATGPKLA  113 (437)
T ss_dssp             TSSCHHHHEEECHHHHHTTTCEEEC-SCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCCEEC
T ss_pred             CccCHHHHHHHHHHHHHHCCCEEEE-eEEEEEEcCCC--EEEECCCC---------------EEECCEEEECCCCCcC
Confidence            3456667777777778889999985 68999977655  57777772               6999999999998654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=92.23  E-value=0.37  Score=41.58  Aligned_cols=55  Identities=18%  Similarity=0.122  Sum_probs=39.9

Q ss_pred             HHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           49 SLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+.+.+.+.|++++.+++|+++..+++++ .|+..   +|             ++.++.+|.||+|+|.-.+
T Consensus       195 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p~  253 (319)
T 3cty_A          195 AYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTG-------------EEKLIETDGVFIYVGLIPQ  253 (319)
T ss_dssp             HHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTC-------------CEEEECCSEEEECCCEEEC
T ss_pred             HHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCC-------------ceEEEecCEEEEeeCCccC
Confidence            34556678899999999999998765533 34443   44             1236999999999997654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=92.20  E-value=0.38  Score=41.15  Aligned_cols=56  Identities=9%  Similarity=0.020  Sum_probs=39.0

Q ss_pred             HHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           50 LVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        50 l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +.+.+++ .|++++.+++|+++..+++++ .|++.++.+          +++.++.+|.||+|+|.-.
T Consensus       185 ~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~----------g~~~~i~~D~vi~a~G~~p  242 (310)
T 1fl2_A          185 LQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVS----------GDIHNIELAGIFVQIGLLP  242 (310)
T ss_dssp             HHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTT----------CCEEEEECSEEEECSCEEE
T ss_pred             HHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCC----------CcEEEEEcCEEEEeeCCcc
Confidence            4445566 699999999999998765554 355543211          1234799999999999654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=92.03  E-value=0.098  Score=48.46  Aligned_cols=61  Identities=15%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      ...++.+|++.+.+.|++++.+++|++|..+++.  |++.+|.               +++||+||.+.-+  ..+.+.+
T Consensus       221 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~---------------~~~ad~vI~t~P~--~~l~~~l  281 (513)
T 4gde_A          221 TGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGT---------------TIGYKKLVSTMAV--DFLAEAM  281 (513)
T ss_dssp             HHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSC---------------EEEEEEEEECSCH--HHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCC---------------EEECCEEEECCCH--HHHHHhc
Confidence            3678888988888899999999999999887665  4567773               8999999988764  4555555

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=91.88  E-value=0.085  Score=49.86  Aligned_cols=60  Identities=17%  Similarity=0.091  Sum_probs=42.5

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCC---eE-EEEec--CCcccccCCCCCCCCCceeE---ecCEEEEcCCCC-chHHH
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGN---CM-NVYIS--ESKNLRNWDGVSPLQPELTL---IPKLVVNSAGLS-APALA  119 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~---~~-~V~t~--~g~~~~~~~~~~~~~~~~~i---~a~~VV~aaG~~-s~~l~  119 (287)
                      |...+++.|+++++++.|+.|..+++   ++ .|+..  +|             +.+++   .++.||+|||++ +++|+
T Consensus       200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g-------------~~~~~~v~a~k~VILaaGa~~sp~lL  266 (536)
T 1ju2_A          200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNG-------------TPHQAFVRSKGEVIVSAGTIGTPQLL  266 (536)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTS-------------CEEEEEEEEEEEEEECCHHHHHHHHH
T ss_pred             hhhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCC-------------ceEEEEeccCCEEEEcCcccCCHHHH
Confidence            44445677999999999999988753   43 36553  34             12345   579999999997 67776


Q ss_pred             HHh
Q 023079          120 KRF  122 (287)
Q Consensus       120 ~~~  122 (287)
                      ...
T Consensus       267 ~~S  269 (536)
T 1ju2_A          267 LLS  269 (536)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            655

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=91.71  E-value=0.44  Score=44.32  Aligned_cols=59  Identities=14%  Similarity=0.084  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.+++. ++++.+++|.+++.+++++.|++.  +|.             +.++.+|.||+|+|...+
T Consensus       215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~-------------~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQ-------------KTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCC-------------EEEEEESEEEECSCCEES
T ss_pred             HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCc-------------eEEEECCEEEEeeCCccC
Confidence            45666676777777 999999999999888777777664  441             237999999999997644

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=91.70  E-value=0.46  Score=40.68  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=45.9

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +++..++..+.+.+++.+.++... .|.......+...+.+.++.               ++++|+||+|+|+.
T Consensus        63 i~~~~l~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~---------------~~~~~~liiATG~~  120 (314)
T 4a5l_A           63 IDGNELMMNMRTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGK---------------EVLTKSVIIATGAT  120 (314)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCC---------------EEEEEEEEECCCEE
T ss_pred             CCHHHHHHHHHHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCe---------------EEEEeEEEEccccc
Confidence            677889998989999999998865 46566655566667777663               89999999999974

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=91.66  E-value=0.46  Score=40.53  Aligned_cols=49  Identities=14%  Similarity=0.033  Sum_probs=37.1

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ++.|++|+.+++|.++..+++++. |+..  +|.             +.++.+|.||+|+|.-.+
T Consensus       194 ~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~-------------~~~~~~D~vv~a~G~~p~  245 (315)
T 3r9u_A          194 KNEKIELITSASVDEVYGDKMGVAGVKVKLKDGS-------------IRDLNVPGIFTFVGLNVR  245 (315)
T ss_dssp             HCTTEEEECSCEEEEEEEETTEEEEEEEECTTSC-------------EEEECCSCEEECSCEEEC
T ss_pred             hcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCC-------------eEEeecCeEEEEEcCCCC
Confidence            577999999999999988775542 4443  551             347999999999997543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.54  E-value=0.17  Score=46.47  Aligned_cols=51  Identities=14%  Similarity=0.059  Sum_probs=39.7

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +.+.+++.|++++.+++|+++..+++.+.++...+              ..++++|++|+|+|..
T Consensus        64 ~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~--------------~~~~~~d~lviAtG~~  114 (452)
T 3oc4_A           64 TEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEE--------------QQWYSYDKLILATGAS  114 (452)
T ss_dssp             CHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTE--------------EEEEECSEEEECCCCC
T ss_pred             CHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCc--------------eEEEEcCEEEECCCcc
Confidence            44556778999999999999988877887752222              1279999999999984

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=91.53  E-value=0.39  Score=44.49  Aligned_cols=62  Identities=18%  Similarity=0.051  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+...+.+.++++|++++.++.|.++...+ +.+.|+..+..++          ++.++.+|.||+|+|.-.
T Consensus       225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g----------~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASG----------KEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTT----------EEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCC----------eeEEEECCEEEEcccCCc
Confidence            4566777788889999999999999998743 4566665442111          123589999999999753

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=91.01  E-value=0.29  Score=45.21  Aligned_cols=50  Identities=14%  Similarity=0.086  Sum_probs=36.8

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCcee------EecCEEEEcCCCCc
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELT------LIPKLVVNSAGLSA  115 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~------i~a~~VV~aaG~~s  115 (287)
                      +...+++.|++++.++.+..   +.+.+.|.+.+|.             ..+      +++|+||+|+|++.
T Consensus       102 ~~~~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~-------------~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A          102 IELLFKKNKVTYYKGNGSFE---DETKIRVTPVDGL-------------EGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             HHHHHHHTTCEEEESEEEES---SSSEEEEECCTTC-------------TTCCSSCEEEEEEEEEECCCEEE
T ss_pred             HHHHHHhCCCEEEEEEEEEc---cCCeEEEEecCCC-------------cccccccceEEeCEEEECcCCCC
Confidence            44556778999999887642   4457888876661             014      99999999999876

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=90.78  E-value=0.31  Score=47.19  Aligned_cols=48  Identities=15%  Similarity=0.106  Sum_probs=36.6

Q ss_pred             CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           58 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        58 Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +.+++.+++|++|...++++.|++.++.+         .+...+++||+||+|....
T Consensus       410 ~l~I~l~~~V~~I~~~~~~v~V~~~~~~~---------~~~~~~~~Ad~VI~tvP~~  457 (662)
T 2z3y_A          410 GLDIKLNTAVRQVRYTASGCEVIAVNTRS---------TSQTFIYKCDAVLCTLPLG  457 (662)
T ss_dssp             TCEEETTEEEEEEEEETTEEEEEEEESSC---------TTCEEEEEESEEEECCCHH
T ss_pred             cCceecCCeEEEEEECCCcEEEEEeeccc---------CCCCeEEEeCEEEECCCHH
Confidence            67999999999999998899988765100         0011379999999999853

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.76  E-value=0.55  Score=43.00  Aligned_cols=50  Identities=14%  Similarity=0.132  Sum_probs=36.9

Q ss_pred             HHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           49 SLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+...++++|++++.++.+. +  +.+.+.|++.+|.              .++++|+||+|+|...
T Consensus        96 ~~~~~~~~~gv~~~~g~~~~-i--d~~~v~V~~~~G~--------------~~i~~d~lViATGs~p  145 (455)
T 1ebd_A           96 GVEGLLKGNKVEIVKGEAYF-V--DANTVRVVNGDSA--------------QTYTFKNAIIATGSRP  145 (455)
T ss_dssp             HHHHHHHTTTCEEEESEEEE-E--ETTEEEEEETTEE--------------EEEECSEEEECCCEEE
T ss_pred             HHHHHHHhCCCEEEEEEEEE-c--cCCeEEEEeCCCc--------------EEEEeCEEEEecCCCC
Confidence            34456677899999887653 3  4567888887661              2799999999999753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=90.68  E-value=0.32  Score=45.05  Aligned_cols=61  Identities=15%  Similarity=0.202  Sum_probs=36.4

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +...++++|++++.++.+.   .+++.+.|.+.+|..+.   .....+++.++++|+||+|+|.+..
T Consensus       101 ~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~---~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A          101 LAGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYE---QAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETT---EEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccc---cccccCcceEEEcCEEEECCCCCCC
Confidence            4455677899999887654   34567777765440000   0000000137999999999998743

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=90.47  E-value=0.16  Score=49.45  Aligned_cols=59  Identities=12%  Similarity=-0.036  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+.++++|++|+++++|+++..  ++..++......            ..++.||.||+|+|...+
T Consensus       567 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~v~~~~~~~------------~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          567 TFEVNRIQRRLIENGVARVTDHAVVAVGA--GGVTVRDTYASI------------ERELECDAVVMVTARLPR  625 (690)
T ss_dssp             GTCHHHHHHHHHHTTCEEEESEEEEEEET--TEEEEEETTTCC------------EEEEECSEEEEESCEEEC
T ss_pred             chhHHHHHHHHHHCCCEEEcCcEEEEEEC--CeEEEEEccCCe------------EEEEECCEEEECCCCCCC
Confidence            34456677788899999999999998864  444444321100            137999999999998654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=90.47  E-value=0.15  Score=45.84  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=45.9

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      .++.|++++.++++..++.+++...|++++|.               ++.+|.|++|+|.-.+.+++..
T Consensus       212 l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~---------------~i~~D~vi~~~g~~~~~~~~~~  265 (401)
T 3vrd_B          212 TENALIEWHPGPDAAVVKTDTEAMTVETSFGE---------------TFKAAVINLIPPQRAGKIAQSA  265 (401)
T ss_dssp             STTCSEEEECTTTTCEEEEETTTTEEEETTSC---------------EEECSEEEECCCEEECHHHHHT
T ss_pred             HHhcCcEEEeCceEEEEEecccceEEEcCCCc---------------EEEeeEEEEecCcCCchhHhhc
Confidence            35679999999999999887777788998883               7999999999998888887766

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=90.47  E-value=0.4  Score=43.74  Aligned_cols=47  Identities=15%  Similarity=0.134  Sum_probs=37.4

Q ss_pred             HHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +.++++|++++.+++|+.+..++.  .|++.+|.               ++++|+||+|+|...
T Consensus        68 ~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~---------------~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           68 DAYAAQNIQLLGGTQVTAINRDRQ--QVILSDGR---------------ALDYDRLVLATGGRP  114 (431)
T ss_dssp             HHHHHTTEEEECSCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEEE
T ss_pred             HHHHhCCCEEEeCCEEEEEECCCC--EEEECCCC---------------EEECCEEEEcCCCCc
Confidence            445678999999999999987554  46666662               799999999999854

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=90.43  E-value=0.46  Score=43.43  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHH
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKR  121 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~  121 (287)
                      ..+...+.+.++++ ++++.+++|.++..++ ++ .|.++.+                ++.+|.||+|+|...+ .+++.
T Consensus       190 ~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~----------------~i~~D~Vv~a~G~~p~~~l~~~  251 (449)
T 3kd9_A          190 KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAG----------------EYKAELVILATGIKPNIELAKQ  251 (449)
T ss_dssp             HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTE----------------EEECSEEEECSCEEECCHHHHH
T ss_pred             HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCC----------------EEECCEEEEeeCCccCHHHHHh
Confidence            45666777777788 9999999999997654 44 3444333                7999999999999854 56666


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      +
T Consensus       252 ~  252 (449)
T 3kd9_A          252 L  252 (449)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=90.41  E-value=0.042  Score=50.34  Aligned_cols=44  Identities=16%  Similarity=0.114  Sum_probs=35.0

