Citrus Sinensis ID: 023080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHcccHHHHHHHHcccEEEEEccccccHHHHHHHHHHcccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccHcccEEEEEccccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHccccEEEEcccccHHHHHHHHHHHHccEEEEEEccHHHHHHHHccccEccccccEEEEEEcccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHcHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHccccHHHHHHccc
Coil and Loop (DISEMBL)
maalsrlskpsskffaNITRSVyfyssasaapepeiksyfqnhnfarkapkdrnvqwvflgcpgvgkgtyasrlskflgvphiatgDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEagqaggesgfildgfprTVKQAEILEEVMDIDLVVNLKLCEDVLLEKclgrrmcsqcggnfnvaninvkggngnpsismapllppahcmsklitradDTEEVVKERLRVyneksqpvEEFYRNRGKllefdlpggipeswPKLLEALNLDEYEEKQSAAA
Flexible Loop (DISEMBL)
maalsrlskpsskffanITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGgesgfildgFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERlrvyneksqpveefYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA
Low Complexity Region (SEG)
MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVReelassgslsqqlseIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA
Disordered region (IsUnstruct)
*************FFANITRSVYFYSS********IKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE***********SEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNG***ISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE***PVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN************
Disordered Region (DISOPRED)
********************************************************WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN************
Disordered Region (DISEMBL)
*********PSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEY********
Disordered Region (DISPRO)
*****************ITR*V******************************RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q9ZUU1	284	Probable adenylate kinase	yes	no	0.986	0.996	0.736	1e-119
Q8HSW1	288	Adenylate kinase, chlorop	N/A	no	0.909	0.906	0.735	1e-106
Q2RFR8	217	Adenylate kinase OS=Moore	yes	no	0.724	0.958	0.391	4e-37
A4XLR0	215	Adenylate kinase OS=Caldi	yes	no	0.710	0.948	0.367	8e-37
B7IHW7	214	Adenylate kinase OS=Therm	yes	no	0.634	0.850	0.396	4e-36
A6LLN4	214	Adenylate kinase OS=Therm	yes	no	0.665	0.892	0.373	7e-35
A7HM31	218	Adenylate kinase OS=Fervi	yes	no	0.721	0.949	0.368	8e-35
Q250L1	217	Adenylate kinase OS=Desul	yes	no	0.721	0.953	0.351	9e-35
B8G1Y7	217	Adenylate kinase OS=Desul	yes	no	0.721	0.953	0.351	9e-35
B9MKG1	215	Adenylate kinase OS=Caldi	yes	no	0.710	0.948	0.350	9e-35

>sp|Q9ZUU1|KADC1_ARATH Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/288 (73%), Positives = 240/288 (83%), Gaps = 5/288 (1%)

Query: 1   MAALSRLSKPSSKF-FANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVF 59
           MA L R+++ SS F F N   S    +S +++P P    +      +R APKDRNVQWVF
Sbjct: 1   MARLVRVARSSSLFGFGNRFYSTSAEASHASSPSP----FLHGGGASRVAPKDRNVQWVF 56

Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF 119
           LGCPGVGKGTYASRLS  LGVPHIATGDLVREELASSG LSQ+LSEIVNQGKLVSDEII 
Sbjct: 57  LGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEIIV 116

Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179
           +LLSKRLEAG+A GESGFILDGFPRT++QAEIL +V DIDLVVNLKL E+VL++KCLGRR
Sbjct: 117 DLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLVDKCLGRR 176

Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE 239
            CSQCG  FNVA+IN+KG NG P ISM PLLPP  CMSKL+TRADDTEEVVK RLR+YNE
Sbjct: 177 TCSQCGKGFNVAHINLKGENGRPGISMDPLLPPHQCMSKLVTRADDTEEVVKARLRIYNE 236

Query: 240 KSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
            SQP+EE+YR +GKL+EFDLPGGIPESWP+LLEAL LD+YEEKQS AA
Sbjct: 237 TSQPLEEYYRTKGKLMEFDLPGGIPESWPRLLEALRLDDYEEKQSVAA 284

This small ubiquitous enzyme is essential for maintenance and cell growth.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q8HSW1|KADC_SOLTU Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/261 (73%), Positives = 217/261 (83%)

Query: 27  SASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG 86
           +A+A+   + +SY  N +     PK + VQWVFLGCPGVGKGTYASRLS  LGVPHIATG
Sbjct: 28  TAAASETVKSQSYPHNPHSTSVDPKAKTVQWVFLGCPGVGKGTYASRLSTLLGVPHIATG 87

Query: 87  DLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTV 146
           DLVR+EL SSG LS+QL+EIVNQGKLVSDEII NLLSKRLE+G+A GE+GFILDGFPRTV
Sbjct: 88  DLVRDELKSSGPLSKQLAEIVNQGKLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTV 147

Query: 147 KQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM 206
           +QAEIL EV DIDLVVNLKL E VL+EKCLGRR+CS+CG NFNVA+I+V G NG P ISM
Sbjct: 148 RQAEILTEVTDIDLVVNLKLPERVLVEKCLGRRICSECGKNFNVASIDVAGENGAPRISM 207

Query: 207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPES 266
           A L PP     KLITRADDTE +VKERL +Y +KSQPVE+FYR++GKLLEFDLPGGIPES
Sbjct: 208 ARLNPPFTVCFKLITRADDTEAIVKERLSIYWDKSQPVEDFYRSQGKLLEFDLPGGIPES 267

Query: 267 WPKLLEALNLDEYEEKQSAAA 287
           WPKLLE LNLDE E K S AA
Sbjct: 268 WPKLLEVLNLDEQEYKLSPAA 288

This small ubiquitous enzyme is essential for maintenance and cell growth.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q2RFR8|KAD_MOOTA Adenylate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=adk PE=3 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/230 (39%), Positives = 127/230 (55%), Gaps = 22/230 (9%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           ++ V LG PG GKGT A  +++ L +PHI+TGD+ RE +     L +Q    +  G+LV 
Sbjct: 1   MRLVLLGPPGAGKGTQAREINQRLAIPHISTGDMFREAIKRGTPLGRQAEVYIKGGRLVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   L+ +RL   Q    +GF+LDGFPRTV QAE L+  +      +D V+++++  D
Sbjct: 61  DEVTIGLVQERLV--QPDCRNGFLLDGFPRTVAQAEALDSWLSSRGERLDAVIDIEVPRD 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA--HCMSKLITRADDTE 227
            LLE+  GRR+C QCG  ++V          NP     P +P     C   L+ RADDTE
Sbjct: 119 ALLERLTGRRVCRQCGATYHVRY--------NP-----PAVPGKCDACGQDLVQRADDTE 165

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277
             V +RL VYNE++ P+  +YR RG L E D    IP     +  AL  D
Sbjct: 166 ATVNKRLDVYNEQTAPLVNYYRQRGLLKEIDGSQAIPAVILAIGRALGRD 215

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A4XLR0|KAD_CALS8 Adenylate kinase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=adk PE=3 SV=1

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 137/234 (58%), Gaps = 30/234 (12%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           ++ + LG PG GKGT A  LS   G+PHI+TGD++RE + +   L ++  E +++G LV 
Sbjct: 1   MRLIILGAPGAGKGTQAEYLSSRFGIPHISTGDILRENVKNQTELGKKAKEYMDKGLLVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
           DEI+  ++  RL   Q   ++GF+LDGFPRT+ QAE LE+V+      ID V+N+++ ++
Sbjct: 61  DEIVIEIVKNRLM--QDDCKNGFLLDGFPRTIAQAEALEKVLADLGQKIDKVLNIEVPDE 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH------CMSKLITRA 223
            +LE+  GRR+C  CG +F+V                    PP        C  +L  R 
Sbjct: 119 KILERMSGRRICKSCGASFHVV-----------------YRPPKKEGICDICGGQLYQRE 161

Query: 224 DDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277
           DD EE VK+RL VY+ ++QP+ E+Y+N+G L+       I ++  ++L+AL ++
Sbjct: 162 DDKEETVKKRLEVYHAQTQPLIEYYKNKGLLVTAVGQEEIADTTKEVLKALGVE 215

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B7IHW7|KAD_THEAB Adenylate kinase OS=Thermosipho africanus (strain TCF52B) GN=adk PE=3 SV=1

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 123/212 (58%), Gaps = 30/212 (14%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           +  VFLG PG GKGTYA RL + L +PHI+TGD+ RE +AS   L +++ EI+ +G LV 
Sbjct: 1   MNMVFLGPPGAGKGTYAKRLIEMLNIPHISTGDMFREAVASKSELGKKVEEILKRGDLVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
           D++  +++  RL   +   ++GFILDGFPRTV QA+ L+E+M     D+D V+  ++ E+
Sbjct: 61  DDLTNSIVKDRL--SKEDCKNGFILDGFPRTVAQAKALDEIMRSLGKDLDYVIYFEVDEE 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITRA 223
            ++++   RR+CS CG  +N+                   LPP        C   L  R 
Sbjct: 119 EVVKRISNRRICSNCGKIYNLIT-----------------LPPKVDGKCDVCGGTLYQRE 161

Query: 224 DDTEEVVKERLRVYNEKSQPVEEFYRNRGKLL 255
           DD EEVV++R RVY E + PV E+Y+   KL 
Sbjct: 162 DDKEEVVRKRYRVYMENTYPVIEYYQKSNKLF 193

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Thermosipho africanus (strain TCF52B) (taxid: 484019)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A6LLN4|KAD_THEM4 Adenylate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=adk PE=3 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 125/209 (59%), Gaps = 18/209 (8%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           +  VFLG PG GKGTYA  L + LG+PHI+TGD+ REE+++   L +++ +I+ +G+LV 
Sbjct: 1   MNIVFLGPPGAGKGTYAKELKEILGIPHISTGDMFREEISAKSELGRKVEDILKRGELVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
           D++   ++ +RL   +   + GFILDG+PRTV QA+ L+E++     ++   +  ++ ED
Sbjct: 61  DDLTNVIVKERL--SKPDCKKGFILDGYPRTVAQAKALDEILKKLGRELKFAIYFEVSED 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEV 229
           V++++   RR+C  CG  +N+  +  K  NG   +          C  +L  R DD EEV
Sbjct: 119 VVVKRISNRRICKNCGKIYNLITLPPK-INGKCDV----------CGGELYQREDDREEV 167

Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLLEFD 258
           V+ R +VY + + PV E+YR   KL   D
Sbjct: 168 VRRRYKVYMDNTYPVIEYYRKSNKLFTVD 196

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A7HM31|KAD_FERNB Adenylate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=adk PE=3 SV=1

 Score =  147 bits (371), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 18/225 (8%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           +  +FLG PG GKGTYA R+ +   +PHI+TGD+ RE +A    L +++ +IVN G LV 
Sbjct: 1   MNLIFLGPPGAGKGTYAKRVVEKYIIPHISTGDIFREAIAKGTELGRKVQDIVNSGNLVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
           DE+   L+ +RL+  Q   + GFILDG+PRT+ QA+ L E++     ++D  +  ++ E+
Sbjct: 61  DELTNALVEERLK--QDDCKKGFILDGYPRTLNQAQALNEMLKKMGKELDGAIYFEVDEE 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEV 229
            ++++   RR+CS+CG  +NV  +        PS           C   LI R DD E++
Sbjct: 119 TVVQRISTRRVCSKCGKVYNVITL--------PSKVEGIC---DDCGGTLIQRDDDKEDI 167

Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           V+ R RVY EK+ P+ E+Y+N+ KL   D    + E    L   L
Sbjct: 168 VRSRYRVYIEKTSPLIEYYKNQNKLFTLDGRKSVEEVMKILFNIL 212

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) (taxid: 381764)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q250L1|KAD_DESHY Adenylate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=adk PE=3 SV=1

 Score =  147 bits (371), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 18/225 (8%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           ++ + +G PG GKGT A+ L     +PHI+TGD+ R  + +  +L  +  E ++ G LV 
Sbjct: 1   MRAILMGPPGAGKGTQAADLITRYQIPHISTGDMFRAAIKAGTALGMKAKEYMDAGSLVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCED 169
           DE+   ++++RL   +     GF+LDGFPRTV QA+ L+++     M++D V+N+++ E 
Sbjct: 61  DEVTIGIVAERL--AEPDCSKGFLLDGFPRTVAQADALDKILTQLKMNLDGVINIEVPEA 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEV 229
            LLE+  GRR+C QCGG +++          NP  + A       C  +L  R+DDT E 
Sbjct: 119 KLLERLTGRRICRQCGGTYHMVF--------NPPAAEAVC---DKCGGELYQRSDDTLET 167

Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
            K RL+VYN+++QP+ ++YR +G L E +    I +    +++A+
Sbjct: 168 AKNRLQVYNDQTQPLIDYYREKGLLKEINGDQDIAQVLQDIVDAM 212

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B8G1Y7|KAD_DESHD Adenylate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=adk PE=3 SV=1

 Score =  147 bits (371), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 18/225 (8%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           ++ + +G PG GKGT A+ L     +PHI+TGD+ R  + +  +L  +  E ++ G LV 
Sbjct: 1   MRAILMGPPGAGKGTQAADLITRYQIPHISTGDMFRAAIKAGTALGMKAKEYMDAGSLVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCED 169
           DE+   ++++RL   +     GF+LDGFPRTV QA+ L+++     M++D V+N+++ E 
Sbjct: 61  DEVTIGIVAERL--AEPDCSKGFLLDGFPRTVAQADALDKILTQLKMNLDGVINIEVPEA 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEV 229
            LLE+  GRR+C QCGG +++          NP  + A       C  +L  R+DDT E 
Sbjct: 119 KLLERLTGRRICRQCGGTYHMVF--------NPPAAEAVC---DKCGGELYQRSDDTLET 167

Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
            K RL+VYN+++QP+ ++YR +G L E +    I +    +++A+
Sbjct: 168 AKNRLQVYNDQTQPLIDYYREKGLLKEINGDQDIAQVLQDIVDAM 212

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) (taxid: 272564)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B9MKG1|KAD_CALBD Adenylate kinase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=adk PE=3 SV=1

 Score =  147 bits (371), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 137/234 (58%), Gaps = 30/234 (12%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           ++ + LG PG GKGT A  LSK   +PHI+TGD++RE + +   L ++  E +++G LV 
Sbjct: 1   MRLILLGAPGAGKGTQAEYLSKRFSIPHISTGDILRENVKNETELGKKAKEYMDKGLLVP 60

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DEI+  ++  RL   +   ++GF+LDGFPRT+ QAE L++V++     ID V+N+++ ++
Sbjct: 61  DEIVIEIVKDRL--SKEDCKNGFLLDGFPRTIAQAEALDKVLEELGQKIDKVLNIEVPDE 118

Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH------CMSKLITRA 223
            +LE+  GRR+C  CG +F+V                    PP        C  +L  R 
Sbjct: 119 KILERMSGRRICKNCGASFHVI-----------------YRPPQKEGVCDVCGGELYQRE 161

Query: 224 DDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277
           DD EE VK+RL VY+ ++QP+ ++Y+ +G L+       I ++  ++L+AL ++
Sbjct: 162 DDKEETVKKRLEVYHAQTQPLIDYYKAKGLLVVAYGQEEIADTTKEVLKALGIE 215

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
449448699	293	PREDICTED: probable adenylate kinase 1,	0.923	0.904	0.780	1e-119
449532262	293	PREDICTED: LOW QUALITY PROTEIN: probable	0.923	0.904	0.780	1e-119
15228109	284	adenosine kinase [Arabidopsis thaliana]	0.986	0.996	0.736	1e-117
297823551	284	ADK/ATPADK1 [Arabidopsis lyrata subsp. l	0.982	0.992	0.737	1e-117
297736459	286	unnamed protein product [Vitis vinifera]	0.996	1.0	0.714	1e-114
356505178	267	PREDICTED: probable adenylate kinase 1,	0.930	1.0	0.721	1e-112
356537452	285	PREDICTED: probable adenylate kinase 1,	0.989	0.996	0.711	1e-112
356548202	285	PREDICTED: probable adenylate kinase 1,	0.993	1.0	0.703	1e-110
357510549	268	Adenylate kinase [Medicago truncatula] g	0.933	1.0	0.700	1e-109
255568141	296	adenylate kinase 1 chloroplast, putative	0.836	0.810	0.787	1e-109

>gi|449448699|ref|XP_004142103.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Cucumis sativus]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/269 (78%), Positives = 234/269 (86%), Gaps = 4/269 (1%)

Query: 19  TRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFL 78
           T S    S ++A+P P    +  NHN  RK PKDRNVQWVFLGCPGVGKGTYASRL   L
Sbjct: 29  TVSSELASPSTASPSP----FTLNHNLPRKDPKDRNVQWVFLGCPGVGKGTYASRLCNLL 84

Query: 79  GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFI 138
           G+PHIATGDLVREELASS  LS+QLS+IVNQGKLVSDEII NLLSKRL+AG+A GESGFI
Sbjct: 85  GIPHIATGDLVREELASSTPLSRQLSDIVNQGKLVSDEIIINLLSKRLQAGEAKGESGFI 144

Query: 139 LDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGG 198
           LDGFPRT++QAEILEEV+DID+VVNLKL EDVLLEKCLGRR+C QCG NFN+A+INVKG 
Sbjct: 145 LDGFPRTIRQAEILEEVIDIDMVVNLKLREDVLLEKCLGRRICGQCGKNFNIASINVKGE 204

Query: 199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD 258
           NGNP +SM PLLPP HCM+KLITRADDTE VVKERLRVY EKSQPVEEFYR+RGKL+EF+
Sbjct: 205 NGNPGMSMPPLLPPTHCMTKLITRADDTEAVVKERLRVYYEKSQPVEEFYRSRGKLMEFN 264

Query: 259 LPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           LPGGI ESWPKLL+ LNLD++EEK SAAA
Sbjct: 265 LPGGISESWPKLLQVLNLDDFEEKLSAAA 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532262|ref|XP_004173101.1| PREDICTED: LOW QUALITY PROTEIN: probable adenylate kinase 1, chloroplastic-like [Cucumis sativus]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/269 (78%), Positives = 234/269 (86%), Gaps = 4/269 (1%)

Query: 19  TRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFL 78
           T S    S ++A+P P    +  NHN  RK PKDRNVQWVFLGCPGVGKGTYASRL   L
Sbjct: 29  TVSSELASPSTASPSP----FTLNHNLPRKDPKDRNVQWVFLGCPGVGKGTYASRLCNLL 84

Query: 79  GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFI 138
           G+PHIATGDLVREELASS  LS+QLS+IVNQGKLVSDEII NLLSKRL+AG+A GESGFI
Sbjct: 85  GIPHIATGDLVREELASSTPLSRQLSDIVNQGKLVSDEIIINLLSKRLQAGEAKGESGFI 144

Query: 139 LDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGG 198
           LDGFPRT++QAEILEEV+DID+VVNLKL EDVLLEKCLGRR+C QCG NFN+A+INVKG 
Sbjct: 145 LDGFPRTIRQAEILEEVIDIDMVVNLKLREDVLLEKCLGRRICGQCGKNFNIASINVKGE 204

Query: 199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD 258
           NGNP +SM PLLPP HCM+KLITRADDTE VVKERLRVY EKSQPVEEFYR+RGKL+EF+
Sbjct: 205 NGNPGMSMPPLLPPXHCMTKLITRADDTEAVVKERLRVYYEKSQPVEEFYRSRGKLMEFN 264

Query: 259 LPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           LPGGI ESWPKLL+ LNLD++EEK SAAA
Sbjct: 265 LPGGISESWPKLLQVLNLDDFEEKLSAAA 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228109|ref|NP_181262.1| adenosine kinase [Arabidopsis thaliana] gi|29428074|sp|Q9ZUU1.1|KADC1_ARATH RecName: Full=Probable adenylate kinase 1, chloroplastic; Short=AK 1; AltName: Full=ATP-AMP transphosphorylase 1; Flags: Precursor gi|4056480|gb|AAC98046.1| putative adenylate kinase [Arabidopsis thaliana] gi|15010786|gb|AAK74052.1| At2g37250/F3G5.4 [Arabidopsis thaliana] gi|15450419|gb|AAK96503.1| At2g37250/F3G5.4 [Arabidopsis thaliana] gi|15810109|gb|AAL06980.1| At2g37250/F3G5.4 [Arabidopsis thaliana] gi|21553713|gb|AAM62806.1| putative adenylate kinase [Arabidopsis thaliana] gi|330254278|gb|AEC09372.1| adenosine kinase [Arabidopsis thaliana]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/288 (73%), Positives = 240/288 (83%), Gaps = 5/288 (1%)

Query: 1   MAALSRLSKPSSKF-FANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVF 59
           MA L R+++ SS F F N   S    +S +++P P    +      +R APKDRNVQWVF
Sbjct: 1   MARLVRVARSSSLFGFGNRFYSTSAEASHASSPSP----FLHGGGASRVAPKDRNVQWVF 56

Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF 119
           LGCPGVGKGTYASRLS  LGVPHIATGDLVREELASSG LSQ+LSEIVNQGKLVSDEII 
Sbjct: 57  LGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEIIV 116

Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179
           +LLSKRLEAG+A GESGFILDGFPRT++QAEIL +V DIDLVVNLKL E+VL++KCLGRR
Sbjct: 117 DLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLVDKCLGRR 176

Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE 239
            CSQCG  FNVA+IN+KG NG P ISM PLLPP  CMSKL+TRADDTEEVVK RLR+YNE
Sbjct: 177 TCSQCGKGFNVAHINLKGENGRPGISMDPLLPPHQCMSKLVTRADDTEEVVKARLRIYNE 236

Query: 240 KSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
            SQP+EE+YR +GKL+EFDLPGGIPESWP+LLEAL LD+YEEKQS AA
Sbjct: 237 TSQPLEEYYRTKGKLMEFDLPGGIPESWPRLLEALRLDDYEEKQSVAA 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823551|ref|XP_002879658.1| ADK/ATPADK1 [Arabidopsis lyrata subsp. lyrata] gi|297325497|gb|EFH55917.1| ADK/ATPADK1 [Arabidopsis lyrata subsp. lyrata]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/289 (73%), Positives = 242/289 (83%), Gaps = 7/289 (2%)

Query: 1   MAALSRLSKPSSKF-FANITRSVYFYSSASAAPEPEIKSYFQNHNFARK-APKDRNVQWV 58
           MA + R+++ SS F F N      FYS+++ A      S F +   AR+   KDRNVQWV
Sbjct: 1   MARIVRVARSSSLFGFGN-----RFYSTSAEASHASSPSPFLHGGGARRDVAKDRNVQWV 55

Query: 59  FLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEII 118
           FLGCPGVGKGTYASRLS  LGVPHIATGDLVREELASSG LSQ+LSEIVNQGKLVSDEII
Sbjct: 56  FLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEII 115

Query: 119 FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178
            +LLSKRLEAG+A GESGFILDGFPRT++QAEIL +V DIDLVVNLKL E+VL++KCLGR
Sbjct: 116 VDLLSKRLEAGEAKGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLVDKCLGR 175

Query: 179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYN 238
           R CSQCG  FN+A+IN+KG NG P ISM PLLPP HCMSKLITRADDTEEVVK RLR+YN
Sbjct: 176 RTCSQCGKGFNIAHINLKGENGKPGISMDPLLPPPHCMSKLITRADDTEEVVKARLRIYN 235

Query: 239 EKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           E SQP+EE+YR++GKL+EFDLPGGIPESWP+LLEAL LD+YEEKQSA A
Sbjct: 236 ETSQPLEEYYRSKGKLMEFDLPGGIPESWPRLLEALRLDDYEEKQSAVA 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736459|emb|CBI25330.3| unnamed protein product [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/287 (71%), Positives = 238/287 (82%), Gaps = 1/287 (0%)

Query: 1   MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFL 60
           MA ++RL + ++   ++I  S  F S  S      +     +    R+ PKDRNVQWVFL
Sbjct: 1   MAVVNRLLRSTATPSSSIL-SKTFSSITSNTDRRPLSPLSHSALHLRRDPKDRNVQWVFL 59

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           GCPGVGKGTYASRL+  LGVPHIATGDLVREELASSG L+ QLSEIVNQGKLVSDEII N
Sbjct: 60  GCPGVGKGTYASRLTALLGVPHIATGDLVREELASSGPLASQLSEIVNQGKLVSDEIIIN 119

Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180
           LLSKRLEAG++ GE+GFILDGFPRT++QAEILE+V DIDLVVNLKL E+ LL KCLGRR+
Sbjct: 120 LLSKRLEAGESKGETGFILDGFPRTIRQAEILEDVTDIDLVVNLKLNEEALLAKCLGRRI 179

Query: 181 CSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEK 240
           CS+CGGN+NVA I++KG NG+P + MAPLLPP HC SKLITR+DDTE VVKERLR+YNE 
Sbjct: 180 CSECGGNYNVACIDIKGENGSPGMYMAPLLPPPHCASKLITRSDDTEAVVKERLRIYNEM 239

Query: 241 SQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           S PVE+FYR+RGKLLEFDLPGGIPESWPKLL+ALNLD +E+KQSAAA
Sbjct: 240 SLPVEDFYRSRGKLLEFDLPGGIPESWPKLLQALNLDYHEDKQSAAA 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505178|ref|XP_003521369.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Glycine max]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/287 (72%), Positives = 234/287 (81%), Gaps = 20/287 (6%)

Query: 1   MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFL 60
           MAA++RL   +S   +++ R    +SS ++ P  E                +RNVQWVFL
Sbjct: 1   MAAITRLLNRTSSL-SSVARG---FSSHASPPRKE----------------ERNVQWVFL 40

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           GCPGVGKGTYASRL   LGVPHIATGDLVR ELAS+G LS QLSEIVNQGKLVSDEII +
Sbjct: 41  GCPGVGKGTYASRLCNLLGVPHIATGDLVRHELASNGPLSSQLSEIVNQGKLVSDEIIIS 100

Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180
           LLSKRL  G+A GESGFILDGFPRT+KQAEILE V DIDLVVNLKL E+ LL KCLGRR+
Sbjct: 101 LLSKRLADGEAKGESGFILDGFPRTIKQAEILEGVTDIDLVVNLKLQEEALLAKCLGRRI 160

Query: 181 CSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEK 240
           C+QCGGNFN+A+I+VKG NG P + MAPLLPPAHCMSKLI R+DDTE VVKERLR+YNEK
Sbjct: 161 CNQCGGNFNIASISVKGENGRPGMVMAPLLPPAHCMSKLIARSDDTESVVKERLRIYNEK 220

Query: 241 SQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           SQPVE FYR+RGKLLEF+LPGGIPESWPKLL+ALNLD+YEEKQSAAA
Sbjct: 221 SQPVEGFYRSRGKLLEFELPGGIPESWPKLLQALNLDDYEEKQSAAA 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537452|ref|XP_003537241.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Glycine max]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/288 (71%), Positives = 234/288 (81%), Gaps = 4/288 (1%)

Query: 1   MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAP-KDRNVQWVF 59
           M A++RL+K +S F   + R +      S AP  +  S+     F R+     R VQW F
Sbjct: 1   MVAVTRLAKRASTFSPQMRRCLSSSEVKSHAPPHDAASF---RPFPRREDLSKRCVQWAF 57

Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF 119
           LGCPGVGKGTYASRLS  LGVPHIATGDLVR+ELASS  LS QLSEIV QG+LVSDEII 
Sbjct: 58  LGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELASSDPLSSQLSEIVKQGQLVSDEIII 117

Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179
            LLSKRL AG+A G+ GFILDGFPRT+KQAEILE V DIDLV+NLKL EDVLLEKCLGRR
Sbjct: 118 RLLSKRLVAGEAKGDLGFILDGFPRTIKQAEILEGVTDIDLVINLKLREDVLLEKCLGRR 177

Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE 239
           +C+QCGGNFNVA+IN+K  NG+P I MAPLLPP +CMSKLITR+DDTE VVKERLR+YNE
Sbjct: 178 ICNQCGGNFNVASINIKAENGSPEIIMAPLLPPENCMSKLITRSDDTESVVKERLRIYNE 237

Query: 240 KSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
            +QPVEEFYR+RGKLLEF+LPGGIPESWPKLL ALNLD+YE+K+SAAA
Sbjct: 238 MTQPVEEFYRSRGKLLEFNLPGGIPESWPKLLHALNLDDYEDKRSAAA 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548202|ref|XP_003542492.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Glycine max]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/287 (70%), Positives = 235/287 (81%), Gaps = 2/287 (0%)

Query: 1   MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFL 60
           MAA++RL+K  +   +++ R     S  +    P   + F+     R+    R VQWVFL
Sbjct: 1   MAAITRLAK-RAFVVSSLARRCLSSSVVNCHAPPHDATSFRPFPL-REDSSKRCVQWVFL 58

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           GCPGVGKGTYASRLS  LGVPHIATGDLVR+EL SSG LS QLSEIV QG+LVSDEII +
Sbjct: 59  GCPGVGKGTYASRLSNLLGVPHIATGDLVRDELTSSGPLSSQLSEIVKQGQLVSDEIIIS 118

Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180
           LLSKRL AG+A G+ GFILDGFPRT+KQAEILE V DIDLV+NLKL EDVLLEKCLGRR+
Sbjct: 119 LLSKRLVAGEAKGDLGFILDGFPRTIKQAEILEGVTDIDLVINLKLREDVLLEKCLGRRI 178

Query: 181 CSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEK 240
           C+QCGGNFNVA+IN+K  NG+P I MAPLLPP +C+SKLITR+DDTE VVKERLR+YNE 
Sbjct: 179 CNQCGGNFNVASINIKAENGSPGIIMAPLLPPENCISKLITRSDDTEAVVKERLRIYNEM 238

Query: 241 SQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           +QPVEEFYR+RGKLLEF+LPGGIPESWPKLL ALNLD+YE+K+SAAA
Sbjct: 239 TQPVEEFYRSRGKLLEFNLPGGIPESWPKLLHALNLDDYEDKRSAAA 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510549|ref|XP_003625563.1| Adenylate kinase [Medicago truncatula] gi|355500578|gb|AES81781.1| Adenylate kinase [Medicago truncatula] gi|388510510|gb|AFK43321.1| unknown [Medicago truncatula]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/287 (70%), Positives = 227/287 (79%), Gaps = 19/287 (6%)

Query: 1   MAALSRLSKPSSKFFANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVFL 60
           MAA++RL K ++ F+                  P  + +  +        ++RN+QWVFL
Sbjct: 1   MAAITRLVKRTTSFY------------------PLARGFSSSSYSHASPRENRNIQWVFL 42

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           GCPGVGKGTYASRL   LGVPHIATGDLVR EL+S+G LS QLSEIVNQG+LVSDEII +
Sbjct: 43  GCPGVGKGTYASRLCNLLGVPHIATGDLVRHELSSNGPLSSQLSEIVNQGQLVSDEIIMS 102

Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180
           LLSKRL  GQA GESGFILDGFPRT+KQAEILE V DIDLVVNLK+ E+ LL KCLGRR 
Sbjct: 103 LLSKRLAEGQAKGESGFILDGFPRTIKQAEILEGVTDIDLVVNLKIREEALLAKCLGRRT 162

Query: 181 CSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEK 240
           CSQCGGNFNVA+IN+KG NG P ISM PLLPP HCMSKLITR+DDTE VVKERLR+YNE 
Sbjct: 163 CSQCGGNFNVASINIKGENGCPGISMDPLLPPEHCMSKLITRSDDTEPVVKERLRIYNEL 222

Query: 241 SQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           SQPVE FYR+RGKL+EF+LPGGIPESWPKLL ALNLD+ EEKQSAAA
Sbjct: 223 SQPVEGFYRSRGKLMEFELPGGIPESWPKLLHALNLDD-EEKQSAAA 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568141|ref|XP_002525046.1| adenylate kinase 1 chloroplast, putative [Ricinus communis] gi|223535627|gb|EEF37293.1| adenylate kinase 1 chloroplast, putative [Ricinus communis]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/240 (78%), Positives = 215/240 (89%)

Query: 48  KAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIV 107
           + PKDRNVQWVFLGCPGVGKGTYASRLS  LGVPHIATGDLVR+EL SSG L+ QL EIV
Sbjct: 57  RNPKDRNVQWVFLGCPGVGKGTYASRLSNLLGVPHIATGDLVRDELNSSGPLASQLKEIV 116

Query: 108 NQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC 167
           NQGKLVSDEII +LLSKRLE G+A GESGFILDGFPRT++QAEILE V DIDLVVNLKL 
Sbjct: 117 NQGKLVSDEIIISLLSKRLEDGEAKGESGFILDGFPRTIRQAEILEGVTDIDLVVNLKLR 176

Query: 168 EDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTE 227
           E+ LL KCLGRR+CS+CGGN+N+A I++KG NG P + MAPLLPP HC +KLI R+DDTE
Sbjct: 177 EEALLAKCLGRRICSECGGNYNIACIDLKGENGKPGMYMAPLLPPPHCATKLIQRSDDTE 236

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
           EVVK RLR+YNE SQPVE+FYR+RGKLLEF+LPGGIPESWPKLL+ALNL+++E+KQSAAA
Sbjct: 237 EVVKARLRIYNEMSQPVEDFYRHRGKLLEFELPGGIPESWPKLLQALNLEDHEDKQSAAA 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2049842	284	ADK "adenosine kinase" [Arabid	0.986	0.996	0.690	3.4e-100
TAIR|locus:2056098	295	AT2G39270 [Arabidopsis thalian	0.993	0.966	0.585	1.7e-84
TAIR|locus:2082329	263	AT3G01820 [Arabidopsis thalian	0.428	0.467	0.512	1.5e-33
TIGR_CMR|DET_0495	216	DET_0495 "adenylate kinase" [D	0.707	0.939	0.360	8.2e-28
TIGR_CMR|CHY_1340	214	CHY_1340 "adenylate kinase" [C	0.710	0.953	0.328	2.2e-27
UNIPROTKB|Q9KTB7	214	adk "Adenylate kinase" [Vibrio	0.710	0.953	0.336	4.5e-27
TIGR_CMR|VC_0986	214	VC_0986 "adenylate kinase" [Vi	0.710	0.953	0.336	4.5e-27
RGD|2077	239	Ak2 "adenylate kinase 2" [Ratt	0.644	0.774	0.349	2.5e-26
TIGR_CMR|GSU_2836	217	GSU_2836 "adenylate kinase" [G	0.634	0.838	0.360	3.2e-26
UNIPROTKB|E2RE39	241	AK2 "Uncharacterized protein"	0.675	0.804	0.333	5.2e-26

TAIR|locus:2049842 ADK "adenosine kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 199/288 (69%), Positives = 226/288 (78%)

Query:     1 MAALSRLSKPSSKF-FANITRSVYFYSSASAAPEPEIKSYFQNHNFARKAPKDRNVQWVF 59
             MA L R+++ SS F F N   S    +S +++P P    +      +R APKDRNVQWVF
Sbjct:     1 MARLVRVARSSSLFGFGNRFYSTSAEASHASSPSP----FLHGGGASRVAPKDRNVQWVF 56

Query:    60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEIIF 119
             LGCPGVGKGTYASRLS  LGVPHIATGDLVR               IVNQGKLVSDEII 
Sbjct:    57 LGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEIIV 116

Query:   120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179
             +LLSKRLEAG+A GESGFILDGFPRT++QAEIL +V DIDLVVNLKL E+VL++KCLGRR
Sbjct:   117 DLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPEEVLVDKCLGRR 176

Query:   180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE 239
              CSQCG  FNVA+IN+KG NG P ISM PLLPP  CMSKL+TRADDTEEVVK RLR+YNE
Sbjct:   177 TCSQCGKGFNVAHINLKGENGRPGISMDPLLPPHQCMSKLVTRADDTEEVVKARLRIYNE 236

Query:   240 KSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
              SQP+EE+YR +GKL+EFDLPGGIPESWP+LLEAL LD+YEEKQS AA
Sbjct:   237 TSQPLEEYYRTKGKLMEFDLPGGIPESWPRLLEALRLDDYEEKQSVAA 284

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2056098 AT2G39270 [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 174/297 (58%), Positives = 214/297 (72%)

Query:     1 MAALSRLSKPSSKFFANITRSVYFYSSASAAP----EPEIK-----SYFQNHNFARKAP- 50
             MA   RL +P++    N   S++  S +S++     +P+I      +     +    +P 
Sbjct:     1 MAVSHRLLRPATTTIKNTFSSLFIRSLSSSSSGSSLDPKIDLEEAAAQLGKSSSTSTSPY 60

Query:    51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQG 110
             K RN  WVFLGCPGVGKGTYASRLS  LGVPHIATGDLVR               +VN G
Sbjct:    61 KGRNFHWVFLGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSSQLKELVNHG 120

Query:   111 KLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDV 170
             KLV DE I +LLSKRL+AG+  GESG+ILDGFPRTV QAEILE V +IDLV+NLKL E+ 
Sbjct:   121 KLVPDEFIISLLSKRLQAGKDKGESGYILDGFPRTVTQAEILEGVTNIDLVINLKLREEA 180

Query:   171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVV 230
             LL KCLGRR+CS+CGGN+NVA I++KG +  P + M PLLPP +C SKLI+RADDTEEVV
Sbjct:   181 LLAKCLGRRICSECGGNYNVACIDIKGDDDTPRMYMPPLLPPPNCESKLISRADDTEEVV 240

Query:   231 KERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287
             KERLR+YN+ +QPVEEFY+ RGKLLEF+LPGGIPESW +LL AL+L++  +KQSA A
Sbjct:   241 KERLRIYNKMTQPVEEFYKKRGKLLEFELPGGIPESWARLLRALHLED--DKQSAIA 295

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

TAIR|locus:2082329 AT3G01820 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 63/123 (51%), Positives = 76/123 (61%)

Query:    52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGK 111
             DR VQWV +G PG  +  +A RLSK L VPHI+ G LVR                VN+ K
Sbjct:    60 DRGVQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNERK 119

Query:   112 LVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVL 171
             LV   ++F LLSKRLE G A GE+GFIL G PRT  QAE L+++  IDLVVNLK  ED L
Sbjct:   120 LVPKSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLDQIAQIDLVVNLKCSEDHL 179

Query:   172 LEK 174
             + +
Sbjct:   180 VNR 182

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|DET_0495 DET_0495 "adenylate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 80/222 (36%), Positives = 115/222 (51%)

Query:    58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
             +FLG PG GKGT    ++K L + H+ATGDL R                + +G+LV DEI
Sbjct:     5 IFLGAPGSGKGTQGEVVAKELRLAHMATGDLFRKAIERGDELGDTVKSYMERGELVPDEI 64

Query:   118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
               +++ K L AG     SG ILDGFPR+++QAE L+E +      I  V+ + + ED L+
Sbjct:    65 TISVVLKHL-AGLKD-VSGIILDGFPRSLRQAEALDEALVKQGEGIGRVIYINVPEDELV 122

Query:   173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
              +  GR +C  C   +      V  G  +             C  +L  R DDT E VKE
Sbjct:   123 RRLSGRWVCRSCQSPYQCGCAEVAEGKCS------------RCQGELYQRPDDTPETVKE 170

Query:   233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
             RL+VY  K+ P+ E+YR++GKL E D    I E   +++ A+
Sbjct:   171 RLKVYFSKTAPLIEYYRSKGKLSEIDGMAEITEVTKRIVSAI 212

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CHY_1340 CHY_1340 "adenylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 73/222 (32%), Positives = 117/222 (52%)

Query:    58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
             + +G PG GKGT A ++ K  G+ HI+TGD+ R                +++G+LV DEI
Sbjct:     4 LIMGPPGAGKGTQAEKIVKEFGITHISTGDMFRAALKNQTPLGLKAKEYMDKGELVPDEI 63

Query:   118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
             +  ++ +R+ A       GF+LDGFPRT+ QAE L++ +      +D V+N+++  + L+
Sbjct:    64 VIAMVEERISAPDCA--KGFLLDGFPRTIPQAEALDKKLAEMGITLDGVINIEVPREELI 121

Query:   173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
             E+  GRR+C QCG  ++V   N     G   +  A       C  +L  R+DD+ E V  
Sbjct:   122 ERLTGRRVCRQCGATYHV-KFNPPKVEG---VCDA-------CGGELYQRSDDSLETVSN 170

Query:   233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
             RL VY  ++ P++++Y   G L   D    I E +  +  AL
Sbjct:   171 RLDVYEAQTAPLKDYYAKTGLLKNIDGTKSIEEVFASIKNAL 212

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|Q9KTB7 adk "Adenylate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 75/223 (33%), Positives = 119/223 (53%)

Query:    58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
             + LG PG GKGT A  + +  G+P I+TGD++R               +++ G+LVSD+I
Sbjct:     4 ILLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDI 63

Query:   118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCL 176
             I  L+ +R+   QA  E GF+LDGFPRT+ QA+ L+E+ +++D V+   + +DV++E+  
Sbjct:    64 ILGLIKERI--AQADCEKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVERMA 121

Query:   177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV 236
             GRR     G  ++V   N     G   ++             L+ R DD EE V+ RL V
Sbjct:   122 GRRAHLPSGRTYHVV-YNPPKVEGKDDVTG----------EDLVIREDDKEETVRARLNV 170

Query:   237 YNEKSQPVEEFYRNR---GKL--LEFDLPGGIPESWPKLLEAL 274
             Y+ ++ P+ E+Y      GK   L+FD    + E    + +AL
Sbjct:   171 YHTQTAPLIEYYGKEAAAGKTQYLKFDGTKQVSEVSADIAKAL 213

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|VC_0986 VC_0986 "adenylate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 75/223 (33%), Positives = 119/223 (53%)

Query:    58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
             + LG PG GKGT A  + +  G+P I+TGD++R               +++ G+LVSD+I
Sbjct:     4 ILLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDI 63

Query:   118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCL 176
             I  L+ +R+   QA  E GF+LDGFPRT+ QA+ L+E+ +++D V+   + +DV++E+  
Sbjct:    64 ILGLIKERI--AQADCEKGFLLDGFPRTIPQADGLKEMGINVDYVIEFDVADDVIVERMA 121

Query:   177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV 236
             GRR     G  ++V   N     G   ++             L+ R DD EE V+ RL V
Sbjct:   122 GRRAHLPSGRTYHVV-YNPPKVEGKDDVTG----------EDLVIREDDKEETVRARLNV 170

Query:   237 YNEKSQPVEEFYRNR---GKL--LEFDLPGGIPESWPKLLEAL 274
             Y+ ++ P+ E+Y      GK   L+FD    + E    + +AL
Sbjct:   171 YHTQTAPLIEYYGKEAAAGKTQYLKFDGTKQVSEVSADIAKAL 213

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

RGD|2077 Ak2 "adenylate kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 71/203 (34%), Positives = 112/203 (55%)

Query:    55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
             ++ V LG PG GKGT A +L++   V H+ATGD++R                ++ GKLVS
Sbjct:    16 IRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 75

Query:   115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
             DE++  L+ K LE      ++GF+LDGFPRTVKQAE+L+++MD     +D V+   + + 
Sbjct:    76 DEMVVELIEKNLETPSC--KNGFLLDGFPRTVKQAEMLDDLMDKRKEKLDSVIEFSIQDS 133

Query:   170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEV 229
             +L+ +  GR +  + G +++    N         I+  PL          I R+DD E+ 
Sbjct:   134 LLIRRITGRLIHPKSGRSYH-EEFNPPKEAMKDDITGEPL----------IRRSDDNEKA 182

Query:   230 VKERLRVYNEKSQPVEEFYRNRG 252
             +K RL  Y+ ++ P+ E+YR RG
Sbjct:   183 LKTRLEAYHTQTTPLVEYYRKRG 205

GO:0001889 "liver development" evidence=IEP

GO:0004017 "adenylate kinase activity" evidence=IDA;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006119 "oxidative phosphorylation" evidence=IEP

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0036126 "sperm flagellum" evidence=ISO

GO:0046033 "AMP metabolic process" evidence=IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046060 "dATP metabolic process" evidence=IDA

GO:0046083 "adenine metabolic process" evidence=TAS

GO:0097066 "response to thyroid hormone stimulus" evidence=IEP

GO:0097226 "sperm mitochondrial sheath" evidence=IEA;ISO

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IDA

TIGR_CMR|GSU_2836 GSU_2836 "adenylate kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 74/205 (36%), Positives = 115/205 (56%)

Query:    58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
             VFLG PG GKGT A+ L++   VP I+TG+++R                ++QG LV D +
Sbjct:     4 VFLGPPGAGKGTQANLLTRTYEVPQISTGEILRAAVKSKTPMGVKAKEYMDQGALVPDSV 63

Query:   118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
             +  ++ +RL +      SGFILDGFPRTV QA+ L++V+      I+ VV+ ++ + VLL
Sbjct:    64 VVGIVEERLASPDCA--SGFILDGFPRTVAQADALKQVLGALGKQIEHVVSFEVDKGVLL 121

Query:   173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA--HCMSKLITRADDTEEVV 230
             E+ +GRR+C  CG  F+V          +P     PL+      C  +L  R DD E+ +
Sbjct:   122 ERIVGRRVCRACGRAFHV--------KFDP-----PLVDGVCDACGGELYQRDDDREDTM 168

Query:   231 KERLRVYNEKSQPVEEFYRNRGKLL 255
             + RL VY+E++ P++ +Y    +LL
Sbjct:   169 RRRLEVYDEQTAPLKSYYEGE-RLL 192

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|E2RE39 AK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 71/213 (33%), Positives = 117/213 (54%)

Query:    46 ARKAPKD-RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXX 104
             A  AP+  + ++ V LG PG GKGT A +L++   V H+ATGD++R              
Sbjct:     8 AEPAPESPKGIRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLK 67

Query:   105 XIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----ID 159
               ++ GKLVSDE++  L+ K LE  Q   ++GF+LDGFPRTV+QAE+L+++M+     +D
Sbjct:    68 ATMDAGKLVSDEMVVELIEKNLETPQC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLD 125

Query:   160 LVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKL 219
              V+   + + +L+ +  GR +    G +++    N         I+  PL          
Sbjct:   126 SVIEFSIPDSLLIRRITGRLIHPLSGRSYH-EEFNPPKEPMKDDITGEPL---------- 174

Query:   220 ITRADDTEEVVKERLRVYNEKSQPVEEFYRNRG 252
             + R+DD E+ +K RL  Y+ ++ P+ ++YR RG
Sbjct:   175 VRRSDDNEKALKIRLEAYHTQTTPLVDYYRKRG 207

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUU1	KADC1_ARATH	2, ., 7, ., 4, ., 3	0.7361	0.9860	0.9964	yes	no
Q8HSW1	KADC_SOLTU	2, ., 7, ., 4, ., 3	0.7356	0.9094	0.9062	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.983
3rd Layer	2.7.4.3	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ADK	ADK (ADENOSINE KINASE); adenylate kinase/ nucleotide kinase; encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth ; This small ubiquitous enzyme is essential for maintenance and cell growth (By similarity) (284 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RNR1	RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding / ribonucleoside-diphosphate r [...] (816 aa)						•	•		0.921
	ATAPY1	ATAPY1 (APYRASE 1); ATPase/ calmodulin binding / nucleotide diphosphatase; Encodes an enzyme wi [...] (471 aa)				•		•	•		0.917
	ATAPY2	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2); ATPase/ nucleotide diphosphatase; Encodes an enzyme wi [...] (630 aa)						•	•		0.913
	RNR2A	RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase; Encodes one of the 3 [...] (341 aa)						•	•		0.913
	TSO2	TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ tra [...] (332 aa)						•	•		0.912
	RIF10	RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid [...] (922 aa)						•	•		0.909
	NDPK1	NDPK1; ATP binding / nucleoside diphosphate kinase; nucleoside diphosphate kinase type 1 (NDPK1 [...] (169 aa)						•	•		0.907
	AT1G36280	adenylosuccinate lyase, putative / adenylosuccinase, putative; adenylosuccinate lyase, putative [...] (527 aa)						•			0.907
	AT4G18440	adenylosuccinate lyase, putative / adenylosuccinase, putative; adenylosuccinate lyase, putative [...] (536 aa)						•			0.907
	AT5G14580	polyribonucleotide nucleotidyltransferase, putative; polyribonucleotide nucleotidyltransferase, [...] (991 aa)						•	•		0.906

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	1e-159
TIGR01351	210	TIGR01351, adk, adenylate kinase	2e-86
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	4e-72
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	1e-66
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	2e-63
pfam00406	186	pfam00406, ADK, Adenylate kinase	2e-55
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	7e-44
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	1e-43
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	2e-42
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	3e-38
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	1e-37
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	4e-35
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	5e-33
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	7e-32
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	4e-30
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	7e-30
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	1e-29
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	5e-28
PLN02674	244	PLN02674, PLN02674, adenylate kinase	3e-27
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	8e-24
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	2e-17
pfam13207	114	pfam13207, AAA_17, AAA domain	3e-08
cd02020	147	cd02020, CMPK, Cytidine monophosphate kinase (CMPK	7e-04
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	0.001
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	0.002
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	0.003
COG1936	180	COG1936, COG1936, Predicted nucleotide kinase (rel	0.004

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  442 bits (1138), Expect = e-159
 Identities = 190/241 (78%), Positives = 210/241 (87%), Gaps = 1/241 (0%)

Query: 47  RKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEI 106
           R   K RNV WVFLGCPGVGKGTYASRLSK LGVPHIATGDLVREE+ SSG L  QL EI
Sbjct: 22  RSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEI 81

Query: 107 VNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKL 166
           VNQGKLV DEIIF+LLSKRLEAG+  GESGFILDGFPRTV+QAEILE V DIDLVVNLKL
Sbjct: 82  VNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKL 141

Query: 167 CEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDT 226
            E+VL+EKCLGRR+CS+CG NFNVA+I++KG +G P I M PLLPP  C SKLITRADDT
Sbjct: 142 REEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDT 201

Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAA 286
           EEVVK RLRVY E+SQPVE+FYR RGKLLEF+LPGGIPE+WP+LL+ALNLD  E+K+SAA
Sbjct: 202 EEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLD-DEDKRSAA 260

Query: 287 A 287
           A
Sbjct: 261 A 261

Length = 261

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  256 bits (657), Expect = 2e-86
 Identities = 91/222 (40%), Positives = 135/222 (60%), Gaps = 14/222 (6%)

Query: 56  QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD 115
           + V LG PG GKGT A R+++  G+PHI+TGDL+R E+ +   L ++  E + +G+LV D
Sbjct: 1   RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLE 173
           EI+  L+ +RL   Q   E+GFILDGFPRT+ QAE L+ ++   ID V+ L + ++ L+E
Sbjct: 61  EIVNQLVKERLTQNQD-NENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVE 119

Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
           +  GRR+C  CG  +++     K                      LI R DDTEEVVK+R
Sbjct: 120 RLSGRRICPSCGRVYHLKFNPPKVP-----------GCDDCTGELLIQREDDTEEVVKKR 168

Query: 234 LRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           L VY E+++P+ ++Y+ RG L++ D  G I E W ++LEAL 
Sbjct: 169 LEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  219 bits (561), Expect = 4e-72
 Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 25/207 (12%)

Query: 56  QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD 115
           + + LG PG GKGT A RL+K  G+PHI+TGDL+REE+AS   L ++  E ++ GKLV D
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD----IDLVVNLKLCEDVL 171
           EI+  LL +RL+  +   + GFILDGFPRTV QAE L+E++D     D V+ L + ++VL
Sbjct: 61  EIVIKLLKERLK--KPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVL 118

Query: 172 LEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK 231
           +E+ LGRR+C   G  ++                   L         L  R+DD EE +K
Sbjct: 119 IERILGRRICPVSGRVYH-------------------LGKDDVTGEPLSQRSDDNEETIK 159

Query: 232 ERLRVYNEKSQPVEEFYRNRGKLLEFD 258
           +RL VY E++ P+ ++Y+ +GKL+E D
Sbjct: 160 KRLEVYKEQTAPLIDYYKKKGKLVEID 186

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  206 bits (528), Expect = 1e-66
 Identities = 81/228 (35%), Positives = 133/228 (58%), Gaps = 30/228 (13%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + LG PG GKGT A  +++  G+PHI+TGD++R  + +   L ++    ++ G+LV DEI
Sbjct: 4   ILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEI 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLL 172
           +  L+ +RL   Q   ++GF+LDGFPRT+ QAE L+E+     + +D V+ + + ++ L+
Sbjct: 64  VIGLVKERLA--QPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELV 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITRADDT 226
           E+  GRR+C  CG  ++V                    PP        C  +LI RADD 
Sbjct: 122 ERLSGRRICPACGRTYHVKF-----------------NPPKVEGKCDVCGEELIQRADDN 164

Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           EE V++RL VY++++ P+ ++Y+ +GKL + D  G I E +  +L+AL
Sbjct: 165 EETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKAL 212

Length = 215

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score =  198 bits (506), Expect = 2e-63
 Identities = 80/217 (36%), Positives = 129/217 (59%), Gaps = 12/217 (5%)

Query: 53  RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL 112
             ++ V  G PGVGKGT+A  LSK   + HI  G+++REE+ +  ++ +++ ++V  G L
Sbjct: 5   GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNL 64

Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLL 172
           V D ++  ++   +         GFILDGFPR +KQ + L ++ +IDL VN+ L  ++L+
Sbjct: 65  VPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILI 124

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMS-----KLITRADDTE 227
           +K LGRR+C+ C  NFN+A+I       +    M P+LPPA C       KL  R+DDTE
Sbjct: 125 KKLLGRRICNTCNRNFNIAHIR------SDPYDMPPILPPADCEGCKGNPKLQKRSDDTE 178

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRG-KLLEFDLPGGI 263
           E+V  RL  Y   + P+ +F++N    L++F++  G+
Sbjct: 179 EIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGL 215

Length = 229

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  176 bits (449), Expect = 2e-55
 Identities = 77/201 (38%), Positives = 123/201 (61%), Gaps = 21/201 (10%)

Query: 59  FLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEII 118
            LG PG GKGT A R+ +  G+PH++TGDL+R E+ S   L ++  E +++G+LV DE++
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 119 FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEK 174
             L+ +RLE  Q   ++GF+LDGFPRTV QAE LEE++     +D V+   + ++VL+E+
Sbjct: 61  IGLVKERLE--QNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVER 118

Query: 175 CLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH--CMSKLITRADDTEEVVKE 232
             GRR+    G ++++          NP     P +P         L  R+DD EE VK+
Sbjct: 119 LTGRRIHPNSGRSYHLEF--------NP-----PKVPGKDDVTGEPLSQRSDDNEETVKK 165

Query: 233 RLRVYNEKSQPVEEFYRNRGK 253
           RL  Y+++++PV ++Y+ +GK
Sbjct: 166 RLETYHKQTEPVIDYYKKKGK 186

Length = 186

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  148 bits (375), Expect = 7e-44
 Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 32/226 (14%)

Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVR----EELASSGSLSQQLSEIVNQGKLVSD 115
           LG PG GKGT +S L++  GV H+ TGD +R     +++   +      E ++ G+LV D
Sbjct: 9   LGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPD 68

Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC 175
            ++  ++ + L    A    GF+LDG+PR ++QAE LE + D+D+V+ L + E+ L+++ 
Sbjct: 69  AVVNEIVEEALS--DA---DGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRL 123

Query: 176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITRADDTEEV 229
            GRR+C  CG N++V                     P        C  +LI R DDTEE 
Sbjct: 124 TGRRVCPDCGANYHVE-----------------FNQPEEEGVCDECGGELIQRDDDTEET 166

Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           V+ERL V+ E ++PV E YR++G L+E D      E W  + +A++
Sbjct: 167 VRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212

Length = 215

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  146 bits (371), Expect = 1e-43
 Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 49/206 (23%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +FLG PG GKGT A  L++ L +PHI+TGD++R+ +     L  +    +++G+LV D++
Sbjct: 5   IFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQL 64

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           + +L+ +RL   Q    +G+ILDGFPR V QA  L+E++       + VVNL + +DV++
Sbjct: 65  VLDLVQERL--QQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVV 122

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+ L R                                           R DDTEEV++ 
Sbjct: 123 ERLLAR------------------------------------------GRKDDTEEVIRR 140

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFD 258
           RL VY E++ P+ ++YR+R KLL  D
Sbjct: 141 RLEVYREQTAPLIDYYRDRQKLLTID 166

Length = 184

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  143 bits (362), Expect = 2e-42
 Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 48/199 (24%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + LG PG GK T A +L+K LG+PH+ TGD++R  +A    L +++ + +++G+LV DEI
Sbjct: 4   LILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEI 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
           +  L+ +RL+  +A  ++GFILDGFPRT+ QA  L+ ++      +D+V+ L + E++LL
Sbjct: 64  VNGLVKERLD--EADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLL 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+ LGRR+                                         R DD EE VK+
Sbjct: 122 ERLLGRRV-----------------------------------------REDDNEETVKK 140

Query: 233 RLRVYNEKSQPVEEFYRNR 251
           RL+VY+E++ P+ E+Y   
Sbjct: 141 RLKVYHEQTAPLIEYYSVT 159

Length = 178

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score =  133 bits (336), Expect = 3e-38
 Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 13/215 (6%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           VFLG PG GKGT A  LS  L   HI+TGDL RE + +S  L +++ +IV  G+LV D I
Sbjct: 4   VFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSI 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
              ++  ++          FILDGFPR + QA+ L++ +    ++N  + E++L+++  G
Sbjct: 64  TIKIVEDKINT--IKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSG 121

Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
           RR+C  C   FN+  +  K         +  +     C   L  R DD EE +K RL+ Y
Sbjct: 122 RRICKSCNNIFNIYTLPTK------EKGICDV-----CKGDLYQRKDDKEESLKTRLQEY 170

Query: 238 NEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLE 272
             +++P+ EFY    +L   D    I E   KL+E
Sbjct: 171 KLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIE 205

Length = 211

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  131 bits (330), Expect = 1e-37
 Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 50/213 (23%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +FLG PG GKGT A+RL    G+ H++TGDL+R E+A+  +L Q+   ++N+G+LVSD +
Sbjct: 6   LFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDAL 65

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           +  ++  +L+A  +G   G++LDGFPRTV QAE LE +++     I+ VV L+L + VL+
Sbjct: 66  VLAIVESQLKALNSG---GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLI 122

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+ L R                                           RADD E V++ 
Sbjct: 123 ERLLAR------------------------------------------GRADDNEAVIRN 140

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPE 265
           RL VY EK+ P+ + YR RG L   +  G I  
Sbjct: 141 RLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEA 173

Length = 183

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  124 bits (313), Expect = 4e-35
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 45/211 (21%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +  G P  GKGT A RL +  G+  ++TGD++R  +AS   L Q++  I+++G+LVSDEI
Sbjct: 4   ILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEI 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           +  L+ +RL   +A G  G I DGFPRTV QAE L++++      ID+V+ LK+ ++ L+
Sbjct: 64  VIALIEERLPEAEAAG--GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALI 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+ + +R   Q                                      R DD  EV   
Sbjct: 122 ER-IVKRFEEQ-------------------------------------GRPDDNPEVFVT 143

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGI 263
           RL  YN ++ P+  +Y  +GKL E D  G I
Sbjct: 144 RLDAYNAQTAPLLPYYAGQGKLTEVDGMGSI 174

Length = 188

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score =  126 bits (317), Expect = 5e-33
 Identities = 63/193 (32%), Positives = 110/193 (56%), Gaps = 21/193 (10%)

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           G P  GKGT    +    G+ HI+TGDL+R E+++   + ++  E +N G+LV DEI+  
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRR 179
           +++ RL    A  E G++LDG+PR+  QA+ LE++ +  D+ + L + +++L+++C+GRR
Sbjct: 64  MVTGRLSREDA-KEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122

Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA--HCMSKLITRADDTEEVVKERLRVY 237
           +    G  +++ N                  PP      ++LITR DDTEE VK RL++Y
Sbjct: 123 LDPVTGKIYHIKN-----------------FPPESEEIKARLITRPDDTEEKVKARLQIY 165

Query: 238 NEKSQPVEEFYRN 250
            + ++ +   Y +
Sbjct: 166 KKNAEAILSTYSD 178

Length = 505

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  116 bits (292), Expect = 7e-32
 Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 48/223 (21%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +FLG PG GKGT A RL++ LG+  ++TGD++R+ +A    L Q+   I+  G LV DE+
Sbjct: 10  IFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDEL 69

Query: 118 IFNLLSKRLEAGQAGGESG-FILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVL 171
           I  L+   L    AG E    I DGFPRT+ QAE L+ +++     +  VV L++ ++ L
Sbjct: 70  ILALIRDEL----AGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEEL 125

Query: 172 LEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK 231
           + + + R                                      ++   R+DD EE V+
Sbjct: 126 IRRIVER--------------------------------------ARQEGRSDDNEETVR 147

Query: 232 ERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
            R +VY E++QP+ ++Y  RG L   D  G   E + ++L+AL
Sbjct: 148 RRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190

Length = 191

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  111 bits (279), Expect = 4e-30
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 45/213 (21%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +F+G PG GKGT A  L + L +P I+TGD++RE + +  ++  +    ++ G LV D +
Sbjct: 5   IFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSV 64

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLL 172
           +  ++  R+   +A  ++GF+LDGFPRTV+QA+ L+ +       ID  +NL++ +  LL
Sbjct: 65  VIGIIKDRIR--EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELL 122

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           ++ LGR                   G                       RADD E  +K 
Sbjct: 123 KRLLGRA---------------EIEG-----------------------RADDNEATIKN 144

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPE 265
           RL  YN+K+ P+ +FY  + KL + +  G + E
Sbjct: 145 RLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEE 177

Length = 186

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score =  114 bits (287), Expect = 7e-30
 Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 39/206 (18%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + LG PG GKGT A RL +  G+  ++TGD++R  +A+   +  +  +I+  G LV DE+
Sbjct: 4   ILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEV 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLL 172
           +  ++S R+E  Q    +GFILDGFPRTV QAE L+ +     + +D VV L++ E  LL
Sbjct: 64  VVGIISDRIE--QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALL 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
            +   R           VA +  +G                        RADDT EV+ +
Sbjct: 122 ARVETR-----------VAEMRARGEE---------------------VRADDTPEVLAK 149

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFD 258
           RL  Y  +++P+  +Y  + KLL  D
Sbjct: 150 RLASYRAQTEPLVHYYSEKRKLLTVD 175

Length = 333

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  110 bits (276), Expect = 1e-29
 Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 45/220 (20%)

Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF 119
           LG PG GKGT  +++ +  G  H++ GDL+R E+ S     + +  ++  GK+V  E+  
Sbjct: 5   LGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV 64

Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD----IDLVVNLKLCEDVLLEKC 175
            LL     A QA G   F++DGFPR  +  E  E++MD       V+     E+V++++ 
Sbjct: 65  KLLKN---AIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRL 121

Query: 176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLR 235
           L R    Q  G                                   R DD  E +K+R R
Sbjct: 122 LKR---GQSSG-----------------------------------RVDDNIESIKKRFR 143

Query: 236 VYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
            YNE++ PV E Y N+GK+ E +  G + E +  + +   
Sbjct: 144 TYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIFA 183

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  106 bits (265), Expect = 5e-28
 Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 40/217 (18%)

Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF 119
           +G PG GKGT   ++ +  G  H++TGDL+R E+AS     +QL  I+  G LV  + + 
Sbjct: 9   VGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVL 68

Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE-EVMDIDLVVNLKLCEDVLLEKCLGR 178
           +LL   + A   G   GF++DG+PR VKQ E  E  +    LV+     ED ++++ L R
Sbjct: 69  DLLKDAMVA-ALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKR 127

Query: 179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYN 238
              S                                       R DD E+ +K+RL  Y 
Sbjct: 128 AETS--------------------------------------GRVDDNEKTIKKRLETYY 149

Query: 239 EKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           + ++PV  +Y  +GKL + +  G + + + ++  A++
Sbjct: 150 KATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score =  105 bits (264), Expect = 3e-27
 Identities = 62/204 (30%), Positives = 112/204 (54%), Gaps = 18/204 (8%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + +G PG GKGT +  +     + H+ATGD++R  +A+   L  +  E +++G+LVSD++
Sbjct: 35  ILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 94

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           +  ++ + ++  +   + GFILDGFPRTV QA+ L+E++      ID V+N  + + +L 
Sbjct: 95  VVGIIDEAMK--KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILE 152

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+  GR +    G  ++      K   G   ++  P          LI R DDT  V+K 
Sbjct: 153 ERITGRWIHPSSGRTYHTKFAPPK-VPGVDDVTGEP----------LIQRKDDTAAVLKS 201

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLE 256
           RL  ++++++PV ++Y  +G +  
Sbjct: 202 RLEAFHKQTEPVIDYYAKKGVVAN 225

Length = 244

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 95.9 bits (239), Expect = 8e-24
 Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 36/237 (15%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +  G  G GKGT  + + K   + HI +G + RE +     L ++  E +++G LV D+I
Sbjct: 4   LIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDI 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLL 172
              ++ + L   +  G++G++LDGFPR   QAE L E      M +D V+ + L  +V  
Sbjct: 64  TIPMILETL---KQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAK 120

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPS-ISMAPLLPPAH----CMSKLITRADDT- 226
            + +GRR+C              K  N +P+ I +  + P       C  +L TRADD  
Sbjct: 121 NRIMGRRLC--------------KNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQD 166

Query: 227 EEVVKERLRVY---NEKSQPVEEFYRNRG-----KLLEFDLPGGIPESWPKLLEALN 275
           EE + +R  +Y      +     F+++       K +E D  G I E    LL+ L+
Sbjct: 167 EEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQLS 223

Length = 223

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 79.2 bits (195), Expect = 2e-17
 Identities = 54/230 (23%), Positives = 102/230 (44%), Gaps = 46/230 (20%)

Query: 49  APKDRNVQWVF-LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIV 107
           + K++     F LG PG GKGT   ++ +  G  H++ GDL+R E+AS+      +   +
Sbjct: 37  SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTI 96

Query: 108 NQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLK 165
            +GK+V  E+   L+ K +E+      + F++DGFPRT +     E ++  + ++V+   
Sbjct: 97  KEGKIVPSEVTVKLIQKEMESSD---NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFD 153

Query: 166 LCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD 225
             E+ ++++ L R                                           R DD
Sbjct: 154 CPEEEMVKRVLNRNQ----------------------------------------GRVDD 173

Query: 226 TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
             + +K+RL+V+N  + PV ++Y  +GKL   +  G + E + ++     
Sbjct: 174 NIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFA 223

Length = 234

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 13/120 (10%)

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           G PG GK T A +L++ LG+P I+  DL+REE   +     +L +I    +L+ +EI+  
Sbjct: 6   GPPGSGKSTLAKKLAEKLGIPVISLDDLLREE-GLAELDDGELDDIDIDLELL-EEILDE 63

Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180
           L  +            +++DG   +  +  + E  + + L + L  C   LL++ L R  
Sbjct: 64  LAKQE-----------WVIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKRRLQRGR 112

Length = 114

>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           G  G GK T A  L+K LG+P++ TG +  EE+    S    + E+         + +  
Sbjct: 6   GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEV--------RKALDE 57

Query: 121 LLSKRLEAGQAGGESGFILDG 141
              +         + G +L+G
Sbjct: 58  RQRE------LAKKPGIVLEG 72

Length = 147

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 61 GCPGVGKGTYASRLSKFLGVPHIATGDLVRE 91
          G PG GK T A  L++ LG+  ++ G + RE
Sbjct: 7  GLPGSGKTTVARELAEHLGLKLVSAGTIFRE 37

Length = 179

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           G PG GK T A  L++ L +  I+ GD+ RE  A  G    +      +   +  +I
Sbjct: 7   GPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKI 63

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 61 GCPGVGKGTYASRLSKFLGVPHIATGDLVRE 91
          G PG GK T A  L++ LG+ H++ G++ RE
Sbjct: 7  GPPGSGKTTVARLLAEKLGLKHVSAGEIFRE 37

Length = 180

>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 27/121 (22%)

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS--DEII 118
           G PGVGK T    L + LG   I   +L +E    +     + S IV+  KL    +E++
Sbjct: 7   GTPGVGKTTVCKLLRE-LGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL 65

Query: 119 FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLG 177
                          E   I+D           L  ++ D DLVV L+   +VL E+  G
Sbjct: 66  R--------------EGSGIVDS---------HLSHLLPDCDLVVVLRADPEVLYERLKG 102

Query: 178 R 178
           R
Sbjct: 103 R 103

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PLN02459	261	probable adenylate kinase	100.0
PLN02674	244	adenylate kinase	100.0
PRK14526	211	adenylate kinase; Provisional	100.0
PTZ00088	229	adenylate kinase 1; Provisional	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK00279	215	adk adenylate kinase; Reviewed	100.0
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
PRK14530	215	adenylate kinase; Provisional	100.0
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PLN02842	505	nucleotide kinase	100.0
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
PLN02200	234	adenylate kinase family protein	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
PRK02496	184	adk adenylate kinase; Provisional	100.0
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.97
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.96
PRK01184	184	hypothetical protein; Provisional	99.77
PRK13974	212	thymidylate kinase; Provisional	99.76
PRK03839	180	putative kinase; Provisional	99.75
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.74
PRK13973	213	thymidylate kinase; Provisional	99.74
PRK08356	195	hypothetical protein; Provisional	99.71
PRK06217	183	hypothetical protein; Validated	99.7
PRK13949	169	shikimate kinase; Provisional	99.69
PRK13948	182	shikimate kinase; Provisional	99.67
PRK13975	196	thymidylate kinase; Provisional	99.63
PRK08233	182	hypothetical protein; Provisional	99.63
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.62
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.62
PRK13946	184	shikimate kinase; Provisional	99.62
PLN02924	220	thymidylate kinase	99.61
PRK03731	171	aroL shikimate kinase II; Reviewed	99.61
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.61
PHA02530	300	pseT polynucleotide kinase; Provisional	99.61
PRK00625	173	shikimate kinase; Provisional	99.6
PRK13947	171	shikimate kinase; Provisional	99.6
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.6
PRK04040	188	adenylate kinase; Provisional	99.59
PRK05057	172	aroK shikimate kinase I; Reviewed	99.57
PRK00698	205	tmk thymidylate kinase; Validated	99.57
PRK00131	175	aroK shikimate kinase; Reviewed	99.57
PRK04182	180	cytidylate kinase; Provisional	99.56
PRK08118	167	topology modulation protein; Reviewed	99.56
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.56
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.55
PLN02199	303	shikimate kinase	99.55
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.55
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.54
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.54
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.53
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.53
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.52
PRK06762	166	hypothetical protein; Provisional	99.52
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.52
PLN02422	232	dephospho-CoA kinase	99.52
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.51
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.51
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.49
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.49
PTZ00451	244	dephospho-CoA kinase; Provisional	99.48
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.48
PRK13976	209	thymidylate kinase; Provisional	99.48
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.47
PRK07933	213	thymidylate kinase; Validated	99.47
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.46
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.45
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.45
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.44
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.43
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.43
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.42
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.41
PRK07261	171	topology modulation protein; Provisional	99.41
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.4
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.4
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.4
PRK14738	206	gmk guanylate kinase; Provisional	99.39
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.38
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.37
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.35
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.35
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.35
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.33
PRK09825	176	idnK D-gluconate kinase; Provisional	99.32
PRK14737	186	gmk guanylate kinase; Provisional	99.31
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.31
PRK05480	209	uridine/cytidine kinase; Provisional	99.3
PRK05541	176	adenylylsulfate kinase; Provisional	99.3
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.29
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.28
PRK00300	205	gmk guanylate kinase; Provisional	99.27
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.27
PRK11545	163	gntK gluconate kinase 1; Provisional	99.26
PRK06547	172	hypothetical protein; Provisional	99.24
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.23
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.23
PRK12338	319	hypothetical protein; Provisional	99.22
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.21
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.16
PRK00889	175	adenylylsulfate kinase; Provisional	99.16
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.16
PRK00023	225	cmk cytidylate kinase; Provisional	99.08
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.07
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.04
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.04
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.01
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.01
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.0
COG0645	170	Predicted kinase [General function prediction only	99.0
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.99
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.98
PRK07667	193	uridine kinase; Provisional	98.97
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.96
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.96
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	98.96
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.94
PRK06696	223	uridine kinase; Validated	98.93
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.93
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.92
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.92
PRK03846	198	adenylylsulfate kinase; Provisional	98.91
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.89
PTZ00301	210	uridine kinase; Provisional	98.88
PHA03132	580	thymidine kinase; Provisional	98.87
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.87
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.85
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.84
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.83
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.82
PLN02348	395	phosphoribulokinase	98.81
PLN02772	398	guanylate kinase	98.79
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.75
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.75
PRK07429	327	phosphoribulokinase; Provisional	98.74
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.72
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.71
COG4639	168	Predicted kinase [General function prediction only	98.69
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.68
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.68
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.64
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.64
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.62
PRK05439	311	pantothenate kinase; Provisional	98.61
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.57
COG3709	192	Uncharacterized component of phosphonate metabolis	98.55
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.54
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.53
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.53
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.5
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.5
PHA00729	226	NTP-binding motif containing protein	98.44
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.43
PLN02318	656	phosphoribulokinase/uridine kinase	98.43
PLN02165	334	adenylate isopentenyltransferase	98.41
PRK15453	290	phosphoribulokinase; Provisional	98.33
PRK09169	2316	hypothetical protein; Validated	98.17
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.1
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.09
COG1660	286	Predicted P-loop-containing kinase [General functi	98.08
PF00004	132	AAA: ATPase family associated with various cellula	98.08
PHA03136	378	thymidine kinase; Provisional	98.05
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.05
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.97
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.93
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.91
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.89
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.89
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.88
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	97.88
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.87
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.86
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.85
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.81
CHL00195	489	ycf46 Ycf46; Provisional	97.79
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.77
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.74
PLN02840	421	tRNA dimethylallyltransferase	97.74
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	97.73
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.71
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.71
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.7
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.7
CHL00181	287	cbbX CbbX; Provisional	97.69
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.69
smart00382	148	AAA ATPases associated with a variety of cellular	97.67
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	97.66
PRK06761	282	hypothetical protein; Provisional	97.64
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.63
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.62
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.62
PLN02748	468	tRNA dimethylallyltransferase	97.61
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.6
PF13173	128	AAA_14: AAA domain	97.58
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.58
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.57
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	97.56
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.55
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.52
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.52
PRK14974	336	cell division protein FtsY; Provisional	97.5
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.49
PLN02796	347	D-glycerate 3-kinase	97.45
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.43
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.4
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.37
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.37
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.37
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.36
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.36
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.33
PLN03046	460	D-glycerate 3-kinase; Provisional	97.33
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.32
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.32
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.31
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	97.31
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.3
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	97.3
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.29
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.29
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.28
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.28
PF13245	76	AAA_19: Part of AAA domain	97.27
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.26
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.26
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.26
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.24
PRK06620	214	hypothetical protein; Validated	97.24
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.24
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.23
TIGR00959	428	ffh signal recognition particle protein. This mode	97.23
PRK10867	433	signal recognition particle protein; Provisional	97.22
CHL00176	638	ftsH cell division protein; Validated	97.22
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.19
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.18
PHA03134	340	thymidine kinase; Provisional	97.18
PRK12377	248	putative replication protein; Provisional	97.15
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.14
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.14
COG3911	183	Predicted ATPase [General function prediction only	97.14
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.13
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.13
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.13
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.11
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.11
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.11
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.11
PF05729	166	NACHT: NACHT domain	97.1
PF07726	131	AAA_3: ATPase family associated with various cellu	97.1
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.09
PRK09087	226	hypothetical protein; Validated	97.09
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.08
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.08
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.07
PHA02244	383	ATPase-like protein	97.06
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.05
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.05
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.05
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.04
PRK04195	482	replication factor C large subunit; Provisional	97.04
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.03
PRK04328	249	hypothetical protein; Provisional	97.02
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.02
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.02
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.01
PRK08116	268	hypothetical protein; Validated	96.97
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.96
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	96.96
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.95
PHA03135	343	thymidine kinase; Provisional	96.95
PRK13342	413	recombination factor protein RarA; Reviewed	96.94
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	96.94
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.94
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.93
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.92
PRK06067	234	flagellar accessory protein FlaH; Validated	96.91
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.9
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.9
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.9
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.89
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.87
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.87
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.86
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.86
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.86
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.85
PRK13695	174	putative NTPase; Provisional	96.85
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.84
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.84
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.84
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.83
PRK10416	318	signal recognition particle-docking protein FtsY;	96.83
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.82
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.81
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.81
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	96.8
KOG3062	281	consensus RNA polymerase II elongator associated p	96.8
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.8
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	96.8
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.8
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.79
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.78
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.78
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.78
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.78
CHL00206	2281	ycf2 Ycf2; Provisional	96.78
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.75
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.74
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.73
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.73
PRK08084	235	DNA replication initiation factor; Provisional	96.73
PRK06893	229	DNA replication initiation factor; Validated	96.72
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.72
COG4240	300	Predicted kinase [General function prediction only	96.72
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.72
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.72
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.71
PRK06526	254	transposase; Provisional	96.7
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.7
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	96.69
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.68
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.67
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.67
COG2326	270	Uncharacterized conserved protein [Function unknow	96.66
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.66
PRK15455	644	PrkA family serine protein kinase; Provisional	96.66
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.64
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.63
cd03116	159	MobB Molybdenum is an essential trace element in t	96.63
PHA03138	340	thymidine kinase; Provisional	96.63
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.61
PRK09183	259	transposase/IS protein; Provisional	96.61
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.61
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.61
PLN03025	319	replication factor C subunit; Provisional	96.61
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.61
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.61
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.61
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.61
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.61
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.6
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	96.6
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.59
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.59
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.58
PRK10646	153	ADP-binding protein; Provisional	96.58
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.57
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.57
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	96.57
COG1855	604	ATPase (PilT family) [General function prediction	96.56
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.55
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.55
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.55
PRK12402	337	replication factor C small subunit 2; Reviewed	96.54
PRK13768	253	GTPase; Provisional	96.54
KOG1533	290	consensus Predicted GTPase [General function predi	96.53
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.52
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.52
PRK04296	190	thymidine kinase; Provisional	96.51
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.51
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.51
COG0714	329	MoxR-like ATPases [General function prediction onl	96.51
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.5
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.49
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.49
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.49
PRK08181	269	transposase; Validated	96.48
PHA02544	316	44 clamp loader, small subunit; Provisional	96.48
PHA02624	647	large T antigen; Provisional	96.47
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.46
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.46
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.46
PF13479	213	AAA_24: AAA domain	96.45
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.44
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.44
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.43
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.43
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	96.43
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.43
PRK13341	725	recombination factor protein RarA/unknown domain f	96.43
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.43
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.42
PRK06921	266	hypothetical protein; Provisional	96.41
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.41
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.41
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.41
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.41
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.4
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.4
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.4
PRK08727	233	hypothetical protein; Validated	96.4
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.4
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.4
PHA03133	368	thymidine kinase; Provisional	96.4
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.4
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.39
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.39
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.39
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.39
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.39
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.38
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.37
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.37
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.37
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.36
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.36
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.36
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.36
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.35
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.35
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.35
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.35
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.34
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.34
PRK07952	244	DNA replication protein DnaC; Validated	96.34
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.34
COG0802	149	Predicted ATPase or kinase [General function predi	96.34
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.34
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.34
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.34
PRK07940	394	DNA polymerase III subunit delta'; Validated	96.33
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.32
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.32
cd03246	173	ABCC_Protease_Secretion This family represents the	96.32
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.32
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.31
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.31
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.31
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.31
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.3
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.3
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.3
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.3
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	96.3
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.29
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.29
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.29
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.29
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.29
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.28
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.28
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.28
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.28
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.28
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.28
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.28
cd03114	148	ArgK-like The function of this protein family is u	96.27
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.27
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.27
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.27
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.26
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.26
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.26
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.26
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.26
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.26
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.26
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.25
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.24
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.24
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.24
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.24
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	96.23
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.23
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.23
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.22
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.22
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.22
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.22
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.21
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.21
PRK10908	222	cell division protein FtsE; Provisional	96.21
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.2
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.2
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.2
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	96.2
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.19
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.19
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.19
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.19
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.18
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.18
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	96.18
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	96.18
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.18
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.18
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.17
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.17
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	96.17
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.17
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.17
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.17

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=1.4e-47  Score=331.60  Aligned_cols=238  Identities=79%  Similarity=1.286  Sum_probs=223.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      ++..++++|+|+|||||||||+|+.|++.||++||++++++|+++..++++|..++.++.+|.++|++++..++.+++..
T Consensus        24 ~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~  103 (261)
T PLN02459         24 LAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA  103 (261)
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence            55567788999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          129 GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                      ......+||||||||++..|++.|+....++.||+|+++.+++++|+.+|++|+.||+.||+..++.++++|.+..++|+
T Consensus       104 ~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p  183 (261)
T PLN02459        104 GEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPP  183 (261)
T ss_pred             ccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCC
Confidence            52111579999999999999999998888999999999999999999999999999999999888888999999999999


Q ss_pred             CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhhhhhhhcC
Q 023080          209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA  287 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~~~~~~~~  287 (287)
                      ..|+..|+.+|++|.||+++.+++|++.|++...|+.+||.+.+.++.||+++++++|+++|.++|..++ ++|.++++
T Consensus       184 ~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~-~~~~~~~~  261 (261)
T PLN02459        184 LLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD-EDKRSAAA  261 (261)
T ss_pred             CCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh-hhhhcccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999874 88888775