Q ss_pred             HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .++++|++|+.+ +|++|+.+++.  |++++|.               ++..|++|+|+|+.
T Consensus        65 ~~~~~gv~~i~~-~v~~Id~~~~~--V~~~~g~---------------~i~YD~LViAtG~~  108 (430)
T 3hyw_A           65 LLPKFNIEFINE-KAESIDPDANT--VTTQSGK---------------KIEYDYLVIATGPK  108 (430)
T ss_dssp             TGGGGTEEEECS-CEEEEETTTTE--EEETTCC---------------EEECSEEEECCCCE
T ss_pred             HHHHCCcEEEEe-EEEEEECCCCE--EEECCCC---------------EEECCEEEEeCCCC
Confidence            345679999865 79999876654  6788873               79999999999974

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=90.40  E-value=0.38  Score=44.19  Aligned_cols=51  Identities=10%  Similarity=0.036  Sum_probs=37.3

Q ss_pred             HHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           49 SLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+.+.+++.|++++.++.+.   .+.+.+.|.+.+|.             ..++++|+||+|+|...
T Consensus        96 ~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~-------------~~~~~~d~lViAtG~~~  146 (464)
T 2a8x_A           96 GVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGG-------------TESVTFDNAIIATGSST  146 (464)
T ss_dssp             HHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSC-------------CEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCc-------------eEEEEcCEEEECCCCCC
Confidence            34556677899999887653   34567888887661             12799999999999865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.28  E-value=0.1  Score=46.76  Aligned_cols=47  Identities=11%  Similarity=-0.057  Sum_probs=35.3

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +.+.+++.|++++.+++|+.+..+.  +.|+ .+|.               ++++|++|+|+|+.
T Consensus        66 ~~~~~~~~~v~~~~g~~v~~id~~~--~~V~-~~g~---------------~~~~d~lViATGs~  112 (367)
T 1xhc_A           66 SLDWYRKRGIEIRLAEEAKLIDRGR--KVVI-TEKG---------------EVPYDTLVLATGAR  112 (367)
T ss_dssp             CHHHHHHHTEEEECSCCEEEEETTT--TEEE-ESSC---------------EEECSEEEECCCEE
T ss_pred             CHHHHHhCCcEEEECCEEEEEECCC--CEEE-ECCc---------------EEECCEEEECCCCC
Confidence            3444567899999999998887643  4455 4552               79999999999963

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=90.27  E-value=0.61  Score=44.55  Aligned_cols=55  Identities=15%  Similarity=0.070  Sum_probs=40.3

Q ss_pred             HHCCcEEEcCceeEEEEEe----CCeE-EEEec--CCcccccCCCCCCCCCceeEecC-EEEEcCCCC-chHHHHHh
Q 023079           55 ENHGTTFSNNTSVIGGHLE----GNCM-NVYIS--ESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLS-APALAKRF  122 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~----~~~~-~V~t~--~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~-s~~l~~~~  122 (287)
                      .+.+.++++++.|+.|..+    ++++ .|+..  +|             ++++++|+ -||+|||+. +++|+...
T Consensus       238 ~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G-------------~~~~v~A~kEVILsAGa~~SPqLL~lS  301 (583)
T 3qvp_A          238 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKG-------------NTHNVYAKHEVLLAAGSAVSPTILEYS  301 (583)
T ss_dssp             TCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTT-------------CEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             cCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCC-------------cEEEEEECCEEEEeCCccCCHHHHHHc
Confidence            4568999999999999887    4444 36543  34             34678997 599999987 66676555

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.26  E-value=0.33  Score=43.29  Aligned_cols=59  Identities=19%  Similarity=0.255  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF  122 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~  122 (287)
                      ..+...+.+.++++|++++++++|++++  .+  .|++++|                ++.+|.||+|+|...+. +++.+
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~~--~v~~~~g----------------~i~~D~vi~a~G~~p~~~ll~~~  242 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEAN--EE--GVLTNSG----------------FIEGKVKICAIGIVPNVDLARRS  242 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEEC--SS--EEEETTE----------------EEECSCEEEECCEEECCHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEE--ee--EEEECCC----------------EEEcCEEEECcCCCcCHHHHHhC
Confidence            3566677778889999999999999886  23  3667777                59999999999987663 66665

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.12  E-value=0.48  Score=43.55  Aligned_cols=50  Identities=12%  Similarity=0.165  Sum_probs=36.4

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +...++++|++++.++.+.   .+.+.+.|++.+|.             ..++++|+||+|+|...
T Consensus       102 ~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~G~-------------~~~i~~d~lIiAtGs~p  151 (470)
T 1dxl_A          102 IEGLFKKNKVTYVKGYGKF---VSPSEISVDTIEGE-------------NTVVKGKHIIIATGSDV  151 (470)
T ss_dssp             HHHHHHHHTCEEEESCEEE---EETTEEEECCSSSC-------------CEEEECSEEEECCCEEE
T ss_pred             HHHHHHhCCCEEEEeEEEE---ecCCEEEEEeCCCc-------------eEEEEcCEEEECCCCCC
Confidence            3445667799999988663   34567888776661             12799999999999754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=89.95  E-value=0.18  Score=46.32  Aligned_cols=60  Identities=18%  Similarity=0.106  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +..+...+.+.+++.|++++.+++|..+..+++.+.+.+.++.            +..++++|++|+|+|..
T Consensus        57 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g------------~~~~~~~d~lviAtGs~  116 (452)
T 2cdu_A           57 PRGLFYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITN------------EEKTEAYDKLIMTTGSK  116 (452)
T ss_dssp             GGGGBSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTC------------CEEEEECSEEEECCCEE
T ss_pred             HHHhhhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCC------------ceEEEECCEEEEccCCC
Confidence            3333333445566789999889999999877777777653210            01279999999999964

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=89.76  E-value=0.46  Score=40.13  Aligned_cols=57  Identities=7%  Similarity=0.048  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc-hHHHHHh
Q 023079           47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA-PALAKRF  122 (287)
Q Consensus        47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s-~~l~~~~  122 (287)
                      ...+.+.+++.|++++. ++|.++..++   .|++.+|.               ++.+|.||+|+|... ..+++.+
T Consensus       177 ~~~~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~---------------~~~~D~vi~a~G~~p~~~~~~~~  234 (297)
T 3fbs_A          177 DADQHALLAARGVRVET-TRIREIAGHA---DVVLADGR---------------SIALAGLFTQPKLRITVDWIEKL  234 (297)
T ss_dssp             CHHHHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSC---------------EEEESEEEECCEEECCCSCHHHH
T ss_pred             CHHHHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCC---------------EEEEEEEEEccCcccCchhHHhc
Confidence            34566677889999996 8898886432   67777773               799999999999763 2455555

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=89.60  E-value=1.2  Score=38.01  Aligned_cols=54  Identities=13%  Similarity=0.054  Sum_probs=38.7

Q ss_pred             HHHHHH-HCCcEEEcCceeEEEEEeCCeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           50 LVGEAE-NHGTTFSNNTSVIGGHLEGNCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        50 l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +.+.+. +.|++++.+++|.++..+++++ .|++.   +|             ++.++.+|.||+|+|.-.+
T Consensus       184 ~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p~  242 (311)
T 2q0l_A          184 TLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATN-------------EKRELVVPGFFIFVGYDVN  242 (311)
T ss_dssp             HHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTC-------------CEEEEECSEEEECSCEEEC
T ss_pred             HHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCC-------------ceEEEecCEEEEEecCccC
Confidence            444454 4699999999999998775554 35544   44             1246999999999997543

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=89.48  E-value=0.48  Score=43.29  Aligned_cols=51  Identities=16%  Similarity=0.070  Sum_probs=38.5

Q ss_pred             HHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           51 VGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+.+++.|++++.+++|+++..+++.+.+.+ .+|.             ..++++|++|+|+|..
T Consensus        63 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~-------------~~~~~~d~lviAtG~~  114 (447)
T 1nhp_A           63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGE-------------ERVENYDKLIISPGAV  114 (447)
T ss_dssp             HHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCC-------------EEEEECSEEEECCCEE
T ss_pred             HHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCc-------------eEEEeCCEEEEcCCCC
Confidence            3445678999988999999987777777765 3341             1258999999999975

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=89.44  E-value=0.84  Score=40.47  Aligned_cols=50  Identities=10%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             CCcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           57 HGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        57 ~Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      .+.+++++++|++++..+ +.+.|++++|.               +++||.||-|-|.+|.- -+.+
T Consensus       122 ~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~---------------~~~adlvVgADG~~S~v-R~~l  172 (412)
T 4hb9_A          122 LANTIQWNKTFVRYEHIENGGIKIFFADGS---------------HENVDVLVGADGSNSKV-RKQY  172 (412)
T ss_dssp             CTTTEECSCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECCCTTCHH-HHHH
T ss_pred             ccceEEEEEEEEeeeEcCCCeEEEEECCCC---------------EEEeeEEEECCCCCcch-HHHh
Confidence            366789999999998754 46889999983               79999999999999853 3444

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=89.30  E-value=0.35  Score=44.86  Aligned_cols=50  Identities=12%  Similarity=0.139  Sum_probs=37.8

Q ss_pred             HHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           51 VGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+.+++.|++++.+++|+.+..+++.+.|.+ ++.             ..++++|+||+|+|..
T Consensus        99 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~g~-------------~~~~~~d~lviAtG~~  148 (490)
T 2bc0_A           99 KEELESLGAKVYMESPVQSIDYDAKTVTALV-DGK-------------NHVETYDKLIFATGSQ  148 (490)
T ss_dssp             HHHHHHTTCEEETTCCEEEEETTTTEEEEEE-TTE-------------EEEEECSEEEECCCEE
T ss_pred             HHHHHhCCCEEEeCCEEEEEECCCCEEEEEe-CCc-------------EEEEECCEEEECCCCC
Confidence            3445678999999999999987777777653 221             1279999999999964

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=89.19  E-value=1.2  Score=38.28  Aligned_cols=54  Identities=15%  Similarity=-0.044  Sum_probs=37.6

Q ss_pred             HHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           50 LVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        50 l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +.+.+.+ .|++|+.+++|+++..++....|+..   +|             ++.++.+|.||+|+|.-.+
T Consensus       193 ~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p~  250 (325)
T 2q7v_A          193 AQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTG-------------EVSELATDGVFIFIGHVPN  250 (325)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTC-------------CEEEEECSEEEECSCEEES
T ss_pred             HHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCC-------------cEEEEEcCEEEEccCCCCC
Confidence            3444544 59999999999999875432245543   44             1237999999999997554

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=88.80  E-value=1  Score=40.99  Aligned_cols=60  Identities=7%  Similarity=-0.027  Sum_probs=45.3

Q ss_pred             HHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           48 LSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        48 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      ..+.+..+++|+++++++.|++++  ++++.++..+|.             ..++.+|.||.|+|.-.+.+....
T Consensus       204 ~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~~~g~-------------~~~i~~d~vi~~~G~~~~~~~~~~  263 (430)
T 3hyw_A          204 RLVEDLFAERNIDWIANVAVKAIE--PDKVIYEDLNGN-------------THEVPAKFTMFMPSFQGPEVVASA  263 (430)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEC--SSEEEEECTTSC-------------EEEEECSEEEEECEEECCHHHHTT
T ss_pred             HHHHHHHHhCCeEEEeCceEEEEe--CCceEEEeeCCC-------------ceEeecceEEEeccCCCchHHHhc
Confidence            445556788899999999998874  456666665552             237999999999998887776655

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=88.65  E-value=0.81  Score=43.04  Aligned_cols=48  Identities=10%  Similarity=0.047  Sum_probs=37.6

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +++.|++++.+++|+++..+++.+.+... +|             ...++++|+||+|+|+.
T Consensus        68 ~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g-------------~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           68 KARFNVEVRVKHEVVAIDRAAKLVTVRRLLDG-------------SEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             HHHHCCEEETTEEEEEEETTTTEEEEEETTTC-------------CEEEEECSEEEECCCEE
T ss_pred             HHhcCcEEEECCEEEEEECCCCEEEEEecCCC-------------CeEEEECCEEEECCCCC
Confidence            45579999999999999888777777652 23             12379999999999973

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=88.48  E-value=0.42  Score=43.69  Aligned_cols=57  Identities=19%  Similarity=0.120  Sum_probs=36.1

Q ss_pred             cHHHHHHHHHHHH-HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           42 DSHSLMLSLVGEA-ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        42 dp~~l~~~l~~~a-~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ++..+.....+.. ++.|++++.+++|+++..  +.+.|.+.++              ..++++|+||+|+|..
T Consensus        56 ~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~--~~~~v~~~~g--------------~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           56 TPDKLMYYPPEVFIKKRGIDLHLNAEVIEVDT--GYVRVRENGG--------------EKSYEWDYLVFANGAS  113 (449)
T ss_dssp             ----------CTHHHHTTCEEETTCEEEEECS--SEEEEECSSS--------------EEEEECSEEEECCCEE
T ss_pred             CHHHhhhcCHHHHHHhcCcEEEecCEEEEEec--CCCEEEECCc--------------eEEEEcCEEEECCCCC
Confidence            4444444443434 678999999999988854  4567777665              1279999999999963

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=88.25  E-value=1.7  Score=40.58  Aligned_cols=60  Identities=17%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC----CeEEEE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG----NCMNVY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~----~~~~V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+...+.+.+++.|++|+.++.+..+...+    +.+.|+  ..+|.            ++.++.+|.||+|+|.-.
T Consensus       250 ~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~------------~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          250 QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSE------------EIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSS------------CEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCc------------EEEEEECCEEEEecCCcc
Confidence            4566777778889999999999888887542    344443  34441            124678999999999743

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=88.12  E-value=1.1  Score=42.60  Aligned_cols=51  Identities=8%  Similarity=0.053  Sum_probs=39.7