>PLN02674 adenylate kinase

Probab=100.00  E-value=5.6e-43  Score=301.80  Aligned_cols=204  Identities=31%  Similarity=0.575  Sum_probs=189.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      +++++|+|+|||||||||+|++|+++||++||++++++|+++..++++|..+++++.+|..+|++++..++.+++...++
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM  206 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~  206 (287)
                      .  .||||||||++..|++.|+..     ..++.+|+|++|.+++++|+.+|++|+.||+.||..               
T Consensus       109 ~--~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~---------------  171 (244)
T PLN02674        109 Q--KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTK---------------  171 (244)
T ss_pred             C--CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccc---------------
Confidence            4  799999999999999988765     359999999999999999999999999999999995               


Q ss_pred             CCCCCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          207 APLLPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       207 ~~~~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                        +.||+      .|+++|++|.||+++.+++|++.|++...|+.+||.+.+.++.||+++++++|++.|..+|
T Consensus       172 --~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        172 --FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             --cCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence              44443      4678999999999999999999999999999999999999999999999999999999876

>PRK14526 adenylate kinase; Provisional

Probab=100.00  E-value=1.4e-39  Score=276.88  Aligned_cols=203  Identities=37%  Similarity=0.662  Sum_probs=187.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |.|+|+|+|||||||+++.|++.+++.++++++++++.+...++.+..+.+++.+|..+|++++..++.+++.....  .
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~--~   78 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN--N   78 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc--c
Confidence            46889999999999999999999999999999999999998999999999999999999999999999999987654  3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc-
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA-  213 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~-  213 (287)
                      .+|||||||++..|++.|+.......+|+|++|++++++|+.+|++|+.||..||..                 ++||+ 
T Consensus        79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~-----------------~~pp~~  141 (211)
T PRK14526         79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIY-----------------TLPTKE  141 (211)
T ss_pred             CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccc-----------------cCCCCc
Confidence            799999999999999999886554568889999999999999999999999999985                 44443 


Q ss_pred             -----ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          214 -----HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       214 -----~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                           .|+.+|++|.||+++.+++|++.|++...|+.+||...+.++.||+++++++|+++|.+.|..
T Consensus       142 ~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        142 KGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             cCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence                 467899999999999999999999999999999999999999999999999999999999874

>PTZ00088 adenylate kinase 1; Provisional

Probab=100.00  E-value=2.9e-39  Score=277.76  Aligned_cols=214  Identities=38%  Similarity=0.742  Sum_probs=189.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh--cc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA--GQ  130 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~--~~  130 (287)
                      .|++|+|+|||||||||+|+.|+++||++|+++|+++++.+..++.++..+++++.+|.++|++++..++.+++..  ..
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            5678999999999999999999999999999999999999988889999999999999999999999999999987  33


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL  210 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~  210 (287)
                      .  ..+|||||||++..|+..++....++++|+|+++.+++++|+.+|++|+.||+.||...+..+      .+.+|+..
T Consensus        85 ~--~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~------~~~~pp~~  156 (229)
T PTZ00088         85 C--FKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSD------PYDMPPIL  156 (229)
T ss_pred             c--CceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccc------cccCCCCC
Confidence            3  479999999999999999988888999999999999999999999999999999998633211      11234444


Q ss_pred             CCccc---c--cccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCc-EEEE---eCCCCcccHHHHHHHHh
Q 023080          211 PPAHC---M--SKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGK-LLEF---DLPGGIPESWPKLLEAL  274 (287)
Q Consensus       211 ~p~~~---~--~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~-~~~i---d~~~~~eev~~~I~~~l  274 (287)
                      |+..|   +  .+|.+|.||+++.+++|++.|+++..++.+||.+.+. ++.+   |+.+++++|++.|.+.|
T Consensus       157 ~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~  229 (229)
T PTZ00088        157 PPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL  229 (229)
T ss_pred             CCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence            44333   3  4899999999999999999999999999999999998 8888   79999999999998754

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=7.7e-39  Score=273.06  Aligned_cols=205  Identities=31%  Similarity=0.514  Sum_probs=181.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|||||||||+|++|+++|+++|+++++++|+.+..++++++.+++++.+|..+|++++..++.+++....   .
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~   77 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K   77 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence            4699999999999999999999999999999999999998899999999999999999999999999999998865   3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      +||||||||++..|++.|+..     ..|+.+|+|++|.+++++|+.+|++|+.||..|+...            +.|+-
T Consensus        78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~------------~~~p~  145 (223)
T PRK14529         78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIF------------IDAIK  145 (223)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccc------------cCCCc
Confidence            799999999999999998764     3599999999999999999999999999998776641            11111


Q ss_pred             CC---CcccccccccCCCCc-HHHHHHHHHHHHhh---chHHHHHHHh-----cCcEEEEeCCCCcccHHHHHHHHh
Q 023080          210 LP---PAHCMSKLITRADDT-EEVVKERLRVYNEK---SQPVEEFYRN-----RGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       210 ~~---p~~~~~~L~~r~~d~-~~~i~~rl~~y~~~---~~~~~~~y~~-----~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                      .+   -..|+.+|++|.||+ ++.+++|++.|+++   ..++.+||.+     .+.++.||+++++++|+++|.++|
T Consensus       146 ~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        146 PDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             ccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            11   134788999999996 78999999999997   4588999996     678999999999999999999876

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=1.6e-38  Score=271.25  Aligned_cols=206  Identities=45%  Similarity=0.804  Sum_probs=185.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      +|+|+|+|||||||+|+.|+++||++|++++++++..+...++.+..+.+++.+|..+|++++..++..++...... +.
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~-~~   79 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDN-EN   79 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc-CC
Confidence            38899999999999999999999999999999999999888899999999999999999999999999999875433 47


Q ss_pred             cEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCC-
Q 023080          136 GFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPP-  212 (287)
Q Consensus       136 g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p-  212 (287)
                      +|||||||++..|++.|....  .++.+|+|++|.+++++|+.+|++|+.||..||..             ++||-.+. 
T Consensus        80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~-------------~~~p~~~~~  146 (210)
T TIGR01351        80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLK-------------FNPPKVPGC  146 (210)
T ss_pred             cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccc-------------cCCCccCCc
Confidence            999999999999999998866  48999999999999999999999999999999995             22221111 


Q ss_pred             -cccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          213 -AHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       213 -~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                       ..|+++|+.|.||+.+.+++|++.|++...++.+||.+.+.++.||+++++++|++.|.+.|.
T Consensus       147 ~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  210 (210)
T TIGR01351       147 DDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK  210 (210)
T ss_pred             CcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence             236789999999999999999999999999999999999999999999999999999998873

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK00279 adk adenylate kinase; Reviewed

Probab=100.00  E-value=3.6e-37  Score=263.93  Aligned_cols=202  Identities=40%  Similarity=0.797  Sum_probs=185.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.||++||++++++++++++.+..+++.+..+.+++.+|..+|++++..++.+++....+.  
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~--   78 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCK--   78 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCcc--
Confidence            469999999999999999999999999999999999999988999999999999999999999999999999876654  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+|||||||++..|++.++..     ..++.+|+|+++.+++++|+.+|..||.||..||+.                 +
T Consensus        79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~-----------------~  141 (215)
T PRK00279         79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVK-----------------F  141 (215)
T ss_pred             CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCccccc-----------------C
Confidence            599999999999999998654     247899999999999999999999999999999995                 3


Q ss_pred             CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                      +||+      .|+.+|..|.||+.+.+++|++.|+++..++.+||...+.++.||+++++++++++|...|.
T Consensus       142 ~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (215)
T PRK00279        142 NPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG  213 (215)
T ss_pred             CCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            4443      35678999999999999999999999999999999999999999999999999999999875

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=5.1e-36  Score=241.74  Aligned_cols=186  Identities=33%  Similarity=0.619  Sum_probs=171.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc-CCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS-SGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~-~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      ...+++|+++|+|||||.|+|..++++||+.|+|++|++|.+... +++.|..+++++++|..+|.+++..++.+++...
T Consensus         5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~   84 (195)
T KOG3079|consen    5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS   84 (195)
T ss_pred             ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence            456778999999999999999999999999999999999999988 8999999999999999999999999999999886


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                      ...  ++|+|||||++.+|+..|++..  .+++++|++|+.+++++|+..|....                         
T Consensus        85 ~~~--~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~-------------------------  137 (195)
T KOG3079|consen   85 GDS--NGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN-------------------------  137 (195)
T ss_pred             CCC--CeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC-------------------------
Confidence            553  4699999999999999999865  48999999999999999999996431                         


Q ss_pred             CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                   .|.||+.+.+++|++.|++...|+++||+..++++.||+++++++|+.++...+..
T Consensus       138 -------------~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  138 -------------SRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             -------------CCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence                         37799999999999999999999999999999999999999999999999988763

>PRK14530 adenylate kinase; Provisional

Probab=100.00  E-value=2.5e-35  Score=252.53  Aligned_cols=199  Identities=39%  Similarity=0.741  Sum_probs=177.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHH-----HcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREEL-----ASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~-----~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      ++|+|+|+|||||||+|+.|+++||++|++++++++...     ......+. ..+++..|..+|++....++...+...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~~   82 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSDA   82 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence            479999999999999999999999999999999999876     22334443 677889999999999999988877542


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                           .+||+||||++..|++.|+....++++|+|++|.+++++|+.+|+.++.||..||..                 +
T Consensus        83 -----~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~-----------------~  140 (215)
T PRK14530         83 -----DGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVE-----------------F  140 (215)
T ss_pred             -----CCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccC-----------------C
Confidence                 589999999999999999887789999999999999999999999999999999985                 3


Q ss_pred             CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                      .||+      .|+.+|+.|.+|+++.+++|+..|+++..++.+||.+.+.++.||++++++++++.|...|..
T Consensus       141 ~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        141 NQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            3442      466799999999999999999999999999999999988899999999999999999998864

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=8.4e-35  Score=245.86  Aligned_cols=213  Identities=46%  Similarity=0.751  Sum_probs=193.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ++.+++++|+||+||+|+|.+|++.|++.|++++|++|+.+..+++.+..+++++..|+++|++++..++...+....+.
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999777788887554


Q ss_pred             CCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                        ++|++||||++..|++.+.. ...+|.||.|.+|.+.+.+|+.+|++||.+|+.||..                 |+|
T Consensus        94 --~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~-----------------~~p  154 (235)
T KOG3078|consen   94 --KGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLE-----------------FNP  154 (235)
T ss_pred             --cccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceeccc-----------------ccC
Confidence              89999999999998877555 5579999999999999999999999999999999986                 455


Q ss_pred             Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhhhhhhh
Q 023080          212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSA  285 (287)
Q Consensus       212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~~~~~~  285 (287)
                      |+      ..++.|++|.+|+.+.++.|++.|++...|+.+||...+++..+++.. .++||..|...|.....+..+..
T Consensus       155 Pk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~~~~  233 (235)
T KOG3078|consen  155 PKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPEREQKE  233 (235)
T ss_pred             CccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhhhhc
Confidence            53      234669999999999999999999999999999999999999999998 99999999999998876655543

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=5.4e-34  Score=255.05  Aligned_cols=191  Identities=36%  Similarity=0.572  Sum_probs=170.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|||||||||+|++|++.||++||++++++|..+..+++.+..+.+++.+|.++|++++..++.+++...++.  
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~--   78 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAA--   78 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccccc--
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999887664  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .||||||||++..|++.|+...     .||++|+|++|++++++|+..|+.+..+                         
T Consensus        79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~-------------------------  133 (333)
T PRK13808         79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA-------------------------  133 (333)
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------------
Confidence            7999999999999999887642     5999999999999999999998643100                         


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchh
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEY  279 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~  279 (287)
                           ++  ...|.||+.+.+++|+..|++...|+.+||.+.+.++.||+++++++|+++|...|.....
T Consensus       134 -----rg--~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~  196 (333)
T PRK13808        134 -----RG--EEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA  196 (333)
T ss_pred             -----cC--CccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence                 00  1246788999999999999999999999999988899999999999999999999986554

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=2.2e-33  Score=235.06  Aligned_cols=180  Identities=36%  Similarity=0.645  Sum_probs=165.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.|+++||+++++++++++..+..+++.+..+..++..|..+|++++..++.+++....+.  
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~--   79 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCK--   79 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCcc--
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999887554  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+|||||||++..|++.++..     ..+|.+|+|++|++++++|+.+|....                           
T Consensus        80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~---------------------------  132 (186)
T PRK14528         80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIE---------------------------  132 (186)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcccc---------------------------
Confidence            799999999999999988764     359999999999999999999996432                           


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                 .|.||+.+.+++|++.|++...|+.+||...+.++.||+++++++|+..|.+.|
T Consensus       133 -----------gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~  186 (186)
T PRK14528        133 -----------GRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL  186 (186)
T ss_pred             -----------CCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence                       567899999999999999999999999999999999999999999999998754

>PLN02842 nucleotide kinase

Probab=100.00  E-value=2.3e-33  Score=262.12  Aligned_cols=201  Identities=32%  Similarity=0.611  Sum_probs=182.6

Q ss_pred             EEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCccE
Q 023080           58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGF  137 (287)
Q Consensus        58 vi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~g~  137 (287)
                      +|+|+|||||||+|++|+++|++.|++++++++.++..++++|..+++++.+|..+|++.+..++.+++.+..+. .+||
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~-~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAK-EKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCcccc-CCcE
Confidence            379999999999999999999999999999999999999999999999999999999999999999999876543 4789


Q ss_pred             EEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCC--cc
Q 023080          138 ILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPP--AH  214 (287)
Q Consensus       138 Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p--~~  214 (287)
                      ||||||++..|++.|+... .||++|+|+++++++++|+.+|+.|+.||..||..                 +.||  +.
T Consensus        80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~-----------------~~pP~~~~  142 (505)
T PLN02842         80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIK-----------------NFPPESEE  142 (505)
T ss_pred             EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccc-----------------cCCCCccc
Confidence            9999999999999888754 59999999999999999999999999999999995                 3333  24


Q ss_pred             cccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          215 CMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       215 ~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                      +..+|.+|.||+++.+++|++.|++...++.++|..  .++.||+++++++|+++|.+.|....
T Consensus       143 ~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L  204 (505)
T PLN02842        143 IKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQ  204 (505)
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999964  58899999999999999999998543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=100.00  E-value=8.8e-33  Score=232.55  Aligned_cols=190  Identities=46%  Similarity=0.800  Sum_probs=175.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      +|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+.+++.+|..++++++..++...+.....  ..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~--~~   78 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDC--KK   78 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--cC
Confidence            4899999999999999999999999999999999999888888999999999999999999999999999887542  47


Q ss_pred             cEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          136 GFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       136 g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                      +||+||||++..|+..+....    .++++|+|++|++++++|+.+|..++.||..||.                   .+
T Consensus        79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~-------------------~~  139 (194)
T cd01428          79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL-------------------GK  139 (194)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc-------------------CC
Confidence            999999999999999988765    6899999999999999999999999999999998                   24


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccH
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPES  266 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev  266 (287)
                      ++.|..+|..|.+|+.+.+++|++.|++...++.+||.+.+.++.||++++++++
T Consensus       140 ~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v  194 (194)
T cd01428         140 DDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV  194 (194)
T ss_pred             CcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence            5678888999999999999999999999999999999999999999999999875

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=1.1e-32  Score=230.45  Aligned_cols=175  Identities=43%  Similarity=0.736  Sum_probs=160.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.|+++||++|+++++++|+.+..+++++..+..++.+|..+|++++..++.+.+....   +
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~---~   79 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN---S   79 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc---C
Confidence            4799999999999999999999999999999999999999999999999999999999999999999998887642   3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+|||||||++..|++.++...     .++.+|+|++|++++.+|+..|.                              
T Consensus        80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~------------------------------  129 (183)
T PRK14531         80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG------------------------------  129 (183)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC------------------------------
Confidence            6899999999999999887642     47899999999999999999883                              


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                  +.||+.+.+++|++.|++...|+.+||...+.++.||+++++++++.+|.+.|
T Consensus       130 ------------r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        130 ------------RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence                        45888999999999999999999999999889999999999999999999876

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=1.3e-32  Score=230.73  Aligned_cols=181  Identities=39%  Similarity=0.644  Sum_probs=163.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |.|+|+|+|||||||+|+.||+++|++|+++|+++++.+..+++.+..+++++..|..+|++++..++.+.+....+  +
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~   78 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA--A   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--c
Confidence            46899999999999999999999999999999999999988889999999999999999999999999998876654  4


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .|||+||||++..|++.++..     ..||.+|+|++|++++++|+.+|..+.                           
T Consensus        79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~---------------------------  131 (188)
T PRK14532         79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ---------------------------  131 (188)
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC---------------------------
Confidence            799999999999999987643     358999999999999999999885321                           


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                 .|.+++.+.+.+|++.|+....++.++|.+.+.++.||+++++++++++|.+.|.
T Consensus       132 -----------~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        132 -----------GRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             -----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence                       4668888999999999999999999999988889999999999999999998874

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=1.2e-31  Score=231.77  Aligned_cols=186  Identities=28%  Similarity=0.564  Sum_probs=167.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      .+..|++|+|+|+|||||||+|+.|+++||++|+++++++|+.+...++.+..+.+.+..|..+|++++..++..++...
T Consensus        39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~  118 (234)
T PLN02200         39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS  118 (234)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999999999999999999888889999999999999999999999998888754


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                      .   ..+|||||||++..|+..+....  .||.+|+|+++++++++|+.+|+.                           
T Consensus       119 ~---~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~---------------------------  168 (234)
T PLN02200        119 D---NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ---------------------------  168 (234)
T ss_pred             C---CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC---------------------------
Confidence            3   35899999999999998887653  599999999999999999998852                           


Q ss_pred             CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                                   .|.+|+.+.+++|++.|++...++.++|++.+.++.||+++++++|++.|.+.|..+.
T Consensus       169 -------------~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~  226 (234)
T PLN02200        169 -------------GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACE  226 (234)
T ss_pred             -------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence                         2457789999999999999999999999988889999999999999999999988764

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=1.4e-31  Score=225.22  Aligned_cols=182  Identities=38%  Similarity=0.649  Sum_probs=164.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ++.+|+|+|+|||||||+|+.|+++||+.+++++++++.....+++.+..+..++.+|..+|++++..++.+.+...++ 
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~-   83 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP-   83 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-
Confidence            5678999999999999999999999999999999999999888888999999999999999999999999999887644 


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                        .+||+||||++..|++.++...     .++.+|+|++|.+++++|+.+|....                         
T Consensus        84 --~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~-------------------------  136 (191)
T PRK14527         84 --VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQE-------------------------  136 (191)
T ss_pred             --CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC-------------------------
Confidence              4799999999999998776532     47789999999999999999986332                         


Q ss_pred             CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                   .|.+|+.+.+++|++.|++...++.+||.+.+.++.||+++++++|+++|...|.
T Consensus       137 -------------~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  191 (191)
T PRK14527        137 -------------GRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKALG  191 (191)
T ss_pred             -------------CCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhhC
Confidence                         5678899999999999999999999999999999999999999999999998763

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=4.1e-31  Score=220.63  Aligned_cols=178  Identities=31%  Similarity=0.604  Sum_probs=159.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      +|+|+|+|||||||+|+.|++++|++|+++++++++.+..+++.+..+++++.+|..+|++++..++.+++....   ++
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~   77 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG---SK   77 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC---CC
Confidence            478999999999999999999999999999999999998888889999999999999999999999998887653   36


Q ss_pred             cEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          136 GFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       136 g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                      +|||||||++..|+..+...    ..|+.+|+|++|++++++|+..|...                              
T Consensus        78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~------------------------------  127 (183)
T TIGR01359        78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS------------------------------  127 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc------------------------------
Confidence            99999999999999887654    25899999999999999999998531                              


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                              ..+.+++.+.+++|++.|.+...++.++|...+.++.||+++++++++++|.+.|
T Consensus       128 --------~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       128 --------SGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             --------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence                    1345778899999999999999999999998888999999999999999999876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK02496 adk adenylate kinase; Provisional

Probab=100.00  E-value=6.4e-31  Score=219.84  Aligned_cols=177  Identities=41%  Similarity=0.725  Sum_probs=161.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.|+++||++++++++++++.+..+++.+..+..++.+|..+|++++..++..++.+.++.  
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~--   79 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAA--   79 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCcc--
Confidence            679999999999999999999999999999999999999888899999999999999999999999999999876554  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+||+||||++..|+..++..     ..|+.+|+|+++.+++.+|+..|.                              
T Consensus        80 ~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~------------------------------  129 (184)
T PRK02496         80 NGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG------------------------------  129 (184)
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC------------------------------
Confidence            699999999999998887653     258999999999999999999883                              


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                  +.+|.++.+++|++.|++...++.++|.+.+.++.||+++++++|+++|.+.|.
T Consensus       130 ------------~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        130 ------------RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA  183 (184)
T ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence                        346788999999999999999999999988889999999999999999998874

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.97  E-value=1.4e-29  Score=209.65  Aligned_cols=172  Identities=44%  Similarity=0.798  Sum_probs=160.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.|+++++++|+|++++++......++++..++.++.+|.++|++++..++..++...++. .
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~-~   79 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK-A   79 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc-C
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999998776 3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                       +||+||||++..|++.+++.     ...+.++.++++.+.++.|+..|+                              
T Consensus        80 -~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~------------------------------  128 (178)
T COG0563          80 -GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR------------------------------  128 (178)
T ss_pred             -eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc------------------------------
Confidence             89999999999999999875     358999999999999999999985                              


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                 .|.||+.+.+++|+..|++...|+.+||.     +.||+.++++++++.+.+.+
T Consensus       129 -----------~r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         129 -----------VREDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             -----------ccccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence                       25699999999999999999999999997     78999999999999998876

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.97  E-value=5.4e-29  Score=201.70  Aligned_cols=145  Identities=48%  Similarity=0.817  Sum_probs=130.0

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCccEE
Q 023080           59 FLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFI  138 (287)
Q Consensus        59 i~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~g~I  138 (287)
                      |+|||||||||+|+.||++||++||++++++++.+...+..+..+++++.+|..+|++++..++..++.....  .+|||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~--~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPC--NRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGT--TTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcc--cceee
Confidence            6899999999999999999999999999999999999999999999999999999999999999999998733  58999


Q ss_pred             EeCCCCCHHHHHHHHH-----hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc
Q 023080          139 LDGFPRTVKQAEILEE-----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA  213 (287)
Q Consensus       139 ldg~p~~~~~~~~l~~-----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~  213 (287)
                      |||||++..|++.|+.     ...|+.+|+|+++.+++.+|+.+                                    
T Consensus        79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------  122 (151)
T PF00406_consen   79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------  122 (151)
T ss_dssp             EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------
T ss_pred             eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------
Confidence            9999999999999988     34589999999999999999964                                    


Q ss_pred             ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcC
Q 023080          214 HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRG  252 (287)
Q Consensus       214 ~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~  252 (287)
                                 |+.+.+++|++.|+++..++.+||.+.+
T Consensus       123 -----------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen  123 -----------DNEEVIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             -----------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                       4578999999999999999999999875

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.96  E-value=7.3e-28  Score=201.49  Aligned_cols=183  Identities=32%  Similarity=0.577  Sum_probs=159.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      ..+|+|+|+|||||||+|+.|++++|+.+++++++++..+...+..+..+..++.+|..++.+.+...+...+...... 
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-   81 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT-   81 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc-
Confidence            3478999999999999999999999999999999999987777778888899999999999988888888777654333 


Q ss_pred             CccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCC
Q 023080          134 ESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPP  212 (287)
Q Consensus       134 ~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p  212 (287)
                      +.+||+||||++..|+..+... ..|+++|+|++|.+++.+|+.+|...                               
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~-------------------------------  130 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAET-------------------------------  130 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccccc-------------------------------
Confidence            5799999999999999888654 46999999999999999999988521                               


Q ss_pred             cccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          213 AHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       213 ~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                             ..|.+++.+.+.+|+..|+....++.++|...+.++.||+++++++++++|...|.
T Consensus       131 -------~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       131 -------SGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             -------CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence                   13567788999999999999999999999887788999999999999999999885

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01184 hypothetical protein; Provisional

Probab=99.77  E-value=1.1e-16  Score=133.54  Aligned_cols=168  Identities=17%  Similarity=0.271  Sum_probs=113.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc-CCc-----hHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS-SGS-----LSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~-~~~-----~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      ++|+|+|+|||||||+++ +++++|+++++++|++++.+.. +.+     ++.........   +....+...+...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh
Confidence            578999999999999987 7889999999999999998743 211     34434333321   2223333444444444


Q ss_pred             cccCCCccEEEeCCCCCHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080          129 GQAGGESGFILDGFPRTVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                      .   ++..+|+||+ ++..+.+.+..... +..+|++++|.+++.+|+..|..                           
T Consensus        78 ~---~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~---------------------------  126 (184)
T PRK01184         78 K---GDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGR---------------------------  126 (184)
T ss_pred             c---CCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCC---------------------------
Confidence            2   1468999999 68888877766543 56899999999999999998741                           


Q ss_pred             CCCCCcccccccccCCCC--cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          208 PLLPPAHCMSKLITRADD--TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       208 ~~~~p~~~~~~L~~r~~d--~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                     .+|  +.+.+.+|.+....  .+..+.+...+  +.|+++++.+++..+|.+.+..
T Consensus       127 ---------------~~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~  178 (184)
T PRK01184        127 ---------------SDDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLER  178 (184)
T ss_pred             ---------------CCChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHH
Confidence                           122  35556666554322  12334444333  3466788999999999988764

>PRK13974 thymidylate kinase; Provisional

Probab=99.76  E-value=1.3e-17  Score=142.58  Aligned_cols=177  Identities=17%  Similarity=0.202  Sum_probs=119.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee--hhHHHHHHHHcCCchHHHHHHHHhc--CCcccHHHHHHHH--HHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA--TGDLVREELASSGSLSQQLSEIVNQ--GKLVSDEIIFNLL--SKRL  126 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~--~d~llr~~~~~~~~~~~~i~~~l~~--g~~~~~~~~~~~l--~~~l  126 (287)
                      ++.+|+|.|++||||||+++.|++.+.....-  ..+.+....+.++++|+.+++++..  |...++.....++  ..+.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~   81 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA   81 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence            36789999999999999999999998532210  0011111223467889999999863  3333443333333  2221


Q ss_pred             H------hcccCCCccEEE-----------eCCCCCHH--HHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCcccc
Q 023080          127 E------AGQAGGESGFIL-----------DGFPRTVK--QAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQ  183 (287)
Q Consensus       127 ~------~~~~~~~~g~Il-----------dg~p~~~~--~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~  183 (287)
                      .      .+... ...+||           +|+|+...  +...++..    ..||++|+|++|++++.+|+.+|.    
T Consensus        82 ~~~~~~i~~~l~-~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~----  156 (212)
T PRK13974         82 QHVSKIIRPALE-NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK----  156 (212)
T ss_pred             HHHHHHHHHHHH-CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence            1      11111 123555           56776543  34555442    259999999999999999998763    


Q ss_pred             CCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCc
Q 023080          184 CGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGI  263 (287)
Q Consensus       184 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~  263 (287)
                                                              +|   .+..+...|.+...+...+|.+.+.++.||+++++
T Consensus       157 ----------------------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~  193 (212)
T PRK13974        157 ----------------------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSI  193 (212)
T ss_pred             ----------------------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence                                                    22   23456667888888888899888899999999999


Q ss_pred             ccHHHHHHHHhccc
Q 023080          264 PESWPKLLEALNLD  277 (287)
Q Consensus       264 eev~~~I~~~l~~~  277 (287)
                      ++++++|.+.|...
T Consensus       194 eeV~~~I~~~l~~~  207 (212)
T PRK13974        194 ETISNEIKETLLNN  207 (212)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999753

>PRK03839 putative kinase; Provisional

Probab=99.75  E-value=2.7e-17  Score=136.94  Aligned_cols=153  Identities=22%  Similarity=0.313  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|+|||||||+++.|+++++++++++|+++++.     .++.....   .+     +.....+...+.....  +
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~---~~-----~~~~~~l~~~~~~~~~--~   65 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD---EM-----EIDFDKLAYFIEEEFK--E   65 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh---hh-----hcCHHHHHHHHHHhcc--C
Confidence            46999999999999999999999999999999998752     11111000   01     1123333333333211  3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcc
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH  214 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~  214 (287)
                      .+||+||+...         ...++++|+|+++++++.+|+..|...+                                
T Consensus        66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~~~--------------------------------  104 (180)
T PRK03839         66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGYSK--------------------------------  104 (180)
T ss_pred             CCEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCCCH--------------------------------
Confidence            57999997542         2358899999999999999998774211                                


Q ss_pred             cccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccc
Q 023080          215 CMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLD  277 (287)
Q Consensus       215 ~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~  277 (287)
                               .+..+.+..++   ..  ..+.+.|.....++.||++ .++++++.+|.+.|...
T Consensus       105 ---------~~~~~~~~~~~---~~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~  154 (180)
T PRK03839        105 ---------KKILENVEAEL---VD--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG  154 (180)
T ss_pred             ---------HHHHHHHHHHH---HH--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence                     00011111111   11  1233556666778899996 69999999999998754

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.74  E-value=9e-17  Score=130.62  Aligned_cols=111  Identities=24%  Similarity=0.329  Sum_probs=83.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      .+.|+|+|+|||||||+++.||+.++++++|+|.++.+      ..++.+.++++. |+.........++.+.+...   
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~------~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~---   72 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK------RTGMSIAEIFEEEGEEGFRRLETEVLKELLEED---   72 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH------HHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence            35699999999999999999999999999999999988      455777788775 55444444455555544442   


Q ss_pred             CCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          133 GESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       133 ~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                        ..+|-.|  ...+.+....+...+   .+|||++|.+++++|+...
T Consensus        73 --~~ViaTGGG~v~~~enr~~l~~~g---~vv~L~~~~e~l~~Rl~~~  115 (172)
T COG0703          73 --NAVIATGGGAVLSEENRNLLKKRG---IVVYLDAPFETLYERLQRD  115 (172)
T ss_pred             --CeEEECCCccccCHHHHHHHHhCC---eEEEEeCCHHHHHHHhccc
Confidence              2444443  556666666676654   7999999999999999844

>PRK13973 thymidylate kinase; Provisional

Probab=99.74  E-value=3.4e-16  Score=133.80  Aligned_cols=177  Identities=19%  Similarity=0.218  Sum_probs=110.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh--------hHHHHHHHHcC--CchHHHHHHHHhcCCcccHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIAT--------GDLVREELASS--GSLSQQLSEIVNQGKLVSDEIIF  119 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~--------d~llr~~~~~~--~~~~~~i~~~l~~g~~~~~~~~~  119 (287)
                      ++++|+|.|++||||||++++|+++|   |..++.+        ++++|+.+...  ...+.....++-.+  ...+.+.
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~   79 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE   79 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence            36899999999999999999999999   8877766        55555544321  11111211111111  1112233


Q ss_pred             HHHHHHHHhcccCCCccEEEeCC----------CCC--HHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCcccc
Q 023080          120 NLLSKRLEAGQAGGESGFILDGF----------PRT--VKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQ  183 (287)
Q Consensus       120 ~~l~~~l~~~~~~~~~g~Ildg~----------p~~--~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~  183 (287)
                      ..+...+..+     ..+|.|.|          +..  ..+...+...    ..||++|+|++|++++++|+.+|.... 
T Consensus        80 ~~i~~~l~~g-----~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~-  153 (213)
T PRK13973         80 EVIRPALARG-----KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSD-  153 (213)
T ss_pred             HHHHHHHHCC-----CEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCC-
Confidence            3344444432     44566643          322  3355555542    359999999999999999999885211 


Q ss_pred             CCCccccccccccCCCCCCCccCCCCCCCcccccccccCC-CCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCC
Q 023080          184 CGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRA-DDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGG  262 (287)
Q Consensus       184 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~-~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~  262 (287)
                           +.                              .+. .++.+..+++.+.|.+..    ++|  ...++.||++++
T Consensus       154 -----~~------------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~--~~~~~~Ida~~~  192 (213)
T PRK13973        154 -----TP------------------------------DRFEKEDLAFHEKRREAFLQIA----AQE--PERCVVIDATAS  192 (213)
T ss_pred             -----cc------------------------------CchhhchHHHHHHHHHHHHHHH----HhC--CCcEEEEcCCCC
Confidence                 00                              111 234567777777776633    233  235788999999


Q ss_pred             cccHHHHHHHHhccch
Q 023080          263 IPESWPKLLEALNLDE  278 (287)
Q Consensus       263 ~eev~~~I~~~l~~~~  278 (287)
                      +++++.+|.++|....
T Consensus       193 ~e~V~~~I~~~i~~~~  208 (213)
T PRK13973        193 PEAVAAEIWAAVDQRL  208 (213)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987543

>PRK08356 hypothetical protein; Provisional

Probab=99.71  E-value=1.3e-16  Score=134.64  Aligned_cols=118  Identities=15%  Similarity=0.236  Sum_probs=84.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCC-------chHHH----HHHHHhcCCcccH----HH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSG-------SLSQQ----LSEIVNQGKLVSD----EI  117 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~-------~~~~~----i~~~l~~g~~~~~----~~  117 (287)
                      +.++|+|+|||||||||+|+.|+ ++|++++++++.++.......       ..+..    ...+++.|..+++    ++
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            45789999999999999999996 589999999986654332211       11111    1344555555553    44


Q ss_pred             HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      +..++.+.+..     ...|++||+ ++..|++.|...  ...+|+|++|.+++.+|+.+|.
T Consensus        83 ~~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~  136 (195)
T PRK08356         83 LIRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRG  136 (195)
T ss_pred             HHHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcC
Confidence            55555554422     136999999 999999888764  2479999999999999999885

>PRK06217 hypothetical protein; Validated

Probab=99.70  E-value=6.8e-16  Score=128.87  Aligned_cols=171  Identities=19%  Similarity=0.239  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.|++++|++++++|++++..  .+...+          ...+.+.....+...+..     +
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~-----~   64 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLRP-----R   64 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHhc-----C
Confidence            57999999999999999999999999999999987641  111111          112333344444444432     2


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcc
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH  214 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~  214 (287)
                      .+||+||++....  ..  ....+|.+|||++|.+++++|+.+|...+. |+.  .               .+       
T Consensus        65 ~~~vi~G~~~~~~--~~--~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~-~~~--~---------------~~-------  115 (183)
T PRK06217         65 EGWVLSGSALGWG--DP--LEPLFDLVVFLTIPPELRLERLRLREFQRY-GNR--I---------------LP-------  115 (183)
T ss_pred             CCEEEEccHHHHH--HH--HHhhCCEEEEEECCHHHHHHHHHcCccccc-Ccc--c---------------CC-------
Confidence            5899999876422  21  223478999999999999999999864320 100  0               00       


Q ss_pred             cccccccCCCCcHHHHHHHHHHHHh------hchHHHHHHHhc-CcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          215 CMSKLITRADDTEEVVKERLRVYNE------KSQPVEEFYRNR-GKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       215 ~~~~L~~r~~d~~~~i~~rl~~y~~------~~~~~~~~y~~~-~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                           ....+.....+.++...|..      .......++... ..++.+++..+++++.++|...|..
T Consensus       116 -----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        116 -----GGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             -----CCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence                 00000111223333333432      111122233322 4677889999999999999998854

>PRK13949 shikimate kinase; Provisional

Probab=99.69  E-value=1.9e-15  Score=124.51  Aligned_cols=108  Identities=21%  Similarity=0.347  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      .|+|+|+|||||||+++.||+.++++++++|.++....      +..+.+++. .|.....+....++.+ +...     
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~~~-----   70 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF------HKTVGDIFAERGEAVFRELERNMLHE-VAEF-----   70 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HHhC-----
Confidence            69999999999999999999999999999999887632      233444443 2433333444444444 3221     


Q ss_pred             ccEEE-e--CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          135 SGFIL-D--GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       135 ~g~Il-d--g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      .++|+ +  |++....+.+.+..   .+++|||++|.+++++|+..+
T Consensus        71 ~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~~~Ri~~~  114 (169)
T PRK13949         71 EDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVLFVRLRLA  114 (169)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHHHHHHhcC
Confidence            35555 5  35667666666655   358999999999999999753

>PRK13948 shikimate kinase; Provisional

Probab=99.67  E-value=3.2e-15  Score=124.34  Aligned_cols=115  Identities=17%  Similarity=0.116  Sum_probs=78.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLE  127 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~  127 (287)
                      ...+++..|+|+|++||||||+++.|++++|..++++|.++++.      .+..+.+++.. |+....+....++...+.
T Consensus         5 ~~~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~------~g~si~~if~~~Ge~~fR~~E~~~l~~l~~   78 (182)
T PRK13948          5 EIERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV------TGKSIPEIFRHLGEAYFRRCEAEVVRRLTR   78 (182)
T ss_pred             eccCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH------HhCCHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence            34557788999999999999999999999999999999888773      34455555543 443333444444444332


Q ss_pred             hcccCCCccEEEe--CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080          128 AGQAGGESGFILD--GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       128 ~~~~~~~~g~Ild--g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                      .     ...+|..  |.+....+...+..   ...+|||+++++++.+|+..
T Consensus        79 ~-----~~~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~~e~l~~Rl~~  122 (182)
T PRK13948         79 L-----DYAVISLGGGTFMHEENRRKLLS---RGPVVVLWASPETIYERTRP  122 (182)
T ss_pred             c-----CCeEEECCCcEEcCHHHHHHHHc---CCeEEEEECCHHHHHHHhcC
Confidence            2     1233433  34555555555554   34789999999999999943

>PRK13975 thymidylate kinase; Provisional

Probab=99.63  E-value=3.2e-14  Score=119.76  Aligned_cols=171  Identities=20%  Similarity=0.239  Sum_probs=99.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHH-HHH------H
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLL-SKR------L  126 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l-~~~------l  126 (287)
                      +++|+|.|++||||||+++.|+++++..+...        ...+..+..+++++..+. ........++ ..+      +
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i   72 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI   72 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999998533211        112334555556554432 2221111111 111      1


Q ss_pred             HhcccCCCccEEEeCCCCC-----------HHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080          127 EAGQAGGESGFILDGFPRT-----------VKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN  194 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~p~~-----------~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~  194 (287)
                      ... .. ...+|+|.|...           ......+.. ...||++|||+++++++.+|+..|..+             
T Consensus        73 ~~~-~~-~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~-------------  137 (196)
T PRK13975         73 EED-LK-KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE-------------  137 (196)
T ss_pred             HHH-Hc-CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc-------------
Confidence            111 11 246889865432           111112222 235999999999999999999887410             


Q ss_pred             ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHH
Q 023080          195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEA  273 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~  273 (287)
                                                  ..+..+..++..+.|.+...  ...|.....++.||++ .++++++++|.+.
T Consensus       138 ----------------------------~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~  187 (196)
T PRK13975        138 ----------------------------IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNK  187 (196)
T ss_pred             ----------------------------ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHH
Confidence                                        01223444444555555433  2222223347889985 8999999999998


Q ss_pred             hccch
Q 023080          274 LNLDE  278 (287)
Q Consensus       274 l~~~~  278 (287)
                      |....
T Consensus       188 i~~~~  192 (196)
T PRK13975        188 IKDKI  192 (196)
T ss_pred             HHHhC
Confidence            86543

>PRK08233 hypothetical protein; Provisional

Probab=99.63  E-value=7.2e-15  Score=122.03  Aligned_cols=172  Identities=16%  Similarity=0.207  Sum_probs=96.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG-VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      ++++|+|.|+|||||||+|+.|++.++ ..++..|.+ +..     .....+...+..+... +......+...+.....
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~   74 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFD-----NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIA   74 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Ecc-----cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence            357899999999999999999999996 333433322 110     1112223333333322 22233333333332211


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                      .....+|+..+|......+ +.  ..+|++|||++|.+++++|+..|...                              
T Consensus        75 ~~~~~~vivd~~~~~~~~~-~~--~~~d~~i~l~~~~~~~~~R~~~R~~~------------------------------  121 (182)
T PRK08233         75 KSNVDYIIVDYPFAYLNSE-MR--QFIDVTIFIDTPLDIAMARRILRDFK------------------------------  121 (182)
T ss_pred             CCCceEEEEeeehhhccHH-HH--HHcCEEEEEcCCHHHHHHHHHHHHhh------------------------------
Confidence            1012455544444322211 11  13789999999999999998877411                              


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHH-HHh--cCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEF-YRN--RGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~-y~~--~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                  +++.+.+.+++..|.....+.... +..  ....+.||++.++++++++|...|..
T Consensus       122 ------------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        122 ------------EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             ------------hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence                        111223444566666554443211 111  12356799999999999999998864

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.62  E-value=6.1e-14  Score=111.64  Aligned_cols=112  Identities=22%  Similarity=0.247  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|.|.|+|||||||+|+.||++||+++++.+.++|+..+..+..-..+.++-+++-.+. ..+.+.......+      
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD-~~iD~rq~e~a~~------   73 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEID-KEIDRRQKELAKE------   73 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhh-HHHHHHHHHHHHc------
Confidence            579999999999999999999999999999999999987766665566666655543332 2222222222222      


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..+|++|.-..      |.....+|+.|||.+|.++..+|+..|-
T Consensus        74 ~nvVlegrLA~------Wi~k~~adlkI~L~Apl~vRa~Ria~RE  112 (179)
T COG1102          74 GNVVLEGRLAG------WIVREYADLKIWLKAPLEVRAERIAKRE  112 (179)
T ss_pred             CCeEEhhhhHH------HHhccccceEEEEeCcHHHHHHHHHHhc
Confidence            57899874211      1112457899999999999999999883

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.62  E-value=8.5e-15  Score=123.39  Aligned_cols=165  Identities=21%  Similarity=0.222  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH--------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD--------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~--------------  115 (287)
                      .+|+|+|++||||||+++.|++ +|++++++|.+.++.+..+++....+.+.+..+.     .+..              
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5799999999999999999998 9999999999999988877777777766664322     2222              


Q ss_pred             ----HHHHHHHHHHHHhcc--cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080          116 ----EIIFNLLSKRLEAGQ--AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN  189 (287)
Q Consensus       116 ----~~~~~~l~~~l~~~~--~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~  189 (287)
                          .+++..+...+...-  .....-+|+|. |.-.+  ..+.  ..+|.+|++++|+++.++|+..|.          
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e--~~~~--~~~D~vi~V~a~~e~~~~Rl~~R~----------  146 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE--NGLE--KLVDRVLVVDAPPETQLERLMARD----------  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc--CCch--hhCCeEEEEECCHHHHHHHHHHcC----------
Confidence                223333333332211  11013456664 22111  0011  137999999999999999999874          


Q ss_pred             cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHH
Q 023080          190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPK  269 (287)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~  269 (287)
                                                        ..+.+.+..|+..+..    ..+.-...+  +.|+++++++++..+
T Consensus       147 ----------------------------------~~s~e~~~~ri~~Q~~----~~~~~~~ad--~vI~N~g~~e~l~~q  186 (194)
T PRK00081        147 ----------------------------------GLSEEEAEAIIASQMP----REEKLARAD--DVIDNNGDLEELRKQ  186 (194)
T ss_pred             ----------------------------------CCCHHHHHHHHHHhCC----HHHHHHhCC--EEEECCCCHHHHHHH
Confidence                                              2345667777765432    222222222  568888899999999


Q ss_pred             HHHHhc
Q 023080          270 LLEALN  275 (287)
Q Consensus       270 I~~~l~  275 (287)
                      +...++
T Consensus       187 v~~i~~  192 (194)
T PRK00081        187 VERLLQ  192 (194)
T ss_pred             HHHHHH
Confidence            988874

>PRK13946 shikimate kinase; Provisional

Probab=99.62  E-value=2.7e-14  Score=119.30  Aligned_cols=167  Identities=19%  Similarity=0.205  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhccc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .+..|+|+|++||||||+++.||+++|++++++|.++....  +....    +++.. |.....+....++...+..   
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~----e~~~~~ge~~~~~~e~~~l~~l~~~---   79 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIA----EIFAAYGEPEFRDLERRVIARLLKG---   79 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHH----HHHHHHCHHHHHHHHHHHHHHHHhc---
Confidence            55679999999999999999999999999999988766532  22222    22221 2222222233334333322   


Q ss_pred             CCCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          132 GGESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       132 ~~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                        +..+|.+|  .+........+..   -.++|||++|.+++++|+..|...|.                          
T Consensus        80 --~~~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~~~Rl~~r~~rp~--------------------------  128 (184)
T PRK13946         80 --GPLVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVLWERVSRRDTRPL--------------------------  128 (184)
T ss_pred             --CCeEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHhcCCCCCCc--------------------------
Confidence              23455554  3344444444433   35789999999999999987742220                          


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                                .. ..+..+.++..++.       ...+|.. ..++......+++++.+.|.+.|....
T Consensus       129 ----------~~-~~~~~~~i~~~~~~-------R~~~y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~  178 (184)
T PRK13946        129 ----------LR-TADPKETLARLMEE-------RYPVYAE-ADLTVASRDVPKEVMADEVIEALAAYL  178 (184)
T ss_pred             ----------CC-CCChHHHHHHHHHH-------HHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence                      00 01222333322222       2234655 345445566799999999999887644

>PLN02924 thymidylate kinase

Probab=99.61  E-value=3.2e-14  Score=121.91  Aligned_cols=174  Identities=20%  Similarity=0.191  Sum_probs=105.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHH-HHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN-LLSKRLEA  128 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~-~l~~~l~~  128 (287)
                      +..++++|+|.|++||||||+++.|+++++...+.+ .++++ ...++..|+.+++++..+.........- ....+..+
T Consensus        12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~   89 (220)
T PLN02924         12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEK   89 (220)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            345788999999999999999999999997665554 23333 2235678888888887654443332211 11111111


Q ss_pred             c-----ccCCCccEEEeCCCCC-----------HHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080          129 G-----QAGGESGFILDGFPRT-----------VKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA  191 (287)
Q Consensus       129 ~-----~~~~~~g~Ildg~p~~-----------~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~  191 (287)
                      .     ....+..+|+|-|..+           .++...+.. ...||++|||++|++++++|...+. +          
T Consensus        90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~-~----------  158 (220)
T PLN02924         90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG-E----------  158 (220)
T ss_pred             HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c----------
Confidence            0     0111467888865432           222222332 2359999999999999999864210 0          


Q ss_pred             cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080          192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL  271 (287)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~  271 (287)
                                                    + -+..+..++-.+.|.+..        + ..++.||+++++++|+++|.
T Consensus       159 ------------------------------~-~E~~~~~~rv~~~Y~~la--------~-~~~~vIDa~~sieeV~~~I~  198 (220)
T PLN02924        159 ------------------------------R-YEKLEFQKKVAKRFQTLR--------D-SSWKIIDASQSIEEVEKKIR  198 (220)
T ss_pred             ------------------------------c-cccHHHHHHHHHHHHHHh--------h-cCEEEECCCCCHHHHHHHHH
Confidence                                          0 112233332222332221        1 34778899999999999999


Q ss_pred             HHhcc
Q 023080          272 EALNL  276 (287)
Q Consensus       272 ~~l~~  276 (287)
                      +.|..
T Consensus       199 ~~I~~  203 (220)
T PLN02924        199 EVVLD  203 (220)
T ss_pred             HHHHH
Confidence            88864

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.61  E-value=3.1e-14  Score=117.41  Aligned_cols=108  Identities=20%  Similarity=0.226  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      .|+|+|++||||||+++.||+++|+++++.|.++....      +..+.+++...   +.+.+...-.+.+.... .  .
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~---g~~~~~~~e~~~~~~~~-~--~   71 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVERE---GWAGFRARESAALEAVT-A--P   71 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHH---CHHHHHHHHHHHHHHhc-C--C
Confidence            58889999999999999999999999999988876632      22222333221   11222222222222111 1  2


Q ss_pred             cEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          136 GFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       136 g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      .+|+. |  ++........+..   .+++|||++|++++++|+..|
T Consensus        72 ~~vi~~ggg~vl~~~~~~~l~~---~~~~v~l~~~~~~~~~Rl~~r  114 (171)
T PRK03731         72 STVIATGGGIILTEENRHFMRN---NGIVIYLCAPVSVLANRLEAN  114 (171)
T ss_pred             CeEEECCCCccCCHHHHHHHHh---CCEEEEEECCHHHHHHHHccc
Confidence            34444 3  3444444444433   568999999999999999876

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.61  E-value=3.1e-14  Score=119.99  Aligned_cols=166  Identities=18%  Similarity=0.213  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC------cccH-------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK------LVSD-------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~------~~~~-------------  115 (287)
                      ++|+|+|++||||||+++.|++.+|+++++.|++.++.+..+++....+.+.+..+.      .+..             
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            479999999999999999999999999999999999988888888777777664321      1221             


Q ss_pred             -----HHHHHHHHHHHHhc--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          116 -----EIIFNLLSKRLEAG--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       116 -----~~~~~~l~~~l~~~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                           ++++..+...+...  ......-+|+|. |...+.  .+.  ..+|.+|++++|.++.++|+..|+         
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~---------  147 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRD---------  147 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcC---------
Confidence                 12333333333211  111023455552 221110  011  137999999999999999999884         


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP  268 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~  268 (287)
                                                         .-+.+.+..|++...    +....-. ... +.|+++++++++..
T Consensus       148 -----------------------------------g~s~e~~~~ri~~Q~----~~~~k~~-~aD-~vI~N~g~~e~l~~  186 (195)
T PRK14730        148 -----------------------------------GLTEEEAEARINAQW----PLEEKVK-LAD-VVLDNSGDLEKLYQ  186 (195)
T ss_pred             -----------------------------------CCCHHHHHHHHHhCC----CHHHHHh-hCC-EEEECCCCHHHHHH
Confidence                                               123456666665421    2222222 223 35788889999999


Q ss_pred             HHHHHhc
Q 023080          269 KLLEALN  275 (287)
Q Consensus       269 ~I~~~l~  275 (287)
                      ++.+.+.
T Consensus       187 qv~~~l~  193 (195)
T PRK14730        187 QVDQLLK  193 (195)
T ss_pred             HHHHHHh
Confidence            9988763

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.61  E-value=8.6e-15  Score=131.40  Aligned_cols=162  Identities=16%  Similarity=0.202  Sum_probs=106.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      +.+|+|.|+|||||||+|+.|++++ +..+++.|++ +..+......+..  .+..++...-.......+...+..    
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~----   74 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS----   74 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence            4678899999999999999999999 8999999665 4433322111100  000000000011222233333332    


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhc---Ccc-EEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVM---DID-LVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~---~~d-~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                       +..+|+|+++.+..+...+....   ... .+|+|+++.+++.+|+.+|..+                           
T Consensus        75 -g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~---------------------------  126 (300)
T PHA02530         75 -GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER---------------------------  126 (300)
T ss_pred             -CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC---------------------------
Confidence             46899999999888887665432   233 3689999999999999998422                           


Q ss_pred             CCCCcccccccccCCCCcHHHHH---HHHHHHHhhchHHHHHHHhcCcEEEEeCCCCccc
Q 023080          209 LLPPAHCMSKLITRADDTEEVVK---ERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPE  265 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~---~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~ee  265 (287)
                                     ....+.++   +|++.|.....|+...+.....++.+|.++++.+
T Consensus       127 ---------------~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        127 ---------------AVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             ---------------CCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence                           22345555   7888888888888777766567788888887765

>PRK00625 shikimate kinase; Provisional

Probab=99.60  E-value=1.7e-14  Score=119.18  Aligned_cols=114  Identities=24%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      +.|+|+|+|||||||+++.||+++|++++++|+++++.....  ....+.++++. |.....+.....+.. +.    . 
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~-l~----~-   72 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTS-LP----V-   72 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHH-hc----c-
Confidence            469999999999999999999999999999999998744321  11234444443 322222222222222 21    1 


Q ss_pred             CccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          134 ESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       134 ~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ...+|.+|  .+...+..+.+   .....+|||++|.+++.+|+..|.
T Consensus        73 ~~~VIs~GGg~~~~~e~~~~l---~~~~~Vv~L~~~~e~l~~Rl~~R~  117 (173)
T PRK00625         73 IPSIVALGGGTLMIEPSYAHI---RNRGLLVLLSLPIATIYQRLQKRG  117 (173)
T ss_pred             CCeEEECCCCccCCHHHHHHH---hcCCEEEEEECCHHHHHHHHhcCC
Confidence            23455454  33444333333   234579999999999999999874

>PRK13947 shikimate kinase; Provisional

Probab=99.60  E-value=3.6e-14  Score=116.88  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=69.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      .|+|+|+|||||||+|+.||+.+|+++++.|.+++..      .|..+.+++.. |.....+....++.. +...     
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~ge~~~~~~e~~~~~~-l~~~-----   70 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM------TGMTVAEIFEKDGEVRFRSEEKLLVKK-LARL-----   70 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh------cCCcHHHHHHHhChHHHHHHHHHHHHH-Hhhc-----
Confidence            5999999999999999999999999999999887663      22233333332 222212222222322 2221     


Q ss_pred             ccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..+|+. |  ++........+..   .+++|||+++++.+.+|+..|.
T Consensus        71 ~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~  115 (171)
T PRK13947         71 KNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKK  115 (171)
T ss_pred             CCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCC
Confidence            233333 2  3444444444443   3579999999999999998764

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.60  E-value=3.8e-14  Score=119.92  Aligned_cols=178  Identities=20%  Similarity=0.235  Sum_probs=108.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-CcccHHHHHHHH-HHHHHh--
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-KLVSDEIIFNLL-SKRLEA--  128 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-~~~~~~~~~~~l-~~~l~~--  128 (287)
                      ++++|+|.|+.||||||+++.|++++.-..+++ -+.+  .+.++++++.+++++.++ ..+......-++ ..+..+  
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v-~~tr--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~   78 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV-VLTR--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE   78 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEe--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999984443322 1222  256678899999988876 334333322222 111111  


Q ss_pred             ----cccCCCccEEEeCCCC------------CHHHHHHHHHh-c---CccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          129 ----GQAGGESGFILDGFPR------------TVKQAEILEEV-M---DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       129 ----~~~~~~~g~Ildg~p~------------~~~~~~~l~~~-~---~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                          +....+..+|+|-|..            ..++...+... .   .||++|||++|+++.++|+.+|+...      
T Consensus        79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~------  152 (208)
T COG0125          79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR------  152 (208)
T ss_pred             HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc------
Confidence                1111145677775432            22333333333 2   49999999999999999999985310      


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW  267 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~  267 (287)
                                                      .+-+. ..+..++..+.|.+    +.+.+.  ..+++||++.+++++.
T Consensus       153 --------------------------------~r~E~~~~~f~~kvr~~Y~~----la~~~~--~r~~vIda~~~~e~v~  194 (208)
T COG0125         153 --------------------------------DRFEKEDDEFLEKVREGYLE----LAAKFP--ERIIVIDASRPLEEVH  194 (208)
T ss_pred             --------------------------------chhhhHHHHHHHHHHHHHHH----HHhhCC--CeEEEEECCCCHHHHH
Confidence                                            00011 11223333333333    222222  2488999999999999


Q ss_pred             HHHHHHhccc
Q 023080          268 PKLLEALNLD  277 (287)
Q Consensus       268 ~~I~~~l~~~  277 (287)
                      .+|..+|..-
T Consensus       195 ~~i~~~l~~~  204 (208)
T COG0125         195 EEILKILKER  204 (208)
T ss_pred             HHHHHHHHHh
Confidence            9999888753

>PRK04040 adenylate kinase; Provisional

Probab=99.59  E-value=1.9e-13  Score=114.49  Aligned_cols=175  Identities=21%  Similarity=0.237  Sum_probs=104.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCch--HHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSL--SQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~--~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      |++|+|+|+|||||||+++.|++++  ++.+++.++++++.....+..  ...+...    ......-+..+....+...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence            5789999999999999999999999  899999999988766544321  1122111    1011111222333333332


Q ss_pred             ccCCCccEEEeCCCC--C------HHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCC
Q 023080          130 QAGGESGFILDGFPR--T------VKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGN  201 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~--~------~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~  201 (287)
                      . . +..+|+||+..  +      --....+.. ..||.+|+|.++++++++|..+.. .                    
T Consensus        78 ~-~-~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~-~--------------------  133 (188)
T PRK04040         78 A-G-EGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDE-T--------------------  133 (188)
T ss_pred             h-c-CCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhccc-c--------------------
Confidence            1 1 24599998431  1      011222333 369999999999999999887520 0                    


Q ss_pred             CCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          202 PSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       202 ~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                        -.|..++.+.++.+++........ ..++.....++.+|-++.+++.+++|..+|.
T Consensus       134 ------------------R~R~~es~e~I~~~~~~a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~  188 (188)
T PRK04040        134 ------------------RRRDVETEEDIEEHQEMNRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIVEVLR  188 (188)
T ss_pred             ------------------cCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence                              024456677777666654442211 1112222334445544459999999988763

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.57  E-value=1.2e-13  Score=114.28  Aligned_cols=112  Identities=15%  Similarity=0.235  Sum_probs=70.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhccc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      ++..|+|+|++||||||+++.|++.+|++++++|..+....      +..+..++. .|.....+....++.. +...  
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~------g~~i~~~~~~~g~~~fr~~e~~~l~~-l~~~--   73 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT------GADIGWVFDVEGEEGFRDREEKVINE-LTEK--   73 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh------CcCHhHHHHHhCHHHHHHHHHHHHHH-HHhC--
Confidence            35579999999999999999999999999999988766532      112222222 1221111222233333 2221  


Q ss_pred             CCCccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          132 GGESGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       132 ~~~~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                         .++|+. |  .+.+......|..   .+.+|||++|.+++++|+..+.
T Consensus        74 ---~~~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~~e~~~~Ri~~~~  118 (172)
T PRK05057         74 ---QGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDK  118 (172)
T ss_pred             ---CCEEEEcCCchhCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCC
Confidence               245554 2  3344444444544   4589999999999999997654

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.57  E-value=8.5e-14  Score=117.87  Aligned_cols=172  Identities=21%  Similarity=0.262  Sum_probs=97.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC---CeeehhHHHHHHHHcCCchHHHHHHHHhc--CCcccHHHHHHHHHHH--
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV---PHIATGDLVREELASSGSLSQQLSEIVNQ--GKLVSDEIIFNLLSKR--  125 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~---~~i~~d~llr~~~~~~~~~~~~i~~~l~~--g~~~~~~~~~~~l~~~--  125 (287)
                      ++++|+|.|++||||||+++.|++.++.   .++.+    ++  ..+...++.+...+..  ....+.......+..+  
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----RE--PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----eC--CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999998732   22211    11  1234456666666652  2222222111111111  


Q ss_pred             -----HHhcccCCCccEEEeCCCCC------------HHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccC
Q 023080          126 -----LEAGQAGGESGFILDGFPRT------------VKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQC  184 (287)
Q Consensus       126 -----l~~~~~~~~~g~Ildg~p~~------------~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~  184 (287)
                           +...... +..+|+|-++.+            ..+...+...    ..||++|||++|++++.+|+.+|+..   
T Consensus        76 ~~~~~i~~~l~~-g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~---  151 (205)
T PRK00698         76 HLEEVIKPALAR-GKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL---  151 (205)
T ss_pred             HHHHHHHHHHHC-CCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence                 1111111 457888843221            2233333332    35999999999999999999988510   


Q ss_pred             CCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHhhchHHHHHHHhcCcEEEEeCCCCc
Q 023080          185 GGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLR-VYNEKSQPVEEFYRNRGKLLEFDLPGGI  263 (287)
Q Consensus       185 g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~-~y~~~~~~~~~~y~~~~~~~~id~~~~~  263 (287)
                                                          .+.+.....+..++. .|..    +.+.+  ...++.||+++++
T Consensus       152 ------------------------------------~~~~~~~~~~~~~~~~~y~~----~~~~~--~~~~~~Id~~~~~  189 (205)
T PRK00698        152 ------------------------------------DRIEQEGLDFFERVREGYLE----LAEKE--PERIVVIDASQSL  189 (205)
T ss_pred             ------------------------------------chhhhhhHHHHHHHHHHHHH----HHHhC--CCeEEEEeCCCCH
Confidence                                                000111112223333 2332    22211  2357889999999


Q ss_pred             ccHHHHHHHHhcc
Q 023080          264 PESWPKLLEALNL  276 (287)
Q Consensus       264 eev~~~I~~~l~~  276 (287)
                      ++++++|.+.|..
T Consensus       190 e~v~~~i~~~i~~  202 (205)
T PRK00698        190 EEVHEDILAVIKA  202 (205)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988864

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.57  E-value=1.2e-13  Score=113.77  Aligned_cols=114  Identities=25%  Similarity=0.299  Sum_probs=69.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      .+++.|+|+|+|||||||+|+.|++.+|+++++.|++++....  ...    .+.+. .|.....+.....+......  
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~l~~~--   73 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSI----PEIFEEEGEAAFRELEEEVLAELLAR--   73 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCH----HHHHHHHCHHHHHHHHHHHHHHHHhc--
Confidence            3567899999999999999999999999999999888766321  122    22222 12211112222333333321  


Q ss_pred             cCCCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          131 AGGESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       131 ~~~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                         ...+|..|  +.........+.   ....+|||++|.+++.+|+..|.
T Consensus        74 ---~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~  118 (175)
T PRK00131         74 ---HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDR  118 (175)
T ss_pred             ---CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCC
Confidence               12344444  222222233332   23578999999999999998764

>PRK04182 cytidylate kinase; Provisional

Probab=99.56  E-value=2.4e-13  Score=112.57  Aligned_cols=113  Identities=24%  Similarity=0.282  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|++||||||+|+.|++++|+++++++++++......+.....+...   +...+.  +...+...+...... +
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~-~   74 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPE--IDKEIDRRQLEIAEK-E   74 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCch--HHHHHHHHHHHHHhc-C
Confidence            4799999999999999999999999999999998888655433322222222   221111  111122212111101 3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .++|++|.-...    .+.  ..++++|||++|.+++++|+..|.
T Consensus        75 ~~~Vi~g~~~~~----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~  113 (180)
T PRK04182         75 DNVVLEGRLAGW----MAK--DYADLKIWLKAPLEVRAERIAERE  113 (180)
T ss_pred             CCEEEEEeecce----Eec--CCCCEEEEEECCHHHHHHHHHhcc
Confidence            578999742211    011  126789999999999999998874

>PRK08118 topology modulation protein; Reviewed

Probab=99.56  E-value=2.2e-14  Score=118.04  Aligned_cols=99  Identities=22%  Similarity=0.311  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.|++.++++++++|++++..                .....+++....++...+..      
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~------   59 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE------   59 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC------
Confidence            47999999999999999999999999999998887530                01223344444444443432      


Q ss_pred             ccEEEeCCCC-CHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080          135 SGFILDGFPR-TVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       135 ~g~Ildg~p~-~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                      .+||+||.+. +..  ..+   ..+|.+|||++|.++++.|+.+|..
T Consensus        60 ~~wVidG~~~~~~~--~~l---~~~d~vi~Ld~p~~~~~~R~~~R~~  101 (167)
T PRK08118         60 DEWIIDGNYGGTMD--IRL---NAADTIIFLDIPRTICLYRAFKRRV  101 (167)
T ss_pred             CCEEEeCCcchHHH--HHH---HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence            4799999544 432  122   2489999999999999999998864

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.56  E-value=9.2e-14  Score=118.36  Aligned_cols=169  Identities=12%  Similarity=0.162  Sum_probs=106.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc--------CC-cccH-------
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ--------GK-LVSD-------  115 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~--------g~-~~~~-------  115 (287)
                      ..++.|.|+|++||||||+++.|++ +|+++++.|.+.++....++.....+...+..        |. .+..       
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v   81 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV   81 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence            3567899999999999999999997 89999999988888665544333333333211        11 0111       


Q ss_pred             -----------HHHHHHHHHH----HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080          116 -----------EIIFNLLSKR----LEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       116 -----------~~~~~~l~~~----l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                                 .+++..+...    +...... +..+++-+.|.-.+.  .+  ...+|.+|++++|.+++++|+..|. 
T Consensus        82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~-~~~vvv~e~pLL~e~--~~--~~~~d~ii~V~a~~e~~~~Rl~~R~-  155 (208)
T PRK14731         82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARR-GKRILVKEAAILFES--GG--DAGLDFIVVVAADTELRLERAVQRG-  155 (208)
T ss_pred             hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhc-CCCEEEEEeeeeeec--Cc--hhcCCeEEEEECCHHHHHHHHHHcC-
Confidence                       1122222222    2221111 224444344432110  01  1237999999999999999999984 


Q ss_pred             cccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC
Q 023080          181 CSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP  260 (287)
Q Consensus       181 ~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~  260 (287)
                                                                 ..+.+.+.+|++.+......+    ... . +.|+++
T Consensus       156 -------------------------------------------~~s~e~~~~Ri~~q~~~~~~~----~~a-d-~vI~N~  186 (208)
T PRK14731        156 -------------------------------------------MGSREEIRRRIAAQWPQEKLI----ERA-D-YVIYNN  186 (208)
T ss_pred             -------------------------------------------CCCHHHHHHHHHHcCChHHHH----HhC-C-EEEECC
Confidence                                                       235678888888765544433    122 2 457888


Q ss_pred             CCcccHHHHHHHHhcc
Q 023080          261 GGIPESWPKLLEALNL  276 (287)
Q Consensus       261 ~~~eev~~~I~~~l~~  276 (287)
                      ++++++..+|.+.+..
T Consensus       187 g~~e~l~~~i~~~~~~  202 (208)
T PRK14731        187 GTLDELKAQTEQLYQV  202 (208)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988753

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.55  E-value=7.6e-14  Score=117.42  Aligned_cols=119  Identities=24%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC---CeeehhHHHHHHHHcCCchHHHHHHHHhcCC--cccHHHHH--------H
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV---PHIATGDLVREELASSGSLSQQLSEIVNQGK--LVSDEIIF--------N  120 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~---~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~--~~~~~~~~--------~  120 (287)
                      +++|+|.|++||||||+++.|++.++.   .++-+    .  ...+++.+..+.+++..+.  ........        .
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~----~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~   76 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT----R--EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE   76 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----e--CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            678999999999999999999999854   23211    0  1123345556666543221  12211110        1


Q ss_pred             HHHHHHHhcccCCCccEEEeCC----------CCCH--HHHHHHHH-hcC--ccEEEEEecCHHHHHHHHhCCC
Q 023080          121 LLSKRLEAGQAGGESGFILDGF----------PRTV--KQAEILEE-VMD--IDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       121 ~l~~~l~~~~~~~~~g~Ildg~----------p~~~--~~~~~l~~-~~~--~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+...+...... +..+|+|.+          +++.  .+...+.. ...  ||++|||+++++++++|+..|.
T Consensus        77 ~~~~~i~~~l~~-~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~  149 (195)
T TIGR00041        77 HLEDKIKPALAE-GKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG  149 (195)
T ss_pred             HHHHHHHHHHhC-CCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            111112111111 346778843          2221  22223322 223  9999999999999999998874

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PLN02199 shikimate kinase

Probab=99.55  E-value=2.7e-13  Score=119.40  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=76.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhccc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .+..|+|+|++||||||+++.||+.+|++++++|.++++...     +..+.+++.. |+....+.....+.+....   
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~---  172 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR---  172 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence            456799999999999999999999999999999999988532     3344555543 4434344444444443222   


Q ss_pred             CCCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080          132 GGESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       132 ~~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                        ...+|-.|  .+........+.    -..+|||+++.+++.+|+..
T Consensus       173 --~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        173 --YQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             --CCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhh
Confidence              12344343  444555455453    24799999999999999985

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.55  E-value=8.1e-13  Score=108.56  Aligned_cols=113  Identities=22%  Similarity=0.201  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|.|++||||||+|+.|++++|+++++.+++++......+.....+......+.     .+...+...+...... +
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~-~   74 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALK-E   74 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhc-C
Confidence            479999999999999999999999999999999888765433222222222222221     1122222222221111 3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..+|++|......    +  ...++++|+|++|.++..+|+..|.
T Consensus        75 ~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r~~R~~~R~  113 (171)
T TIGR02173        75 KNVVLESRLAGWI----V--REYADVKIWLKAPLEVRARRIAKRE  113 (171)
T ss_pred             CCEEEEeccccee----e--cCCcCEEEEEECCHHHHHHHHHHcc
Confidence            5789998543211    1  1237899999999999999999874

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.54  E-value=4.2e-13  Score=113.53  Aligned_cols=165  Identities=18%  Similarity=0.216  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccH-------------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD-------------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~-------------------  115 (287)
                      +.|.|+|++||||||+++.|++ +|+++++.|++.++.+..++.....+.+.+..+...++                   
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            4689999999999999999997 89999999999999888888777777777755433221                   


Q ss_pred             ----HHHHHHHHHHHH----hcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080          116 ----EIIFNLLSKRLE----AGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN  187 (287)
Q Consensus       116 ----~~~~~~l~~~l~----~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~  187 (287)
                          .+++..+...+.    .....+...++++ .|.-.+.  .+  ...+|.+|++++|.++.++|+..|+        
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~--g~--~~~~D~vi~V~a~~e~ri~Rl~~R~--------  147 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEK--GL--DRKMDLVVVVDVDVEERVRRLVEKR--------  147 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEc--Cc--cccCCeEEEEECCHHHHHHHHHHcC--------
Confidence                112222222221    1100101233443 2221110  00  0137899999999999999998873        


Q ss_pred             cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080          188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW  267 (287)
Q Consensus       188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~  267 (287)
                                                          .-+.+.+..|++.+....    .... ... +.|+++++++++.
T Consensus       148 ------------------------------------g~s~e~~~~ri~~Q~~~~----~k~~-~ad-~vI~N~g~~e~l~  185 (200)
T PRK14734        148 ------------------------------------GLDEDDARRRIAAQIPDD----VRLK-AAD-IVVDNNGTREQLL  185 (200)
T ss_pred             ------------------------------------CCCHHHHHHHHHhcCCHH----HHHH-hCC-EEEECcCCHHHHH
Confidence                                                123466776776654431    1122 222 4688999999999


Q ss_pred             HHHHHHhc
Q 023080          268 PKLLEALN  275 (287)
Q Consensus       268 ~~I~~~l~  275 (287)
                      .++..+++
T Consensus       186 ~~v~~~~~  193 (200)
T PRK14734        186 AQVDGLIA  193 (200)
T ss_pred             HHHHHHHH
Confidence            99998774

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.54  E-value=6.5e-13  Score=111.50  Aligned_cols=170  Identities=18%  Similarity=0.217  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC---cccHHHHH-------HH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGK---LVSDEIIF-------NL  121 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~---~~~~~~~~-------~~  121 (287)
                      ++|+|.|++||||||+++.|++.+   |..++.+..      ...+..+..++.++..+.   ..+.....       ..
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999998   555544421      122234555555554321   11111110       11


Q ss_pred             HHHHHHhcccCCCccEEEeCCCCC------------HHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080          122 LSKRLEAGQAGGESGFILDGFPRT------------VKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCG  185 (287)
Q Consensus       122 l~~~l~~~~~~~~~g~Ildg~p~~------------~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g  185 (287)
                      +.+.+...... +..+|+|.++.+            ..+...+..    ...|+.+|||+++++++.+|+.+|....   
T Consensus        75 ~~~~~~~~~~~-~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~---  150 (200)
T cd01672          75 VEEVIKPALAR-GKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD---  150 (200)
T ss_pred             HHHHHHHHHhC-CCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---
Confidence            11111111111 467888843311            122233322    1258999999999999999999885211   


Q ss_pred             CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCccc
Q 023080          186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPE  265 (287)
Q Consensus       186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~ee  265 (287)
                                                         ...+...+..++....|..    +...+  ...++.||++.++++
T Consensus       151 -----------------------------------~~~~~~~~~~~~~~~~y~~----~~~~~--~~~~~~id~~~~~e~  189 (200)
T cd01672         151 -----------------------------------RDEQEGLEFHERVREGYLE----LAAQE--PERIIVIDASQPLEE  189 (200)
T ss_pred             -----------------------------------hhhhhhHHHHHHHHHHHHH----HHHhC--CCeEEEEeCCCCHHH
Confidence                                               0001112222222222222    22222  235789999999999


Q ss_pred             HHHHHHHHhc
Q 023080          266 SWPKLLEALN  275 (287)
Q Consensus       266 v~~~I~~~l~  275 (287)
                      ++++|.+.|.
T Consensus       190 i~~~i~~~i~  199 (200)
T cd01672         190 VLAEILKAIL  199 (200)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.53  E-value=2.4e-13  Score=131.18  Aligned_cols=116  Identities=18%  Similarity=0.229  Sum_probs=83.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      .|..+|+|+|+|||||||+++.||+++|++++|+|+.+.+      ..|..+.+++. .|+....+...+.+.+.+... 
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~------~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~-   76 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER------EIGMSIPSYFEEYGEPAFREVEADVVADMLEDF-   76 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH------HHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            4667899999999999999999999999999999999887      34566777774 455555555555555543321 


Q ss_pred             cCCCccEEEeC--CCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCC
Q 023080          131 AGGESGFILDG--FPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       131 ~~~~~g~Ildg--~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                          ..+|-.|  .+...+....|..+. .-..+|||+++.+++.+|+..+
T Consensus        77 ----~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~  123 (542)
T PRK14021         77 ----DGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRG  123 (542)
T ss_pred             ----CeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCC
Confidence                2344343  455555555554322 2348999999999999999754

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.53  E-value=5.9e-13  Score=108.85  Aligned_cols=156  Identities=19%  Similarity=0.177  Sum_probs=89.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH-----HHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE-----ELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~-----~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      |+|+|++||||||+++.|++.++..+++.|++...     .....+.........+        ..+...+...+...  
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~--   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWL--------QNLNDASTAAAAKN--   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHH--------HHHHHHHHHHHhcC--
Confidence            57899999999999999999999999999887422     1111100000000000        01112222222222  


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                         ...|+|...........+...+..-.+|||++|.+++.+|+..|..+                              
T Consensus        71 ---~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------------------  117 (163)
T TIGR01313        71 ---KVGIITCSALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGH------------------------------  117 (163)
T ss_pred             ---CCEEEEecccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCC------------------------------
Confidence               23355543333344444443332334699999999999999988411                              


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                  ....+.+..++..+..   +.   +.+ ..++.||++++++++.++|.+.|
T Consensus       118 ------------~~~~~~i~~~~~~~~~---~~---~~e-~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       118 ------------FMKADMLESQFAALEE---PL---ADE-TDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             ------------CCCHHHHHHHHHHhCC---CC---CCC-CceEEEECCCCHHHHHHHHHHHH
Confidence                        0113445544443321   10   111 24789999999999999988765

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.52  E-value=4.6e-13  Score=108.04  Aligned_cols=153  Identities=25%  Similarity=0.306  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |.|+|+|.||+||||+|+.|+ .+|+.+++..+++.+.-     +.....+. .....+..+.+...+...+.      .
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-----~~~~~de~-r~s~~vD~d~~~~~le~~~~------~   67 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG-----LYTEYDEL-RKSVIVDVDKLRKRLEELLR------E   67 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-----CeeccCCc-cceEEeeHHHHHHHHHHHhc------c
Confidence            579999999999999999999 89999999988876621     00000000 00011222223333333331      2


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcc
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH  214 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~  214 (287)
                      .+.|+|+....+        +..+|+||.|.++++++.+||++|+.++                                
T Consensus        68 ~~~Ivd~H~~hl--------~~~~dlVvVLR~~p~~L~~RLk~RGy~~--------------------------------  107 (180)
T COG1936          68 GSGIVDSHLSHL--------LPDCDLVVVLRADPEVLYERLKGRGYSE--------------------------------  107 (180)
T ss_pred             CCeEeechhhhc--------CCCCCEEEEEcCCHHHHHHHHHHcCCCH--------------------------------
Confidence            578898753221        1138999999999999999999997432                                


Q ss_pred             cccccccCCCCcHHHHHHHHHH--HHhhchHHHHHHHhcCcEEEEeC-CCCcccHHHHHHHHhcc
Q 023080          215 CMSKLITRADDTEEVVKERLRV--YNEKSQPVEEFYRNRGKLLEFDL-PGGIPESWPKLLEALNL  276 (287)
Q Consensus       215 ~~~~L~~r~~d~~~~i~~rl~~--y~~~~~~~~~~y~~~~~~~~id~-~~~~eev~~~I~~~l~~  276 (287)
                                   +.+.+-++.  .--......+.+   ..++.||. +.+++++.+.|..+++.
T Consensus       108 -------------eKI~ENveAEi~~vi~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         108 -------------EKILENVEAEILDVILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHcc
Confidence                         222222111  111111222233   45788885 57999999999999984

>PRK06762 hypothetical protein; Provisional

Probab=99.52  E-value=4.9e-13  Score=109.68  Aligned_cols=157  Identities=18%  Similarity=0.200  Sum_probs=94.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      |++|+|+|+|||||||+|+.|++++  ++.+++.|.+ +..+.....         ..+. ...+.+.......+..   
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~-r~~l~~~~~---------~~~~-~~~~~~~~~~~~~~~~---   67 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV-RRDMLRVKD---------GPGN-LSIDLIEQLVRYGLGH---   67 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH-HHHhccccC---------CCCC-cCHHHHHHHHHHHHhC---
Confidence            5789999999999999999999999  5667777554 432221100         0011 1122222333332222   


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                        +..+|+|+..........+..    ...+..+|||++|.+++++|...|...                          
T Consensus        68 --g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~--------------------------  119 (166)
T PRK06762         68 --CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS--------------------------  119 (166)
T ss_pred             --CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc--------------------------
Confidence              357899987544433333332    233678999999999999999988421                          


Q ss_pred             CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                    . .-..+.++.+++..    ..+   + ..+ .+.++.+.+++++.++|...+..
T Consensus       120 --------------~-~~~~~~l~~~~~~~----~~~---~-~~~-~~~~~~~~~~~~v~~~i~~~~~~  164 (166)
T PRK06762        120 --------------H-EFGEDDMRRWWNPH----DTL---G-VIG-ETIFTDNLSLKDIFDAILTDIGL  164 (166)
T ss_pred             --------------c-cCCHHHHHHHHhhc----CCc---C-CCC-eEEecCCCCHHHHHHHHHHHhcc
Confidence                          0 11345555444332    211   1 122 35566678999999999988764

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.52  E-value=6.8e-13  Score=111.81  Aligned_cols=165  Identities=22%  Similarity=0.278  Sum_probs=107.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCc-----cc--------------
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL-----VS--------------  114 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-----~~--------------  114 (287)
                      ++.|.|+|.+||||||+++.+++ +|++++++|+++|+...++++....+.+.+.....     +.              
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            56899999999999999999999 99999999999999888877666666655542221     11              


Q ss_pred             ----HHHHHHHHHHHHH-hcccCCCccEEEeCCCCCHHHHHHHHHh-c--CccEEEEEecCHHHHHHHHhCCCccccCCC
Q 023080          115 ----DEIIFNLLSKRLE-AGQAGGESGFILDGFPRTVKQAEILEEV-M--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGG  186 (287)
Q Consensus       115 ----~~~~~~~l~~~l~-~~~~~~~~g~Ildg~p~~~~~~~~l~~~-~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~  186 (287)
                          ..+.+.++...+. ..... ..++++--.|       .|... +  .+|.||.+++|+++.++|+++|.       
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~-~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~-------  145 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGA-RSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD-------  145 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHh-hCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcC-------
Confidence                1222333333221 10111 1123332222       22222 2  27899999999999999999984       


Q ss_pred             ccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccH
Q 023080          187 NFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPES  266 (287)
Q Consensus       187 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev  266 (287)
                                                           ..+.+.+..++.......+    .+...+  +.++++++++.+
T Consensus       146 -------------------------------------~~~~e~~~~~~~~Q~~~~e----k~~~ad--~vi~n~~~i~~l  182 (201)
T COG0237         146 -------------------------------------GLDEEDAEARLASQRDLEE----KLALAD--VVIDNDGSIENL  182 (201)
T ss_pred             -------------------------------------CCCHHHHHHHHHhcCCHHH----HHhhcC--ChhhcCCCHHHH
Confidence                                                 3456666666655433322    233333  348888999999


Q ss_pred             HHHHHHHhccc
Q 023080          267 WPKLLEALNLD  277 (287)
Q Consensus       267 ~~~I~~~l~~~  277 (287)
                      .++|...+..-
T Consensus       183 ~~~i~~~~~~~  193 (201)
T COG0237         183 LEQIEKLLKEL  193 (201)
T ss_pred             HHHHHHHHHHH
Confidence            99888877643

>PLN02422 dephospho-CoA kinase

Probab=99.52  E-value=5.6e-13  Score=114.59  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH---------------
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD---------------  115 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~---------------  115 (287)
                      .|+|+|++||||||+++.|+ ++|++++++|++.++.+..++.....+.+.+....     .+..               
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~   81 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ   81 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            68999999999999999999 58999999999999998877766666665553211     1221               


Q ss_pred             ---HHHHHHHHHHHHh----cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          116 ---EIIFNLLSKRLEA----GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       116 ---~~~~~~l~~~l~~----~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                         ++++..+...+..    ....+...+|+| .|.-.+  ..+  ...+|.+|++++|.++.++|+..|+         
T Consensus        82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E--~~~--~~~~D~vI~V~a~~e~ri~RL~~R~---------  147 (232)
T PLN02422         82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE--TKM--DKWTKPVVVVWVDPETQLERLMARD---------  147 (232)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh--cch--hhhCCEEEEEECCHHHHHHHHHHcC---------
Confidence               2334444333321    111111345555 232211  001  1137999999999999999999984         