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +...+++.|++++.+++|+++..+++.+.+.+ .+|             +..++++|+||+|+|.
T Consensus        99 ~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g-------------~~~~~~~d~lviAtG~  150 (588)
T 3ics_A           99 VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTN-------------ETYNEAYDVLILSPGA  150 (588)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTC-------------CEEEEECSEEEECCCE
T ss_pred             HHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCC-------------CEEEEeCCEEEECCCC
Confidence            33445678999999999999998878887765 234             1246899999999996

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=87.93  E-value=0.77  Score=41.22  Aligned_cols=55  Identities=15%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ...+.+.+++.|++++.+ +|+++..+++.  |++.++.           +...++++|+||+|+|...
T Consensus        59 ~~~~~~~~~~~gv~~~~~-~v~~i~~~~~~--V~~~~g~-----------~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           59 KVDLSEALPEKGIQFQEG-TVEKIDAKSSM--VYYTKPD-----------GSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             EEEHHHHTGGGTCEEEEC-EEEEEETTTTE--EEEECTT-----------SCEEEEECSEEEECCCCEE
T ss_pred             HHHHHHHHhhCCeEEEEe-eEEEEeCCCCE--EEEccCC-----------cccceeeCCEEEECCCCCc
Confidence            344555566789999987 89888776554  4444442           1123599999999999854

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=87.90  E-value=0.73  Score=42.37  Aligned_cols=47  Identities=13%  Similarity=-0.045  Sum_probs=33.8

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +++.|++++.+++|++++.+++.+.+... +|             +..++++|++|+|+|.
T Consensus        76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g-------------~~~~~~~d~lviAtG~  123 (472)
T 3iwa_A           76 RINKDVEALVETRAHAIDRAAHTVEIENLRTG-------------ERRTLKYDKLVLALGS  123 (472)
T ss_dssp             -----CEEECSEEEEEEETTTTEEEEEETTTC-------------CEEEEECSEEEECCCE
T ss_pred             hhhcCcEEEECCEEEEEECCCCEEEEeecCCC-------------CEEEEECCEEEEeCCC
Confidence            34579999999999999888777777652 23             1237999999999996

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=87.75  E-value=0.54  Score=43.42  Aligned_cols=58  Identities=10%  Similarity=0.019  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCe------EEEEecCCcccccCCCCCCCCCc-eeEecCEEEEcCCCCc
Q 023079           44 HSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNC------MNVYISESKNLRNWDGVSPLQPE-LTLIPKLVVNSAGLSA  115 (287)
Q Consensus        44 ~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~------~~V~t~~g~~~~~~~~~~~~~~~-~~i~a~~VV~aaG~~s  115 (287)
                      ..++.+|++   ..| ++|+.+++|++|..++++      |.|++.++. +          +. .+++||+||+|+.++.
T Consensus       243 ~~l~~~l~~---~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~-g----------~~~~~~~ad~VI~a~p~~~  308 (504)
T 1sez_A          243 QTLTDAICK---DLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPH-K----------RQSEEESFDAVIMTAPLCD  308 (504)
T ss_dssp             HHHHHHHHT---TSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSS-S----------SCBCCCEESEEEECSCHHH
T ss_pred             HHHHHHHHh---hcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCC-C----------ccceeEECCEEEECCCHHH
Confidence            455666653   345 789999999999988776      777664320 1          01 2689999999999753

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=87.72  E-value=0.21  Score=44.62  Aligned_cols=51  Identities=16%  Similarity=0.159  Sum_probs=43.3

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .++-..+...|.+.+.+.|++++++++|+++...          .                .++||.||.|.|.+|.
T Consensus        94 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~----------~----------------~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           94 GVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL----------P----------------LADYDLVVLANGVNHK  144 (381)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC----------C----------------GGGCSEEEECCGGGGG
T ss_pred             eecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc----------c----------------cccCCEEEECCCCCch
Confidence            5778899999999999999999999999877421          1                4689999999999986

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=87.46  E-value=0.97  Score=41.74  Aligned_cols=47  Identities=9%  Similarity=0.037  Sum_probs=36.6

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ++.|++++.+++|+++..+++.+.+.+ .+|.             +.++++|+||+|+|..
T Consensus       104 ~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~-------------~~~~~~d~lviAtG~~  151 (480)
T 3cgb_A          104 DKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKD-------------VFEFSYDRLLIATGVR  151 (480)
T ss_dssp             HTTCCEEESSEEEEEEETTTTEEEEEETTTCC-------------EEEEECSEEEECCCEE
T ss_pred             hhcCCEEEeCCEEEEEECCCCEEEEEEcCCCc-------------eEEEEcCEEEECCCCc
Confidence            345999999999999987777777765 3451             2369999999999964

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=87.40  E-value=0.73  Score=41.60  Aligned_cols=45  Identities=11%  Similarity=0.122  Sum_probs=36.3

Q ss_pred             HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..+++|++++.+++|+.+...+.  .|++.+|.               ++.+|++|+|+|..
T Consensus        66 ~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---------------~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           66 WYGEARIDMLTGPEVTALDVQTR--TISLDDGT---------------TLSADAIVIATGSR  110 (410)
T ss_dssp             HHHHTTCEEEESCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEE
T ss_pred             HHHHCCCEEEeCCEEEEEECCCC--EEEECCCC---------------EEECCEEEEccCCc
Confidence            34578999999999999976543  56777773               79999999999965

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=87.14  E-value=0.72  Score=46.09  Aligned_cols=48  Identities=15%  Similarity=0.106  Sum_probs=36.0

Q ss_pred             CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           58 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        58 Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +..|+.+++|+.|...++++.|++.+..+         .+...+++||+||+|....
T Consensus       581 ~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~---------~~~g~~i~AD~VIvTvPl~  628 (852)
T 2xag_A          581 GLDIKLNTAVRQVRYTASGCEVIAVNTRS---------TSQTFIYKCDAVLCTLPLG  628 (852)
T ss_dssp             TCCEECSEEEEEEEEETTEEEEEEEESSS---------TTCEEEEEESEEEECCCHH
T ss_pred             CCCEEeCCeEEEEEEcCCcEEEEEeeccc---------CCCCeEEECCEEEECCCHH
Confidence            56899999999999999899888765100         0001279999999998864

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=87.00  E-value=0.56  Score=44.78  Aligned_cols=56  Identities=11%  Similarity=0.065  Sum_probs=39.6

Q ss_pred             HHHCCcEEEcCceeEEEEEeC----CeE-EEEe--cCCcccccCCCCCCCCCceeEec-CEEEEcCCC-CchHHHHHh
Q 023079           54 AENHGTTFSNNTSVIGGHLEG----NCM-NVYI--SESKNLRNWDGVSPLQPELTLIP-KLVVNSAGL-SAPALAKRF  122 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~----~~~-~V~t--~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~-~s~~l~~~~  122 (287)
                      +.+.|+++++++.|+.|..++    +++ .|+.  .+|             +.++++| +.||+|||+ .+++|+...
T Consensus       241 ~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g-------------~~~~v~A~k~VILaaG~~~sp~lL~~S  305 (587)
T 1gpe_A          241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKA-------------VNFDVFAKHEVLLAAGSAISPLILEYS  305 (587)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETT-------------EEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             hcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCC-------------cEEEEEecccEEEccCCCCCHHHHHhC
Confidence            345689999999999998753    233 2443  344             2357889 899999999 566676555

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=86.83  E-value=0.89  Score=41.50  Aligned_cols=50  Identities=18%  Similarity=0.132  Sum_probs=37.6

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+++|++++.+++|+++..+...+.+......            ...++.+|++|+|+|+..
T Consensus        67 ~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~------------~~~~~~yd~lVIATGs~p  116 (437)
T 4eqs_A           67 YDRKQITVKTYHEVIAINDERQTVSVLNRKTN------------EQFEESYDKLILSPGASA  116 (437)
T ss_dssp             HHHHCCEEEETEEEEEEETTTTEEEEEETTTT------------EEEEEECSEEEECCCEEE
T ss_pred             HHhcCCEEEeCCeEEEEEccCcEEEEEeccCC------------ceEEEEcCEEEECCCCcc
Confidence            45679999999999999887776666544321            124799999999999753

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=86.80  E-value=0.42  Score=44.37  Aligned_cols=59  Identities=7%  Similarity=0.128  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcC--ceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079           43 SHSLMLSLVGEAENHGTTFSNN--TSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK  120 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~--~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~  120 (287)
                      +..++.+|++.+.+.  +++.+  ++|++|..++++|.  +.+|.               +++||+||+|+.++  .+.+
T Consensus       215 ~~~l~~~la~~l~~~--~i~~~~~~~V~~I~~~~~~v~--~~~G~---------------~~~ad~VI~a~p~~--~~~~  273 (484)
T 4dsg_A          215 TGIIYQAIKEKLPSE--KLTFNSGFQAIAIDADAKTIT--FSNGE---------------VVSYDYLISTVPFD--NLLR  273 (484)
T ss_dssp             THHHHHHHHHHSCGG--GEEECGGGCEEEEETTTTEEE--ETTSC---------------EEECSEEEECSCHH--HHHH
T ss_pred             HHHHHHHHHhhhhhC--eEEECCCceeEEEEecCCEEE--ECCCC---------------EEECCEEEECCCHH--HHHH
Confidence            567778877655432  67777  57999998877654  46662               79999999999765  4444


Q ss_pred             Hh
Q 023079          121 RF  122 (287)
Q Consensus       121 ~~  122 (287)
                      .+
T Consensus       274 ll  275 (484)
T 4dsg_A          274 MT  275 (484)
T ss_dssp             HE
T ss_pred             Hh
Confidence            44

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=86.29  E-value=1.4  Score=37.98  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=36.3

Q ss_pred             HHHCCcEEEcCceeEEEEEeCC--eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           54 AENHGTTFSNNTSVIGGHLEGN--CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~--~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .++.|++++.+++|.++..+++  ++ .|++.+..+          ++..++.+|.||+|+|.-.+
T Consensus       205 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~----------g~~~~i~~D~vi~a~G~~p~  260 (333)
T 1vdc_A          205 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT----------GDVSDLKVSGLFFAIGHEPA  260 (333)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTT----------CCEEEEECSEEEECSCEEES
T ss_pred             HhCCCeeEecCCceEEEeCCCCccceeeEEEEecCC----------CceEEEecCEEEEEeCCccc
Confidence            3567999999999999987654  43 244432100          11237999999999997544

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=85.79  E-value=0.51  Score=42.62  Aligned_cols=45  Identities=13%  Similarity=0.092  Sum_probs=35.6

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +++.|++++.+++|+++..++  +.|++.+|.               ++++|+||+|+|...
T Consensus        69 ~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~---------------~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           69 KRAPEVEWLLGVTAQSFDPQA--HTVALSDGR---------------TLPYGTLVLATGAAP  113 (408)
T ss_dssp             TTSCSCEEEETCCEEEEETTT--TEEEETTSC---------------EEECSEEEECCCEEE
T ss_pred             HHHCCCEEEcCCEEEEEECCC--CEEEECCCC---------------EEECCEEEECCCCCC
Confidence            456799999999999987654  456777762               799999999999743

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=85.32  E-value=1.6  Score=40.04  Aligned_cols=46  Identities=17%  Similarity=0.118  Sum_probs=37.0

Q ss_pred             cEEEcCceeEEEEEeC-CeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           59 TTFSNNTSVIGGHLEG-NCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        59 v~~~~~~~V~~i~~~~-~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      ++++.+++|+++..++ +++.|++.  +|.             +.++.+|.||+|+|...+.
T Consensus       226 v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~-------------~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          226 LNIKFNSPVTEVKKIKDDEYEVIYSTKDGS-------------KKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             CCEECSCCEEEEEEEETTEEEEEECCTTSC-------------CEEEEESCEEECCCEEECC
T ss_pred             EEEEECCEEEEEEEcCCCcEEEEEEecCCc-------------eEEEEcCEEEECcCCCccc
Confidence            9999999999998876 77777776  451             2379999999999976543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=85.27  E-value=1  Score=40.17  Aligned_cols=55  Identities=20%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             cHHHHHH-HHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           42 DSHSLML-SLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        42 dp~~l~~-~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+..+.. .+...+++.|++++.+++|+.+...+.  .|++.++                ++++|++|+|+|..
T Consensus        57 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~----------------~~~~d~lviAtG~~  112 (384)
T 2v3a_A           57 DADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQ--RIWIGEE----------------EVRYRDLVLAWGAE  112 (384)
T ss_dssp             CHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGT--EEEETTE----------------EEECSEEEECCCEE
T ss_pred             CHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCC--EEEECCc----------------EEECCEEEEeCCCC
Confidence            4445443 233445778999999999998876543  4555554                79999999999974

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=85.24  E-value=1.5  Score=40.18  Aligned_cols=49  Identities=12%  Similarity=0.091  Sum_probs=35.2

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +...+++.|++++.++.+. +  +.+.+.|.+.+|.             ..++++|+||+|+|..
T Consensus        99 ~~~~~~~~~v~~~~g~~~~-i--~~~~~~v~~~~G~-------------~~~~~~d~lviAtG~~  147 (468)
T 2qae_A           99 VEYLFKKNKVTYYKGEGSF-E--TAHSIRVNGLDGK-------------QEMLETKKTIIATGSE  147 (468)
T ss_dssp             HHHHHHHHTCEEEEEEEEE-E--ETTEEEEEETTSC-------------EEEEEEEEEEECCCEE
T ss_pred             HHHHHHhCCCEEEEEEEEE-e--eCCEEEEEecCCc-------------eEEEEcCEEEECCCCC
Confidence            3445667899999877542 3  4567888887661             1279999999999973

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=84.54  E-value=2.1  Score=41.29  Aligned_cols=52  Identities=15%  Similarity=0.042  Sum_probs=38.4