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP  268 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~  268 (287)
                                                         .-+.+.+.+|++....    ..+. ..... +.|+++++.+++..
T Consensus       148 -----------------------------------g~s~eea~~Ri~~Q~~----~eek-~~~AD-~VI~N~gs~e~L~~  186 (232)
T PLN02422        148 -----------------------------------GLSEEQARNRINAQMP----LDWK-RSKAD-IVIDNSGSLEDLKQ  186 (232)
T ss_pred             -----------------------------------CCCHHHHHHHHHHcCC----hhHH-HhhCC-EEEECCCCHHHHHH
Confidence                                               2245666666644322    1112 22233 46888889999999


Q ss_pred             HHHHHhcc
Q 023080          269 KLLEALNL  276 (287)
Q Consensus       269 ~I~~~l~~  276 (287)
                      ++.+.++.
T Consensus       187 qv~~ll~~  194 (232)
T PLN02422        187 QFQKVLEK  194 (232)
T ss_pred             HHHHHHHH
Confidence            99888754

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.51  E-value=4.6e-13  Score=113.18  Aligned_cols=172  Identities=14%  Similarity=0.108  Sum_probs=107.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC----Cccc--------------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG----KLVS--------------  114 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g----~~~~--------------  114 (287)
                      .|+.|+|+|++||||||+++.|++.+|+++++.|.+.++.+.. +.....+.+.+..+    ..+.              
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~   83 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA   83 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence            4578999999999999999999999999999999999887654 33333344333221    1111              


Q ss_pred             ----HHHHHHHHHHHHHhcccC-CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080          115 ----DEIIFNLLSKRLEAGQAG-GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN  189 (287)
Q Consensus       115 ----~~~~~~~l~~~l~~~~~~-~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~  189 (287)
                          ..+++..+...+...-.. ....+|+|. |.-.+.  .+.....+|.+|++.+|.++.++|++.|.          
T Consensus        84 ~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~--~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd----------  150 (204)
T PRK14733         84 KKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPY--NFRHYDYLKKVIVIKADLETRIRRLMERD----------  150 (204)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhc--cCchhhhCCEEEEEECCHHHHHHHHHHcC----------
Confidence                123344444333221111 123455663 222110  00001137899999999999999999874          


Q ss_pred             cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC-CcccHHH
Q 023080          190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWP  268 (287)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~-~~eev~~  268 (287)
                                                        .-+.+.+..|++....    ..+.-...+  ++|++++ +.+++..
T Consensus       151 ----------------------------------~~s~~~a~~ri~~Q~~----~eek~~~aD--~VI~N~g~~~~~l~~  190 (204)
T PRK14733        151 ----------------------------------GKNRQQAVAFINLQIS----DKEREKIAD--FVIDNTELTDQELES  190 (204)
T ss_pred             ----------------------------------CCCHHHHHHHHHhCCC----HHHHHHhCC--EEEECcCCCHHHHHH
Confidence                                              2245666666655422    222222233  4588888 9999999


Q ss_pred             HHHHHhccch
Q 023080          269 KLLEALNLDE  278 (287)
Q Consensus       269 ~I~~~l~~~~  278 (287)
                      ++.+.++.+.
T Consensus       191 ~~~~~~~~~~  200 (204)
T PRK14733        191 KLITTINEIT  200 (204)
T ss_pred             HHHHHHHHHH
Confidence            9999888763

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.51  E-value=4.9e-13  Score=104.96  Aligned_cols=109  Identities=27%  Similarity=0.334  Sum_probs=77.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ..+.|+|+|-||+||||+|++||+.+|+.+|.+++++++.--     .....+-.+ --.+.++.+...+...+..+   
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~y~-c~i~DEdkv~D~Le~~m~~G---   76 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEEYK-CHILDEDKVLDELEPLMIEG---   76 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhccccccc-CccccHHHHHHHHHHHHhcC---
Confidence            456799999999999999999999999999999999987211     110000000 12345566777777777663   


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                         |.|+|-.....      ..-.++|+||.|.+|.+++.+||..|+
T Consensus        77 ---g~IVDyHgCd~------FperwfdlVvVLr~~~s~LY~RL~sRg  114 (176)
T KOG3347|consen   77 ---GNIVDYHGCDF------FPERWFDLVVVLRTPNSVLYDRLKSRG  114 (176)
T ss_pred             ---CcEEeecccCc------cchhheeEEEEEecCchHHHHHHHHcC
Confidence               88888322110      000147899999999999999999886

>TIGR00152 dephospho-CoA kinase

Probab=99.49  E-value=7.4e-13  Score=110.98  Aligned_cols=160  Identities=20%  Similarity=0.224  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-----CCcccH---------------
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-----GKLVSD---------------  115 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-----g~~~~~---------------  115 (287)
                      +|+|+|.+||||||+++.|++..|++++++|++.++.+..+......+.+.+..     ...+..               
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            488999999999999999999878999999999999888777666655554431     111111               


Q ss_pred             ---HHHHHHH----HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          116 ---EIIFNLL----SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       116 ---~~~~~~l----~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                         .+++..+    .+.+...... +..+|++ .|...+.  .+.  ..+|.+|+++++.+++++|+..|.         
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~-~~~vvi~-~pll~e~--~~~--~~~D~vv~V~~~~~~~~~Rl~~R~---------  145 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSK-LAYVLLD-VPLLFEN--KLR--SLCDRVIVVDVSPQLQLERLMQRD---------  145 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcC-CCEEEEE-chHhhhC--CcH--HhCCEEEEEECCHHHHHHHHHHcC---------
Confidence               1122222    2222222111 1234444 3333211  111  137899999999999999999884         


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP  268 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~  268 (287)
                                                         ..+.+.+.+|++.+..    ..+.-...+  +.|+++++++++..
T Consensus       146 -----------------------------------~~s~~~~~~r~~~q~~----~~~~~~~ad--~vI~N~~~~e~l~~  184 (188)
T TIGR00152       146 -----------------------------------NLTEEEVQKRLASQMD----IEERLARAD--DVIDNSATLADLVK  184 (188)
T ss_pred             -----------------------------------CCCHHHHHHHHHhcCC----HHHHHHhCC--EEEECCCCHHHHHH
Confidence                                               2345667777766522    122212222  45788889999988


Q ss_pred             HHH
Q 023080          269 KLL  271 (287)
Q Consensus       269 ~I~  271 (287)
                      ++.
T Consensus       185 ~~~  187 (188)
T TIGR00152       185 QLE  187 (188)
T ss_pred             HHh
Confidence            875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.49  E-value=7.7e-13  Score=119.29  Aligned_cols=115  Identities=20%  Similarity=0.254  Sum_probs=71.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      ..++..|+|+|+|||||||+++.|++++|++++++|..+.+.      .|..+.+++. .|.....+.....+...+...
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~------~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~  203 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE------AGLSVSEIFALYGQEGYRRLERRALERLIAEH  203 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhC
Confidence            346678999999999999999999999999999998877663      1222333332 232222233333444433322


Q ss_pred             ccCCCccEEEe-CC--CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          130 QAGGESGFILD-GF--PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       130 ~~~~~~g~Ild-g~--p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                           ..+|+. |.  +........+   ....++|||++|.+++++|+.+|.
T Consensus       204 -----~~~VI~~Ggg~v~~~~~~~~l---~~~~~~V~L~a~~e~~~~Rl~~r~  248 (309)
T PRK08154        204 -----EEMVLATGGGIVSEPATFDLL---LSHCYTVWLKASPEEHMARVRAQG  248 (309)
T ss_pred             -----CCEEEECCCchhCCHHHHHHH---HhCCEEEEEECCHHHHHHHHhcCC
Confidence                 234443 32  2222222222   224579999999999999998864

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.48  E-value=1.7e-12  Score=112.59  Aligned_cols=168  Identities=14%  Similarity=0.100  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-----CCcccH--------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-----GKLVSD--------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-----g~~~~~--------------  115 (287)
                      ++|.|+|.+||||||+++.|++++|+++|+.|.+.++...+++.....+.+.|..     +..+..              
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            5799999999999999999999999999999999999888777665666554422     112221              


Q ss_pred             ----HHHHHHHHHHHHhcc-------------cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          116 ----EIIFNLLSKRLEAGQ-------------AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       116 ----~~~~~~l~~~l~~~~-------------~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                          .+++..+...+....             ..+...+|+|. |.-.+. . +. ...+|.+|++++|.++.++|+..|
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL~E~-~-~~-~~~~D~iv~V~a~~e~ri~RL~~R  157 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTLFET-K-TF-TYFVSASVVVSCSEERQIERLRKR  157 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chhhcc-C-ch-hhcCCeEEEEECCHHHHHHHHHHc
Confidence                122233222221100             01012466663 221110 0 00 013699999999999999999987


Q ss_pred             CccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEe
Q 023080          179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD  258 (287)
Q Consensus       179 ~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id  258 (287)
                      +                                            ..+.+.+++|++....    ..+ ...... +.|+
T Consensus       158 ~--------------------------------------------g~s~eea~~Ri~~Q~~----~~e-k~~~aD-~VI~  187 (244)
T PTZ00451        158 N--------------------------------------------GFSKEEALQRIGSQMP----LEE-KRRLAD-YIIE  187 (244)
T ss_pred             C--------------------------------------------CCCHHHHHHHHHhCCC----HHH-HHHhCC-EEEE
Confidence            4                                            2345777777765221    222 222333 3466


Q ss_pred             CC--CCcccHHHHHHHHhcc
Q 023080          259 LP--GGIPESWPKLLEALNL  276 (287)
Q Consensus       259 ~~--~~~eev~~~I~~~l~~  276 (287)
                      ++  ++++++..+|.+.+..
T Consensus       188 N~~~g~~~~L~~~v~~~~~~  207 (244)
T PTZ00451        188 NDSADDLDELRGSVCDCVAW  207 (244)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            77  8999999999988753

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.48  E-value=1.2e-12  Score=109.47  Aligned_cols=165  Identities=15%  Similarity=0.126  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH-----cCCchHHHHHHHHhcCCcccHHHH-------HHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-----SSGSLSQQLSEIVNQGKLVSDEII-------FNLL  122 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~-----~~~~~~~~i~~~l~~g~~~~~~~~-------~~~l  122 (287)
                      .+|+|+||+||||||++++|+..++..++..+..+.....     ......+.....++++.+......       ...+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~   82 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI   82 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence            4789999999999999999999887655554433322100     111223344444444433211100       0113


Q ss_pred             HHHHHhcccCCCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCC
Q 023080          123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGN  201 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~  201 (287)
                      ...+..     +..+|++|.   ......+.. ...+-.+|+|++|.+++.+|+..|.                      
T Consensus        83 ~~~l~~-----g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~----------------------  132 (186)
T PRK10078         83 DLWLHA-----GFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRG----------------------  132 (186)
T ss_pred             HHHHhC-----CCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC----------------------
Confidence            333333     356888875   211122222 3345578999999999999998763                      


Q ss_pred             CCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhh
Q 023080          202 PSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYE  280 (287)
Q Consensus       202 ~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~  280 (287)
                                            ..+.+.++.|++.+.        +|.. ...+.+|+++++++++++|...|.....+
T Consensus       133 ----------------------~~~~~~i~~rl~r~~--------~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~~~~~  180 (186)
T PRK10078        133 ----------------------RENASEINARLARAA--------RYQP-QDCHTLNNDGSLRQSVDTLLTLLHLSQKE  180 (186)
T ss_pred             ----------------------CCCHHHHHHHHHHhh--------hhcc-CCEEEEeCCCCHHHHHHHHHHHHhhcCcc
Confidence                                  223455777775431        2322 34567888889999999999999866533

>PRK13976 thymidylate kinase; Provisional

Probab=99.48  E-value=1.7e-12  Score=110.44  Aligned_cols=173  Identities=14%  Similarity=0.067  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcC-CcccHHHHHHHHHHHHHh---
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQG-KLVSDEIIFNLLSKRLEA---  128 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g-~~~~~~~~~~~l~~~l~~---  128 (287)
                      ++|+|.|+.||||||+++.|++.|.-.  ...+ .+.+  .+.++.+++.+++++... ..-+.....-.+..+..+   
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v-~~~~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~   77 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV-VLTR--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK   77 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce-EEee--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999988431  1111 0111  134556777777776531 121211111111111111   


Q ss_pred             ---cccCCCccEEEeCCCC------------CHHHHHHHHHh---cCccEEEEEecCHHHHHHHHhCCCccccCCCcccc
Q 023080          129 ---GQAGGESGFILDGFPR------------TVKQAEILEEV---MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNV  190 (287)
Q Consensus       129 ---~~~~~~~g~Ildg~p~------------~~~~~~~l~~~---~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~  190 (287)
                         +....+..+|.|-|..            ..++...+...   ..||++|||++|++++++|+..++..         
T Consensus        78 ~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e---------  148 (209)
T PRK13976         78 VILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE---------  148 (209)
T ss_pred             HHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh---------
Confidence               1111145677775432            22233334332   25999999999999999999654311         


Q ss_pred             ccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeC---CCC---cc
Q 023080          191 ANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDL---PGG---IP  264 (287)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~---~~~---~e  264 (287)
                                                       ....+.+++-.+.|.+...    .+  ...++.+|+   .++   ++
T Consensus       149 ---------------------------------~~~~~~l~~v~~~Y~~l~~----~~--~~~~~~id~~~~~~~~~~~e  189 (209)
T PRK13976        149 ---------------------------------FMDLEFYDKVRKGFREIVI----KN--PHRCHVITCIDAKDNIEDIN  189 (209)
T ss_pred             ---------------------------------cccHHHHHHHHHHHHHHHH----hC--CCCeEEEECCCCccCcCCHH
Confidence                                             1234455444445544321    11  234677887   345   99


Q ss_pred             cHHHHHHHHhccch
Q 023080          265 ESWPKLLEALNLDE  278 (287)
Q Consensus       265 ev~~~I~~~l~~~~  278 (287)
                      +|.++|.+.|....
T Consensus       190 ~v~~~i~~~i~~~~  203 (209)
T PRK13976        190 SVHLEIVKLLHAVT  203 (209)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887655

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.47  E-value=2e-12  Score=105.40  Aligned_cols=103  Identities=29%  Similarity=0.339  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCCCccEEEeC
Q 023080           63 PGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGGESGFILDG  141 (287)
Q Consensus        63 pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg  141 (287)
                      |||||||+++.||+.+|++++++|+++.+      ..+..+.+++.. |.....+....++.+.+..     ...+|..|
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~------~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~-----~~~VIa~G   69 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE------RTGMSISEIFAEEGEEAFRELESEALRELLKE-----NNCVIACG   69 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHH------HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSEEEEE-
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHH------HhCCcHHHHHHcCChHHHHHHHHHHHHHHhcc-----CcEEEeCC
Confidence            79999999999999999999999999877      344556666643 3222223333444333332     23444443


Q ss_pred             --CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          142 --FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       142 --~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                        .+......+.+...   ..+|||+.+++++.+|+..+.
T Consensus        70 GG~~~~~~~~~~L~~~---g~vI~L~~~~~~l~~Rl~~~~  106 (158)
T PF01202_consen   70 GGIVLKEENRELLKEN---GLVIYLDADPEELAERLRARD  106 (158)
T ss_dssp             TTGGGSHHHHHHHHHH---SEEEEEE--HHHHHHHHHHHC
T ss_pred             CCCcCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHhCCC
Confidence              56666666666643   379999999999999997754

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK07933 thymidylate kinase; Validated

Probab=99.47  E-value=6.9e-13  Score=113.34  Aligned_cols=173  Identities=18%  Similarity=0.088  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcC--Cc-c-cHHHHH--------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQG--KL-V-SDEIIF--------  119 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g--~~-~-~~~~~~--------  119 (287)
                      |+|+|.|+.||||||+++.|++++.   ..++-+    ++....+++.+..+++.+...  .. . +.....        
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~   76 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG   76 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence            5799999999999999999999984   333322    110002344555666655431  11 0 111110        


Q ss_pred             --HHHHHHHHhcccCCCccEEEeCCCCCH-----------------HHHHHHHH----hcCccEEEEEecCHHHHHHHHh
Q 023080          120 --NLLSKRLEAGQAGGESGFILDGFPRTV-----------------KQAEILEE----VMDIDLVVNLKLCEDVLLEKCL  176 (287)
Q Consensus       120 --~~l~~~l~~~~~~~~~g~Ildg~p~~~-----------------~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~  176 (287)
                        ..+...+..     +..+|+|.|..+.                 .+...++.    ...||++|||++++++.++|+.
T Consensus        77 ~~~~I~p~l~~-----g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~  151 (213)
T PRK07933         77 ARDELAGLLAA-----HDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR  151 (213)
T ss_pred             hHHHHHHHHhC-----CCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence              112222221     3567888643221                 11222322    1259999999999999999998


Q ss_pred             CCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEE
Q 023080          177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLE  256 (287)
Q Consensus       177 ~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~  256 (287)
                      +|+... .+.  ..                              .+-+...+.+++-.+.|.+...    .+ ....++.
T Consensus       152 ~R~~~~-~~~--~~------------------------------d~~E~~~~f~~~v~~~Y~~~~~----~~-~~~~~~~  193 (213)
T PRK07933        152 RRAAQD-ADR--AR------------------------------DAYERDDGLQQRTGAVYAELAA----QG-WGGPWLV  193 (213)
T ss_pred             hhcccc-CCc--cc------------------------------ccccccHHHHHHHHHHHHHHHH----hc-CCCCeEE
Confidence            874210 000  00                              0001122334333344443221    11 1346888


Q ss_pred             EeCCCCcccHHHHHHHHh
Q 023080          257 FDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       257 id~~~~~eev~~~I~~~l  274 (287)
                      ||+++++++|.++|.+.|
T Consensus       194 ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        194 VDPDVDPAALAARLAAAL  211 (213)
T ss_pred             eCCCCCHHHHHHHHHHHh
Confidence            999999999999998776

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.46  E-value=3.8e-12  Score=102.76  Aligned_cols=109  Identities=22%  Similarity=0.283  Sum_probs=66.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCcc
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESG  136 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~g  136 (287)
                      |+|+|+|||||||+++.|++.+|+.+++.|+++......  ...    +++...   ..+.+.....+.+.....  ..+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~----~~~~~~---~~~~~~~~e~~~~~~~~~--~~~   70 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIP----EIFAEE---GEEGFRELEREVLLLLLT--KEN   70 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHH----HHHHHH---CHHHHHHHHHHHHHHHhc--cCC
Confidence            789999999999999999999999999999887764321  122    222110   112222221111221111  134


Q ss_pred             EEEeC---CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          137 FILDG---FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       137 ~Ildg---~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      +|+++   +......   ...+.....+|||++|.+++.+|+..|.
T Consensus        71 ~vi~~g~~~i~~~~~---~~~~~~~~~~i~l~~~~e~~~~R~~~r~  113 (154)
T cd00464          71 AVIATGGGAVLREEN---RRLLLENGIVVWLDASPEELLERLARDK  113 (154)
T ss_pred             cEEECCCCccCcHHH---HHHHHcCCeEEEEeCCHHHHHHHhccCC
Confidence            55552   2223222   2222345689999999999999998864

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=2.6e-12  Score=100.94  Aligned_cols=155  Identities=20%  Similarity=0.230  Sum_probs=100.6

Q ss_pred             EcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH---HHHHHHHHHHhcccCCCcc
Q 023080           60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI---IFNLLSKRLEAGQAGGESG  136 (287)
Q Consensus        60 ~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~---~~~~l~~~l~~~~~~~~~g  136 (287)
                      +|.+||||||+++.||+++|+.+|+-|++--         ...|.+ +..|.++.|+-   +...+..++......+..+
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp---------~aNi~K-M~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHP---------PANIEK-MSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCC---------HHHHHH-HhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence            5999999999999999999999999988732         123333 57788887765   3344445554433331224


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCcc-EEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCccc
Q 023080          137 FILDGFPRTVKQAEILEEVMDID-LVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC  215 (287)
Q Consensus       137 ~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~  215 (287)
                      +|.+. -.-......|. -..|+ .+|||+.+.+++++|+..|.-                       .|||+       
T Consensus        71 vi~CS-ALKr~YRD~LR-~~~~~~~Fv~L~g~~~~i~~Rm~~R~g-----------------------HFM~~-------  118 (161)
T COG3265          71 VIACS-ALKRSYRDLLR-EANPGLRFVYLDGDFDLILERMKARKG-----------------------HFMPA-------  118 (161)
T ss_pred             EEecH-HHHHHHHHHHh-ccCCCeEEEEecCCHHHHHHHHHhccc-----------------------CCCCH-------
Confidence            44432 22222223332 23355 468999999999999999963                       46653       


Q ss_pred             ccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          216 MSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       216 ~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                  ..++.+++..+.   |     .....++.||.+.+++++.+++.+.|..
T Consensus       119 ------------~ll~SQfa~LE~---P-----~~de~vi~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         119 ------------SLLDSQFATLEE---P-----GADEDVLTIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             ------------HHHHHHHHHhcC---C-----CCCCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence                        444443333322   1     1112589999999999999999988864

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.45  E-value=7e-13  Score=110.83  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHH------------HHHHHHH
Q 023080           59 FLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF------------NLLSKRL  126 (287)
Q Consensus        59 i~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~------------~~l~~~l  126 (287)
                      |.|+.||||||+++.|++++....+.+   +.......++.|..+++++..+...+.....            ..+...+
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l   77 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL   77 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999984333210   0000123456677777777733333332211            1122222


Q ss_pred             HhcccCCCccEEEeCC----------CC--CHHHHHHHH-Hhc--CccEEEEEecCHHHHHHHHhCCC
Q 023080          127 EAGQAGGESGFILDGF----------PR--TVKQAEILE-EVM--DIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~----------p~--~~~~~~~l~-~~~--~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..     +..+|+|-|          ..  .......+. ...  .||++|||++++++..+|+..|.
T Consensus        78 ~~-----g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~  140 (186)
T PF02223_consen   78 KR-----GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRG  140 (186)
T ss_dssp             HT-----TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTS
T ss_pred             cC-----CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCC
Confidence            22     467888832          11  123333333 233  79999999999999999999986

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.44  E-value=8.5e-13  Score=105.24  Aligned_cols=113  Identities=25%  Similarity=0.261  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch---HHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL---SQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~---~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      +|+|+|+|||||||+++.|++.++..+++.|++.........+.   ........       .+.+...+...+..    
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~----   69 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALRN----   69 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHHT----
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHHc----
Confidence            47899999999999999999999999999977665432211110   00011100       12233344444444    


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCc
Q 023080          133 GESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                       +..+|+|+......+...+....    .+..+|+|+++.+++.+|+..|..
T Consensus        70 -g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~  120 (143)
T PF13671_consen   70 -GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR  120 (143)
T ss_dssp             -T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred             -CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence             36799997666655555544432    255789999999999999999863

...

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.43  E-value=1.8e-12  Score=107.78  Aligned_cols=118  Identities=25%  Similarity=0.320  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----ccc----------------
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVS----------------  114 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~----------------  114 (287)
                      +|+|+|++||||||+++.|++ +|++++++|++.++.+..+......+.+.+..+.     .+.                
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            488999999999999999999 9999999999999988877777777777664322     111                


Q ss_pred             --HHHHHHHHHHHHHhcc--cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          115 --DEIIFNLLSKRLEAGQ--AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       115 --~~~~~~~l~~~l~~~~--~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                        ..+++..+...+...-  .....-+|+|+ |.-.+.  .+.  ..+|.+|++++|.++.++|+..|.
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~--~~~--~~~D~vv~V~a~~~~ri~Rl~~Rd  143 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFET--GLE--KLVDRVIVVDAPPEIQIERLMKRD  143 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcC--CcH--HhCCeEEEEECCHHHHHHHHHHcC
Confidence              2334444444433211  11012355553 222111  011  137899999999999999999884

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=2.6e-12  Score=101.44  Aligned_cols=163  Identities=20%  Similarity=0.258  Sum_probs=105.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH---HHHHhc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS---KRLEAG  129 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~---~~l~~~  129 (287)
                      -+-.|+++|++||||||+++.|++++++.+++.||+--.          .-.+-+.+|..++|+--+..+.   ..+...
T Consensus        11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~~   80 (191)
T KOG3354|consen   11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRKA   80 (191)
T ss_pred             CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence            444789999999999999999999999999999887422          1223356677776654332222   222221


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhcC-------c---cEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVMD-------I---DLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGN  199 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~-------~---d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~  199 (287)
                      ... ++++|+...-.-......+.....       |   -.+|+|.++.+++.+|+..|.                    
T Consensus        81 l~~-~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~--------------------  139 (191)
T KOG3354|consen   81 LAS-GQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK--------------------  139 (191)
T ss_pred             hhc-CCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc--------------------
Confidence            122 578999865444444555554221       2   257899999999999999985                    


Q ss_pred             CCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhc
Q 023080          200 GNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALN  275 (287)
Q Consensus       200 ~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~  275 (287)
                         +.|||+                   +.++.+++..+.   |-    .+..+++.|+.. .++|+++..|.+.+.
T Consensus       140 ---gHFMp~-------------------~lleSQf~~LE~---p~----~~e~div~isv~~~~~e~iv~tI~k~~~  187 (191)
T KOG3354|consen  140 ---GHFMPA-------------------DLLESQFATLEA---PD----ADEEDIVTISVKTYSVEEIVDTIVKMVA  187 (191)
T ss_pred             ---cccCCH-------------------HHHHHHHHhccC---CC----CCccceEEEeeccCCHHHHHHHHHHHHH
Confidence               346653                   344433333221   11    112257888877 899999988877664

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.42  E-value=6.6e-12  Score=105.82  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=75.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchH-HHHHHHHhcCCcccHHH--------------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLS-QQLSEIVNQGKLVSDEI--------------  117 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~-~~i~~~l~~g~~~~~~~--------------  117 (287)
                      .+++|+|.|+|||||||+|+.|++++|+.++..+|++|+.+......+ ......+..++.++++.              
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999887543322 11111111112222111              


Q ss_pred             ----HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEec-CHHHHHHHHhCCC
Q 023080          118 ----IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKL-CEDVLLEKCLGRR  179 (287)
Q Consensus       118 ----~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~-~~e~l~~Rl~~R~  179 (287)
                          +..++...+.+     +..+|+||.............. . ..++++.+ +++.+.+|+..|.
T Consensus        82 v~~~L~~va~~~l~~-----G~sVIvEgv~l~p~~~~~~~~~-~-v~~i~l~v~d~e~lr~Rl~~R~  141 (197)
T PRK12339         82 IMPGINRVIRRALLN-----GEDLVIESLYFHPPMIDENRTN-N-IRAFYLYIRDAELHRSRLADRI  141 (197)
T ss_pred             HHHHHHHHHHHHHHc-----CCCEEEEecCcCHHHHHHHHhc-C-eEEEEEEeCCHHHHHHHHHHHh
Confidence                11112222222     5789999976665544322211 1 24566665 6788889999885

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.41  E-value=9e-12  Score=105.03  Aligned_cols=163  Identities=16%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----Cccc-----------------
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVS-----------------  114 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~-----------------  114 (287)
                      |+|+|++||||||+++.|++ +|.++++.|++.+..+..++.....+.+.|..+     +.+.                 
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~   80 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA   80 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence            78999999999999999975 799999999999998877776656565544321     1111                 


Q ss_pred             -HHHHHHHHHHHHHhcc--cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080          115 -DEIIFNLLSKRLEAGQ--AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA  191 (287)
Q Consensus       115 -~~~~~~~l~~~l~~~~--~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~  191 (287)
                       .++++..+...+....  ...+..+|+| .|.-.+.  .+  ...+|.+|++++|.++.++|+..|.            
T Consensus        81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e-~pLL~E~--~~--~~~~D~vi~V~a~~e~r~~RL~~R~------------  143 (196)
T PRK14732         81 LNELIHPLVRKDFQKILQTTAEGKLVIWE-VPLLFET--DA--YTLCDATVTVDSDPEESILRTISRD------------  143 (196)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCcEEEE-eeeeeEc--Cc--hhhCCEEEEEECCHHHHHHHHHHcC------------
Confidence             1233444443332110  1101234444 3333220  00  1137999999999999999999884            


Q ss_pred             cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080          192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL  271 (287)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~  271 (287)
                                                      ..+.+.+..|+....    +..+.-...+  +.|+++++++++..++.
T Consensus       144 --------------------------------g~s~e~a~~ri~~Q~----~~~~k~~~aD--~vI~N~~~~~~l~~~v~  185 (196)
T PRK14732        144 --------------------------------GMKKEDVLARIASQL----PITEKLKRAD--YIVRNDGNREGLKEECK  185 (196)
T ss_pred             --------------------------------CCCHHHHHHHHHHcC----CHHHHHHhCC--EEEECCCCHHHHHHHHH
Confidence                                            224566777766521    3333333333  35778889999999999


Q ss_pred             HHhc
Q 023080          272 EALN  275 (287)
Q Consensus       272 ~~l~  275 (287)
                      +.++
T Consensus       186 ~l~~  189 (196)
T PRK14732        186 ILYS  189 (196)
T ss_pred             HHHH
Confidence            8775

>PRK07261 topology modulation protein; Provisional

Probab=99.41  E-value=8.4e-13  Score=109.02  Aligned_cols=101  Identities=21%  Similarity=0.271  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+|+.|++.+++++++.|.+....  .              ....+.+.....+...+.+      
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~------   58 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP--N--------------WQERDDDDMIADISNFLLK------   58 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc--c--------------cccCCHHHHHHHHHHHHhC------
Confidence            47999999999999999999999999999997764320  0              0112233344445554443      


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                      ..||+||..........+.   ..|.+|+|++|..+++.|+.+|.+
T Consensus        59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~lkR~~  101 (171)
T PRK07261         59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRAFKRYL  101 (171)
T ss_pred             CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHHHHHHH
Confidence            3599999876644333343   468999999999999999998864

>smart00072 GuKc Guanylate kinase homologues

Probab=99.40  E-value=7.4e-13  Score=110.62  Aligned_cols=164  Identities=20%  Similarity=0.186  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC----CCeeehhHHHHHHHHcCCc----hHHHHHHHHhcCCcccHHHH--------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG----VPHIATGDLVREELASSGS----LSQQLSEIVNQGKLVSDEII--------  118 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg----~~~i~~d~llr~~~~~~~~----~~~~i~~~l~~g~~~~~~~~--------  118 (287)
                      ..|+|+||+||||+|+++.|.+.+.    ..+..+....|.....+..    ..+.+...+.+|.+++....        
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~   82 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS   82 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence            4689999999999999999998852    2333332222221111222    23677778888877654332        


Q ss_pred             HHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEe-cCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080          119 FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLK-LCEDVLLEKCLGRRMCSQCGGNFNVANINVKG  197 (287)
Q Consensus       119 ~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~  197 (287)
                      ...+...+..     ++.+|+|+.|....+....   ....++|||. .+.+.+.+|+.+|.                  
T Consensus        83 ~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~---~~~~~vIfi~~~s~~~l~~rl~~R~------------------  136 (184)
T smart00072       83 KETIRQVAEQ-----GKHCLLDIDPQGVKQLRKA---QLYPIVIFIAPPSSEELERRLRGRG------------------  136 (184)
T ss_pred             HHHHHHHHHc-----CCeEEEEECHHHHHHHHHh---CCCcEEEEEeCcCHHHHHHHHHhcC------------------
Confidence            2345555544     4789999987776655433   2223788997 55667999998764                  


Q ss_pred             CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                                +++.+.+++|+....+...    .+...+  ..|.++ +.++.+.++..+|...
T Consensus       137 --------------------------~~~~~~i~~rl~~a~~~~~----~~~~fd--~~I~n~-~l~~~~~~l~~~i~~~  183 (184)
T smart00072      137 --------------------------TETAERIQKRLAAAQKEAQ----EYHLFD--YVIVND-DLEDAYEELKEILEAE  183 (184)
T ss_pred             --------------------------CCCHHHHHHHHHHHHHHHh----hhccCC--EEEECc-CHHHHHHHHHHHHHhc
Confidence                                      5677889999987655432    232222  334444 7999999999988653

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.40  E-value=1.6e-12  Score=108.03  Aligned_cols=117  Identities=21%  Similarity=0.271  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH--------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD--------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~--------------  115 (287)
                      |+|.|+|..||||||+++.|++ +|+++++.|.+.++.+..+++....+.+.+...-     .+..              
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5799999999999999999998 9999999999999988877777777766654322     1221              


Q ss_pred             ----HHHHHHHHHHHHh----cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          116 ----EIIFNLLSKRLEA----GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       116 ----~~~~~~l~~~l~~----~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                          .+++.++...+..    ...  ..-+|+|. |.-.+.  .+  ...+|.+|++.+|.++.++|++.|+
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~--~~~~v~e~-pLL~E~--~~--~~~~D~vi~V~a~~e~ri~Rl~~R~  144 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKS--EKVVVVEI-PLLFES--GL--EKLCDEVIVVYAPEEIRIKRLMERD  144 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHS--TSEEEEE--TTTTTT--TG--GGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccC--CCEEEEEc-chhhhh--hH--hhhhceEEEEECCHHHHHHHHHhhC
Confidence                2344444433332    211  13556663 322110  01  1238999999999999999999874

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.40  E-value=2e-11  Score=104.84  Aligned_cols=124  Identities=18%  Similarity=0.185  Sum_probs=66.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH--HHHHHHcCCchHH------HHHHHHhcCC---cccHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL--VREELASSGSLSQ------QLSEIVNQGK---LVSDEIIFNLLSK  124 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l--lr~~~~~~~~~~~------~i~~~l~~g~---~~~~~~~~~~l~~  124 (287)
                      +|+|.|..||||||+++.|+++++..++.....  .......++.++.      .++.+.....   .........++..
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            489999999999999999999998765533211  1000011112221      1333333211   1111211122222


Q ss_pred             HHHh------cccCCCccEEEeCCCCCH------------------HHHHHHHH-----hcCccEEEEEecCHHHHHHHH
Q 023080          125 RLEA------GQAGGESGFILDGFPRTV------------------KQAEILEE-----VMDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       125 ~l~~------~~~~~~~g~Ildg~p~~~------------------~~~~~l~~-----~~~~d~vi~L~~~~e~l~~Rl  175 (287)
                      +..+      .....+..+|+|.++-+.                  .....+..     ...||++|||++|++++.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence            2221      011114678999753210                  11111111     135999999999999999999


Q ss_pred             hCCC
Q 023080          176 LGRR  179 (287)
Q Consensus       176 ~~R~  179 (287)
                      .+|+
T Consensus       161 ~~R~  164 (219)
T cd02030         161 KKRG  164 (219)
T ss_pred             HHcC
Confidence            8875

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.39  E-value=1.8e-12  Score=110.25  Aligned_cols=169  Identities=14%  Similarity=0.126  Sum_probs=100.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH---HHcCCc----hHHHHHHHHhcCCcccHHH------
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE---LASSGS----LSQQLSEIVNQGKLVSDEI------  117 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~---~~~~~~----~~~~i~~~l~~g~~~~~~~------  117 (287)
                      +.++.+|+|+||+||||||+++.|.+......+......|..   ...+..    ....+...+.+|.++....      
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y   89 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY   89 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence            447889999999999999999999865311111111111110   000000    1234445555555543211      


Q ss_pred             --HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC--HHHHHHHHhCCCccccCCCccccccc
Q 023080          118 --IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC--EDVLLEKCLGRRMCSQCGGNFNVANI  193 (287)
Q Consensus       118 --~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~--~e~l~~Rl~~R~~~~~~g~~y~~~~~  193 (287)
                        -...+...+..     +..+|+|.-+.   .+..+... .||+++++.+|  .+++.+|+..|.              
T Consensus        90 Gt~~~~i~~~~~~-----g~~vi~~~~~~---g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~--------------  146 (206)
T PRK14738         90 GVPKAPVRQALAS-----GRDVIVKVDVQ---GAASIKRL-VPEAVFIFLAPPSMDELTRRLELRR--------------  146 (206)
T ss_pred             cCCHHHHHHHHHc-----CCcEEEEcCHH---HHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcC--------------
Confidence              11234444444     35678876443   33444443 37877666654  568899998874              


Q ss_pred             cccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHH
Q 023080          194 NVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEA  273 (287)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~  273 (287)
                                                    +++.+.+.+|+..++......     ....++.||++.++++++++|.+.
T Consensus       147 ------------------------------~~~~~~~~~Rl~~~~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~  191 (206)
T PRK14738        147 ------------------------------TESPEELERRLATAPLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAI  191 (206)
T ss_pred             ------------------------------CCCHHHHHHHHHHHHHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHH
Confidence                                          345677888888776543321     122578899999999999999999


Q ss_pred             hccc
Q 023080          274 LNLD  277 (287)
Q Consensus       274 l~~~  277 (287)
                      |...
T Consensus       192 l~~~  195 (206)
T PRK14738        192 ISAE  195 (206)
T ss_pred             HHHH
Confidence            9765

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.38  E-value=1.9e-11  Score=101.47  Aligned_cols=163  Identities=20%  Similarity=0.198  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCc----hHHHHHHHHhcCCcccH-H------HHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGS----LSQQLSEIVNQGKLVSD-E------IIFN  120 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~----~~~~i~~~l~~g~~~~~-~------~~~~  120 (287)
                      .+|+|+|++||||||+++.|+..++..   .+....+.+.....+..    ....+......+.+... +      -...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            368999999999999999999987542   11111111110001100    11223333333322110 0      0111


Q ss_pred             HHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCC
Q 023080          121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNG  200 (287)
Q Consensus       121 ~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~  200 (287)
                      .+...+..     +..+|+||...   ....+........+|||+++.+++.+|+..|.                     
T Consensus        82 ~i~~~~~~-----g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~---------------------  132 (179)
T TIGR02322        82 EIDQWLEA-----GDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARG---------------------  132 (179)
T ss_pred             HHHHHHhc-----CCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC---------------------
Confidence            22233332     45788988632   12222222234478999999999999999873                     


Q ss_pred             CCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          201 NPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       201 ~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                             ....+.+.+|+..+.....       ....++.++++++++++..+|.+.|..
T Consensus       133 -----------------------~~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       133 -----------------------RESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             -----------------------CCCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence                                   1224566667654432211       223466688888999999999998864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.37  E-value=6.6e-12  Score=103.39  Aligned_cols=168  Identities=20%  Similarity=0.239  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCccc-----HHH------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS-----DEI------------  117 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~-----~~~------------  117 (287)
                      .+|.++|..||||||+++.+. .+|+++|++|.+.|+...++++....+.+.|......+     .+.            
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            467899999999999999997 79999999999999999999999998888776543322     211            


Q ss_pred             ------HHHHHH----HHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080          118 ------IFNLLS----KRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN  187 (287)
Q Consensus       118 ------~~~~l~----~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~  187 (287)
                            ++..+.    +.+...-..+.+-+|+| .|.-.+-  .+..  .+..+|.+.|+.++.++|+..|.        
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd--------  147 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK--ICHKTVVVTCDEELQLERLVERD--------  147 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh--heeeEEEEEECcHHHHHHHHHhc--------
Confidence                  111121    11111122223445665 3333221  1222  24567888899999999999873        


Q ss_pred             cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080          188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW  267 (287)
Q Consensus       188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~  267 (287)
                                                          .-+++..+.|++...    |+.+.-....  +++|+++++++..
T Consensus       148 ------------------------------------~lse~dAe~Rl~sQm----p~~~k~~~a~--~Vi~Nng~~~~l~  185 (225)
T KOG3220|consen  148 ------------------------------------ELSEEDAENRLQSQM----PLEKKCELAD--VVIDNNGSLEDLY  185 (225)
T ss_pred             ------------------------------------cccHHHHHHHHHhcC----CHHHHHHhhh--eeecCCCChHHHH
Confidence                                                346677777777653    3333333333  5699999999999


Q ss_pred             HHHHHHhccch
Q 023080          268 PKLLEALNLDE  278 (287)
Q Consensus       268 ~~I~~~l~~~~  278 (287)
                      ++|..++....
T Consensus       186 ~qv~~v~~~~~  196 (225)
T KOG3220|consen  186 EQVEKVLALLQ  196 (225)
T ss_pred             HHHHHHHHHhc
Confidence            99988877543

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.35  E-value=2e-11  Score=99.95  Aligned_cols=164  Identities=16%  Similarity=0.169  Sum_probs=107.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCc--------hHHHHHHHHhcCCcccHHHH------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGS--------LSQQLSEIVNQGKLVSDEII------  118 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~--------~~~~i~~~l~~g~~~~~~~~------  118 (287)
                      +++.|+|+||+|+||||+.++|-+.. -..+|++...|.. ..+..        ....+.+++.+|+++....+      
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG   80 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG   80 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence            67889999999999999999999998 5667776776652 22211        34577888888877654322      


Q ss_pred             --HHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC-HHHHHHHHhCCCccccCCCccccccccc
Q 023080          119 --FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVANINV  195 (287)
Q Consensus       119 --~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~~~~  195 (287)
                        ...+...+..     +..+|+|--   ..-+.++....+.-..|||..| .+++.+|+.+|+                
T Consensus        81 T~~~~ve~~~~~-----G~~vildId---~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg----------------  136 (191)
T COG0194          81 TSREPVEQALAE-----GKDVILDID---VQGALQVKKKMPNAVSIFILPPSLEELERRLKGRG----------------  136 (191)
T ss_pred             CcHHHHHHHHhc-----CCeEEEEEe---hHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC----------------
Confidence              2333344443     467888732   2223444443333345666664 467888887764                


Q ss_pred             cCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          196 KGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       196 ~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                                  .|+++.+.+|+...+.....    +...+. +.+|  .+++..+.++..++.
T Consensus       137 ----------------------------tds~e~I~~Rl~~a~~Ei~~----~~~fdy-vivN--dd~e~a~~~l~~ii~  181 (191)
T COG0194         137 ----------------------------TDSEEVIARRLENAKKEISH----ADEFDY-VIVN--DDLEKALEELKSIIL  181 (191)
T ss_pred             ----------------------------CCCHHHHHHHHHHHHHHHHH----HHhCCE-EEEC--ccHHHHHHHHHHHHH
Confidence                                        78899999999999887653    333333 3343  367888888887776


Q ss_pred             cc
Q 023080          276 LD  277 (287)
Q Consensus       276 ~~  277 (287)
                      .+
T Consensus       182 ae  183 (191)
T COG0194         182 AE  183 (191)
T ss_pred             HH
Confidence            54

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.35  E-value=3.2e-11  Score=105.57  Aligned_cols=158  Identities=25%  Similarity=0.302  Sum_probs=92.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      .|+|+|+|||||||+|+.|++.++     +.+++. |.++..+...   .......+       .+....++...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~---~~~~e~~~-------~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVW---KEKYEEFI-------RDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHh---hHHhHHHH-------HHHHHHHHHHHHhC--
Confidence            388999999999999999999873     345555 5555433211   01111111       12233344444443  


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHH----HhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080          131 AGGESGFILDGFPRTVKQAEILE----EVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM  206 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~  206 (287)
                         +..+|+|+..........+.    ..+.+.++|||++|.+++++|...|..                          
T Consensus        68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~--------------------------  118 (249)
T TIGR03574        68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE--------------------------  118 (249)
T ss_pred             ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC--------------------------
Confidence               35689998654433333332    223466889999999999999987631                          


Q ss_pred             CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC--CcccHHHHHHHHhcc
Q 023080          207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG--GIPESWPKLLEALNL  276 (287)
Q Consensus       207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~--~~eev~~~I~~~l~~  276 (287)
                                       ....+.+...+..|..-   ... |.-....+.||++.  +++++++.|...+..
T Consensus       119 -----------------~~~~~~i~~l~~r~e~p---~~~-~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       119 -----------------KIPNEVIKDMYEKFDEP---GTK-YSWDLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             -----------------CCCHHHHHHHHHhhCCC---CCC-CCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence                             11244555544444322   111 11112457788775  568999999887654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.35  E-value=1.2e-11  Score=114.94  Aligned_cols=120  Identities=22%  Similarity=0.261  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccH--------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVSD--------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~--------------  115 (287)
                      +.|.|+|++||||||+++.|++ +|+++|++|.+.++.+..++..-..+.+.+..+     +.+..              
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4699999999999999999987 899999999999998877665544555444322     11211              


Q ss_pred             ----HHHHHHHHHHHHhcc-cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          116 ----EIIFNLLSKRLEAGQ-AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       116 ----~~~~~~l~~~l~~~~-~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                          .+++..+...+.+.. ..++..+|+.+.|.-.+.  .+  ...+|.+|++++|.++.++|+..|+
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~--~~~~D~iI~V~ap~e~ri~Rl~~rR  145 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GM--APLFHLVVVVDADVEVRVRRLVEQR  145 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cc--hhhCCEEEEEECCHHHHHHHHHhcC
Confidence                223333333332211 011245666665543221  01  1137899999999999999998853

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.33  E-value=5.8e-11  Score=98.34  Aligned_cols=122  Identities=15%  Similarity=0.145  Sum_probs=67.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHH-Hhc-CCcccHHH---HHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEI-VNQ-GKLVSDEI---IFNLLSKRL  126 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~-l~~-g~~~~~~~---~~~~l~~~l  126 (287)
                      +.+|+|.|+|||||||+++.|++.++..  +++.|++... +........  ..+ +.. +...+.+.   ....+...+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~   78 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDAE--GGIEFDGDGGVSPGPEFRLLEGAWYEAV   78 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhcccc--cccccCccCCcccchHHHHHHHHHHHHH
Confidence            3579999999999999999999998654  4577666543 211000000  000 000 01111111   122222222


Q ss_pred             HhcccCCCccEEEeCCCC-CHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhCCC
Q 023080          127 EAGQAGGESGFILDGFPR-TVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~p~-~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ...... +..+|+|.... .....+.+..... +-..|+|++|.+++.+|+.+|.
T Consensus        79 ~~~l~~-G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~  132 (175)
T cd00227          79 AAMARA-GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG  132 (175)
T ss_pred             HHHHhC-CCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence            221111 57899996433 3333333443333 3467899999999999999874

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.32  E-value=7.1e-11  Score=97.93  Aligned_cols=161  Identities=15%  Similarity=0.213  Sum_probs=99.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccH-------HHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD-------EIIFNLLSKRL  126 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~-------~~~~~~l~~~l  126 (287)
                      +-+++|+|++||||||+++.|+..++..+++.+++...         ..+... ..|....+       ..+.......+
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~   72 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDKM-SQGIPLTDEDRLPWLERLNDASYSLY   72 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHHH-hcCCCCCcccchHHHHHHHHHHHHHH
Confidence            34689999999999999999999999989988765321         011111 11211111       11112222221


Q ss_pred             HhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080          127 EAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM  206 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~  206 (287)
                      ...    ..|+|+..+.. ......+...+.+-.+|||+++.+++.+|+.+|..+                         
T Consensus        73 ~~~----~~g~iv~s~~~-~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~-------------------------  122 (176)
T PRK09825         73 KKN----ETGFIVCSSLK-KQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGH-------------------------  122 (176)
T ss_pred             hcC----CCEEEEEEecC-HHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCC-------------------------
Confidence            111    35788866543 333444555555667899999999999999998521                         


Q ss_pred             CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                                       ..+.+.+..+++.+...       -.....++.||++.+++++..++.+.+....
T Consensus       123 -----------------~~~~~vl~~Q~~~~e~~-------~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~  170 (176)
T PRK09825        123 -----------------FMPPDLLQSQFDALERP-------CADEHDIARIDVNHDIENVTEQCRQAVQAFR  170 (176)
T ss_pred             -----------------CCCHHHHHHHHHHcCCC-------CCCcCCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence                             12455666555544321       1112348999999999999988888886544

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.31  E-value=4.3e-11  Score=100.09  Aligned_cols=164  Identities=12%  Similarity=0.074  Sum_probs=103.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCc--------hHHHHHHHHhcCCcccHH-------
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGS--------LSQQLSEIVNQGKLVSDE-------  116 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~--------~~~~i~~~l~~g~~~~~~-------  116 (287)
                      .++++|+|+||+||||||+++.|.+++.-.++++....|.. ..+..        ..+.+...+..|.++...       
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y   80 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY   80 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence            47889999999999999999999988743444444444431 11111        234566667777665432       


Q ss_pred             -HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc--EEEEEecC-HHHHHHHHhCCCccccCCCcccccc
Q 023080          117 -IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDID--LVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVAN  192 (287)
Q Consensus       117 -~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d--~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~  192 (287)
                       +-...+...+..     ++.+|+|.-+....+   +... .|+  ++|||..| .+++.+|+.+|.             
T Consensus        81 Gt~~~~i~~~~~~-----g~~~i~d~~~~g~~~---l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~-------------  138 (186)
T PRK14737         81 GTPKAFIEDAFKE-----GRSAIMDIDVQGAKI---IKEK-FPERIVTIFIEPPSEEEWEERLIHRG-------------  138 (186)
T ss_pred             cCcHHHHHHHHHc-----CCeEEEEcCHHHHHH---HHHh-CCCCeEEEEEECCCHHHHHHHHHhcC-------------
Confidence             122334444444     467888865444433   3332 244  57888875 688999998874             


Q ss_pred             ccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHH
Q 023080          193 INVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLE  272 (287)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~  272 (287)
                                                     .++++.+++|++.......     +...... .|+++ +.++...++.+
T Consensus       139 -------------------------------~~s~e~i~~Rl~~~~~e~~-----~~~~~D~-vI~N~-dle~a~~ql~~  180 (186)
T PRK14737        139 -------------------------------TDSEESIEKRIENGIIELD-----EANEFDY-KIIND-DLEDAIADLEA  180 (186)
T ss_pred             -------------------------------CCCHHHHHHHHHHHHHHHh-----hhccCCE-EEECc-CHHHHHHHHHH
Confidence                                           4467789999887643221     2222233 34555 89999999998


Q ss_pred             Hhcc
Q 023080          273 ALNL  276 (287)
Q Consensus       273 ~l~~  276 (287)
                      +|..
T Consensus       181 ii~~  184 (186)
T PRK14737        181 IICG  184 (186)
T ss_pred             HHhc
Confidence            8864

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.31  E-value=1.5e-11  Score=98.25  Aligned_cols=103  Identities=26%  Similarity=0.313  Sum_probs=63.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      +|+|.|+|||||||+|+.|++++|+++++.+.+..+...      ........      ...+...+...+.....  ..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~------~~~~~~~~------~~~i~~~l~~~~~~~~~--~~   66 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG------KLASEVAA------IPEVRKALDERQRELAK--KP   66 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH------HHHHHhcc------cHhHHHHHHHHHHHHhh--CC
Confidence            478999999999999999999999999999744322111      00000000      00111122222222111  24


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          136 GFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       136 g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      .||+||......    +  ....+++|||++|++...+|+..|
T Consensus        67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHHH
Confidence            799998643211    0  224689999999999999999884

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.30  E-value=4.8e-11  Score=101.59  Aligned_cols=123  Identities=18%  Similarity=0.210  Sum_probs=67.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLE  127 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~  127 (287)
                      ..++.+|.|.|++||||||+++.|++.++   +.+++.|++......  ..........+........+.+...+.....
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   80 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH--LSFEERVKTNYDHPDAFDHDLLIEHLKALKA   80 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc--CCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence            45788999999999999999999999983   456777776542100  0000000000000011112222222222111


Q ss_pred             hc-------------------ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          128 AG-------------------QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       128 ~~-------------------~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..                   .......+|+||...-..  ..+.  ..+|.+|||++|.++.+.|...|.
T Consensus        81 ~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~~~R~~~Rd  147 (209)
T PRK05480         81 GKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIRLIRRLKRD  147 (209)
T ss_pred             CCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHHHHHHHhhc
Confidence            00                   011123578888643211  0111  136899999999999999998875

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.30  E-value=7.1e-11  Score=97.81  Aligned_cols=113  Identities=22%  Similarity=0.097  Sum_probs=64.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKR  125 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~  125 (287)
                      ..+|.+|+|+|+|||||||+++.|+++++     ..+++. +.+++.+.........-.+.         ......+...
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~~~~~~~~~~~---------~~~~~~l~~~   73 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHYGYDKQSRIEM---------ALKRAKLAKF   73 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCCCCCHHHHHHH---------HHHHHHHHHH
Confidence            45778999999999999999999999985     556665 34454332211000000000         0011112222


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                      +...    +..+|+||......-.........+.++|||+++++++.+|+.+
T Consensus        74 l~~~----g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         74 LADQ----GMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             HHhC----CCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence            2221    35688887532211112222334456889999999999999753

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.29  E-value=8.6e-11  Score=94.65  Aligned_cols=114  Identities=24%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCccc---HHHHHHHHHHHHHhcccC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS---DEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~---~~~~~~~l~~~l~~~~~~  132 (287)
                      +|+|+|+|||||||+|+.|++.++..+++.|++......          ..+..|...+   .+.....+..........
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence            378999999999999999999999999999776543110          0011111111   011111111111111001


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHh--cCccEEEEEecCHHHHHHHHhCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEV--MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~--~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+..+|+|...........+...  +.+-.+|+|+++.+++.+|+.+|.
T Consensus        71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~  119 (150)
T cd02021          71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK  119 (150)
T ss_pred             CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence            14678898654555555555554  234568999999999999999884

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.28  E-value=6.3e-11  Score=112.80  Aligned_cols=109  Identities=19%  Similarity=0.271  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      |.|+|+|+|||||||+++.|++++|++++++|+++.+.      .+..+.+++.. |+....+...+.+.+.+...    
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~----   70 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVERD----   70 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcC----
Confidence            46999999999999999999999999999999988762      23334444432 33333333344444332221    


Q ss_pred             CccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          134 ESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       134 ~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                       ..+|-.|  .+....+.+.+..    ..+|||+++.+++.+|+..+
T Consensus        71 -~~Vis~Gggvv~~~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         71 -NVVVATGGGVVIDPENRELLKK----EKTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             -CEEEECCCccccChHHHHHHhc----CeEEEEECCHHHHHHHhccC
Confidence             2233233  2333444444543    45899999999999999764

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.27  E-value=2.1e-10  Score=97.16  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=97.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcC---Cc----hHHHHHHHHhcCCcccH-----HH-
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASS---GS----LSQQLSEIVNQGKLVSD-----EI-  117 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~---~~----~~~~i~~~l~~g~~~~~-----~~-  117 (287)
                      +.++..|+|+||+||||||+++.|+..++...+......|....+.   ..    ....+...+..+.++..     .. 
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   81 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY   81 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence            4567789999999999999999999988643333333332211000   00    12333444444433211     00 


Q ss_pred             --HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080          118 --IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN  194 (287)
Q Consensus       118 --~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~  194 (287)
                        ....+...+..     +..+|+|.-+...   ..+.. ...+-.++++.++.+++.+|+..|.               
T Consensus        82 ~~~~~~i~~~l~~-----g~~vi~dl~~~g~---~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~---------------  138 (205)
T PRK00300         82 GTPRSPVEEALAA-----GKDVLLEIDWQGA---RQVKKKMPDAVSIFILPPSLEELERRLRGRG---------------  138 (205)
T ss_pred             cCcHHHHHHHHHc-----CCeEEEeCCHHHH---HHHHHhCCCcEEEEEECcCHHHHHHHHHhcC---------------
Confidence              12223333333     3567888644332   23333 2222234445667889999998874               


Q ss_pred             ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                                   .++.+.+++|+..+.....    ++...+.+ .++  .+++++..++..++
T Consensus       139 -----------------------------~~~~~~i~~rl~~~~~~~~----~~~~~d~v-i~n--~~~e~~~~~l~~il  182 (205)
T PRK00300        139 -----------------------------TDSEEVIARRLAKAREEIA----HASEYDYV-IVN--DDLDTALEELKAII  182 (205)
T ss_pred             -----------------------------CCCHHHHHHHHHHHHHHHH----hHHhCCEE-EEC--CCHHHHHHHHHHHH
Confidence                                         4567889999998876543    33333433 343  48999999999999


Q ss_pred             ccc
Q 023080          275 NLD  277 (287)
Q Consensus       275 ~~~  277 (287)
                      ...
T Consensus       183 ~~~  185 (205)
T PRK00300        183 RAE  185 (205)
T ss_pred             HHH
Confidence            875

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.27  E-value=1e-10  Score=95.20  Aligned_cols=176  Identities=15%  Similarity=0.123  Sum_probs=108.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH-------H
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS-------K  124 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~-------~  124 (287)
                      .+..+|++.|..+|||||++..|.+.+. +..+...+ .......+.+|+.+..++.+..-+++.+++-++.       .
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l-~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAEL-LRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHH-hccChHHh-hhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            4778999999999999999999999883 33322233 3334567789999999999888888877654431       1


Q ss_pred             HHHhcccCCCccEEEeCCCC-----------CHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccc
Q 023080          125 RLEAGQAGGESGFILDGFPR-----------TVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVAN  192 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~-----------~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~  192 (287)
                      .+...... +..+|+|-|--           ..++....+. ...||+++||+++++.+ .|..+++...          
T Consensus        81 ~i~e~l~k-g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~-a~rggfG~Er----------  148 (208)
T KOG3327|consen   81 LIKEKLAK-GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDA-ARRGGFGEER----------  148 (208)
T ss_pred             HHHHHHhc-CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHH-HHhcCcchhH----------
Confidence            12221222 45688885421           1222222222 23599999999999994 3333432100          


Q ss_pred             ccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHH
Q 023080          193 INVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLE  272 (287)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~  272 (287)
                                                     .++.+..++-...|.+..      -.+...++.+|+..++|+|++.|..
T Consensus       149 -------------------------------ye~v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~  191 (208)
T KOG3327|consen  149 -------------------------------YETVAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRS  191 (208)
T ss_pred             -------------------------------HHHHHHHHHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHH
Confidence                                           112222222233332221      1123468999999999999999987


Q ss_pred             Hhccch
Q 023080          273 ALNLDE  278 (287)
Q Consensus       273 ~l~~~~  278 (287)
                      ++++-.
T Consensus       192 i~e~~~  197 (208)
T KOG3327|consen  192 LVENVL  197 (208)
T ss_pred             HHHHhc
Confidence            776543

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.26  E-value=6e-11  Score=97.18  Aligned_cols=157  Identities=16%  Similarity=0.154  Sum_probs=89.1

Q ss_pred             EcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHH---HHHHHHHHHHHhcccCCCcc
Q 023080           60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDE---IIFNLLSKRLEAGQAGGESG  136 (287)
Q Consensus        60 ~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~---~~~~~l~~~l~~~~~~~~~g  136 (287)
                      +|++||||||+++.|++.+|..+++.|.+.....         +.. ...|....++   .....+..........++.+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS   70 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence            5999999999999999999999999865421100         000 0011111110   11111111111100111234


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccc
Q 023080          137 FILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCM  216 (287)
Q Consensus       137 ~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~  216 (287)
                      +|+..+. ...+.+.+.....+-.+|||++|.+++.+|+..|.-+                                   
T Consensus        71 viv~s~~-~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~-----------------------------------  114 (163)
T PRK11545         71 LIVCSAL-KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH-----------------------------------  114 (163)
T ss_pred             EEEEecc-hHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC-----------------------------------
Confidence            5554443 3334444444444557899999999999999998521                                   


Q ss_pred             cccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          217 SKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       217 ~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                            . .+.+.+..++..+....       .....++.||+..+++++..++...|+.
T Consensus       115 ------~-a~~~vl~~Q~~~~ep~~-------~~e~~~~~id~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        115 ------F-FKTQMLVTQFETLQEPG-------ADETDVLVVDIDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             ------C-CCHHHHHHHHHHcCCCC-------CCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                  0 13455555444442110       0112478899999999999999988853

>PRK06547 hypothetical protein; Provisional

Probab=99.24  E-value=1.2e-11  Score=102.17  Aligned_cols=125  Identities=19%  Similarity=0.174  Sum_probs=71.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHH-HHhcCCcccH--HHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSE-IVNQGKLVSD--EIIFNLLSKRLE  127 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~-~l~~g~~~~~--~~~~~~l~~~l~  127 (287)
                      +.++++|+|.|++||||||+++.|++.+++++++.|++....- ......+.+.+ .+..|+....  +........ +.
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~-~~   89 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGD-WV   89 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCC-cE
Confidence            3578899999999999999999999999999999988864310 10111112222 2223322100  000000000 00


Q ss_pred             hcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          128 AGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                        ....+..+|++|..........+.......++|||++|.++.++|+..|-
T Consensus        90 --~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         90 --SVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             --EeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence              01113468899853332222222111223389999999999999999984

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.23  E-value=6.4e-12  Score=97.37  Aligned_cols=110  Identities=28%  Similarity=0.348  Sum_probs=61.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc-cCCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ-AGGE  134 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~-~~~~  134 (287)
                      +|+|.|+|||||||+|+.|++++|++++++|++++.....  .        ...+...........+...+.... ....
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--E--------RDDDEREYIDADIDLLDDILEQLQNKPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--H--------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--c--------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence            5899999999999999999999999999999954211000  0        001111001112222222222220 0113


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..||+||.-. ...  .+ .....+.+|++.++.++..+|+.+|+
T Consensus        71 ~~~ii~g~~~-~~~--~~-~~~~~~~~i~l~~~~~~~~~~~~~R~  111 (121)
T PF13207_consen   71 DNWIIDGSYE-SEM--EI-RLPEFDHVIYLDAPDEECRERRLKRR  111 (121)
T ss_dssp             -EEEEECCSC-HCC--HS-CCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred             CeEEEeCCCc-cch--hh-hhhcCCEEEEEECCCHHHHHHHHHHH
Confidence            5799999322 110  11 11124578999998886666665553

...

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.23  E-value=5.6e-10  Score=93.73  Aligned_cols=28  Identities=36%  Similarity=0.456  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      +|+|.|++||||||+++.|++++|+.++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~   28 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVV   28 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence            4899999999999999999998876544

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK12338 hypothetical protein; Provisional

Probab=99.22  E-value=7.5e-10  Score=99.16  Aligned_cols=127  Identities=17%  Similarity=0.222  Sum_probs=74.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCC--ch----H-HHHH--HHHhcCC-ccc-------
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSG--SL----S-QQLS--EIVNQGK-LVS-------  114 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~--~~----~-~~i~--~~l~~g~-~~~-------  114 (287)
                      .+|.+|+|.|+|||||||+|+.||+++|+.++..+|.+++.+....  ++    . ....  ..+.... ..+       
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~   81 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA   81 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence            3678999999999999999999999999999977799998765411  11    0 0000  1111110 011       


Q ss_pred             -----HHHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhCCC
Q 023080          115 -----DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       115 -----~~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                           .+.+...+...+.... ..+..+|++|.-.............. +-.+++|..+.+..++|+..|.
T Consensus        82 gf~~q~~~V~~~i~~vi~r~~-~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~  151 (319)
T PRK12338         82 GFEEHASFVIPAIEKVIERAV-TDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRA  151 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhh
Confidence                 1222223222222211 22568999997544443332111111 2234555688899999999885

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.21  E-value=2.5e-10  Score=95.30  Aligned_cols=31  Identities=32%  Similarity=0.403  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      ..++|+|.|+.|+||||++++||+++|..++
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            3578999999999999999999999997654

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.16  E-value=6.8e-10  Score=105.59  Aligned_cols=42  Identities=29%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      ..++++|.|.||+||||||+++.|+++||+.+++.|++.|..
T Consensus       281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            347789999999999999999999999999999999998874

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.16  E-value=6.7e-10  Score=91.85  Aligned_cols=110  Identities=17%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKR  125 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~  125 (287)
                      .++.+|+|+|+|||||||+++.|+..+.     +.+++.|.+ ++.+..+-.. .......+.         ....+...
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~---------~~~~~a~~   71 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR---------RIGFVANL   71 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH---------HHHHHHHH
Confidence            3567899999999999999999999882     566777544 4433211110 000000000         00112222


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl  175 (287)
                      +...    +..+++|+........+.+......-.+|||++|.+++.+|.
T Consensus        72 ~~~~----g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         72 LTRH----GVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             HHhC----CCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence            2221    345667764223333444444433446899999999999994

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.16  E-value=1.9e-10  Score=95.43  Aligned_cols=162  Identities=16%  Similarity=0.137  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcC---Cc----hHHHHHHHHhcCCcccHH--------HHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASS---GS----LSQQLSEIVNQGKLVSDE--------IIF  119 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~---~~----~~~~i~~~l~~g~~~~~~--------~~~  119 (287)
                      .+|+|+||+||||||+++.|++.++..++......|......   ..    ....+...+..+.++...        ...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            478999999999999999999987655555434333211100   00    112334444444433211        112


Q ss_pred             HHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCC
Q 023080          120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGG  198 (287)
Q Consensus       120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~  198 (287)
                      ..+...+.+     +..+|+|.-+.   ....+.. +..+..++++..+.+.+.+|+..|.                   
T Consensus        82 ~~i~~~~~~-----g~~vi~d~~~~---~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~-------------------  134 (180)
T TIGR03263        82 SPVEEALAA-----GKDVLLEIDVQ---GARQVKKKFPDAVSIFILPPSLEELERRLRKRG-------------------  134 (180)
T ss_pred             HHHHHHHHC-----CCeEEEECCHH---HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC-------------------
Confidence            334444444     36788885432   2333333 3333455555777899999998764                   


Q ss_pred             CCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       199 ~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                               ++..+.++.|++.+.....    + ......+ |.++ ++++...++...+.
T Consensus       135 -------------------------~~~~~~i~~rl~~~~~~~~----~-~~~~d~~-i~n~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       135 -------------------------TDSEEVIERRLAKAKKEIA----H-ADEFDYV-IVND-DLEKAVEELKSIIL  179 (180)
T ss_pred             -------------------------CCCHHHHHHHHHHHHHHHh----c-cccCcEE-EECC-CHHHHHHHHHHHHh
Confidence                                     4567788888887764322    1 1222333 3433 78999999988764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.08  E-value=3.4e-09  Score=91.35  Aligned_cols=38  Identities=37%  Similarity=0.475  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE   91 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~   91 (287)
                      +++|.|.|++||||||+++.|+++||+.+++.+.++|.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            57899999999999999999999999999999998776

>TIGR00017 cmk cytidylate kinase

Probab=99.07  E-value=5.2e-09  Score=89.62  Aligned_cols=39  Identities=26%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      ++.|.|.||+||||||+++.|++++|+.+++.+++.|..
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            468999999999999999999999999999999888764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.04  E-value=6.3e-09  Score=87.21  Aligned_cols=39  Identities=31%  Similarity=0.373  Sum_probs=36.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      .+.|.|-||.||||||+|+.||++||+.+++++.+.|..
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~   42 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV   42 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence            378999999999999999999999999999999988864

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.04  E-value=2.6e-09  Score=103.57  Aligned_cols=109  Identities=19%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC------CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH--H
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGV------PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL--L  122 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~------~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~--l  122 (287)
                      ..++..|+|+|+|||||||+|+.|++.++.      .+++.| .++..+..+..+...-++.          ....+  +
T Consensus       389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~----------~~~~l~~~  457 (568)
T PRK05537        389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDL----------NILRIGFV  457 (568)
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHH----------HHHHHHHH
Confidence            346778999999999999999999999986      778874 4455443221111111100          01111  1


Q ss_pred             HHHHHhcccCCCccEEEeC-CCCCHH---HHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080          123 SKRLEAGQAGGESGFILDG-FPRTVK---QAEILEEVMDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg-~p~~~~---~~~~l~~~~~~d~vi~L~~~~e~l~~Rl  175 (287)
                      ...+...    +.++|+|. +|....   ..+.+...+ .-++|||++|.+++.+|.
T Consensus       458 a~~v~~~----Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~  509 (568)
T PRK05537        458 ASEITKN----GGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRD  509 (568)
T ss_pred             HHHHHhC----CCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhc
Confidence            1112111    46778885 443321   122222222 125799999999999996

>TIGR00235 udk uridine kinase

Probab=99.04  E-value=2e-09  Score=91.55  Aligned_cols=123  Identities=17%  Similarity=0.259  Sum_probs=66.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLE  127 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~  127 (287)
                      ++++.+|+|.|++||||||+++.|+..++   +.+++.|+.+......  .........+..-...+.+.+...+.....
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   80 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHL--EMAERKKTNFDHPDAFDNDLLYEHLKNLKN   80 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhC--CHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence            45678899999999999999999999875   4567776654321000  000000000000000111111111111110


Q ss_pred             h-----------------c--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          128 A-----------------G--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       128 ~-----------------~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .                 .  ......-||+||++....  ..+..  .+|.+||++++.++.+.|+..|.
T Consensus        81 g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~~--~~d~~I~v~~~~~~~l~R~~~R~  147 (207)
T TIGR00235        81 GSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLRD--LMDLKIFVDTPLDIRLIRRIERD  147 (207)
T ss_pred             CCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHHH--hCCEEEEEECChhHHHHHHHHHH
Confidence            0                 0  001134688998755322  11221  37899999999999999998874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.01  E-value=8e-09  Score=102.29  Aligned_cols=41  Identities=34%  Similarity=0.417  Sum_probs=37.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      .+.++|.|.||+||||||+++.||++||+++++++.+.|..
T Consensus       440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        440 DRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             cCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            34668999999999999999999999999999999998875

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.01  E-value=3.2e-09  Score=89.67  Aligned_cols=123  Identities=25%  Similarity=0.255  Sum_probs=68.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcC------C-----------chHHHHHHHHhcCC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASS------G-----------SLSQQLSEIVNQGK  111 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~------~-----------~~~~~i~~~l~~g~  111 (287)
                      .++.+|.|.|++||||||+|+.|++.++..   .|+.|++....-...      .           .+.+.+.. +.+|+
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence            456889999999999999999999999855   778777765311100      0           00111111 22233


Q ss_pred             cccHHHHHHHHHHHH-HhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          112 LVSDEIIFNLLSKRL-EAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       112 ~~~~~~~~~~l~~~l-~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+..-...-....+. ......+..-+|++|+..-.+  +.+..  ..|+-||++++.++.+.|...|.
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~RliRri~RD  149 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVRLIRRIKRD  149 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHHHHHHHHHH
Confidence            221111100000000 000011245788999643322  11221  26799999999999888887774

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.00  E-value=2.1e-08  Score=89.16  Aligned_cols=125  Identities=18%  Similarity=0.154  Sum_probs=70.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-eeehhHHHHHHHHcCCc------hHHHHHHHHh--cCCcccH-------
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP-HIATGDLVREELASSGS------LSQQLSEIVN--QGKLVSD-------  115 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~-~i~~d~llr~~~~~~~~------~~~~i~~~l~--~g~~~~~-------  115 (287)
                      .+|+.|+|.|++||||||+|..||++||.. +++ .|.+|+.+.....      +.......+.  .+..-++       
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~  168 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGF  168 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhH
Confidence            478899999999999999999999999998 456 4777765543110      0000000000  0001111       


Q ss_pred             ----HHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc-EEEEEec-CHHHHHHHHhCCC
Q 023080          116 ----EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDID-LVVNLKL-CEDVLLEKCLGRR  179 (287)
Q Consensus       116 ----~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~~-~~e~l~~Rl~~R~  179 (287)
                          +.+...+...+...-.. +...|++|.-........+... .++ +.++|.+ +.+...+|+..|.
T Consensus       169 ~~~~~~v~~gi~~~I~~~~~~-g~s~IiEGvhl~P~~i~~~~~~-~~~~i~~~l~i~~ee~h~~RF~~R~  236 (301)
T PRK04220        169 ERHVEPVSVGVEAVIERALKE-GISVIIEGVHIVPGFIKEKYLE-NPNVFMFVLTLSDEEAHKARFYARA  236 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCcEEEecCCCCHHHHHHhhhc-CCCEEEEEEEECCHHHHHHHHHHHH
Confidence                11111222222222112 5789999987766654432222 233 3455554 5688999998774

>COG0645 Predicted kinase [General function prediction only]

Probab=99.00  E-value=3e-08  Score=80.17  Aligned_cols=114  Identities=23%  Similarity=0.285  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH----HHHHH---HHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI----IFNLL---SKRLE  127 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~----~~~~l---~~~l~  127 (287)
                      ..+++.|.|||||||+|+.|++.+|..+|.+ |.+++.+..-+.....     ..| ....+.    +..++   ...+.
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g~p~~~r~-----~~g-~ys~~~~~~vy~~l~~~A~l~l~   74 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFGVPEETRG-----PAG-LYSPAATAAVYDELLGRAELLLS   74 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEeh-HHHHHHhcCCcccccC-----CCC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999 5556655541110000     011 111111    11222   12222


Q ss_pred             hcccCCCccEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCc
Q 023080          128 AGQAGGESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                      .     +..+|+|+......+........    -+-..|.++++.+++..|+..|..
T Consensus        75 ~-----G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          75 S-----GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             C-----CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence            2     57899998766666555544432    244569999999999999999964

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.99  E-value=6.1e-08  Score=78.00  Aligned_cols=115  Identities=23%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      +++++++|.||+||||+++.+.+.+ +...++.++++-+.....+..  ...+.+.   -+|.+....+...+.......
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glv--e~rD~~R---klp~e~Q~~lq~~Aa~rI~~~   78 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLV--EHRDEMR---KLPLENQRELQAEAAKRIAEM   78 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCc--ccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999998 888899999987754432221  1122222   134444443333332221111


Q ss_pred             CCccEEEeCC----------CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080          133 GESGFILDGF----------PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       133 ~~~g~Ildg~----------p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                       ..-+|+|+.          |....   ..-....||++|.|..+++.++.|-.+
T Consensus        79 -~~~iivDtH~~IkTP~GylpgLP~---~Vl~~l~pd~ivllEaDp~~Il~RR~~  129 (189)
T COG2019          79 -ALEIIVDTHATIKTPAGYLPGLPS---WVLEELNPDVIVLLEADPEEILERRLR  129 (189)
T ss_pred             -hhceEEeccceecCCCccCCCCcH---HHHHhcCCCEEEEEeCCHHHHHHHHhc
Confidence             122788842          22222   223344699999999999988877654

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.98  E-value=4e-10  Score=87.72  Aligned_cols=111  Identities=23%  Similarity=0.251  Sum_probs=57.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHHHHhcc-cCCC
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ-AGGE  134 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~-~~~~  134 (287)
                      |+|.|+|||||||+|+.|+++++       ..+.......... ...-............+....++........ ....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG   73 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence            78999999999999999999982       2222222211110 0000001122223333333333322222110 1114


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEE-EEEecCHHHHHHHHhCCCc
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLV-VNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~v-i~L~~~~e~l~~Rl~~R~~  180 (287)
                      ..+|+|+........      ...... |+|+|+++++.+|+..|..
T Consensus        74 ~~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~~~R~~~R~~  114 (129)
T PF13238_consen   74 RNIIIDGILSNLELE------RLFDIKFIFLDCSPEELRKRLKKRGR  114 (129)
T ss_dssp             SCEEEEESSEEECET------TEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred             CcEEEecccchhccc------ccceeeEEEEECCHHHHHHHHHhCCC
Confidence            678999865442210      011223 9999999999999999864

...

>PRK07667 uridine kinase; Provisional

Probab=98.97  E-value=2.5e-09  Score=90.05  Aligned_cols=121  Identities=11%  Similarity=0.016  Sum_probs=67.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHc----CCchH-------------HHHHHHHhcC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELAS----SGSLS-------------QQLSEIVNQG  110 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~----~~~~~-------------~~i~~~l~~g  110 (287)
                      .+.+|.|.|++||||||+|+.|++.++     ..+++.|+++......    .....             ..+-..+..+
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~   95 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE   95 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            448899999999999999999999873     4588999877654321    11100             0010111122


Q ss_pred             CcccHHHHHHHHHHHHHhc-ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          111 KLVSDEIIFNLLSKRLEAG-QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       111 ~~~~~~~~~~~l~~~l~~~-~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      ..+....+........... .......+|+||......   .+..  .+|.+|++++|+++.++|+..|
T Consensus        96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~---~~~~--~~d~~v~V~~~~~~~~~R~~~r  159 (193)
T PRK07667         96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRK---EWRD--FFHYMVYLDCPRETRFLRESEE  159 (193)
T ss_pred             CeEEEeeeccccccccccceecCCCCEEEEEehhhhhh---hHHh--hceEEEEEECCHHHHHHHHhcc
Confidence            1110000000000000000 011124678888543211   1221  3789999999999999999876

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.96  E-value=2.7e-09  Score=106.58  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      +.|.|.|||||||||+|+.||++||+.+++++.+.|..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            37899999999999999999999999999999988874

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.96  E-value=1.6e-08  Score=84.34  Aligned_cols=109  Identities=21%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKR  125 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~  125 (287)
                      .++.+|+|+|++||||||+++.|+..+   |  ..+++.| .++..+..+... .......+.        .+.. +...
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~~~~~~~--------~~~~-~~~~   85 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEEDRKENIR--------RIGE-VAKL   85 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHHHHHHHH--------HHHH-HHHH
Confidence            467899999999999999999999987   2  3456654 444433221111 110000000        0111 1111


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHH
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEK  174 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~R  174 (287)
                      +...    +..+|+|.......+...+.....  +-.+|||++|.+++.+|
T Consensus        86 ~~~~----G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        86 FVRN----GIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             HHcC----CCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence            2221    467888875444555555554432  34679999999999988

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=98.96  E-value=7.8e-08  Score=83.17  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ...+..+|++.|+.|||||++|+.||+++|+.|+-
T Consensus        67 f~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP  101 (393)
T KOG3877|consen   67 FHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFP  101 (393)
T ss_pred             hcccceEEEEeCCcccCchhHHHHHHHHhCCcccc
Confidence            34467899999999999999999999999987763

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.94  E-value=2.6e-09  Score=89.17  Aligned_cols=36  Identities=25%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVRE   91 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~   91 (287)
                      +|.|.|++||||||+|+.|++.+ ++.+|+.|++...
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            47899999999999999999998 7899999988754

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK06696 uridine kinase; Validated

Probab=98.93  E-value=2.4e-09  Score=92.21  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCe--eehhHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPH--IATGDLVRE   91 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~--i~~d~llr~   91 (287)
                      ..+|++|+|.|++||||||+|+.|++.+   |..+  +++|++...
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~   64 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP   64 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence            3478899999999999999999999999   5544  457777643

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.93  E-value=3.7e-08  Score=87.68  Aligned_cols=96  Identities=18%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc-cc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG-QA  131 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~-~~  131 (287)
                      .+.+|+|+|++||||||+++.|. ..|+.+++--.                           ...+..++.. .... ..
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~---------------------------~~L~~~l~~~-~~~~~~~   55 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP---------------------------PSLLPKLVEL-LAQSGGI   55 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC---------------------------HHHHHHHHHH-HHhcCCC
Confidence            34579999999999999999996 45877664311                           1111111111 1111 01


Q ss_pred             CCCccEEEeCCCCC-----HHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          132 GGESGFILDGFPRT-----VKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       132 ~~~~g~Ildg~p~~-----~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      . .-.+++|-....     .+....+...+....+|||+++.+++++|+..+
T Consensus        56 ~-~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~  106 (288)
T PRK05416         56 R-KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSET  106 (288)
T ss_pred             C-CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence            1 235677753221     122233333333446799999999999999753

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.92  E-value=1e-08  Score=86.50  Aligned_cols=35  Identities=26%  Similarity=0.247  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVR   90 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr   90 (287)
                      +|.|.|++||||||+++.|+..+   ++.+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            47899999999999999999987   467888887653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.92  E-value=1.2e-08  Score=97.52  Aligned_cols=101  Identities=11%  Similarity=0.078  Sum_probs=75.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ..+|..|++.|+|||||||+|+.+++..|+.+++.|.+- .                       ...........|..  
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~--  419 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ--  419 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC--
Confidence            346788999999999999999999999999999997651 1                       01122334445554  


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCc
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                         +..+|+|....+..+...+...    +.+-.+|++++|.+++++|+..|..
T Consensus       420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence               4789999977776666555443    2355688999999999999998853

Note that the EC number for the kinase function is: 2.7.1.78

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.91  E-value=2.3e-08  Score=84.43  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHH--HH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLL--SK  124 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l--~~  124 (287)
                      .+|.+|+|+|++||||||+++.|+..+     +..+++.|++- ..+.....+.       ..   -..+.+..+.  ..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~-------~~---~~~~~~~~l~~~a~   90 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS-------DA---DRKENIRRVGEVAK   90 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC-------cc---cHHHHHHHHHHHHH
Confidence            477899999999999999999999986     34566654443 3221110000       00   0011111111  11


Q ss_pred             HHHhcccCCCccEEEeCCCCC-HHHHHHHHHhc-CccE-EEEEecCHHHHHHH
Q 023080          125 RLEAGQAGGESGFILDGFPRT-VKQAEILEEVM-DIDL-VVNLKLCEDVLLEK  174 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~-~~~~~~l~~~~-~~d~-vi~L~~~~e~l~~R  174 (287)
                      .+...     ..+|+..|... ....+.+.... ...+ +|||++|.+++.+|
T Consensus        91 ~~~~~-----G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R  138 (198)
T PRK03846         91 LMVDA-----GLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR  138 (198)
T ss_pred             HHhhC-----CCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence            12111     23445555442 34444444433 2344 79999999999999