Q ss_pred             HHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           49 SLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+.+.++++|++++.+++|+++.  ++++.++ .+|.             +.++.+|.||+|+|.-.+
T Consensus       578 ~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~-------------~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          578 IHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGE-------------TQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTE-------------EEEECCSEEEECCCEEEC
T ss_pred             HHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCe-------------EEEEeCCEEEECCCcccc
Confidence            34456778999999999998886  3555554 4451             137999999999997654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=84.48  E-value=1.1  Score=40.91  Aligned_cols=54  Identities=11%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ..+...+.+..+++|++++.+++|.+++  ++  .|++++|.               ++.+|.||+|+|.-.+
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~--~~--~v~~~~g~---------------~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAIN--GN--EITFKSGK---------------VEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEE--TT--EEEETTSC---------------EEECSEEEECCCEEES
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEec--CC--eeeecCCe---------------EEeeeeEEEEeceecC
Confidence            3455667778889999999999998774  33  36667773               7999999999997543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=83.36  E-value=2.4  Score=39.63  Aligned_cols=55  Identities=9%  Similarity=0.038  Sum_probs=38.2

Q ss_pred             HHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           50 LVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        50 l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +.+.+.+ .|++++.+++|+++..+++++ .|+..++.+          +++.++.+|.||+|+|.-
T Consensus       396 l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~----------g~~~~i~~D~vi~a~G~~  452 (521)
T 1hyu_A          396 LQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVS----------GDIHSVALAGIFVQIGLL  452 (521)
T ss_dssp             HHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTT----------CCEEEEECSEEEECCCEE
T ss_pred             HHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCC----------CceEEEEcCEEEECcCCC
Confidence            3444555 599999999999998765555 355543211          123479999999999964

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=83.35  E-value=0.78  Score=42.61  Aligned_cols=60  Identities=28%  Similarity=0.345  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ++..+...+.+.+ +.|++++.+++|.++..+++.+.+.+ +++.             ..++.+|++|+|+|+..
T Consensus       159 ~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~-------------~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          159 DSRKVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDK-------------LIEILAKRVVLATGAID  219 (493)
T ss_dssp             EHHHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTE-------------EEEEEESCEEECCCEEE
T ss_pred             CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCe-------------EEEEECCEEEECCCCCc
Confidence            5667777766655 67999999999999988777666554 3331             13689999999999753

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=83.26  E-value=2.5  Score=38.79  Aligned_cols=48  Identities=8%  Similarity=-0.020  Sum_probs=34.6

Q ss_pred             HHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           51 VGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ...+++.|++++.++.+ .+  +.+.+.|++.+|.             ..++++|+||+|+|..
T Consensus       104 ~~~~~~~gv~~~~g~~~-~~--~~~~~~v~~~~gg-------------~~~~~~d~lViAtGs~  151 (474)
T 1zmd_A          104 AHLFKQNKVVHVNGYGK-IT--GKNQVTATKADGG-------------TQVIDTKNILIATGSE  151 (474)
T ss_dssp             HHHHHHTTCEEEESEEE-EE--ETTEEEEECTTSC-------------EEEEEEEEEEECCCEE
T ss_pred             HHHHHhCCCEEEEEEEE-Ee--cCCEEEEEecCCC-------------cEEEEeCEEEECCCCC
Confidence            45567789999988654 23  4567888887631             1279999999999974

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=83.16  E-value=1.4  Score=39.58  Aligned_cols=48  Identities=8%  Similarity=0.048  Sum_probs=37.6

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ......+.|++++.+++|+.+...+.  .|.+.+|.               ++.+|++|+|+|..
T Consensus        71 ~~~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---------------~~~~d~lvlAtG~~  118 (415)
T 3lxd_A           71 PAQFWEDKAVEMKLGAEVVSLDPAAH--TVKLGDGS---------------AIEYGKLIWATGGD  118 (415)
T ss_dssp             CHHHHHHTTEEEEETCCEEEEETTTT--EEEETTSC---------------EEEEEEEEECCCEE
T ss_pred             CHHHHHHCCcEEEeCCEEEEEECCCC--EEEECCCC---------------EEEeeEEEEccCCc
Confidence            34455678999999999999876543  56777773               79999999999953

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=82.80  E-value=1.8  Score=37.48  Aligned_cols=49  Identities=18%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ++.|++++.+++|.++..+++...|++.   +|             +..++.+|.||+|+|.-.+
T Consensus       202 ~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p~  253 (335)
T 2a87_A          202 NNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTG-------------AETTLPVTGVFVAIGHEPR  253 (335)
T ss_dssp             HCTTEEEECSEEEEEEECSSSCCEEEEEEETTS-------------CCEEECCSCEEECSCEEEC
T ss_pred             ccCCcEEEeCceeEEEecCCcEeEEEEEEcCCC-------------ceEEeecCEEEEccCCccC
Confidence            5689999999999999766532233332   33             1237999999999997533

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=82.27  E-value=0.88  Score=42.26  Aligned_cols=44  Identities=16%  Similarity=0.220  Sum_probs=35.3

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      .+.|++++.+++|+++..++.  .|++++|.               ++.+|+||+|+|...
T Consensus       101 ~~~gv~~~~g~~v~~id~~~~--~V~~~~g~---------------~i~yd~lviATGs~p  144 (493)
T 1m6i_A          101 ENGGVAVLTGKKVVQLDVRDN--MVKLNDGS---------------QITYEKCLIATGGTP  144 (493)
T ss_dssp             TTCEEEEEETCCEEEEEGGGT--EEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             hcCCeEEEcCCEEEEEECCCC--EEEECCCC---------------EEECCEEEECCCCCC
Confidence            356899999999999977543  56777772               799999999999754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=81.98  E-value=1  Score=42.47  Aligned_cols=42  Identities=7%  Similarity=0.167  Sum_probs=32.1

Q ss_pred             HHHCCcEEEc--CceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           54 AENHGTTFSN--NTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        54 a~~~Gv~~~~--~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+.+|+++.  .++|..+...  +  |.|.+|                ++.+|.||.|||.-+
T Consensus       348 l~~~nV~lv~~~~~~I~~it~~--g--v~~~dG----------------~~~~D~IV~ATGf~~  391 (545)
T 3uox_A          348 YNRDNVHLVDIREAPIQEVTPE--G--IKTADA----------------AYDLDVIIYATGFDA  391 (545)
T ss_dssp             TTSTTEEEEETTTSCEEEEETT--E--EEESSC----------------EEECSEEEECCCCBS
T ss_pred             hcCCCEEEEecCCCCceEEccC--e--EEeCCC----------------eeecCEEEECCcccc
Confidence            3445788885  6788777542  2  778888                799999999999865

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=81.40  E-value=2.3  Score=38.07  Aligned_cols=45  Identities=9%  Similarity=0.128  Sum_probs=35.7

Q ss_pred             HHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           51 VGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      .....+.|++++. ++|+++..++.  .|++.+|.               ++.+|++|+|+|.
T Consensus        64 ~~~~~~~~i~~~~-~~v~~id~~~~--~v~~~~g~---------------~~~~d~lvlAtG~  108 (404)
T 3fg2_P           64 EKFFQDQAIELIS-DRMVSIDREGR--KLLLASGT---------------AIEYGHLVLATGA  108 (404)
T ss_dssp             HHHHHHTTEEEEC-CCEEEEETTTT--EEEESSSC---------------EEECSEEEECCCE
T ss_pred             HHHHHhCCCEEEE-EEEEEEECCCC--EEEECCCC---------------EEECCEEEEeeCC
Confidence            3445678999998 99999977654  46677773               7999999999996

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=81.34  E-value=2.4  Score=37.72  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=34.1

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      +.++|++++. .+|++|+.+++  .|++.+|.               ++..|++|+|+|+..
T Consensus        65 ~~~~gv~~i~-~~v~~id~~~~--~v~~~~g~---------------~i~yd~LviAtG~~~  108 (401)
T 3vrd_B           65 LRAHGIQVVH-DSALGIDPDKK--LVKTAGGA---------------EFAYDRCVVAPGIDL  108 (401)
T ss_dssp             HHHTTCEEEC-SCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEEE
T ss_pred             HHHCCCEEEE-eEEEEEEccCc--EEEecccc---------------eeecceeeeccCCcc
Confidence            4567999986 47888877654  46677773               799999999999753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=80.89  E-value=2  Score=39.78  Aligned_cols=51  Identities=8%  Similarity=0.001  Sum_probs=35.8

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEe----CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLE----GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~----~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      +.+.+++.|++++.++ +..+..+    ++.+.|.+++|.             ..++++|++|+|+|..
T Consensus       101 ~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~-------------~~~~~~d~lviATGs~  155 (499)
T 1xdi_A          101 ITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGS-------------TSEHEADVVLVATGAS  155 (499)
T ss_dssp             HHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSC-------------EEEEEESEEEECCCEE
T ss_pred             HHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCc-------------EEEEEeCEEEEcCCCC
Confidence            4556678899999886 5555432    245778777661             1269999999999974

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=80.79  E-value=1.1  Score=42.64  Aligned_cols=63  Identities=25%  Similarity=0.192  Sum_probs=40.8

Q ss_pred             HHHHHH-HHCCcEEEcCceeEEEEEe----C-CeE-EEEecCCcccccCCCCCCCC-CceeEec-CEEEEcCCCC-chHH
Q 023079           49 SLVGEA-ENHGTTFSNNTSVIGGHLE----G-NCM-NVYISESKNLRNWDGVSPLQ-PELTLIP-KLVVNSAGLS-APAL  118 (287)
Q Consensus        49 ~l~~~a-~~~Gv~~~~~~~V~~i~~~----~-~~~-~V~t~~g~~~~~~~~~~~~~-~~~~i~a-~~VV~aaG~~-s~~l  118 (287)
                      +++..+ .+.+.++++++.|+.|..+    + ++. .|+..++.           + +.++++| +-||+|||+. +++|
T Consensus       212 ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~-----------g~~~~~v~A~kEVILsAGai~SPql  280 (566)
T 3fim_B          212 AYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQE-----------GAPTTTVCAKKEVVLSAGSVGTPIL  280 (566)
T ss_dssp             HTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESST-----------TSCCEEEEEEEEEEECCHHHHHHHH
T ss_pred             HHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECC-----------CceEEEEEeeeEEEEecCCcCChHH
Confidence            444433 4568999999999999876    3 232 35443320           1 3457889 6799999975 5566


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      +...
T Consensus       281 L~lS  284 (566)
T 3fim_B          281 LQLS  284 (566)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            5544

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=80.74  E-value=3.2  Score=39.81  Aligned_cols=56  Identities=9%  Similarity=-0.025  Sum_probs=37.8

Q ss_pred             CCcEEEcCceeEEEEEeCC--eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079           57 HGTTFSNNTSVIGGHLEGN--CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF  122 (287)
Q Consensus        57 ~Gv~~~~~~~V~~i~~~~~--~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~  122 (287)
                      .|+++++++.|+.|..+++  ++ .|+..+..+          ++..++.||.||+|+|.... +++...
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~----------g~~~~i~A~~VIlaaG~~~s~~lL~~s  332 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLIS----------GDRFEIKADVYVLTAGAVHNTQLLVNS  332 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTT----------CCEEEECEEEEEECSCTTHHHHHHHTT
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCC----------CcEEEEECCEEEEcCCCcCCHHHHHhc
Confidence            3799999999999987643  33 355433111          12457999999999998654 455444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.002
d1ryia2	88	d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillu	0.004

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 17/140 (12%), Positives = 27/140 (19%), Gaps = 28/140 (20%)

Query: 105 KLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL 164
            +VV+ AG     +             P              +     H          L
Sbjct: 194 DIVVSCAGFWGAKIGAMIGMAVPPDGGPLLGESKELDGFYVAEAVWVTHSAGVAKAMAEL 253

Query: 165 GVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDG 224
                 + D                             +  R E       +Y  +    
Sbjct: 254 LTTGRSETDL-------------------------GECDITRFEDVQ-LTPEYVSETSQQ 287

Query: 225 SLQPSYAGIRPKLSGPRQSP 244
           +    Y  + P    PR SP
Sbjct: 288 NFVEIYDVLHPLQ--PRLSP 305

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 88

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 9/73 (12%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 163 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR 222
               ++     G++  G  ++  D           +  + +    E    + +   P ++
Sbjct: 24  HDHCYIVPRKSGRLVVGATMKPGD-----------WSETPDLGGLESVMKKAKTMLPAIQ 72

Query: 223 DGSLQPSYAGIRP 235
           +  +   +AG+RP
Sbjct: 73  NMKVDRFWAGLRP 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.79
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.78
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.77
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.19
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	98.97
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	98.84
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.02
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.93
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.92
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.8
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.59
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.52
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.52
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.49
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	97.46
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.35
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.26
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	97.14
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	97.12
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.1
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.1
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.05
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.04
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.9
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.88
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.76
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.69
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.67
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.58
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.51
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.41
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.36
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.36
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.29
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.07
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.77
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.54
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	95.38
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	95.17
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.73
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.73
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	94.41
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.85
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	93.77
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.41
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.75
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.72
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	92.69
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.49
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.1
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	90.05
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	89.53
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.3
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.5
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.42
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	87.23
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	86.2
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.97
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.9
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	85.12
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	84.18
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	84.08
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	83.78
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	81.83

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.79  E-value=5.5e-19  Score=152.67  Aligned_cols=103  Identities=18%  Similarity=0.252  Sum_probs=96.2