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.89  E-value=4.3e-08  Score=81.56  Aligned_cols=111  Identities=24%  Similarity=0.231  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhH-HHHHHHHc-CCc-hHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGD-LVREELAS-SGS-LSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~-llr~~~~~-~~~-~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      +.|+++|+|||||||+|+.|++.+   +..+++... ..+-.... .-+ ..+...+.+.       +-..+++..++. 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk-   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK-   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc-
Confidence            468899999999999999999987   233333221 22211100 001 1111112111       122334444444 


Q ss_pred             cccCCCccEEEeC--CCCCHH-HHHHH-HHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          129 GQAGGESGFILDG--FPRTVK-QAEIL-EEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       129 ~~~~~~~g~Ildg--~p~~~~-~~~~l-~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                           +.-+|+|.  |..... |.... .....+..+||+.+|.+++++|-..|
T Consensus        74 -----n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er  122 (261)
T COG4088          74 -----NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER  122 (261)
T ss_pred             -----ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence                 24677775  222222 22111 12234778999999999999988665

>PTZ00301 uridine kinase; Provisional

Probab=98.88  E-value=1.5e-08  Score=86.35  Aligned_cols=117  Identities=18%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHHHHHHHcCCchHHHHHHHHhcC--CcccHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLVREELASSGSLSQQLSEIVNQG--KLVSDEIIFNLLSK  124 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g--~~~~~~~~~~~l~~  124 (287)
                      -++|.|.|+|||||||+|+.|++.++       +.+++.|++.+...  .-+...  ......+  ..+..+.+...+. 
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~--~~~~~~--~~~~~~d~p~a~D~~~l~~~l~-   77 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQS--NIPESE--RAYTNYDHPKSLEHDLLTTHLR-   77 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcc--cCCHHH--hcCCCCCChhhhCHHHHHHHHH-
Confidence            36899999999999999999988762       23566677654311  000000  0000001  0011111222221 


Q ss_pred             HHHhc--------------------ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          125 RLEAG--------------------QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       125 ~l~~~--------------------~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+...                    ......-+|++|+..- .. ..+..  -.|+.||++++.++++.|...|.
T Consensus        78 ~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l-~~-~~l~~--l~D~~ifvd~~~d~~~~Rr~~Rd  148 (210)
T PTZ00301         78 ELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLF-TN-AELRN--EMDCLIFVDTPLDICLIRRAKRD  148 (210)
T ss_pred             HHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhh-CC-HHHHH--hCCEEEEEeCChhHHHHHHHhhh
Confidence            11111                    0011345677885431 11 11222  26889999999999999998885

>PHA03132 thymidine kinase; Provisional

Probab=98.87  E-value=3.7e-08  Score=94.55  Aligned_cols=127  Identities=19%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC---cccHHHHH----------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK---LVSDEIIF----------  119 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~---~~~~~~~~----------  119 (287)
                      +.++|+|.|+.||||||+++.|++.+|..++-+.+-......-.+..+..+.+.+.++.   .-+...+.          
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf  335 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF  335 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence            37899999999999999999999998555543322111100001234556666554332   11111111          


Q ss_pred             HHHHHHHHh---------cccCCCccEEEeCCCCCHH----------------H-HHHHHHhc--CccEEEEEecCHHHH
Q 023080          120 NLLSKRLEA---------GQAGGESGFILDGFPRTVK----------------Q-AEILEEVM--DIDLVVNLKLCEDVL  171 (287)
Q Consensus       120 ~~l~~~l~~---------~~~~~~~g~Ildg~p~~~~----------------~-~~~l~~~~--~~d~vi~L~~~~e~l  171 (287)
                      ..+..++..         +....+..+|+|-++....                . ...+..+.  .||++|||+++++++
T Consensus       336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a  415 (580)
T PHA03132        336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN  415 (580)
T ss_pred             HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence            011111111         1112245678885442211                1 12222222  489999999999999


Q ss_pred             HHHHhCCC
Q 023080          172 LEKCLGRR  179 (287)
Q Consensus       172 ~~Rl~~R~  179 (287)
                      ++|+.+|.
T Consensus       416 lkRIkkRg  423 (580)
T PHA03132        416 LRRVKKRG  423 (580)
T ss_pred             HHHHHhcC
Confidence            99999884

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.87  E-value=5e-08  Score=78.65  Aligned_cols=107  Identities=21%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH--HHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL--LSKRLEA  128 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~--l~~~l~~  128 (287)
                      +|+|+|+|||||||+++.|++.+   +.  .+++. +-++..+.........        .  ..+.+..+  +...+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~~   69 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLAD   69 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHHh
Confidence            37899999999999999999998   54  34554 4444433221110000        0  00111111  1111222


Q ss_pred             cccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhC
Q 023080          129 GQAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                      .    +..+|+|.......+...+....  .+-.+|||++|.+++.+|-.+
T Consensus        70 ~----G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          70 A----GLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             C----CCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence            1    45788887544545454444443  345679999999999998654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.85  E-value=2e-08  Score=83.66  Aligned_cols=164  Identities=21%  Similarity=0.224  Sum_probs=92.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC----CeeehhHHHHHHHHcCCc----hHHHHHHHHhcCCcccHH--------H
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV----PHIATGDLVREELASSGS----LSQQLSEIVNQGKLVSDE--------I  117 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~----~~i~~d~llr~~~~~~~~----~~~~i~~~l~~g~~~~~~--------~  117 (287)
                      +..|+|+||+||||||++++|.+.++-    ++-.+..-.|....++..    ....+......|.++...        +
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            345889999999999999999998753    222221221110001111    123555555555543211        1


Q ss_pred             HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC-HHHHHHHHhCCCccccCCCcccccccccc
Q 023080          118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVANINVK  196 (287)
Q Consensus       118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~  196 (287)
                      ....+...+..     ++.+|+|.-|.   -+..+......-++|||.++ .+.+.+|+..|.                 
T Consensus        82 ~~~~i~~~~~~-----gk~~il~~~~~---g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~-----------------  136 (183)
T PF00625_consen   82 SKSAIDKVLEE-----GKHCILDVDPE---GVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRG-----------------  136 (183)
T ss_dssp             EHHHHHHHHHT-----TTEEEEEETHH---HHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTT-----------------
T ss_pred             ccchhhHhhhc-----CCcEEEEccHH---HHHHHHhcccCceEEEEEccchHHHHHHHhccc-----------------
Confidence            22334444444     35678874433   34445544333367888766 567777776553                 


Q ss_pred             CCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          197 GGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       197 ~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                                 ++..+.+..|+..+.....    ++...+ .+ |.+ .++++.+.+|.++|+.
T Consensus       137 ---------------------------~~~~~~i~~r~~~~~~~~~----~~~~fd-~v-i~n-~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  137 ---------------------------DESEEEIEERLERAEKEFE----HYNEFD-YV-IVN-DDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             ---------------------------HCHHHHHHHHHHHHHHHHG----GGGGSS-EE-EEC-SSHHHHHHHHHHHHHH
T ss_pred             ---------------------------cccHHHHHHHHHHHHHHHh----HhhcCC-EE-EEC-cCHHHHHHHHHHHHHh
Confidence                                       4456677778777765433    333323 22 333 3899999999998874

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.84  E-value=2.5e-07  Score=86.49  Aligned_cols=44  Identities=39%  Similarity=0.528  Sum_probs=36.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS   95 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~   95 (287)
                      .+|.+|+|+|++||||||++..||.++|+.++-..|.+++.+..
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~  296 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRA  296 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHh
Confidence            46899999999999999999999999999855444777775543

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.83  E-value=7.6e-08  Score=96.91  Aligned_cols=40  Identities=28%  Similarity=0.338  Sum_probs=37.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      ..++|.|.||+||||||+|+.||++||+.+++++.++|..
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            3358999999999999999999999999999999999875

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.82  E-value=3.3e-08  Score=79.87  Aligned_cols=109  Identities=19%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKRL  126 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~l  126 (287)
                      +|..|.|+|.|||||||+|+.|.++|   |  ..+++. |.+|..+...-.. .+.-.+.+.         -...+...+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll   70 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL   70 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence            46789999999999999999999998   3  345666 4445433221111 111111111         111223333


Q ss_pred             HhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHHH
Q 023080          127 EAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~Rl  175 (287)
                      ...    +..+|++..--..+..+.......  .-+-||++||.+++.+|=
T Consensus        71 ~~~----G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   71 ADQ----GIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             HHT----TSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred             HhC----CCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence            332    345666543222333333333322  236799999999999994

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PLN02348 phosphoribulokinase

Probab=98.81  E-value=2.8e-08  Score=91.15  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=26.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ..++.+|.|.|++||||||+++.|++.++
T Consensus        46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35778999999999999999999999986

>PLN02772 guanylate kinase

Probab=98.79  E-value=9.5e-08  Score=87.65  Aligned_cols=172  Identities=17%  Similarity=0.141  Sum_probs=98.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CCc----hHHHHHHHHhcCCcccHHH-------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SGS----LSQQLSEIVNQGKLVSDEI-------  117 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~~----~~~~i~~~l~~g~~~~~~~-------  117 (287)
                      ....|+|+||+|+||+|+.++|.+.+.. ..+.+....|..-..   +..    ....+...+.+|.++....       
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            4457899999999999999999987632 223333333331111   000    1134556666666654322       


Q ss_pred             -HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccccc
Q 023080          118 -IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVK  196 (287)
Q Consensus       118 -~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~  196 (287)
                       -...+...+..     ++.+|+|--+....+....  ...+-.++++..+.+++.+|+..|.                 
T Consensus       214 Tsk~~V~~vl~~-----Gk~vILdLD~qGar~Lr~~--~l~~v~IFI~PPSlEeLe~RL~~RG-----------------  269 (398)
T PLN02772        214 TSIEAVEVVTDS-----GKRCILDIDVQGARSVRAS--SLEAIFIFICPPSMEELEKRLRARG-----------------  269 (398)
T ss_pred             ccHHHHHHHHHh-----CCcEEEeCCHHHHHHHHHh--cCCeEEEEEeCCCHHHHHHHHHhcC-----------------
Confidence             22333444444     3678887544444333221  1222233333445789999998774                 


Q ss_pred             CCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          197 GGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       197 ~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                                 .++++.+++|++.+.......  .+......+ |.+. ++++.++++.++|..
T Consensus       270 ---------------------------teseE~I~kRL~~A~~Ei~~~--~~~~~fD~v-IvND-dLe~A~~~L~~iL~~  318 (398)
T PLN02772        270 ---------------------------TETEEQIQKRLRNAEAELEQG--KSSGIFDHI-LYND-NLEECYKNLKKLLGL  318 (398)
T ss_pred             ---------------------------CCCHHHHHHHHHHHHHHHhhc--cccCCCCEE-EECC-CHHHHHHHHHHHHhh
Confidence                                       456788999999986543210  011111233 3333 899999999999987


Q ss_pred             chh
Q 023080          277 DEY  279 (287)
Q Consensus       277 ~~~  279 (287)
                      +..
T Consensus       319 ~~~  321 (398)
T PLN02772        319 DGL  321 (398)
T ss_pred             cCc
Confidence            653

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.75  E-value=3e-08  Score=83.81  Aligned_cols=120  Identities=16%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-cc----cHHHHHHH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGK-LV----SDEIIFNL  121 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-~~----~~~~~~~~  121 (287)
                      +...|..|++.|+|||||||++..+...+   +..+|+.|++-.. .    +....+........ ..    ...+...+
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~-~----p~~~~~~~~~~~~~~~~~~~~a~~~~~~~   85 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF-H----PDYDELLKADPDEASELTQKEASRLAEKL   85 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG-S----TTHHHHHHHHCCCTHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh-c----cchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            44688899999999999999999999987   7788999765322 1    11111111100000 00    01122333


Q ss_pred             HHHHHHhcccCCCccEEEeCCCCCHHHHH-HHHHh---cCccEEEEEecCHHHHHHHHhCCC
Q 023080          122 LSKRLEAGQAGGESGFILDGFPRTVKQAE-ILEEV---MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       122 l~~~l~~~~~~~~~g~Ildg~p~~~~~~~-~l~~~---~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      +...+..     ...+|+|+...+..... .++.+   +.--.++++.++++..+.|+..|.
T Consensus        86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred             HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence            3333443     46899999777666555 33332   323356788999999999998885

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.75  E-value=3e-08  Score=81.76  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCc-------------hHHHHHHHHhcCCcccHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGS-------------LSQQLSEIVNQGKLVSDEIIF  119 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~-------------~~~~i~~~l~~g~~~~~~~~~  119 (287)
                      .+|+|.|+|-|||||+++.|.+.+.-+  ++++|.+..........             .+....            .+.
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~~   69 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFR------------RLY   69 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHH------------HHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHH------------HHH
Confidence            478999999999999999999999654  78887776642221100             011111            111


Q ss_pred             HHHHHHHHhcccCCCccEEEeCCCCCHHH-HHHHHH-h-cCccEEEEEecCHHHHHHHHhCCC
Q 023080          120 NLLSKRLEAGQAGGESGFILDGFPRTVKQ-AEILEE-V-MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~-~~~l~~-~-~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..+...+...... +..+|+|+...+..+ .+.+.+ + +.+-++|-+.||.+++.+|-..|.
T Consensus        70 ~~~~~~iaa~a~a-G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg  131 (174)
T PF07931_consen   70 AAMHAAIAAMARA-GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG  131 (174)
T ss_dssp             HHHHHHHHHHHHT-T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence            1222222221111 578999987666554 445534 3 235577899999999999998875

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK07429 phosphoribulokinase; Provisional

Probab=98.74  E-value=3.1e-08  Score=89.74  Aligned_cols=39  Identities=38%  Similarity=0.500  Sum_probs=33.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLV   89 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~ll   89 (287)
                      ..++++|.|.|++||||||+++.|+..++   ..+++.|++.
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            35788999999999999999999999987   5677887764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.72  E-value=1.3e-07  Score=93.34  Aligned_cols=108  Identities=17%  Similarity=0.091  Sum_probs=65.0

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH----HH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI----IF  119 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~----~~  119 (287)
                      ....+|.+|+++|.|||||||+|+.|++++     ++.+++. |.+|..+..+              ..+.++.    +.
T Consensus       455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~--------------~~~~~~~r~~~~~  519 (632)
T PRK05506        455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRD--------------LGFSDADRVENIR  519 (632)
T ss_pred             HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCC--------------CCCCHHHHHHHHH
Confidence            344468899999999999999999999997     3466777 4455533321              1111111    11


Q ss_pred             HHH--HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHHH
Q 023080          120 NLL--SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       120 ~~l--~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~Rl  175 (287)
                      .+.  ...+...    +..+|+|.......+.+.+.....  +-.+|||+++.+++.+|.
T Consensus       520 ~l~~~a~~~~~~----G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        520 RVAEVARLMADA----GLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             HHHHHHHHHHhC----CCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence            111  1111111    356777764333344444444332  347899999999999993

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.71  E-value=1.6e-07  Score=85.35  Aligned_cols=34  Identities=35%  Similarity=0.455  Sum_probs=29.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC------CeeehhHHHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGV------PHIATGDLVR   90 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~------~~i~~d~llr   90 (287)
                      ++|+|+|||||||+++.|+..+..      .+++.||++.
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~   41 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP   41 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence            689999999999999999988753      4899999884

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG4639 Predicted kinase [General function prediction only]

Probab=98.69  E-value=2.4e-07  Score=73.74  Aligned_cols=111  Identities=21%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ..++++|+|||||||+++...  .+..+++++++=+..       |....+....   -.++.+.+.+...+.+.... +
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sq---k~~~~~~~~l~~~l~qrl~~-G   69 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQ---KNDELVWDILYKQLEQRLRR-G   69 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhcc---ccHHHHHHHHHHHHHHHHHc-C
Confidence            468899999999999998643  467889987764431       1111111111   12334444444444443333 5


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      .-.|+|..-...++...+...    +-...+|+++.|.+.+.+|-+.|
T Consensus        70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence            788999887666666555443    23567799999999999997643

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.68  E-value=9.9e-08  Score=82.46  Aligned_cols=28  Identities=36%  Similarity=0.437  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .++.+|.|.|++||||||+++.|+..+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4788999999999999999999998874

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.68  E-value=1.5e-07  Score=80.81  Aligned_cols=34  Identities=32%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLV   89 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~ll   89 (287)
                      +|.|.|++||||||+++.|+..+.       +.++++|++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            478999999999999999999883       3467777764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.64  E-value=5e-07  Score=73.53  Aligned_cols=111  Identities=20%  Similarity=0.220  Sum_probs=63.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCe-eehhHHHHHHHHcCCchHH-HHHHHHhcCCcccHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPH-IATGDLVREELASSGSLSQ-QLSEIVNQGKLVSDEIIFNLLSKR  125 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~-i~~d~llr~~~~~~~~~~~-~i~~~l~~g~~~~~~~~~~~l~~~  125 (287)
                      +.++..|.|+|.+||||||+|..|.++|   |... +--+|-+|..+..+-.+.. .-.+.+.         -...+.+.
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniR---------RvaevAkl   90 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIR---------RVAEVAKL   90 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHH---------HHHHHHHH
Confidence            4477889999999999999999999988   4432 2334667765543221111 1111111         11122333


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHHHHHH--hcCcc-EEEEEecCHHHHHHHH
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAEILEE--VMDID-LVVNLKLCEDVLLEKC  175 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~--~~~~d-~vi~L~~~~e~l~~Rl  175 (287)
                      +...     ..++|..|-........+.+  ++.-. +-||+++|.+++.+|=
T Consensus        91 l~da-----G~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          91 LADA-----GLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             HHHC-----CeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence            3332     35667776555443333322  23223 4599999999998774

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.64  E-value=2.9e-08  Score=83.51  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +|.|.|++||||||+|+.|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.62  E-value=1e-07  Score=66.47  Aligned_cols=23  Identities=35%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .|+|+|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK05439 pantothenate kinase; Provisional

Probab=98.61  E-value=1.6e-07  Score=84.23  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHHH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLVR   90 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~llr   90 (287)
                      ....|.+|.|.|+|||||||+|+.|++.++       +.++++|+++.
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            445788999999999999999999998663       45788888764

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.57  E-value=1.3e-06  Score=74.79  Aligned_cols=165  Identities=19%  Similarity=0.275  Sum_probs=82.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCC---------chHHHHHHHHhcCCcccHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSG---------SLSQQLSEIVNQGKLVSDEI  117 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~---------~~~~~i~~~l~~g~~~~~~~  117 (287)
                      ..+++|++.|.|+.|||++|+.|+..|   |  ..+++++++-|.......         ..+..+++.+.      .. 
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~-   82 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KE-   82 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HH-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HH-
Confidence            467889999999999999999999876   3  357899988877654311         11222222211      11 


Q ss_pred             HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEe--cCHHHHHH-HHhCCCcc-ccCCCccccc
Q 023080          118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLK--LCEDVLLE-KCLGRRMC-SQCGGNFNVA  191 (287)
Q Consensus       118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~--~~~e~l~~-Rl~~R~~~-~~~g~~y~~~  191 (287)
                      ..+-+...+...   +++--|+|+.-.|.+..+.+.....  .--++||+  |+++.+++ .+...... |    .|.- 
T Consensus        83 ~l~dl~~~l~~~---~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~sp----DY~~-  154 (222)
T PF01591_consen   83 ALEDLIEWLQEE---GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSP----DYKG-  154 (222)
T ss_dssp             HHHHHHHHHHTS-----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSG----GGTT-
T ss_pred             HHHHHHHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCc----cccc-
Confidence            122222333322   1467899999889888777655321  12455555  45555544 44332211 1    1110 


Q ss_pred             cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhc-CcEEEEeCC
Q 023080          192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNR-GKLLEFDLP  260 (287)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~-~~~~~id~~  260 (287)
                                                   ...++..+.+.+|++.|+..++|+.+-.+.. ..+..+|..
T Consensus       155 -----------------------------~~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g  195 (222)
T PF01591_consen  155 -----------------------------MDPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVG  195 (222)
T ss_dssp             -----------------------------S-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTT
T ss_pred             -----------------------------CCHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCC
Confidence                                         1112345677899999999999987222222 234456643

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.55  E-value=2.3e-06  Score=68.59  Aligned_cols=166  Identities=21%  Similarity=0.224  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCc-----hHHHHHHHHhcCCcc-cHHH------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGS-----LSQQLSEIVNQGKLV-SDEI------  117 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~-----~~~~i~~~l~~g~~~-~~~~------  117 (287)
                      ...+|+++||+|+||.|+.......+...   ++----+.|..-. +++     ....+...-.+|.+. +.+.      
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~a-g~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg   82 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADA-GGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG   82 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCC-CcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence            46789999999999999999998887321   1111011111111 111     112222222233221 1100      


Q ss_pred             HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080          118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKG  197 (287)
Q Consensus       118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~  197 (287)
                      +-..+...+..     +..+|..|.-.-+-++..   ...--++|.|.++++++.+|+..|+                  
T Consensus        83 ip~eId~wl~~-----G~vvl~NgSRa~Lp~arr---ry~~Llvv~ita~p~VLaqRL~~RG------------------  136 (192)
T COG3709          83 IPAEIDLWLAA-----GDVVLVNGSRAVLPQARR---RYPQLLVVCITASPEVLAQRLAERG------------------  136 (192)
T ss_pred             CchhHHHHHhC-----CCEEEEeccHhhhHHHHH---hhhcceeEEEecCHHHHHHHHHHhc------------------
Confidence            11223333443     244556554222222221   1112268999999999999999875                  


Q ss_pred             CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                                .++.+.|..||..-....       ...+.++.||+++.++..-++++..|.++
T Consensus       137 --------------------------REs~eeI~aRL~R~a~~~-------~~~~dv~~idNsG~l~~ag~~ll~~l~~~  183 (192)
T COG3709         137 --------------------------RESREEILARLARAARYT-------AGPGDVTTIDNSGELEDAGERLLALLHQD  183 (192)
T ss_pred             --------------------------cCCHHHHHHHHHhhcccc-------cCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence                                      456788888877643321       22567899999999999999999888754


Q ss_pred             h
Q 023080          278 E  278 (287)
Q Consensus       278 ~  278 (287)
                      .
T Consensus       184 ~  184 (192)
T COG3709         184 S  184 (192)
T ss_pred             c
Confidence            3

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.54  E-value=1.5e-06  Score=76.89  Aligned_cols=106  Identities=19%  Similarity=0.154  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHHHHHcCC----chHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVREELASSG----SLSQQLSEIVNQGKLVSDEIIFNLLSKR  125 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~~~~~~~----~~~~~i~~~l~~g~~~~~~~~~~~l~~~  125 (287)
                      +.|+|+|.|||||||+|+.|++.+     .+.+++.+++ .  +....    ...+.++           ..+...+...
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~-~--~~~~~y~~~~~Ek~~R-----------~~l~s~v~r~   67 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL-G--IDRNDYADSKKEKEAR-----------GSLKSAVERA   67 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH-H---TTSSS--GGGHHHHH-----------HHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc-c--cchhhhhchhhhHHHH-----------HHHHHHHHHh
Confidence            478999999999999999999975     2344554333 2  11111    0011111           1122233333


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHH---HHHHH-hcCccEEEEEecCHHHHHHHHhCCC
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQA---EILEE-VMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~---~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      +..     ..-+|+|+..--....   -.+.+ ......+||++++.+.+++|=..|.
T Consensus        68 ls~-----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~  120 (270)
T PF08433_consen   68 LSK-----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP  120 (270)
T ss_dssp             HTT------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred             hcc-----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence            332     3678999732222222   22222 2336688999999999999998874

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.53  E-value=2.1e-07  Score=77.38  Aligned_cols=36  Identities=33%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVRE   91 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~   91 (287)
                      +|.|.|++||||||+|+.|++.+     ++.+++.|++.+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            47899999999999999999996     4578999999874

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.53  E-value=1.4e-07  Score=83.55  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLV   89 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~ll   89 (287)
                      +|.|+|++||||||+++.|+..+   +..+++.|++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            47899999999999999999887   45678887664

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.50  E-value=5.1e-06  Score=73.06  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      +|+|+|.+||||||..+.|.+ +|+..++-                           +|..++..++............-
T Consensus         3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~~   54 (284)
T PF03668_consen    3 LVIITGLSGAGKSTALRALED-LGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEKV   54 (284)
T ss_pred             EEEEeCCCcCCHHHHHHHHHh-cCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCceE
Confidence            688999999999999998854 78776653                           23333333333222111111123


Q ss_pred             cEEEeCC----CCCHHH-HHHHHHhcCccEEEEEecCHHHHHHHHh-CCCcccc
Q 023080          136 GFILDGF----PRTVKQ-AEILEEVMDIDLVVNLKLCEDVLLEKCL-GRRMCSQ  183 (287)
Q Consensus       136 g~Ildg~----p~~~~~-~~~l~~~~~~d~vi~L~~~~e~l~~Rl~-~R~~~~~  183 (287)
                      .+++|--    .....+ ...+...+..--+|||+++++++++|.. .||.||.
T Consensus        55 Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL  108 (284)
T PF03668_consen   55 AIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPL  108 (284)
T ss_pred             EEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCC
Confidence            5677732    111111 1122222223358999999999999997 4666763

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.50  E-value=3.6e-07  Score=81.38  Aligned_cols=40  Identities=28%  Similarity=0.277  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLVR   90 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~llr   90 (287)
                      ...|.+|.|.|++||||||+++.|+..+.       +.++++|.+..
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            45788999999999999999998877663       34567766553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PHA00729 NTP-binding motif containing protein

Probab=98.44  E-value=1.8e-06  Score=73.78  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ..|+|+|+||+||||+|..|+++++..  .+..++....   .           ......++.+.+...+....... ..
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d---~-----------~~~~~fid~~~Ll~~L~~a~~~~-~~   82 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ---Y-----------VQNSYFFELPDALEKIQDAIDND-YR   82 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh---c-----------CCcEEEEEHHHHHHHHHHHHhcC-CC
Confidence            479999999999999999999987522  2222111110   0           00111222333334343333221 11


Q ss_pred             CCccEEEeCCCCCHH---HH-H------HHHHhc--CccEEEEEecCHHHHHHHHhCCCc
Q 023080          133 GESGFILDGFPRTVK---QA-E------ILEEVM--DIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~---~~-~------~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                       ..-+|+|++.....   +. +      .+....  .+++++++.++++.+.+++..|+.
T Consensus        83 -~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~  141 (226)
T PHA00729         83 -IPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW  141 (226)
T ss_pred             -CCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence             12368997321111   11 0      111111  378899999999999999999863

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=7.9e-06  Score=70.14  Aligned_cols=47  Identities=32%  Similarity=0.472  Sum_probs=40.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS   95 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~   95 (287)
                      ..+.+|.+|+|-|+||.||||+|..||.++|..++-..|.+|+.+..
T Consensus        84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~  130 (299)
T COG2074          84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRK  130 (299)
T ss_pred             hccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHH
Confidence            44568999999999999999999999999999876666888887754

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.43  E-value=1.4e-06  Score=83.77  Aligned_cols=37  Identities=19%  Similarity=0.381  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDL   88 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~l   88 (287)
                      .++.+|.|.|++||||||+++.|+..+ +..+|++|+.
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            356889999999999999999999987 4457888775

>PLN02165 adenylate isopentenyltransferase

Probab=98.41  E-value=3.1e-06  Score=76.38  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      .++.+|+|+||+||||||++..||+.++..+++.|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            3455899999999999999999999999999999876

>PRK15453 phosphoribulokinase; Provisional

Probab=98.33  E-value=5.7e-06  Score=72.92  Aligned_cols=39  Identities=15%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVR   90 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr   90 (287)
                      .++++|.|+|.|||||||+++.|++.++     ..+++.|++.+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4678999999999999999999998774     45677776654

>PRK09169 hypothetical protein; Validated

Probab=98.17  E-value=3e-05  Score=83.15  Aligned_cols=107  Identities=11%  Similarity=-0.051  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ..|+|+|++|+||||+++.|+..+++.++++|..+.+      ..++.|.+++.... +..+.....+.+.+. .     
T Consensus      2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek------s~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-~----- 2177 (2316)
T PRK09169       2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK------KIGKKIARIQALRG-LSPEQAAARVRDALR-W----- 2177 (2316)
T ss_pred             cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH------HhCCCHHHHHHhcC-chHHHHHHHHHHHhc-C-----
Confidence            4689999999999999999999999999999998877      46677888776544 666777777766553 1     


Q ss_pred             ccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          135 SGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       135 ~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                       .+||. |  .+........|...+   ++||+..+.+++.+|+.+.
T Consensus      2178 -~vVLSTGGGav~~~enr~~L~~~G---lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2178 -EVVLPAEGFGAAVEQARQALGAKG---LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             -CeEEeCCCCcccCHHHHHHHHHCC---EEEEEECCHHHHHHHhccC
Confidence             33443 2  344444455555544   7999999999999999654

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.10  E-value=3.3e-05  Score=64.23  Aligned_cols=121  Identities=18%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHH----cCC-------------chHHHHHHHHhcCCccc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELA----SSG-------------SLSQQLSEIVNQGKLVS  114 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~----~~~-------------~~~~~i~~~l~~g~~~~  114 (287)
                      +..+|.|.|...|||||||+.|.+.| |+.+|+=||+....-.    .+.             .....+.-.+.+..-.+
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            34678899999999999999999988 7788888887754221    010             01112222333222121


Q ss_pred             H--HHHHH-----HHHHHHHhcccCCCccEEEeCCCCC--HHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080          115 D--EIIFN-----LLSKRLEAGQAGGESGFILDGFPRT--VKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       115 ~--~~~~~-----~l~~~l~~~~~~~~~g~Ildg~p~~--~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                      +  +.+..     -.....+..... ..-+|+|||-..  ..+..      ..|..|++..+-+++.+|-..|..
T Consensus        83 ~ar~~~v~~~~~~~~~~~~q~~~~~-~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~~Rt~  150 (225)
T KOG3308|consen   83 EAREHLVSYANFEHYAQQFQIKAYK-NHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRREARTY  150 (225)
T ss_pred             hHhhhhhhhhHHHHHhhhcCccccc-CcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhccccc
Confidence            1  11111     011111111122 356899997432  12211      256789999999999999888753

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.09  E-value=0.00011  Score=59.07  Aligned_cols=111  Identities=12%  Similarity=0.193  Sum_probs=62.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      |...++-||.||||||+...+-..+  ++.+++.|.+..+ +.+..+....++..         ......+...+..   
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A~---------r~ai~~i~~~I~~---   68 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQAA---------RVAIDRIARLIDL---   68 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHHH---------HHHHHHHHHHHHc---
Confidence            4567889999999999877665444  5678899776554 33222322222221         1122223333333   


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhcCcc---EEEEEec-CHHHHHHHHhCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVMDID---LVVNLKL-CEDVLLEKCLGRR  179 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d---~vi~L~~-~~e~l~~Rl~~R~  179 (287)
                        +.+|..+.........+.++......   ...|+-+ +.|..++|++.|-
T Consensus        69 --~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RV  118 (187)
T COG4185          69 --GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRV  118 (187)
T ss_pred             --CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence              46777776555555555554432212   2223333 5678999998874

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.08  E-value=0.00022  Score=61.64  Aligned_cols=100  Identities=20%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      +|+|+|.+||||||-.+.|.+ +|+..++-                           +|.+++-.++.-..........-
T Consensus         3 lvIVTGlSGAGKsvAl~~lED-lGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~kv   54 (286)
T COG1660           3 LVIVTGLSGAGKSVALRVLED-LGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITKV   54 (286)
T ss_pred             EEEEecCCCCcHHHHHHHHHh-cCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCceE
Confidence            588999999999999998854 67666542                           23333333333222111111134


Q ss_pred             cEEEeC----CCCCHHHH-HHHHHhcCcc-EEEEEecCHHHHHHHHh-CCCcccc
Q 023080          136 GFILDG----FPRTVKQA-EILEEVMDID-LVVNLKLCEDVLLEKCL-GRRMCSQ  183 (287)
Q Consensus       136 g~Ildg----~p~~~~~~-~~l~~~~~~d-~vi~L~~~~e~l~~Rl~-~R~~~~~  183 (287)
                      .+++|-    |+....+. ..+......+ -++||+++.+++++|.. .||.||.
T Consensus        55 Av~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL  109 (286)
T COG1660          55 AVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPL  109 (286)
T ss_pred             EEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCC
Confidence            677883    22222221 2233221122 48899999999999997 4667763

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.08  E-value=3.2e-06  Score=65.72  Aligned_cols=29  Identities=41%  Similarity=0.734  Sum_probs=25.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      |+|.||||+||||+++.+++.++.+++.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i   29 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEI   29 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence            68999999999999999999999876544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PHA03136 thymidine kinase; Provisional

Probab=98.05  E-value=0.00016  Score=66.18  Aligned_cols=25  Identities=36%  Similarity=0.282  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +-.+|.|.|+.|+||||+++.|.+.
T Consensus        35 ~~~rvyieG~~gvGKTT~~~~l~~~   59 (378)
T PHA03136         35 RLVLLYLDGPFGTGKTTTAKLLMEM   59 (378)
T ss_pred             eeEEEEEECCCcCCHHHHHHHHHhc
Confidence            5578999999999999999999873

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2.5e-05  Score=74.61  Aligned_cols=120  Identities=21%  Similarity=0.303  Sum_probs=73.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh--HHHHHHHHcCCchHHHHHHHHhcCCcc-----------------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG--DLVREELASSGSLSQQLSEIVNQGKLV-----------------  113 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d--~llr~~~~~~~~~~~~i~~~l~~g~~~-----------------  113 (287)
                      +|.=|+|.||||||||.+|+.||.++|++++++.  +++..   -.++..+.+++.|.+-...                 
T Consensus       222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG---vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkR  298 (802)
T KOG0733|consen  222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG---VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKR  298 (802)
T ss_pred             CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc---cCcccHHHHHHHHHHHhccCCeEEEeecccccccch
Confidence            3445889999999999999999999999998762  22211   1234556666666543211                 


Q ss_pred             ---cHHHHHHHHHHHHHh---cccC--CCccEEEeCC---CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080          114 ---SDEIIFNLLSKRLEA---GQAG--GESGFILDGF---PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       114 ---~~~~~~~~l~~~l~~---~~~~--~~~g~Ildg~---p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                         ..++..+++.+.+..   ....  .+.++++=|.   |..++  -.|.+.+.+|.=|.|.+|.++..+++.+
T Consensus       299 e~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRRaGRFdrEI~l~vP~e~aR~~IL~  371 (802)
T KOG0733|consen  299 EEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRRAGRFDREICLGVPSETAREEILR  371 (802)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhccccccceeeecCCchHHHHHHHH
Confidence               112222333222221   1111  1356666553   33333  3466778899999999999998887754

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.97  E-value=5.5e-05  Score=62.81  Aligned_cols=115  Identities=21%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch-------HHHHH--HH---HhcC-------CcccHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL-------SQQLS--EI---VNQG-------KLVSDE  116 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~-------~~~i~--~~---l~~g-------~~~~~~  116 (287)
                      +|.|.|..|||++|+|+.||++||+++++- +++.......+-.       .+...  ..   +..+       ....++
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            588999999999999999999999999998 7776643321110       01100  11   1111       111222


Q ss_pred             HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       117 ~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      .+.....+.+.....  ..++|+.|.-..    -.+.. .+..+-|+|.+|.+..++|++++
T Consensus        80 ~~~~~~~~~i~~la~--~~~~Vi~GR~a~----~il~~-~~~~l~V~i~A~~~~Rv~ri~~~  134 (179)
T PF13189_consen   80 KIFRAQSEIIRELAA--KGNCVIVGRCAN----YILRD-IPNVLHVFIYAPLEFRVERIMER  134 (179)
T ss_dssp             HHHHHHHHHHHHHHH-----EEEESTTHH----HHTTT--TTEEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc--cCCEEEEecCHh----hhhCC-CCCeEEEEEECCHHHHHHHHHHH
Confidence            333333333333211  146777663211    01111 11236799999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.93  E-value=5.5e-05  Score=75.27  Aligned_cols=33  Identities=18%  Similarity=0.419  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ....|++.|.||+||||+++.|++.+++..+++
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~  246 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS  246 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence            456889999999999999999999986554443

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.91  E-value=1.2e-05  Score=66.19  Aligned_cols=34  Identities=32%  Similarity=0.370  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDL   88 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~l   88 (287)
                      +.|+|+|+|||||||+|..|+..++  +.++.+...
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~   37 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP   37 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCC
Confidence            4789999999999999999999987  445655443

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.89  E-value=4.1e-05  Score=60.73  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      |+|+||+||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.89  E-value=1.4e-05  Score=69.65  Aligned_cols=30  Identities=30%  Similarity=0.303  Sum_probs=26.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .....|.+|.|.|++|+||||+|+.|+..+
T Consensus        77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll  106 (283)
T COG1072          77 NNQQRPFIIGIAGSVAVGKSTTARILQALL  106 (283)
T ss_pred             CCCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence            345688999999999999999999998876

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.88  E-value=1.4e-05  Score=71.83  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      .+..|+|+||+||||||+|..|++.++..+|+.|..
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            346899999999999999999999999999988773

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=97.88  E-value=0.00019  Score=57.04  Aligned_cols=44  Identities=39%  Similarity=0.493  Sum_probs=32.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---C-CCeeehhHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---G-VPHIATGDLVREELA   94 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g-~~~i~~d~llr~~~~   94 (287)
                      ..+++.|.|+|.+||||||+|-.|.+.+   | ..++--+|-+|..++
T Consensus        28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN   75 (207)
T KOG0635|consen   28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN   75 (207)
T ss_pred             cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence            4578899999999999999999999877   2 334444455555443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.87  E-value=0.00016  Score=67.29  Aligned_cols=92  Identities=23%  Similarity=0.321  Sum_probs=51.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcc-cHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL----G--VPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLV-SDEIIFNLLSK  124 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l----g--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~-~~~~~~~~l~~  124 (287)
                      ++.+|+|+||+||||||++..||..+    |  +.+++. |..|....      ..+..+.+. |..+ .... ...+..
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~------eQLk~yAe~lgvp~~~~~~-~~~l~~  293 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAI------EQLKRYADTMGMPFYPVKD-IKKFKE  293 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHH------HHHHHHHHhcCCCeeehHH-HHHHHH
Confidence            46788999999999999999999765    2  223444 55554211      123333222 1111 1111 223333


Q ss_pred             HHHhcccCCCccEEEe--CCC-CCHHHHHHHHHh
Q 023080          125 RLEAGQAGGESGFILD--GFP-RTVKQAEILEEV  155 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ild--g~p-~~~~~~~~l~~~  155 (287)
                      .+....   ...+++|  |++ ++..+.+.|..+
T Consensus       294 ~l~~~~---~D~VLIDTaGr~~rd~~~l~eL~~~  324 (432)
T PRK12724        294 TLARDG---SELILIDTAGYSHRNLEQLERMQSF  324 (432)
T ss_pred             HHHhCC---CCEEEEeCCCCCccCHHHHHHHHHH
Confidence            343221   3579999  664 667777776653

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.86  E-value=9.3e-05  Score=65.16  Aligned_cols=28  Identities=36%  Similarity=0.600  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+....++|.||||+||||+|+.+++.+
T Consensus        39 ~~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        39 SKQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            3455678999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.0001  Score=71.13  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..+|.-|++.|||||||||+|+.||..-++.++++
T Consensus       465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv  499 (693)
T KOG0730|consen  465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV  499 (693)
T ss_pred             CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence            35677799999999999999999999988888776

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.81  E-value=1.4e-05  Score=65.14  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS   95 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~   95 (287)
                      +|+|+|++||||||+++.|++. |++++  .+..+..+..
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~   37 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE   37 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence            4899999999999999999998 88877  4666665543

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.79  E-value=0.00024  Score=67.97  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .|.-|+|.||||||||++|+.+|..++.+++.+
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            455689999999999999999999999987765

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.77  E-value=0.00031  Score=65.61  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      ...+|+|+|++||||||+++.|++.||...+
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            4468999999999999999999999998754

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.74  E-value=0.0002  Score=62.74  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVR   90 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr   90 (287)
                      +|.|+|++||||||+++.|++.++     ..+|+.|++.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            478999999999999999998874     45788777665

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN02840 tRNA dimethylallyltransferase

Probab=97.74  E-value=3.9e-05  Score=71.41  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      ++++|+|.||+||||||++..|+++++..+|+.|.
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            55689999999999999999999999988887765

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=97.73  E-value=0.0013  Score=56.65  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..|++|+|.|..||||+.+.+.|.+.++-.++.+
T Consensus        29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v   62 (230)
T TIGR03707        29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARV   62 (230)
T ss_pred             CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEE
Confidence            3689999999999999999999999996555444

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.71  E-value=3.8e-05  Score=61.81  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .++.|+|+|+||+||||++..+++.+.-.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~   32 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREK   32 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence            56899999999999999999999888433

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.71  E-value=3.5e-05  Score=71.57  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      .|..|+|+||||+||||+|+.||+.++.+++.++.
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            45789999999999999999999999999888763