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEE
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNV   79 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V   79 (287)
                      ..+..|.+ .++|+++|+.+++|.++   ..++++.|++|++||.+++.+|.+.|+++|++|+++++|+++..++++|.|
T Consensus       107 ~~~~~g~~-~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V  185 (281)
T d2gf3a1         107 AAKEHSLT-VDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKI  185 (281)
T ss_dssp             HHHHTTCC-CEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEE
T ss_pred             hhccccch-hhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccccccccccCCcEEEEEEEECCEEEE
Confidence            35677887 99999999999999985   578999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      +|++|                +|+||+||||+|+|+..|++++
T Consensus       186 ~t~~g----------------~i~a~~VViAaG~~s~~l~~~l  212 (281)
T d2gf3a1         186 ETANG----------------SYTADKLIVSMGAWNSKLLSKL  212 (281)
T ss_dssp             EETTE----------------EEEEEEEEECCGGGHHHHGGGG
T ss_pred             EECCc----------------EEEcCEEEECCCCcchhhHHhc
Confidence            99999                8999999999999999998766

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.78  E-value=2.5e-19  Score=156.67  Aligned_cols=111  Identities=22%  Similarity=0.322  Sum_probs=99.2

Q ss_pred             cchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-
Q 023079            3 RGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-   78 (287)
Q Consensus         3 ~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-   78 (287)
                      ..+..+.+ .++++.+++.+++|...   ..+|+|.|++|++||..++.+|++.|+++|++|+++++|+++..+++++. 
T Consensus       105 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~  183 (305)
T d1pj5a2         105 YAAAWGIE-GRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTG  183 (305)
T ss_dssp             HHHHHTCC-CEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEE
T ss_pred             HHHhhccc-ccccchHHhhhhcccccccccccceecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEE
Confidence            34567886 99999999999999764   57899999999999999999999999999999999999999999998864 


Q ss_pred             EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccC
Q 023079           79 VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIP  131 (287)
Q Consensus        79 V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p  131 (287)
                      |+|++|                +|+||+||||+|+|+.+|++++ +..+++.+
T Consensus       184 V~T~~g----------------~i~a~~VV~aaG~~s~~l~~~~-g~~lP~~~  219 (305)
T d1pj5a2         184 VQTADG----------------VIPADIVVSCAGFWGAKIGAMI-GMAVPPDG  219 (305)
T ss_dssp             EEETTE----------------EEECSEEEECCGGGHHHHHHTT-TCCCCTTS
T ss_pred             Eeccce----------------eEECCEEEEecchhHHHHHHHc-CCcccccc
Confidence            999988                8999999999999999999988 55655444

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.77  E-value=3.2e-18  Score=147.20  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=90.9

Q ss_pred             eeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccc
Q 023079           11 GLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLR   88 (287)
Q Consensus        11 ~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~   88 (287)
                      ..++++.+++.+.+|.+.  ..+|+|.|++|++||..++.+|++.|+++|++|+++++|++|..+++.|.|+|++|    
T Consensus       116 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g----  191 (276)
T d1ryia1         116 SVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG----  191 (276)
T ss_dssp             TEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE----
T ss_pred             cccccccccccccCcccccceeEEEEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe----
Confidence            478999999999999885  78999999999999999999999999999999999999999998888899999998    


Q ss_pred             cCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           89 NWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        89 ~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                                  +|+||+||||+|+|+..|++++
T Consensus       192 ------------~i~a~~vV~AaG~~s~~l~~~~  213 (276)
T d1ryia1         192 ------------DVWANHVVVASGVWSGMFFKQL  213 (276)
T ss_dssp             ------------EEEEEEEEECCGGGTHHHHHHT
T ss_pred             ------------EEEcCEEEECCCccHHHHHhhc
Confidence                        8999999999999999999887

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.19  E-value=7.6e-12  Score=88.84  Aligned_cols=86  Identities=15%  Similarity=0.267  Sum_probs=70.1

Q ss_pred             cccceEEEEEcCCCCCCCCceeeeCCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHH
Q 023079          134 YYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPE  213 (287)
Q Consensus       134 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (287)
                      |++|||++.+.... ..+++.++      ..+.|++|..+|.+++|+|.++.           .++...+++..+++++.
T Consensus         2 ~PvKGq~l~v~~~~-~~~~~~i~------~~~~yiip~~~g~~~iG~T~e~~-----------~~d~~~~~~~~~~l~~~   63 (88)
T d1ryia2           2 LPVKGECLSVWNDD-IPLTKTLY------HDHCYIVPRKSGRLVVGATMKPG-----------DWSETPDLGGLESVMKK   63 (88)
T ss_dssp             EEEEEEEEEEECCS-SCCCSEEE------ETTEEEEECTTSEEEEECCCEET-----------CCCCSCCHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCC-CccCCEEe------CCCEEEEECCCCCEEEccEEEEC-----------CCCCCCCHHHHHHHHHH
Confidence            55999999997642 23444443      23489999999999999998863           35667889999999999


Q ss_pred             HhhhCCCCCCCCccccccccccee
Q 023079          214 IRKYYPDLRDGSLQPSYAGIRPKL  237 (287)
Q Consensus       214 ~~~~~P~l~~~~i~~~~~G~r~~~  237 (287)
                      +.+++|.|.+.++.+.|+|+||.+
T Consensus        64 a~~~~P~l~~~~v~~~waGlRP~t   87 (88)
T d1ryia2          64 AKTMLPAIQNMKVDRFWAGLRPGT   87 (88)
T ss_dssp             HHHHCGGGGGSEEEEEEEEEEEEC
T ss_pred             HHHHCCCcCCCcEeEEEEeeCCCC
Confidence            999999999999999999999983

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.97  E-value=3.7e-10  Score=80.70  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             ccceEEEEEcCCCCCCCCceeee-CCC-CCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHH
Q 023079          135 YARGCYFSLANTKVAPFKHLIYP-IPE-DGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYP  212 (287)
Q Consensus       135 ~~~g~~~~~~~~~~~~~~~~i~~-~~~-~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (287)
                      ++|||++.++.+   .+++.+.. .+. ......|++|..+ .+++|+|.+..           .++...+.+.++++++
T Consensus         3 PvrGQil~v~~P---~~~~~~~~~~~~~~~~~~~yivpr~~-~~viG~T~e~~-----------~~d~~~~~~~~~~i~~   67 (93)
T d1kifa2           3 PGRGQIIKVDAP---WLKNFIITHDLERGIYNSPYIIPGLQ-AVTLGGTFQVG-----------NWNEINNIQDHNTIWE   67 (93)
T ss_dssp             EEEEEEEEEECT---TCCSEEEEECTTTCTTCSCEEEECSS-SEEEECCCEET-----------CCCCSCCHHHHHHHHH
T ss_pred             cccceEEEEcCC---CCccceeeccccccCCCceEEEECCC-CEEEEEEeecC-----------CCCCCCCHHHHHHHHH
Confidence            499999999764   23333221 111 1244578899854 58899998753           3566778899999999


Q ss_pred             HHhhhCCCCCCCCccccccccccee
Q 023079          213 EIRKYYPDLRDGSLQPSYAGIRPKL  237 (287)
Q Consensus       213 ~~~~~~P~l~~~~i~~~~~G~r~~~  237 (287)
                      .+.+++|.|.+.++.+.|+|+||+.
T Consensus        68 ~a~~~~P~l~~~~i~~~~~GlRP~r   92 (93)
T d1kifa2          68 GCCRLEPTLKDAKIVGEYTGFRPVR   92 (93)
T ss_dssp             HHHHHSGGGGGCEEEEEEEEEEEEC
T ss_pred             HHHHHHhhhcCCCeeeEEEeecCCC
Confidence            9999999999999999999999983

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.84  E-value=1.9e-09  Score=77.19  Aligned_cols=86  Identities=15%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             ccceEEEEEcCCCCCCCCceeeeCCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHH
Q 023079          135 YARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEI  214 (287)
Q Consensus       135 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (287)
                      ++|||++.+..+.   ....+... .. +...|++|..+|.+++|+|.+..           .++..++.+..+++++.+
T Consensus         3 PvRGQ~~~v~~p~---~~~~~~~~-~~-~~~~Yiipr~~g~vviG~T~e~~-----------~~d~~~~~~~~~~il~~a   66 (95)
T d1c0pa2           3 PIRGQTVLVKSPC---KRCTMDSS-DP-ASPAYIIPRPGGEVICGGTYGVG-----------DWDLSVNPETVQRILKHC   66 (95)
T ss_dssp             EEEEEEEEEECCC---CCCEEECS-CT-TCCEEEEEETTTEEEEECCCEET-----------CCCCSCCHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCC---CcccEEEe-cC-CCeEEEEECCCCEEEEEEEEEEC-----------CCcCCCCHHHHHHHHHHH
Confidence            3899999997641   22222221 11 33379999989999999998753           457778899999999999


Q ss_pred             hhhCCCCC------CCCcccccccccce
Q 023079          215 RKYYPDLR------DGSLQPSYAGIRPK  236 (287)
Q Consensus       215 ~~~~P~l~------~~~i~~~~~G~r~~  236 (287)
                      .+++|.|.      +.++...|+|+||.
T Consensus        67 ~~~~P~L~~~~~~~~~~v~~~~~GlRP~   94 (95)
T d1c0pa2          67 LRLDPTISSDGTIEGIEVLRHNVGLRPA   94 (95)
T ss_dssp             HHHCGGGSSSSSGGGCEEEEEEEEEEEE
T ss_pred             HHhCccccccccccCccEEEeEEEeCCC
Confidence            99999984      56788999999995

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.02  E-value=9.3e-06  Score=66.81  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ....++..|.+.++++|++++++++|+++..+++.+. |.+++|.               +|+||+||+|+|.+|.
T Consensus       108 ~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~a~~vI~AtGg~S~  168 (251)
T d2i0za1         108 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGE---------------VLETNHVVIAVGGKSV  168 (251)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCC---------------EEECSCEEECCCCSSS
T ss_pred             cHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCC---------------eEecCeEEEccCCccc
Confidence            3467888999999999999999999999999888764 8888873               7999999999998763

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.93  E-value=1.5e-06  Score=71.03  Aligned_cols=79  Identities=14%  Similarity=0.077  Sum_probs=58.9

Q ss_pred             ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           30 VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        30 ~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      ..+.|.++++++||..++.+|.+.++++|++|+.. +|++++.          -+                ...+|.|||
T Consensus       128 ~~~~~~~~~~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~~----------~~----------------~~~~d~vVn  180 (246)
T d1kifa1         128 YRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLR-KVESFEE----------VA----------------RGGADVIIN  180 (246)
T ss_dssp             CCEEEEEEEEEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHHH----------HH----------------HTTCSEEEE
T ss_pred             cceEEEccceEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHHH----------hc----------------cCCCCEEEE
Confidence            45678889999999999999999999999999754 4554421          11                456899999


Q ss_pred             cCCCCchHHHHHhCCCCCcccCCccccceEEEEEc
Q 023079          110 SAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLA  144 (287)
Q Consensus       110 aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~  144 (287)
                      |+|.|+..+..     +...+|    .+++.+...
T Consensus       181 ctG~~a~~l~~-----d~~~~~----~r~~~lr~~  206 (246)
T d1kifa1         181 CTGVWAGVLQP-----DPLQVR----LEREQLRFG  206 (246)
T ss_dssp             CCGGGHHHHSC-----CTTSCE----EEEEEEESS
T ss_pred             CCcccccccCC-----CCCeec----cceEEEeeC
Confidence            99999988752     223334    777766543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.6e-05  Score=59.82  Aligned_cols=56  Identities=13%  Similarity=0.162  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      |..+...+.+.++++|++++.++.|.++..+++.+.|++++|.               +|.||.||.|+|.
T Consensus        82 ~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~---------------~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          82 PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGR---------------KVETDHIVAAVGL  137 (137)
T ss_dssp             CHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECCCE
T ss_pred             CHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCC---------------EEECCEEEEeecC
Confidence            4567777888899999999999999999988888899999983               8999999999994

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.86  E-value=1.1e-05  Score=66.03  Aligned_cols=60  Identities=25%  Similarity=0.233  Sum_probs=46.2

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      .+...++++||..++..|.+.+++.|++|+.. +|+++           +..                ...++.||+|+|
T Consensus       131 ~~~~~~~~~d~~~~~~~l~~~~~~~Gv~i~~~-~v~~~-----------~~~----------------~~~~~~vv~a~G  182 (268)
T d1c0pa1         131 GVTYDTLSVHAPKYCQYLARELQKLGATFERR-TVTSL-----------EQA----------------FDGADLVVNATG  182 (268)
T ss_dssp             EEEEEEEECCHHHHHHHHHHHHHHTTCEEEEC-CCSBG-----------GGT----------------CSSCSEEEECCG
T ss_pred             cccccceecCHHHHHHHHHHHHHHCCCEEEEe-Eecch-----------HHc----------------cccceEEEECCc
Confidence            34456789999999999999999999998643 33222           222                567999999999


Q ss_pred             CCchHHHH
Q 023079          113 LSAPALAK  120 (287)
Q Consensus       113 ~~s~~l~~  120 (287)
                      .|+..+..
T Consensus       183 ~~a~~l~~  190 (268)
T d1c0pa1         183 LGAKSIAG  190 (268)
T ss_dssp             GGGGTSBT
T ss_pred             hhhhhhhh
Confidence            99987754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.80  E-value=3.5e-05  Score=56.51  Aligned_cols=59  Identities=12%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      +|+. +...+.+..+++|++|+++++|++++.+++++.|+..++.+.+            ++.||.|++|+|
T Consensus        61 ~d~e-i~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~------------~~~~D~vlvAvG  119 (119)
T d3lada2          61 VDEQ-VAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEK------------SQAFDKLIVAVG  119 (119)
T ss_dssp             SCHH-HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEE------------EEEESEEEECSC
T ss_pred             ccch-hHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCE------------EEECCEEEEeeC
Confidence            3544 6777888889999999999999999999888888776653323            799999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.59  E-value=0.00011  Score=53.41  Aligned_cols=56  Identities=14%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      +|| .+...+.+..+++|++|++++.|+++...+++ ..|.+++|.               ++.||.||+|+|
T Consensus        60 ~d~-~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~---------------~i~~D~Vi~a~G  116 (117)
T d1feca2          60 FDS-ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGA---------------EADYDVVMLAIG  116 (117)
T ss_dssp             SCH-HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSC
T ss_pred             ccc-hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCC---------------EEEcCEEEEecC
Confidence            354 47788888899999999999999999876554 468888883               799999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00018  Score=52.28  Aligned_cols=55  Identities=11%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      |+ .+...+.+.++++|++++.++.|+.+...++ .+.|++++|.               ++++|.||+|+|
T Consensus        61 d~-~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~---------------~~~~D~vi~a~G  116 (116)
T d1gesa2          61 DP-MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGR---------------SETVDCLIWAIG  116 (116)
T ss_dssp             CH-HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSC
T ss_pred             ch-hhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCC---------------EEEcCEEEEecC
Confidence            54 5677888889999999999999999987754 5788898883               799999999998

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.52  E-value=0.00011  Score=60.57  Aligned_cols=57  Identities=12%  Similarity=0.078  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe----EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC----MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~----~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ...+...|.+.+++.|++|+++++|+++....+.    +.+.++.+                +|+||.||+|+|..|
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~----------------~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST----------------QWQCKNLIVATGGLS  168 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE----------------EEEESEEEECCCCSS
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCE----------------EEEeCEEEEcCCccc
Confidence            4568888999999999999999999999886543    23444444                899999999999765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.46  E-value=0.00019  Score=60.57  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEE-EEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVN  109 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~  109 (287)
                      ..+.|.+....+..++..+.+.+.+.|++++++++|+++..+++ ++. |...+..           +....|+|+.||+
T Consensus       133 ~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~-----------~~~~~i~Ak~VVl  201 (308)
T d1y0pa2         133 RAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMY-----------KGYYWVKADAVIL  201 (308)
T ss_dssp             CEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETT-----------TEEEEEECSEEEE
T ss_pred             cccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccc-----------cceeEeecCeEEE
Confidence            45556677777888999999999999999999999999887654 443 5543321           1135799999999


Q ss_pred             cCCCCchH
Q 023079          110 SAGLSAPA  117 (287)
Q Consensus       110 aaG~~s~~  117 (287)
                      |||.++..
T Consensus       202 AtGG~~~n  209 (308)
T d1y0pa2         202 ATGGFAKN  209 (308)
T ss_dssp             CCCCCTTC
T ss_pred             ccCccccc
Confidence            99998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.35  E-value=0.00025  Score=52.06  Aligned_cols=57  Identities=21%  Similarity=0.288  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEE--EecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNV--YISESKNLRNWDGVSPLQPELTLIPKLVVNSA  111 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V--~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa  111 (287)
                      |+ .+...+.+.++++|++|++++.|++++..++++.|  +..++            +++.+++||+|++||
T Consensus        65 d~-~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~------------g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          65 DA-EIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAG------------GEQTIIEADVVLVSA  123 (123)
T ss_dssp             CH-HHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSS------------CCCEEEEESEEECCC
T ss_pred             hh-cchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCC------------CeEEEEEcCEEEEcC
Confidence            44 67777888999999999999999999987777654  44333            124579999999997

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.32  E-value=0.00031  Score=51.75  Aligned_cols=58  Identities=16%  Similarity=0.104  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      ..+...+.+..+++|++++.+++|++++.++++..|.+..+.+           ...+++||+|++|+|
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g-----------~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANA-----------PKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSC-----------CSSCEEESCEEECCC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCC-----------CeEEEEcCEEEEecC
Confidence            3667778888899999999999999999988877666543311           123799999999998

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.26  E-value=0.0003  Score=60.33  Aligned_cols=65  Identities=15%  Similarity=-0.066  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      -..+...|...++..+..++++++|++++..+++|.|++.++..++         +.....+|.||+|+|.++.
T Consensus       112 ~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~---------~~~~~~~d~VI~AtG~~s~  176 (335)
T d2gv8a1         112 RHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGS---------PISKDIFDAVSICNGHYEV  176 (335)
T ss_dssp             HHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTC---------CEEEEEESEEEECCCSSSS
T ss_pred             hHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCC---------eEEEEEeeEEEEccccccc
Confidence            3455555666677778899999999999999999999887653322         2345679999999998873

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.14  E-value=0.00062  Score=57.84  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      .+.+..+......++.+|.+.++++|++++++++|+++... ++++. |.  ..++             +.+.|.|+.||
T Consensus       137 ~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~-------------~~~~i~Ak~VV  203 (317)
T d1qo8a2         137 THRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHT-------------GYYMIGAKSVV  203 (317)
T ss_dssp             EEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTT-------------EEEEEEEEEEE
T ss_pred             ccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccc-------------eEEEEeccceE
Confidence            44556666777889999999999999999999999998765 44542 43  3333             24578999999


Q ss_pred             EcCCCCchH
Q 023079          109 NSAGLSAPA  117 (287)
Q Consensus       109 ~aaG~~s~~  117 (287)
                      +|||.|+..
T Consensus       204 lAtGG~~~n  212 (317)
T d1qo8a2         204 LATGGYGMN  212 (317)
T ss_dssp             ECCCCCTTC
T ss_pred             EeccccccC
Confidence            999998754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=97.12  E-value=0.00088  Score=56.83  Aligned_cols=71  Identities=20%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEe--cCCcccccCCCCCCCCCceeEecCEEE
Q 023079           33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYI--SESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      .+.+..+......++..|.+.+.++|++|+++++|+++..++ +++ .|..  .++             ....|.|+.||
T Consensus       141 ~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~-------------~~~~i~Ak~VI  207 (322)
T d1d4ca2         141 SHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYT-------------GYYVIKADAVV  207 (322)
T ss_dssp             EEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTT-------------EEEEEECSEEE
T ss_pred             ccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecc-------------cEEEEeCCeEE
Confidence            445566667788899999999999999999999999987754 443 2433  333             13479999999


Q ss_pred             EcCCCCch
Q 023079          109 NSAGLSAP  116 (287)
Q Consensus       109 ~aaG~~s~  116 (287)
                      +|||.++.
T Consensus       208 lAtGG~~~  215 (322)
T d1d4ca2         208 IAAGGFAK  215 (322)
T ss_dssp             ECCCCCTT
T ss_pred             EcCCCccc
Confidence            99999875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.10  E-value=0.00078  Score=49.96  Aligned_cols=55  Identities=16%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC--eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN--CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      +..+...+.+..+++|++++.+++|+.++..++  .+ .|.+++|.               ++.||.||+|+|
T Consensus        76 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~---------------~i~~D~vi~a~G  133 (133)
T d1q1ra2          76 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGT---------------RLPADLVIAGIG  133 (133)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSC---------------EEECSEEEECCC
T ss_pred             chhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCC---------------EEECCEEEEeeC
Confidence            445566666778899999999999999987643  34 37888883               799999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.10  E-value=0.00082  Score=48.61  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      ..+...+.+..+++|+++++++.|++++..+ +...|++++|.               +++||.||+|
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~---------------~i~~D~Vi~A  116 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGK---------------KMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEEC
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCc---------------EEEeCEEEEe
Confidence            4667778888999999999999999998764 45779999983               7999999987

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.00035  Score=55.70  Aligned_cols=62  Identities=16%  Similarity=0.129  Sum_probs=47.1

Q ss_pred             eeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           31 KALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        31 ~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      ++++.|.+|.   ..++.+|++.++++|++|+++++|++|..++  +.+.+.+.+|.               +++||+||
T Consensus       226 ~~~~~~~gG~---~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~---------------~~~ad~VI  287 (297)
T d2bcgg1         226 SPYLYPMYGL---GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLG---------------TFKAPLVI  287 (297)
T ss_dssp             CSEEEETTCT---THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTE---------------EEECSCEE
T ss_pred             CcceeccCcH---HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCE---------------EEECCEEE
Confidence            4555666653   5688999999999999999999999997754  45654455562               89999977


Q ss_pred             Ec
Q 023079          109 NS  110 (287)
Q Consensus       109 ~a  110 (287)
                      ..
T Consensus       288 ~~  289 (297)
T d2bcgg1         288 AD  289 (297)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.04  E-value=0.00018  Score=59.31  Aligned_cols=48  Identities=21%  Similarity=0.086  Sum_probs=36.3

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ++.|++|+++++|++|+.+++++.|++.++.            +..+++||+||+|++++
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~------------~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDGGWRLIIEEHG------------RRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC--CCEEEEEETT------------EEEEEECSEEEECSCHH
T ss_pred             HHhhcccccCCEEEEEEEeCCeEEEEEEcCC------------eEEEEECCEEEECCCHH
Confidence            4558999999999999988888876654431            12479999999999975

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0012  Score=48.20  Aligned_cols=64  Identities=16%  Similarity=0.024  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      |+ .+...+.+.++++|++|+.+++|+++...++++.+.......++      .......++||.|++|+|
T Consensus        62 d~-~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~------~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          62 DS-MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR------LPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             CH-HHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTS------CCEEEEEEEESEEEECSC
T ss_pred             hh-HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCc------CcCccccccCCEEEEEeC
Confidence            44 47788888899999999999999999998887765432211111      111224578999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.90  E-value=0.0017  Score=46.67  Aligned_cols=57  Identities=11%  Similarity=0.130  Sum_probs=44.4

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      +|+ .+...+.+..+++|++|++++.|++++..++++.|.+..+.            ...+++||.|++.
T Consensus        61 ~d~-~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g------------~~~~i~~D~Vlvs  117 (117)
T d1ebda2          61 FEK-QMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANG------------ETKTIDADYVLVT  117 (117)
T ss_dssp             SCH-HHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETT------------EEEEEEESEEEEC
T ss_pred             ccc-hhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCC------------CEEEEEeEEEEEC
Confidence            354 47777888899999999999999999998888776654331            1247999999974

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.0023  Score=46.56  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      +|| .+...+.+..+++|++|+++++|++++..+++  +.++..++.++          ...+++||.|++|
T Consensus        62 ~d~-ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~----------~~~~ie~D~vlvA  122 (122)
T d1v59a2          62 MDG-EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTN----------KQENLEAEVLLVA  122 (122)
T ss_dssp             SCH-HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTT----------EEEEEEESEEEEC
T ss_pred             hhh-hhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCC----------CeEEEEeCEEEEC
Confidence            354 47788888899999999999999999987654  34555544221          2357999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.76  E-value=0.0016  Score=47.45  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      +..+...+.+..+++|+++++++.|+++..  +  .|++++|.               ++.||.||+|+|
T Consensus        71 ~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~--~--~v~l~dg~---------------~i~~D~vi~a~G  121 (121)
T d1d7ya2          71 PATLADFVARYHAAQGVDLRFERSVTGSVD--G--VVLLDDGT---------------RIAADMVVVGIG  121 (121)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEET--T--EEEETTSC---------------EEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--C--EEEECCCC---------------EEECCEEEEeeC
Confidence            456777777888999999999999987643  3  36677873               899999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.69  E-value=0.003  Score=45.27  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      |+ .+...+.+..+++|++++.+++|++++  ++...+...++.             ..+++||.||+|+|
T Consensus        61 d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~-------------~~~i~~D~vi~A~G  115 (115)
T d1lvla2          61 DS-ELTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGG-------------QLRLEADRVLVAVG  115 (115)
T ss_dssp             CH-HHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSC-------------CCEECCSCEEECCC
T ss_pred             cc-hhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCC-------------eEEEEcCEEEEecC
Confidence            44 467778888899999999999998884  344333333331             23799999999998

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.67  E-value=0.0032  Score=53.25  Aligned_cols=66  Identities=9%  Similarity=0.137  Sum_probs=51.0

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+..++.+|.+.+++.|++|+.+++++++..+++++. +...+..+          ++...|.|+.||+|||.+...
T Consensus       156 ~G~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~----------g~~~~i~Ak~VvlATGG~~~~  222 (336)
T d2bs2a2         156 TGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVT----------GDIIAYVAKGTLIATGGYGRI  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTT----------CCEEEEECSEEEECCCCCGGG
T ss_pred             CHHHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccC----------CcEEEEecCeEEEeccccccc
Confidence            4678999999999999999999999999998887653 33222111          235679999999999998643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.58  E-value=0.0039  Score=44.92  Aligned_cols=52  Identities=10%  Similarity=0.125  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeE-ecCEEEEc
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTL-IPKLVVNS  110 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~a  110 (287)
                      ..+...+.+.++++|++++++++|++++..+ +.+.|++++|.               ++ .+|.||.|
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~---------------~~~~~D~Vi~A  116 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR---------------IYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSC---------------EEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCC---------------EEEeCCEEEEe
Confidence            4777888888999999999999999998765 45789999983               55 46999988

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.51  E-value=0.0033  Score=45.29  Aligned_cols=57  Identities=14%  Similarity=0.203  Sum_probs=41.9

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      .|+ .+...+.+..+++|++++.+++|+.++..+++ +. +.  +.++              ..++.||.||+|+|
T Consensus        61 ~d~-~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~--------------~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          61 KDN-ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG--------------EMRIETDFVFLGLG  121 (121)
T ss_dssp             CSH-HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE--------------EEEEECSCEEECCC
T ss_pred             ccc-chhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCC--------------CEEEEcCEEEEEEC
Confidence            444 55677777888999999999999999987643 32 22  2222              13799999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.41  E-value=0.0067  Score=43.93  Aligned_cols=59  Identities=12%  Similarity=0.062  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC----CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG----NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~----~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      ..+...+.+.++++|++|+.++.|+.++..+    ....|+...+.++          ++..+.+|.|++|+|
T Consensus        60 ~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSE----------ETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSC----------EEEEEEESEEECCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCC----------cEEEEECCEEEEEeC
Confidence            4567888888999999999999999997643    2355655444222          234578999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.36  E-value=0.0034  Score=45.64  Aligned_cols=54  Identities=20%  Similarity=0.202  Sum_probs=40.2

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS  110 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a  110 (287)
                      ++|+ .+...+.+..+++|+++++++.|++++.++....|.++.+                ++.||.||+|
T Consensus        69 ~~d~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~----------------~i~~D~vi~a  122 (123)
T d1nhpa2          69 YLDK-EFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKN----------------AYDADLVVVA  122 (123)
T ss_dssp             TCCH-HHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSC----------------EEECSEEEEC
T ss_pred             ccch-hhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCC----------------EEECCEEEEE
Confidence            3444 4667777788899999999999999976433234544433                8999999987

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.36  E-value=0.0034  Score=52.87  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHCCc--EEEcCceeEEEEEe--CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           43 SHSLMLSLVGEAENHGT--TFSNNTSVIGGHLE--GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        43 p~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~--~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      -..+..-|...|++.+.  .|+++++|+++...  .+.|.|++.++.               +++||.||+|+|..+...
T Consensus        84 ~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~---------------~~~~~~~i~atG~ls~~~  148 (298)
T d1w4xa1          84 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD---------------RIRARYLIMASGQLSDAL  148 (298)
T ss_dssp             HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC---------------EEEEEEEEECCCSCCCCT
T ss_pred             cchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccc---------------ccccceEEEeeccccccc
Confidence            34555556667888888  59999999999864  357999998873               799999999999877665


Q ss_pred             HHHh
Q 023079          119 AKRF  122 (287)
Q Consensus       119 ~~~~  122 (287)
                      .+.+
T Consensus       149 ~p~~  152 (298)
T d1w4xa1         149 TGAL  152 (298)
T ss_dssp             THHH
T ss_pred             CCcc
Confidence            5444

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.002  Score=54.12  Aligned_cols=45  Identities=13%  Similarity=0.003  Sum_probs=40.3

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +++.|++++.+++|++|..+++++.|+|.+|.               +++||+||+|.++
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~---------------~~~ad~vI~a~p~  261 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTRENVLVETLNHE---------------MYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSSSEEEEETTSC---------------EEEESEEEECSCG
T ss_pred             HHHcCCeEEecCcceEEEecCCeEEEEECCCC---------------EEECCEEEECCCH
Confidence            45679999999999999999999999999983               7999999999875

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.07  E-value=0.0031  Score=45.71  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ..+...+.+.++++|++++++++|+++..  +.  |.++.+                .++||.||.|+|.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~--v~~~~~----------------~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE--EG--VLTNSG----------------FIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS--SE--EEETTE----------------EEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CE--EEeCCC----------------EEECCEEEEEEEe
Confidence            35667777888999999999999988753  33  444444                8999999999994

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.77  E-value=0.0057  Score=50.71  Aligned_cols=49  Identities=10%  Similarity=0.034  Sum_probs=37.3

Q ss_pred             HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      +++.|++++.+++|++|..+++++.|......           +...+++||+||+|++.
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~-----------~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLS-----------KETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSS-----------SCCCEEEESEEEECSCH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecC-----------CCeEEEEeeEEEecCCH
Confidence            45679999999999999999888876543210           11237999999999975

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.54  E-value=0.0062  Score=52.12  Aligned_cols=63  Identities=17%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             HHHHHHHHCC-cEEEcCceeEEEEEeCCe-E--EEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCC-CchHHHHH
Q 023079           49 SLVGEAENHG-TTFSNNTSVIGGHLEGNC-M--NVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKR  121 (287)
Q Consensus        49 ~l~~~a~~~G-v~~~~~~~V~~i~~~~~~-~--~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-~s~~l~~~  121 (287)
                      .++..|++.| ++|+.+++|+.|..++++ +  .|+..  ++.          ..++.+++|+.||+|||+ .+++|+-.
T Consensus       223 ~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~----------~~~~~~i~Ak~VVLaAGai~Tp~LLl~  292 (367)
T d1n4wa1         223 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGK----------LLATKEISCRYLFLGAGSLGSTELLVR  292 (367)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCC----------EEEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             hhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCc----------ceeEEEEecCEEEEecchhcCHHHHHh
Confidence            3456677776 899999999999987543 3  34332  221          112347899999999997 56666533

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.016  Score=48.68  Aligned_cols=61  Identities=10%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           43 SHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        43 p~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      ...++..+++.+.+ .+++++++++|+++..+++++. |.   +.+|             +.+.+.|+.||+|||.++.
T Consensus       133 g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g-------------~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEG-------------TLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTT-------------EEEEEECSCEEECCCCCGG
T ss_pred             hhHHHHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCC-------------cEEEEECCEEEEcCCCccc
Confidence            34556666655554 5899999999999998887653 33   2344             2456899999999998764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=95.17  E-value=0.0064  Score=52.14  Aligned_cols=63  Identities=13%  Similarity=0.078  Sum_probs=41.0

Q ss_pred             HHHHHHHHCC-cEEEcCceeEEEEEeCCe-E--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-CchHHH
Q 023079           49 SLVGEAENHG-TTFSNNTSVIGGHLEGNC-M--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALA  119 (287)
Q Consensus        49 ~l~~~a~~~G-v~~~~~~~V~~i~~~~~~-~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-~s~~l~  119 (287)
                      +++..|.+.| ++++++++|+.|..++++ +  .+...+.. +       ...+..+++||.||+|||+ .+++|+
T Consensus       227 ~~L~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~-~-------~~~~~~~~~A~~VILaAGai~Tp~LL  294 (370)
T d3coxa1         227 TYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQ-G-------NVVATKVVTADRVFFAAGSVGTSKLL  294 (370)
T ss_dssp             THHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTT-S-------CEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCc-c-------ceeeEEEEECCEEEEeeCHHHhHHHH
Confidence            3455566665 899999999999987653 3  33222210 0       0112246999999999995 667666

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.73  E-value=0.029  Score=43.46  Aligned_cols=53  Identities=15%  Similarity=0.035  Sum_probs=41.6

Q ss_pred             HHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           51 VGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .+..+++|++++.+++|++++.+++.+.++. .+|             +++++.+|.+|+|+|.+..
T Consensus        63 ~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g-------------~~~~~~~D~li~a~G~~~~  116 (198)
T d1nhpa1          63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSG-------------EERVENYDKLIISPGAVPF  116 (198)
T ss_dssp             HHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTC-------------CEEEEECSEEEECCCEEEC
T ss_pred             HHHHHHCCcEEEEeeceeeEeeccccceeeecccc-------------cccccccceeeEeecceee
Confidence            3456788999999999999988877777653 333             2457899999999998653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0076  Score=47.87  Aligned_cols=47  Identities=17%  Similarity=0.255  Sum_probs=38.0

Q ss_pred             HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .++++|++++++++|++++..++  .|++++|.               +|.+|+||+|+|.-.+
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~---------------~i~~d~lViAtG~~~~  138 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDN--MVKLNDGS---------------QITYEKCLIATGGTEP  138 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGT--EEEETTSC---------------EEEEEEEEECCCEEEE
T ss_pred             HHHHCCeEEEeCCEEEEeeccCc--eeeeccce---------------eeccceEEEeeeeecc
Confidence            34678999999999999976554  47788883               8999999999995433

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.065  Score=39.92  Aligned_cols=48  Identities=19%  Similarity=0.100  Sum_probs=35.6

Q ss_pred             HHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           49 SLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      .+...++.+|+++.++++|..+.  ++++.+.. +|.             +..+.||.||+|+|
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~-~g~-------------e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKID--DDGLHVVI-NGE-------------TQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEE--TTEEEEEE-TTE-------------EEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEc--CCCCEEec-CCe-------------EEEEECCEEEECCC
Confidence            34566788999999999998875  34555443 331             34799999999998

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.85  E-value=0.016  Score=41.71  Aligned_cols=99  Identities=10%  Similarity=0.090  Sum_probs=56.1

Q ss_pred             cceEEEEEcCCCCC-CCC----ceeeeCCCCCCceeEEeeecCCcEEECCCccccCC--cccccc-----ccccc---cc
Q 023079          136 ARGCYFSLANTKVA-PFK----HLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDG--IDDTLS-----FLNRF---DY  200 (287)
Q Consensus       136 ~~g~~~~~~~~~~~-~~~----~~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~--~~~~~~-----~~~~~---~~  200 (287)
                      +..+|+++++-... ..+    ..-+|+....+..+|+++. .|.+++|........  ..++..     +++.+   ..
T Consensus         4 veHqY~vTepip~l~~~~~~~~~~~~P~vRD~d~~~Y~R~e-~~gll~G~yE~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (119)
T d1pj5a3           4 LAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREH-GDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRL   82 (119)
T ss_dssp             EEEEEEEESCCGGGTTTSCTTTCCCSCEEEEGGGTEEEEEE-TTEEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEE
T ss_pred             ccceEEeecCchHhhhcccccCCCCCCEEEeCCCCEEEEEe-CCeEEEeecCCCCcccccccccccCccCCCcccchhhC
Confidence            77888888653100 000    0111211112444888876 677999976532100  001110     01111   13


Q ss_pred             CCChhhHHHHHHHHhhhCCCCCCCCcccccccccc
Q 023079          201 SVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP  235 (287)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~  235 (287)
                      ..+.+.++..++.+.+++|.|+++.|+..++|...
T Consensus        83 ~~d~d~~~~~~e~a~~r~P~l~~~gi~~~~NGp~s  117 (119)
T d1pj5a3          83 DFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFS  117 (119)
T ss_dssp             CCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHhcCCcccccccceeecCcc
Confidence            34567788899999999999999999988887544

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=93.77  E-value=0.12  Score=41.32  Aligned_cols=45  Identities=24%  Similarity=0.119  Sum_probs=37.1

Q ss_pred             CCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           57 HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        57 ~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      .+..+++ .+|.++..+++.+. |+|.+|.               +|.|+.||+|+|.+.+.
T Consensus        81 ~nL~i~q-~~V~dli~e~~~v~gV~t~~G~---------------~~~AkaVILtTGTFL~G  126 (230)
T d2cula1          81 RPLHLFQ-ATATGLLLEGNRVVGVRTWEGP---------------PARGEKVVLAVGSFLGA  126 (230)
T ss_dssp             TTEEEEE-CCEEEEEEETTEEEEEEETTSC---------------CEECSEEEECCTTCSSC
T ss_pred             cCHHHHh-ccceeeEecccceeeEEecccc---------------EEEEeEEEEccCcceee
Confidence            3788885 57889988888764 9999883               79999999999987654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.41  E-value=0.089  Score=41.89  Aligned_cols=53  Identities=8%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      ...+++++.+++|+++...++++.|++++|.               ++++|.+|.|.|.++..-....
T Consensus       107 ~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~---------------~~~~d~~v~adG~~s~~r~~~~  159 (265)
T d2voua1         107 LFGPERYHTSKCLVGLSQDSETVQMRFSDGT---------------KAEANWVIGADGGASVVRKRLL  159 (265)
T ss_dssp             HHCSTTEETTCCEEEEEECSSCEEEEETTSC---------------EEEESEEEECCCTTCHHHHHHH
T ss_pred             hcccceeecCcEEEEEEeeCCceEEEECCCC---------------EEEEEEEecccccccccccccc
Confidence            3457889999999999998889999999983               8999999999999987664443

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.75  E-value=0.085  Score=44.87  Aligned_cols=69  Identities=19%  Similarity=0.115  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCE-EEEcCCC-CchHHHHH
Q 023079           46 LMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKR  121 (287)
Q Consensus        46 l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-~s~~l~~~  121 (287)
                      ...+++..|.++ +.++++++.|+.|..+++++. |+..+...+        .....++.|++ ||+|||+ .+++|+-.
T Consensus       192 ~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~--------~~~~~~v~a~~eVILsAGai~SP~LLl~  263 (360)
T d1kdga1         192 PVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLG--------PNGFIPVTPKGRVILSAGAFGTSRILFQ  263 (360)
T ss_dssp             HHHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSS--------GGGEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             ccchhhhhhhcccccccccCcEEEEEEEeCCEEEEEEEEecccC--------cceEEEEEECCEEEEechhHhChHHHHh
Confidence            345566666655 589999999999998887754 665432100        11234566655 9999995 67777766


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      .
T Consensus       264 S  264 (360)
T d1kdga1         264 S  264 (360)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.72  E-value=0.19  Score=40.63  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=43.9

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEE-EeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGH-LEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~-~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      +.-..+...|.+.+++.|..+.....+.... .+++.+.|+.. +|             .+.+++||.||-|.|.+|.-
T Consensus       100 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g-------------~~~~i~a~~vVgADG~~S~v  165 (292)
T d1k0ia1         100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDG-------------ERLRLDCDYIAGCDGFHGIS  165 (292)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETT-------------EEEEEECSEEEECCCTTCST
T ss_pred             ecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCC-------------cEEEEEeCEEEECCCCCCcc
Confidence            3446677888888888877666666555444 44566776553 44             13478999999999998743

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=92.69  E-value=0.074  Score=45.70  Aligned_cols=57  Identities=14%  Similarity=0.036  Sum_probs=41.5

Q ss_pred             HHHCCcEEEcCceeEEEEEeCC----e---EEEEecCCcccccCCCCCCCCCceeEecCE-EEEcCCC-CchHHHHHhC
Q 023079           54 AENHGTTFSNNTSVIGGHLEGN----C---MNVYISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKRFI  123 (287)
Q Consensus        54 a~~~Gv~~~~~~~V~~i~~~~~----~---~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-~s~~l~~~~~  123 (287)
                      +++.++++++++.|+.|..+++    +   +.+.+.+|.             +++++|++ ||+|||+ .+++|+...|
T Consensus       235 ~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~-------------~~~v~A~keVILsAGAi~SP~LLl~SG  300 (385)
T d1cf3a1         235 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGN-------------THNVYAKHEVLLAAGSAVSPTILEYSG  300 (385)
T ss_dssp             TTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTE-------------EEEEEEEEEEEECSCTTTHHHHHHHTT
T ss_pred             hcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCC-------------EEEEEeCCEEEEcCchhhCHHHHHhcC
Confidence            4456899999999999976643    3   233455552             45789987 9999996 6678877763

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.49  E-value=0.36  Score=38.25  Aligned_cols=53  Identities=8%  Similarity=0.011  Sum_probs=42.7

Q ss_pred             HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079           55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL  118 (287)
Q Consensus        55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l  118 (287)
                      ...++++.++++|+.+...++++.|.+.++.           ++..+++||.||-|-|.+|.--
T Consensus       117 ~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~-----------~~~~~~~ad~vi~ADG~~S~vr  169 (288)
T d3c96a1         117 RLGQQAVRTGLGVERIEERDGRVLIGARDGH-----------GKPQALGADVLVGADGIHSAVR  169 (288)
T ss_dssp             HHCTTSEEESEEEEEEEEETTEEEEEEEETT-----------SCEEEEEESEEEECCCTTCHHH
T ss_pred             hccCeeeecCcEEEEeeecCCcEEEEEEcCC-----------CCeEEEeeceeeccCCccceee
Confidence            3458899999999999998889888877763           2235799999999999997643

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.57  Score=33.30  Aligned_cols=56  Identities=9%  Similarity=-0.015  Sum_probs=39.5

Q ss_pred             HHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           48 LSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        48 ~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ..+.+.++++ +++++++++|+++.-+++.++ |+..+..+          +++.++.+|-|+++-|.
T Consensus        69 ~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~t----------ge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          69 QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVS----------GDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTT----------CCEEEEECSEEEECSCE
T ss_pred             cccccccccccceeEEcCcceEEEEccccceeeEEEEECCC----------CCEEEEECCEEEEEeCC
Confidence            3455566665 599999999999988766554 55544322          23568999999999873

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=90.05  E-value=0.18  Score=43.26  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=39.9

Q ss_pred             HHHHCCcEEEcCceeEEEEEe--CC--e---EEEEecCCcccccCCCCCCCCCceeEecCE-EEEcCCC-CchHHHHHhC
Q 023079           53 EAENHGTTFSNNTSVIGGHLE--GN--C---MNVYISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKRFI  123 (287)
Q Consensus        53 ~a~~~Gv~~~~~~~V~~i~~~--~~--~---~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-~s~~l~~~~~  123 (287)
                      .+.+.++++++++.|+.|..+  ++  +   +.+.+.++             +++++.|++ ||+|||+ .+++|+...|
T Consensus       240 ~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g-------------~~~~v~A~keVILaAGai~SP~LLl~SG  306 (391)
T d1gpea1         240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKA-------------VNFDVFAKHEVLLAAGSAISPLILEYSG  306 (391)
T ss_dssp             TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETT-------------EEEEEEEEEEEEECSCTTTHHHHHHHTT
T ss_pred             cccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCC-------------eEEEEEeCCEEEEecchhcchHHHHhcC
Confidence            345668999999999998543  22  2   23334444             235789988 9999998 5777877663

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.67  Score=38.32  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-E---EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-N---VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~---V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .-..++.+|.+.+++.+++++.++.++.+... ++.+ .   +...+|             +...+.|+.||+|+|.+..
T Consensus       141 ~G~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g-------------~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         141 TGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETG-------------EVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTC-------------CEEEEEESCEEECCCCCGG
T ss_pred             cHHHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCC-------------cEEEEeccEEEEcCCCccc
Confidence            35678889999999999999999999988764 3332 2   222333             3567999999999998864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.30  E-value=0.37  Score=36.58  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=48.9

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      .+.+..++..+.+++++.|+++... .|.++...++.+.+.+..+                .++++.+++++|..
T Consensus        63 ~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~----------------~~~~~~~~~a~g~~  120 (192)
T d1vdca1          63 GILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSK----------------AILADAVILAIGAV  120 (192)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEECSSE----------------EEEEEEEEECCCEE
T ss_pred             cccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecccce----------------eeeeeeEEEEeeee
Confidence            3667889999999999999999865 6888887777778888776                89999999999974

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.50  E-value=1.6  Score=30.75  Aligned_cols=59  Identities=15%  Similarity=0.107  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079           45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG  112 (287)
                      .++..+.+..++.++.++.+++++++.-++.++. |+..+..+++         +..++.+|-|+++.|
T Consensus        67 ~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e---------~~~~l~~dgvFv~iG  126 (126)
T d1trba2          67 ILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSD---------NIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCC---------CCEEEECSEEEECSC
T ss_pred             HHHHHHHHhhcccceeEecceEEEEEECCCCceEEEEEEECCCCc---------eEEEEECCEEEEEeC
Confidence            3455555555667899999999999988765554 6655542211         124699999999876

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.76  Score=34.54  Aligned_cols=58  Identities=14%  Similarity=0.094  Sum_probs=48.5

Q ss_pred             ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079           41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA  115 (287)
Q Consensus        41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s  115 (287)
                      ..+..+...+...+.+.++.+... .|+.+...++.+.|++..+                .+.++.||+++|.-.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~----------------~~~~~~viva~G~~~  116 (190)
T d1trba1          59 LTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGDNG----------------EYTCDALIIATGASA  116 (190)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEESSC----------------EEEEEEEEECCCEEE
T ss_pred             cchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEeee----------------eEeeeeeeeecceee
Confidence            567788888888999999998864 7888888777788888777                899999999999743

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.23  E-value=0.43  Score=35.02  Aligned_cols=52  Identities=13%  Similarity=-0.010  Sum_probs=38.4

Q ss_pred             HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079           53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF  122 (287)
Q Consensus        53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~  122 (287)
                      ...+.|++++.+++|+.++...  ..+..+++                ++.+|.+|+|+|.-...+.+..
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~----------------~i~~D~li~a~G~~~~~~~~~~  112 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDRGR--KVVITEKG----------------EVPYDTLVLATGAPNVDLARRS  112 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEETTT--TEEEESSC----------------EEECSEEEECCCEECCHHHHHT
T ss_pred             HHHhccceeeeecccccccccc--cccccccc----------------ccccceeEEEEEecCCchhhhc
Confidence            4456799999999998885432  22333434                7999999999999877777665

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=86.20  E-value=0.35  Score=36.86  Aligned_cols=48  Identities=13%  Similarity=0.056  Sum_probs=37.4

Q ss_pred             eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      .-++..++..+.+.+++.|++|+.++.|+             .+.                ...+|.||+|+|++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt-------------~~~----------------~~~~d~vilAtG~~~~  138 (179)
T d1ps9a3          91 KEEFYETLRYYRRMIEVTGVTLKLNHTVT-------------ADQ----------------LQAFDETILASGIPNR  138 (179)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCEEEESCCCC-------------SSS----------------SCCSSEEEECCCEECC
T ss_pred             cchHHHHHHHHHHhhhcCCeEEEeCCEEc-------------ccc----------------cccceeEEEeecCCCc
Confidence            34567888899999999999999998773             233                4568999999997543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.97  E-value=0.49  Score=35.39  Aligned_cols=42  Identities=14%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             HCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079           56 NHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS  114 (287)
Q Consensus        56 ~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~  114 (287)
                      ..+++++.+++|+++..+..  .+++++|.               ++.+|.||+|+|.-
T Consensus        67 ~~~i~~~~~~~v~~i~~~~~--~~~~~~g~---------------~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQAH--TVALSDGR---------------TLPYGTLVLATGAA  108 (183)
T ss_dssp             STTCEEEETCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEE
T ss_pred             cCCeEEEEeccccccccccc--eeEecCCc---------------EeeeeeEEEEEEEE
Confidence            45899999999988866543  46777873               89999999999964

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.90  E-value=0.47  Score=35.03  Aligned_cols=63  Identities=14%  Similarity=0.035  Sum_probs=36.0

Q ss_pred             HHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079           51 VGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL  113 (287)
Q Consensus        51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~  113 (287)
                      ...+...+++++.+.....+...++... |........++.+.....+.+++|.||.||+|.|.
T Consensus        90 ~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3          90 VELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             eeecccccceeEeccccEEEEecCCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            3456678899988888777776665431 22111000000011112334568999999999984

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=85.12  E-value=0.95  Score=36.74  Aligned_cols=57  Identities=11%  Similarity=0.089  Sum_probs=38.5

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCC-------eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGN-------CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP  116 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~-------~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~  116 (287)
                      +.+.+++.|++++.+++++.+..+++       ++ .|...+..+          ++...+.++.||+|+|.+..
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~----------g~~~~~~ak~VilAtGG~~~  208 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNK----------ETVETCHAKAVVLATGGASK  208 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTT----------TEEEEEECSEEEECCCCCGG
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCC----------CcEEEEeecceEEeeecccc
Confidence            33455667999999999999987653       33 343321111          12456899999999998753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.18  E-value=1.3  Score=32.12  Aligned_cols=64  Identities=11%  Similarity=0.020  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCc-ccccCC--CC---CCCCCceeEecCEEEEcCC
Q 023079           47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESK-NLRNWD--GV---SPLQPELTLIPKLVVNSAG  112 (287)
Q Consensus        47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~-~~~~~~--~~---~~~~~~~~i~a~~VV~aaG  112 (287)
                      ...+.+.++++|++|+++++|.++..  +++.+....+. ......  +.   ........+++|.+|+++|
T Consensus        85 ~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtg  154 (156)
T d1djqa2          85 YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG  154 (156)
T ss_dssp             HHHHHHHHHHTTCEEEETEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESC
T ss_pred             HHHHHHHHhhccceEEeccEEEEecC--cceEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEec
Confidence            35566778889999999999998864  34443321110 000000  00   1122345689999999988

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=84.08  E-value=0.18  Score=42.54  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=39.6

Q ss_pred             HHHHHHHCCcEEEcCceeEEEEEeCC---eE-EEEe--cCCcccccCCCCCCCCCceeEecCE-EEEcCCC-CchHHHHH
Q 023079           50 LVGEAENHGTTFSNNTSVIGGHLEGN---CM-NVYI--SESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKR  121 (287)
Q Consensus        50 l~~~a~~~Gv~~~~~~~V~~i~~~~~---~~-~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-~s~~l~~~  121 (287)
                      +...+.+.++++.+++.|+.+..+++   +. .|+.  .++.           .++..+.|++ ||+|||+ .+++|+-.
T Consensus       200 ~l~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~-----------~~~~~v~a~~eVILsAGaI~TP~LLl~  268 (351)
T d1ju2a1         200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGT-----------PHQAFVRSKGEVIVSAGTIGTPQLLLL  268 (351)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSC-----------EEEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred             hhccchhhhhhhhccchhhceeeeccccceeeEEEEEeCCCc-----------eEEEEeecCcEEEEeCccccCHHHHHH
Confidence            44445677899999999999887532   33 2443  3431           1123466655 9999997 55667665


Q ss_pred             h
Q 023079          122 F  122 (287)
Q Consensus       122 ~  122 (287)
                      .
T Consensus       269 S  269 (351)
T d1ju2a1         269 S  269 (351)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.78  E-value=1.7  Score=38.31  Aligned_cols=63  Identities=16%  Similarity=0.100  Sum_probs=49.7

Q ss_pred             eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079           32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVV  108 (287)
Q Consensus        32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV  108 (287)
                      +++.|.=|.   ..+.+++.+.+.-.|+++..++.|.++..+  ++.+ .|.+++|+               ++.|++||
T Consensus       367 pflyp~YG~---gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~---------------~i~~k~vI  428 (491)
T d1vg0a1         367 PFLFPLYGQ---GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQ---------------RIISKHFI  428 (491)
T ss_dssp             SEEEETTCT---THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSC---------------EEECSEEE
T ss_pred             CeEeecCCc---chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCc---------------EEecCeEE
Confidence            455565565   489999999999999999999999999874  4455 47778783               89999998


Q ss_pred             EcCC
Q 023079          109 NSAG  112 (287)
Q Consensus       109 ~aaG  112 (287)
                      ....
T Consensus       429 ~~ps  432 (491)
T d1vg0a1         429 IEDS  432 (491)
T ss_dssp             EEGG
T ss_pred             ECHH
Confidence            7654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=81.83  E-value=0.53  Score=39.05  Aligned_cols=52  Identities=8%  Similarity=0.018  Sum_probs=36.4

Q ss_pred             HCCcEEEcCceeEEEEEeC--CeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079           56 NHGTTFSNNTSVIGGHLEG--NCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA  117 (287)
Q Consensus        56 ~~Gv~~~~~~~V~~i~~~~--~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~  117 (287)
                      +.|+++++++.|+.|..++  +++ .|+..+..+          ++.++++|+.||+|+|++-..
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~----------g~~~~i~a~~vilaaGa~~tp  284 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLIS----------GDRFEIKADVYVLTAGAVHNT  284 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTT----------CCEEEEEEEEEEECSCHHHHH
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCC----------CEEEEEeceEEEeccCccCCH
Confidence            4578999999999998764  334 354332211          235689999999999987654