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.0001  Score=65.68  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ..|++.||||+|||++|+.||+++-+
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSI  203 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSI  203 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhhee
Confidence            46889999999999999999999854

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.70  E-value=4.2e-05  Score=65.22  Aligned_cols=31  Identities=35%  Similarity=0.479  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ...++|.||||+||||+|+.+|+.++..+..
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~   80 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKI   80 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence            4568999999999999999999999887643

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>CHL00181 cbbX CbbX; Provisional

Probab=97.69  E-value=0.00018  Score=64.32  Aligned_cols=28  Identities=32%  Similarity=0.618  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.++..++|.||||+||||+|+.+++.+
T Consensus        56 ~~~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         56 SNPGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3456779999999999999999999875

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.69  E-value=0.00018  Score=60.64  Aligned_cols=120  Identities=19%  Similarity=0.244  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH-HH--cCCchHH---------HHHHHHhcCCcccHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE-LA--SSGSLSQ---------QLSEIVNQGKLVSDEIIFNLL  122 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~-~~--~~~~~~~---------~i~~~l~~g~~~~~~~~~~~l  122 (287)
                      .+++|.||+|+|||.+|-.||+++|.++|+.|.+.--. +.  .+.+...         .....+..|. ++.+.....+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L   80 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL   80 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence            36789999999999999999999999999987654221 00  0000000         1123345555 4444466666


Q ss_pred             HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC----ccEEEEEecCHH-HHHHHHhCC
Q 023080          123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD----IDLVVNLKLCED-VLLEKCLGR  178 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~----~d~vi~L~~~~e-~l~~Rl~~R  178 (287)
                      ...+.....  +.++|++|--.++-..- .....+    ...+..+.++.+ .-+.|..+|
T Consensus        81 i~~v~~~~~--~~~~IlEGGSISLl~~m-~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   81 ISEVNSYSA--HGGLILEGGSISLLNCM-AQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHHTTTT--SSEEEEEE--HHHHHHH-HH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHHhccc--cCceEEeCchHHHHHHH-HhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            666666544  47999998543333222 122222    235667777664 455555544

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.67  E-value=3.9e-05  Score=59.33  Aligned_cols=28  Identities=39%  Similarity=0.591  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +..++|.|||||||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            3578999999999999999999988554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.66  E-value=0.00015  Score=61.74  Aligned_cols=176  Identities=19%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CCc----hHHHHHHHHhcCCcccHHHHHHHH----
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SGS----LSQQLSEIVNQGKLVSDEIIFNLL----  122 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~~----~~~~i~~~l~~g~~~~~~~~~~~l----  122 (287)
                      .-|+|.||.|+||+|+.++|.+.++. ..+++....+.....   +..    ....+..+..++.++.........    
T Consensus        38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts  117 (231)
T KOG0707|consen   38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS  117 (231)
T ss_pred             ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence            34889999999999999999999974 445544444331100   000    112233333333332221111000    


Q ss_pred             HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEE-EEEe-cCHHHHHHHHhCCCccccCCCccccccccccCCCC
Q 023080          123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLV-VNLK-LCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNG  200 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~v-i~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~  200 (287)
                      ....+..... ++..++|-.-+.....    ....+|.+ +|+. .+...+.+|+..|.                     
T Consensus       118 i~av~~~~~~-gk~~ildId~qg~~~i----~~~~~~~i~i~~~pps~~~~e~rl~~rg---------------------  171 (231)
T KOG0707|consen  118 IAAVQRLMLS-GKVCILDIDLQGVQPI----RATSLDAIYIFIKPPSIKILEERLRARG---------------------  171 (231)
T ss_pred             HHHHHHHHhc-CCcceeehhhcCceee----ecCCCceEEEEecCCcchhHHHHhhccC---------------------
Confidence            0111111111 3455555322211111    01124433 3443 45567777777663                     


Q ss_pred             CCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhh
Q 023080          201 NPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYE  280 (287)
Q Consensus       201 ~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~  280 (287)
                                             .++++.+.+|+..-+......++-+.  ..+. +.+....++...++...+..++.+
T Consensus       172 -----------------------te~~~~l~~r~~sa~~e~~~~~~~g~--~d~~-~~ns~~lee~~kel~~~~~~~~~~  225 (231)
T KOG0707|consen  172 -----------------------TETEESLLKRLKSAEEEFEILENSGS--FDLV-IVNSDRLEEAYKELEIFISSDDKE  225 (231)
T ss_pred             -----------------------cchHHHHHHHHHhhhhhhccccCCcc--ccce-ecCCCchhhhhhhhhhhhhHHHHh
Confidence                                   56778888888855444443333111  1122 333368899999998888776654


Q ss_pred             hh
Q 023080          281 EK  282 (287)
Q Consensus       281 ~~  282 (287)
                      ..
T Consensus       226 ~~  227 (231)
T KOG0707|consen  226 SH  227 (231)
T ss_pred             hh
Confidence            43

>PRK06761 hypothetical protein; Provisional

Probab=97.64  E-value=4.7e-05  Score=67.52  Aligned_cols=30  Identities=33%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      +++|+|+|+|||||||+++.|+++++...+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~   32 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGI   32 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence            357999999999999999999999875433

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.63  E-value=7.5e-05  Score=63.65  Aligned_cols=39  Identities=23%  Similarity=0.125  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehhHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPH-IATGDLVREELA   94 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~-i~~d~llr~~~~   94 (287)
                      |+|+|+|.|||||||+++.+.+. |.++ +++.+.++..+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~   40 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA   40 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence            57999999999999999999765 6666 999999988664

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.62  E-value=5.2e-05  Score=70.48  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      .|..|+|+||||+||||+|+.|++.++.+++.+|.
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            35789999999999999999999999998887754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.62  E-value=5.9e-05  Score=59.60  Aligned_cols=29  Identities=41%  Similarity=0.669  Sum_probs=25.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      |+|.|+||+|||++++.|++.++.+++.+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i   30 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIRI   30 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence            78999999999999999999998776543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.61  E-value=6.1e-05  Score=71.28  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      ....+.+|+|+||+||||||++..||++++..+|+.|.
T Consensus        18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            33466689999999999999999999999999999874

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.60  E-value=0.0002  Score=55.65  Aligned_cols=84  Identities=20%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh--------CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCc--ccHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL--------GVPHIATGDLVREELASSGSLSQQLSEIVNQGKL--VSDEIIFNLL  122 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l--------g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~--~~~~~~~~~l  122 (287)
                      ....++|.|++|+|||++++.+++.+        +..++.+. .-..  .....+...+...+.....  .+.......+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~   79 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSS--RTPRDFAQEILEALGLPLKSRQTSDELRSLL   79 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHH--SSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCC--CCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence            34568899999999999999999987        44333221 1111  0011223334444433222  1334444666


Q ss_pred             HHHHHhcccCCCccEEEeCC
Q 023080          123 SKRLEAGQAGGESGFILDGF  142 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~  142 (287)
                      .+.+.....   ..+|||.+
T Consensus        80 ~~~l~~~~~---~~lviDe~   96 (131)
T PF13401_consen   80 IDALDRRRV---VLLVIDEA   96 (131)
T ss_dssp             HHHHHHCTE---EEEEEETT
T ss_pred             HHHHHhcCC---eEEEEeCh
Confidence            666666522   26788874

>PF13173 AAA_14: AAA domain

Probab=97.58  E-value=0.00061  Score=53.19  Aligned_cols=96  Identities=21%  Similarity=0.254  Sum_probs=56.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ..++|.||.|+||||+++.+++.+.    +.+++.++.-.....             .     + + ....+.+..... 
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-------------~-----~-~-~~~~~~~~~~~~-   61 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-------------D-----P-D-LLEYFLELIKPG-   61 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-------------h-----h-h-hHHHHHHhhccC-
Confidence            4688999999999999999998875    667777555332110             0     0 0 112222221111 


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHH
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEK  174 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~R  174 (287)
                         ...++||-+-....+...+....  .++.-|++..+....+.+
T Consensus        62 ---~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   62 ---KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK  104 (128)
T ss_pred             ---CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence               35688997644444444444332  256778888777666543

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.58  E-value=6e-05  Score=67.07  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      .|+|+||+|||||+++..|++.++..+|+.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence            378999999999999999999999999998773

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00035  Score=63.11  Aligned_cols=46  Identities=22%  Similarity=0.340  Sum_probs=36.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSG   97 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~   97 (287)
                      .+|.=|++.||||+|||-+|+..|.+.+..+|.+  ++++++.+-.+.
T Consensus       183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa  230 (406)
T COG1222         183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA  230 (406)
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence            3566689999999999999999999999887654  566666554433

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=97.56  E-value=0.0029  Score=55.59  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..|++|+|.|..||||+.+.+.|.+.++-.++.+
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V   87 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQV   87 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEE
Confidence            4689999999999999999999999986555444

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.55  E-value=0.00016  Score=66.00  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLV   89 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~ll   89 (287)
                      -..|..+.|.||||+|||.+|+.+|+.+|+.+|  +..+++
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~  185 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE  185 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence            457788899999999999999999999988755  445554

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.52  E-value=9.9e-05  Score=67.38  Aligned_cols=28  Identities=29%  Similarity=0.287  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      +...++|.|||||||||+++.|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4567899999999999999999999865

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.52  E-value=0.0018  Score=61.75  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=28.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ...|++|+|.|..||||+++.++|.+.++-..+.
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~   70 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIE   70 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccE
Confidence            3588999999999999999999999998544433

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK14974 cell division protein FtsY; Provisional

Probab=97.50  E-value=0.00043  Score=63.06  Aligned_cols=27  Identities=37%  Similarity=0.629  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|.+|+|+|++|+||||.+..|+..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367899999999999999888888765

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.49  E-value=0.00014  Score=57.35  Aligned_cols=29  Identities=28%  Similarity=0.287  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .+.+|+|.|+.||||||+++.+++.+|..
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            45689999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PLN02796 D-glycerate 3-kinase

Probab=97.45  E-value=0.00012  Score=66.49  Aligned_cols=38  Identities=16%  Similarity=0.131  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLV   89 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~ll   89 (287)
                      .+|.+|.|.|++||||||+++.|...+.     ...++.|++.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4778999999999999999999998874     3456776654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.43  E-value=0.0014  Score=63.02  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..|.-++|.||||||||++++.||...+++++.+
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            3455689999999999999999999998887755

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.40  E-value=0.00062  Score=60.78  Aligned_cols=26  Identities=38%  Similarity=0.652  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +...++|.||||+||||+|+.+++.+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            44579999999999999998888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.37  E-value=0.00017  Score=65.16  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ..|+|.|+||+||||+++.||+.+|++++.
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            358999999999999999999999988763

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.37  E-value=0.00024  Score=55.43  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL---GVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~   85 (287)
                      ...++|.|+||+||||+++.++..+   +..++..
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            3468899999999999999999987   5555443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0016  Score=57.69  Aligned_cols=122  Identities=18%  Similarity=0.221  Sum_probs=67.1

Q ss_pred             CCCe-EEEEEcCCCCCHHHHHHHHHHHhCCCe--eehhHHHHHHHHcCCchHHHHHHHHhcCCc----------------
Q 023080           52 DRNV-QWVFLGCPGVGKGTYASRLSKFLGVPH--IATGDLVREELASSGSLSQQLSEIVNQGKL----------------  112 (287)
Q Consensus        52 ~~~~-~Ivi~G~pGSGKTTla~~La~~lg~~~--i~~d~llr~~~~~~~~~~~~i~~~l~~g~~----------------  112 (287)
                      .+|. -|++.||||+|||.+|+..|..-+-.+  ++.+|++.+.+.....+-+.+-++-.+.++                
T Consensus       163 R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~  242 (439)
T KOG0739|consen  163 RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS  242 (439)
T ss_pred             CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC
Confidence            3443 488999999999999999999887655  566788887665443333333333222221                


Q ss_pred             -ccHHHHHHHHHHHHHhc--ccCCCccEEEeC---CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080          113 -VSDEIIFNLLSKRLEAG--QAGGESGFILDG---FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       113 -~~~~~~~~~l~~~l~~~--~~~~~~g~Ildg---~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                       -..+...++--+.+.+-  .-..+.|+++=|   .|+.++++-.-    .++--||+.+|......++-+
T Consensus       243 enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR----RFekRIYIPLPe~~AR~~MF~  309 (439)
T KOG0739|consen  243 ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR----RFEKRIYIPLPEAHARARMFK  309 (439)
T ss_pred             CCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH----HhhcceeccCCcHHHhhhhhe
Confidence             00111111111111111  111134655544   56766654221    134567888888877777654

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.36  E-value=0.0002  Score=66.81  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+|..|+|.||||+|||++|+.++..++..++.+
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v  196 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  196 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence            3556799999999999999999999998776543

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.36  E-value=0.0047  Score=50.10  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=28.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLG-VPHIATGDL   88 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~l   88 (287)
                      |+=++.+||||||++..|+.-|| +-|+..|++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            44478999999999999999999 999988776

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.33  E-value=0.001  Score=58.94  Aligned_cols=27  Identities=33%  Similarity=0.540  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++|+||||.+..||..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            456788899999999999999999877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.33  E-value=0.0002  Score=66.56  Aligned_cols=39  Identities=18%  Similarity=0.174  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLV   89 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~ll   89 (287)
                      ..+|.+|.|.|+.||||||+++.|...+.     ...|+.|++.
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            34789999999999999999999987662     4567777765

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.32  E-value=0.00064  Score=58.56  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      .|++|+|.|..||||+.+.+.|.+.++-.++
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~   60 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWLDPRGF   60 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS-GGGE
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhCCCCee
Confidence            5589999999999999999999988854333

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.32  E-value=0.00016  Score=66.11  Aligned_cols=31  Identities=26%  Similarity=0.312  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .-.+|.||||+||||+|+.||...+..+..+
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~   79 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEAL   79 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence            3467899999999999999999999887655

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.31  E-value=0.00055  Score=59.42  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      -|..|+|.||||+|||.+|+.||...+.+++.+
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~v  182 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV  182 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence            566899999999999999999999999888766

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=97.31  E-value=0.018  Score=48.03  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=21.3

Q ss_pred             CccEEEEEecCHHHHHHHHhCCC
Q 023080          157 DIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       157 ~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+|.+|||.++++++.+|+..|.
T Consensus       153 ~~dgiIYLrasPetc~~Ri~~R~  175 (244)
T KOG4235|consen  153 SLDGIIYLRASPETCYKRIYLRA  175 (244)
T ss_pred             ccceEEEeecChHHHHHHHHHHh
Confidence            48999999999999999999885

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.30  E-value=0.002  Score=65.07  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .|.-|+|.||||||||++++.||..++..++.+
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v  518 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAV  518 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            445689999999999999999999998887755

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0037  Score=57.25  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      -|++.||||+|||-+|+.+|...|..++++
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV  276 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV  276 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence            478999999999999999999999888765

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.29  E-value=0.00025  Score=58.29  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .|+|+|+||+||||+.+.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            48899999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0012  Score=65.41  Aligned_cols=131  Identities=15%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             cccccccccCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCCchHHHHHHHHh---------
Q 023080           40 FQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSGSLSQQLSEIVN---------  108 (287)
Q Consensus        40 ~~~~~~~~~~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~~~~~~i~~~l~---------  108 (287)
                      -||..+..... +.|.=++|+||||+|||-+|+.+|..=|+|++++  .+++.-....+   ...+++++.         
T Consensus       331 KNP~~Y~~lGA-KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~---asrvr~lf~~ar~~aP~i  406 (774)
T KOG0731|consen  331 KNPEQYQELGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG---ASRVRDLFPLARKNAPSI  406 (774)
T ss_pred             cCHHHHHHcCC-cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc---hHHHHHHHHHhhccCCeE
Confidence            34444443333 3455588999999999999999999999999876  33332211111   111111111         


Q ss_pred             ------------c-C-----CcccHHHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHH-HHHHHhcCccEEEEEecCHH
Q 023080          109 ------------Q-G-----KLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQA-EILEEVMDIDLVVNLKLCED  169 (287)
Q Consensus       109 ------------~-g-----~~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~-~~l~~~~~~d~vi~L~~~~e  169 (287)
                                  + |     ..-..+...+.+.-.+.....  +.++|+.+.....+.. ..+-+.+.+|..|+++.|..
T Consensus       407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~  484 (774)
T KOG0731|consen  407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDV  484 (774)
T ss_pred             EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccCCccccCHHhcCCCccccceeccCCch
Confidence                        1 1     111223333333333333332  3567776543332221 23445566899999999886


Q ss_pred             HHHHHHh
Q 023080          170 VLLEKCL  176 (287)
Q Consensus       170 ~l~~Rl~  176 (287)
                      .-...+.
T Consensus       485 ~~r~~i~  491 (774)
T KOG0731|consen  485 KGRASIL  491 (774)
T ss_pred             hhhHHHH
Confidence            6555553

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.00034  Score=62.60  Aligned_cols=37  Identities=27%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLV   89 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ll   89 (287)
                      .+..|+|+||.+||||-+|-.||+++|..+||+|...
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ   38 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ   38 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence            3567999999999999999999999999999997754

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.28  E-value=0.0003  Score=65.96  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      ...|+|.|||||||||+|+.|++.++.+++.++
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence            356899999999999999999999998887663

>PF13245 AAA_19: Part of AAA domain

Probab=97.27  E-value=0.00033  Score=49.67  Aligned_cols=25  Identities=40%  Similarity=0.683  Sum_probs=18.1

Q ss_pred             CeEEEEEcCCCCCHH-HHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKG-TYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKT-Tla~~La~~l   78 (287)
                      ...++|.|||||||| |+++.++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            345677999999999 5556555544

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.26  E-value=0.00032  Score=65.52  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+|.-|+|.||||||||++++.+|..++..++.+
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            3566789999999999999999999998877654

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.26  E-value=0.00033  Score=64.75  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +|..++|.||||+|||++++.++..++..++.+
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            456799999999999999999999998877654

Many proteins may score above the trusted cutoff because an internal

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.26  E-value=0.0011  Score=62.59  Aligned_cols=27  Identities=26%  Similarity=0.505  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|.+|+|+|++||||||.+..||..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            467899999999999999999999877

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.24  E-value=0.00031  Score=61.94  Aligned_cols=29  Identities=24%  Similarity=0.269  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      .|+|.|+||+|||++|+.|++.+|.+++.
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~   51 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDRPVML   51 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence            47789999999999999999999887763

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK06620 hypothetical protein; Validated

Probab=97.24  E-value=0.0015  Score=55.89  Aligned_cols=30  Identities=13%  Similarity=0.086  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ..++|.||+|||||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            357899999999999999999888765554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.24  E-value=0.003  Score=59.35  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|.+|+|+|++||||||.+..||..+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999999876

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.23  E-value=0.00034  Score=63.61  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ...|+|+|++||||||+++.|+..+|.+++.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4589999999999999999999999988743

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR00959 ffh signal recognition particle protein

Probab=97.23  E-value=0.0022  Score=60.32  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|.+|++.|++||||||.+..||..+
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            467889999999999999999888764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.22  E-value=0.0022  Score=60.41  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh----CC--Ceeehh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL----GV--PHIATG   86 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l----g~--~~i~~d   86 (287)
                      .+|.+|+|+|++||||||.+..||..+    |.  .+++.|
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D  138 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD  138 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            457889999999999999888888755    33  356663

>CHL00176 ftsH cell division protein; Validated

Probab=97.22  E-value=0.0047  Score=61.08  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .|.-++|.||||+|||++++.||...+.+++.+
T Consensus       215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            455699999999999999999999999887765

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.19  E-value=0.00038  Score=58.68  Aligned_cols=25  Identities=32%  Similarity=0.393  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |.+|+|.||+|+||||.+..||.++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            6789999999999999999999887

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.18  E-value=0.0013  Score=61.01  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..|.+|+|.||.|+||||.+..||..+
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999876

>PHA03134 thymidine kinase; Provisional

Probab=97.18  E-value=0.025  Score=51.15  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+-++|.|.|+.|.||||.++.|++.
T Consensus        11 ~~~~rvYlDG~~GvGKTT~~~~l~~~   36 (340)
T PHA03134         11 VRIVRIYLDGAYGIGKSTTGRVMASA   36 (340)
T ss_pred             ccEEEEEEeCCCcCCHHHHHHHHHHh
Confidence            35578999999999999999999874

>PRK12377 putative replication protein; Provisional

Probab=97.15  E-value=0.0056  Score=53.52  Aligned_cols=37  Identities=30%  Similarity=0.529  Sum_probs=29.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLVRE   91 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~llr~   91 (287)
                      ..++|.|+||+|||+++..++..+   |.  .++++.+++..
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~  143 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR  143 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence            468899999999999999999887   33  45666666654

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.14  E-value=0.00044  Score=64.65  Aligned_cols=32  Identities=28%  Similarity=0.495  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +..|+|.||||||||++|+.||+.++.++..+
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            35799999999999999999999999887654

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.14  E-value=0.00055  Score=56.43  Aligned_cols=27  Identities=33%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ...++|+||+|+|||.+++.|++.+..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356889999999999999999999884

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.14  E-value=0.00052  Score=54.55  Aligned_cols=31  Identities=29%  Similarity=0.577  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      ..+..+++|+|.||+||||+...|+.+ |+..
T Consensus         6 ~nR~~~fIltGgpGaGKTtLL~aLa~~-Gfat   36 (183)
T COG3911           6 FNRHKRFILTGGPGAGKTTLLAALARA-GFAT   36 (183)
T ss_pred             cccceEEEEeCCCCCcHHHHHHHHHHc-Ccee
Confidence            346678899999999999999999886 5443

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.13  E-value=0.00055  Score=61.47  Aligned_cols=30  Identities=30%  Similarity=0.435  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      .+..++|.||||+|||++++.++..++...
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            344588999999999999999999997654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.13  E-value=0.0013  Score=56.41  Aligned_cols=58  Identities=22%  Similarity=0.207  Sum_probs=33.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh------CCCeeehhHHHHHHHHcCCchHHHHHHHHhcC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL------GVPHIATGDLVREELASSGSLSQQLSEIVNQG  110 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l------g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g  110 (287)
                      ++-.++|.|+||||||++|..++...      ++.++++++-.+..+.....++-.+.++..+|
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g   81 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSG   81 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTT
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcC
Confidence            56689999999999999998866332      34466664444333332223333444444443

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.13  E-value=0.00053  Score=64.67  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +|..++|.||||+|||++++.+|..++..++.+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V  248 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV  248 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence            556788999999999999999999998776643

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.11  E-value=0.0007  Score=52.54  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.+.+|+++.+.|++|+|||.++++||+.+
T Consensus        48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            346688999999999999999999999984

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.11  E-value=0.00043  Score=58.52  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      ++-+++|+||+||||||+.+.|-
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            55689999999999999999985

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.11  E-value=0.00062  Score=52.83  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      ...+|++.|.-||||||+++.|++.+|..
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            45689999999999999999999999864

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.11  E-value=0.003  Score=63.79  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++..|+|.|||||||||+++.|+..++..++.+
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i  243 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI  243 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence            455689999999999999999999998776644

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF05729 NACHT: NACHT domain

Probab=97.10  E-value=0.00049  Score=55.40  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++|.|++|+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            57899999999999999999887

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.10  E-value=0.00031  Score=54.70  Aligned_cols=29  Identities=38%  Similarity=0.576  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++|.|+||.||||+++.||+.+|..+..+
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~RI   30 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKRI   30 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence            78999999999999999999998876543

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.09  E-value=0.00042  Score=52.41  Aligned_cols=22  Identities=45%  Similarity=0.619  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |.|.|+||+|||++++.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999864

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK09087 hypothetical protein; Validated

Probab=97.09  E-value=0.00067  Score=58.49  Aligned_cols=37  Identities=22%  Similarity=0.142  Sum_probs=31.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE   91 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~   91 (287)
                      ..++|.|++|||||++++.+++..+..+++.+++..+
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~   81 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD   81 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence            4578999999999999999999999889888654433

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.08  E-value=0.0015  Score=56.73  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +++-.++|.|+|||||||+|..++..
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35678999999999999999877643

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.08  E-value=0.00055  Score=58.62  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=26.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      +..|..++|.|+||+||||+|+.|+.  ...+++.|.
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            34466799999999999999999963  345666644

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.07  E-value=0.00064  Score=61.88  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      .+..++|.||||+||||+++.+++.++..+.
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            3446889999999999999999999987553

>PHA02244 ATPase-like protein

Probab=97.06  E-value=0.00056  Score=62.70  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      -|+|.||+|||||++++.|+..++.+++.+..+
T Consensus       121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l  153 (383)
T PHA02244        121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI  153 (383)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence            478899999999999999999999998877544

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00094  Score=64.25  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..++|.||||+|||.+|+.+|..++.+++++
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v  307 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISV  307 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence            444799999999999999999999888887766

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.05  E-value=0.0006  Score=56.40  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=23.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh---C--CCeeehh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL---G--VPHIATG   86 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d   86 (287)
                      ++|.|+||+|||+++..++...   |  +.++++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            6899999999999999887643   3  3456653

A related protein is found in archaea.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.05  E-value=0.00069  Score=55.80  Aligned_cols=27  Identities=22%  Similarity=0.149  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++.++.|+|++||||||+.+.|...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            556889999999999999999987774

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.04  E-value=0.00076  Score=64.99  Aligned_cols=30  Identities=30%  Similarity=0.306  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      ..+++|+||+||||||..+.||+.+|+.+.
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            347889999999999999999999987655

>PRK04195 replication factor C large subunit; Provisional

Probab=97.04  E-value=0.00072  Score=64.89  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +..++|.||||+||||+++.|++.+++.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            55688999999999999999999999877654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.03  E-value=0.00041  Score=60.27  Aligned_cols=22  Identities=36%  Similarity=0.628  Sum_probs=19.3

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCC
Q 023080           59 FLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        59 i~G~pGSGKTTla~~La~~lg~   80 (287)
                      |+||+||||||+++.+.+.+..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~   22 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLES   22 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999998843

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK04328 hypothetical protein; Provisional

Probab=97.02  E-value=0.0017  Score=56.88  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-.++|.|+||||||++|..++..
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            5668899999999999999987654

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.02  E-value=0.0009  Score=59.97  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      +.+|+|+||.|||||.+|-.||++ +...||.|..
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            347999999999999999999999 5588888664

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.02  E-value=0.00077  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      +...++|.|++||||||+++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            34678999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00101 ureG urease accessory protein UreG

Probab=97.01  E-value=0.00074  Score=57.06  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |..|.|+|++||||||+.++|...+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999998875

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK08116 hypothetical protein; Validated

Probab=96.97  E-value=0.0087  Score=52.97  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=29.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVRE   91 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~   91 (287)
                      .-++|.|++|+|||.++..++..+   +  +.++++.+++..
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~  156 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR  156 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            348899999999999999999875   3  345677666654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.96  E-value=0.00068  Score=53.93  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+|+|+|+.|||||||++.|..
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            4689999999999999999965

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=96.96  E-value=0.0029  Score=54.03  Aligned_cols=29  Identities=24%  Similarity=0.253  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      ....+.+.|+||+||||++..+.+.|+..
T Consensus       118 ~~~l~glag~pGtgkst~~a~v~~aWp~~  146 (323)
T KOG2702|consen  118 NEELTGLAGRPGTGKSTRIAAVDNAWPVN  146 (323)
T ss_pred             chheeeeecCCCCcchhHHHHHHhhcchh
Confidence            44578999999999999999999987543

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.95  E-value=0.0021  Score=55.57  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=19.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.-.++|.|++||||||+|..++.
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~   46 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAY   46 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445899999999999999865544

>PHA03135 thymidine kinase; Provisional

Probab=96.95  E-value=0.04  Score=49.99  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+-++|.|.|+.|+||||+++.|++.
T Consensus         8 ~~~~rIYlDG~~GvGKTT~~~~l~~~   33 (343)
T PHA03135          8 AQLIRVYLDGPFGIGKTSMLNEMPDH   33 (343)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            35578999999999999999999985

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.94  E-value=0.001  Score=62.60  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +..++|.||||+||||+++.|++.++..++.+
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            33688899999999999999999988776654

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=96.94  E-value=0.017  Score=55.14  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=65.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ...|++|+|.|..+|||....++|.+.++-..+.+-.+                     +.+-..+.....+-......+
T Consensus       296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~---------------------~~Pt~~E~~~~~lwRf~~~lP  354 (493)
T TIGR03708       296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI---------------------AAPTDEEKAQHYLWRFWRHIP  354 (493)
T ss_pred             CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC---------------------CCcCHHHHcCcHHHHHHHhCC
Confidence            55889999999999999999999999986555544111                     111112222333333344444


Q ss_pred             cCCCccEEEe-------------CCCCCHHHH------HHHHHh----cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080          131 AGGESGFILD-------------GFPRTVKQA------EILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       131 ~~~~~g~Ild-------------g~p~~~~~~------~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                      .. +.-.|+|             |+-......      ..+++.    +..-+-|||+++.++..+|+..|.-+|
T Consensus       355 ~~-G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p  428 (493)
T TIGR03708       355 RR-GRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTP  428 (493)
T ss_pred             CC-CeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCC
Confidence            33 3445555             232222222      222221    123355899999999999999987665

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00092  Score=65.36  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..+++++++.||||.|||++++.+|+.+|-.++.+
T Consensus       347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence            44678999999999999999999999998766543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.93  E-value=0.00097  Score=60.66  Aligned_cols=28  Identities=32%  Similarity=0.546  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..++.+|.|+|+|||||||++..|...+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999987776

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0056  Score=60.02  Aligned_cols=54  Identities=19%  Similarity=0.335  Sum_probs=38.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCCchHHHHHHHHhc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSGSLSQQLSEIVNQ  109 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~~~~~~i~~~l~~  109 (287)
                      -+.-|++.||||||||-++..++...++.+|++  .+++.+.+.   ...+.+++.|.+
T Consensus       700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG---aSEq~vR~lF~r  755 (952)
T KOG0735|consen  700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG---ASEQNVRDLFER  755 (952)
T ss_pred             cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc---ccHHHHHHHHHH
Confidence            344689999999999999999999999999987  345554332   233444554443

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.91  E-value=0.0023  Score=55.26  Aligned_cols=38  Identities=21%  Similarity=0.145  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLV   89 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~ll   89 (287)
                      +++-.++|.|+|||||||++..++...   |  +.++++++-.
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~   65 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS   65 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH
Confidence            356678899999999999999996542   2  3455554333

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.90  E-value=0.0011  Score=56.64  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDL   88 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~l   88 (287)
                      .+..++|.|++||||||+++.++....     +.+++..++
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            456788999999999999999997752     345555444

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.90  E-value=0.00087  Score=57.43  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++-+++|+||+||||||+...|+-
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            566899999999999999999874

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.90  E-value=0.00074  Score=61.29  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+-+++|.||+||||||+.++||--
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4558999999999999999999843

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.89  E-value=0.00099  Score=54.67  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CC--Ceeehh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL---GV--PHIATG   86 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d   86 (287)
                      ++++.|+|||||||++..|+..+   |.  .+++.|
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            57899999999999999999876   43  345654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.87  E-value=0.001  Score=58.49  Aligned_cols=27  Identities=33%  Similarity=0.303  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++..++|.|++||||||+++.++..+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            344688999999999999999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.87  E-value=0.00095  Score=54.40  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-+|.|+||+||||||+-+.+|.-
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhc
Confidence            5568999999999999999999874

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.86  E-value=0.001  Score=56.08  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .|+|.||+||||||+.+.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            588999999999999998887764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.86  E-value=0.0011  Score=58.23  Aligned_cols=27  Identities=37%  Similarity=0.579  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      .++|.||||-||||+|..+|..+|...
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            689999999999999999999998754

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.86  E-value=0.00091  Score=64.17  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +|.-|+|.||||+|||++++.++..++..
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            45568999999999999999999998644

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.85  E-value=0.0011  Score=50.42  Aligned_cols=23  Identities=39%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +|+|+|++||||||+.+.|+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK13695 putative NTPase; Provisional

Probab=96.85  E-value=0.0011  Score=54.55  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |.|+|+|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999987765

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.84  E-value=0.0018  Score=55.65  Aligned_cols=35  Identities=11%  Similarity=0.143  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDL   88 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~l   88 (287)
                      ...++|.|++|||||++++.++...     .+.+++..+.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            3458899999999999999999876     4556666443

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.0012  Score=58.82  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      ..-.|+++||.|||||-+|+-||+.+++|+--.|.
T Consensus        96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA  130 (408)
T COG1219          96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA  130 (408)
T ss_pred             eeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence            44579999999999999999999999999865543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.84  E-value=0.0011  Score=57.66  Aligned_cols=27  Identities=33%  Similarity=0.374  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..+|.|+||||+||||+...|...|
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            366799999999999999999998877

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.83  E-value=0.0011  Score=57.29  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-++.|.||+||||||+-+.+|--
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5668999999999999999999854

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.83  E-value=0.0013  Score=59.51  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+||+||||||++..||..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357789999999999999999999877

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.82  E-value=0.0018  Score=62.14  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=51.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcc---------cHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSGSLSQQLSEIVNQGKLV---------SDEI  117 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~---------~~~~  117 (287)
                      .++-.++|.|+||+||||++..++...   |  +.+++..+-..+.......+|-.+.+++.+|...         ..+.
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~  340 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED  340 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence            356689999999999999999998754   3  4456554433333222223344455555555321         1133


Q ss_pred             HHHHHHHHHHhcccCCCccEEEeCC
Q 023080          118 IFNLLSKRLEAGQAGGESGFILDGF  142 (287)
Q Consensus       118 ~~~~l~~~l~~~~~~~~~g~Ildg~  142 (287)
                      ....+.+.+.+...   +-+|||+.
T Consensus       341 ~~~~i~~~i~~~~~---~~vvIDsi  362 (484)
T TIGR02655       341 HLQIIKSEIADFKP---ARIAIDSL  362 (484)
T ss_pred             HHHHHHHHHHHcCC---CEEEEcCH
Confidence            44444555554332   47899973

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.81  E-value=0.0013  Score=52.40  Aligned_cols=24  Identities=25%  Similarity=0.180  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++|.|+|+.+|||||+++.|...+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998876

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.81  E-value=0.001  Score=60.66  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.-++.|.||+||||||+.++||--
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999853

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=96.80  E-value=0.021  Score=46.96  Aligned_cols=113  Identities=12%  Similarity=0.174  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC---CeeehhHHHHHHHHcCCchHHHHHHHHhcCCc-----------------ccH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGV---PHIATGDLVREELASSGSLSQQLSEIVNQGKL-----------------VSD  115 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~---~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-----------------~~~  115 (287)
                      +|+|+|..+|||.|++..|.++++.   .++...+-++......  ++..+...+..+..                 ...
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~--~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp   78 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQE--HGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   78 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHH--hChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence            4789999999999999999999874   3577767776655431  22222222222111                 111


Q ss_pred             HHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhC
Q 023080          116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       116 ~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~  177 (287)
                      +.+.+.+...+   .   ...||+++.- ...+...+....+ .-+.|-+.+++++..+|.-.
T Consensus        79 ~~F~r~~~~~~---~---~~v~iIsD~R-r~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~  134 (182)
T TIGR01223        79 GFFCRKIVEGI---S---QPIWLVSDTR-RVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWV  134 (182)
T ss_pred             cHHHHHHHhcc---C---CCEEEEeCCC-cccHHHHHHHHcCCceEEEEEecCHHHHHHHHHh
Confidence            22233222211   1   2478888763 3344555555433 33568999999999988843

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=96.80  E-value=0.0062  Score=51.81  Aligned_cols=112  Identities=15%  Similarity=0.104  Sum_probs=57.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      +.|+|+|-|.|||||.|+.|.+.+.-     .++-.+|-- -.+......+..          -....+...+...+...
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s----------~~EK~lRg~L~S~v~R~   70 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDS----------QAEKALRGKLRSAVDRS   70 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCccccccc----------HHHHHHHHHHHHHHHhh
Confidence            46899999999999999999988721     222222211 001111111111          11122333444444444


Q ss_pred             ccCCCccEEEeC--CCCCHHH-HHHHHH-hcCccEEEEEecCHHHHHHHHhCC
Q 023080          130 QAGGESGFILDG--FPRTVKQ-AEILEE-VMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       130 ~~~~~~g~Ildg--~p~~~~~-~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      ..+ +.-+|+|.  |-..... ..-+.+ ...--+||+..+|.+.+++--..|
T Consensus        71 Lsk-~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~  122 (281)
T KOG3062|consen   71 LSK-GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER  122 (281)
T ss_pred             ccc-CcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC
Confidence            333 56788884  2111110 000111 112347899999999998766554

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0043  Score=58.95  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +-|.=|+++||||+|||-+|+.+|-.-|++++.+
T Consensus       335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            3555689999999999999999999999988754

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.0041  Score=55.68  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      +-.+|+|+|+.|||||-|+--||.+|+...|+.|.+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm   41 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM   41 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence            456899999999999999999999999998887554

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0044  Score=59.77  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .|-=|+++||||||||-+|+..|..-|+.+|++
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV  576 (802)
T KOG0733|consen  544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISV  576 (802)
T ss_pred             CCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence            355689999999999999999999998888877

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.79  E-value=0.0012  Score=54.26  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=18.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+..++|.|++|+||||+.+.+.+.+
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999888776

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.0015  Score=62.43  Aligned_cols=28  Identities=36%  Similarity=0.457  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .+..++|.||||+||||+|+.+++.+++
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3445889999999999999999999876

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.0012  Score=64.48  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCe--eehh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPH--IATG   86 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~--i~~d   86 (287)
                      ...++++++|.||||.|||++++.+|+.+|-.+  +|++
T Consensus       434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvG  472 (906)
T KOG2004|consen  434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVG  472 (906)
T ss_pred             ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecc
Confidence            345888999999999999999999999998655  4553

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.78  E-value=0.0036  Score=53.80  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .++-.++|.|+|||||||++..++.
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~   42 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAY   42 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHH
Confidence            3567899999999999999988764

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.00098  Score=60.43  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..++.-|.+.||||+|||-+|+.+|++-|..+|++
T Consensus       124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv  158 (386)
T KOG0737|consen  124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV  158 (386)
T ss_pred             ccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence            33667799999999999999999999998887654

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.78  E-value=0.0016  Score=70.01  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLVR   90 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~llr   90 (287)
                      .+|.-|+++||||+|||.+|+.||...+++++  +..+++.
T Consensus      1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            35556999999999999999999999998875  4455553

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0093  Score=58.96  Aligned_cols=30  Identities=20%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      =|++.||||+|||-+|+.+|..+.+.++|+
T Consensus       707 GILLYGPPGTGKTLlAKAVATEcsL~FlSV  736 (953)
T KOG0736|consen  707 GILLYGPPGTGKTLLAKAVATECSLNFLSV  736 (953)
T ss_pred             eeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence            488999999999999999999999998887

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.74  E-value=0.0024  Score=53.00  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVRE   91 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~   91 (287)
                      .+..++|.|++|+|||.+|..++.++     .+.++++.+++..
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~   89 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE   89 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence            45679999999999999999998764     3457888888776

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.73  E-value=0.0013  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +++|.|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.73  E-value=0.0017  Score=54.05  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             CCC-eEEEEEcCCCCCHHHHHHHHHHHh----CCCeeeh
Q 023080           52 DRN-VQWVFLGCPGVGKGTYASRLSKFL----GVPHIAT   85 (287)
Q Consensus        52 ~~~-~~Ivi~G~pGSGKTTla~~La~~l----g~~~i~~   85 (287)
                      .+| ..|.+.|||||||||+...+.+.+    .+.+|.-
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~   48 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG   48 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence            355 789999999999999877765554    5666655

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.73  E-value=0.0016  Score=56.39  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGD   87 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~   87 (287)
                      ..++|+||+|||||++++.++....     +.+++.++
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            3688999999999999999988754     45666654

>PRK06893 DNA replication initiation factor; Validated

Probab=96.72  E-value=0.002  Score=55.64  Aligned_cols=31  Identities=16%  Similarity=0.130  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL-----GVPHIAT   85 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~   85 (287)
                      +.++|.||||+|||++++.++..+     ++.++++
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~   75 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL   75 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence            467899999999999999999875     4556655

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.72  E-value=0.0017  Score=63.52  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+.+++||||.||||+|+.+|++-|+.++.+
T Consensus       327 KilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            4667899999999999999999999988865

>COG4240 Predicted kinase [General function prediction only]

Probab=96.72  E-value=0.002  Score=54.86  Aligned_cols=41  Identities=24%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---C---CCeeehhHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---G---VPHIATGDLVRE   91 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g---~~~i~~d~llr~   91 (287)
                      ..+|.++.|+||-||||||++..|-..+   |   ...+|.||+...
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt   93 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT   93 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence            4579999999999999999998775544   3   345788887643

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.0018  Score=61.59  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=24.1

Q ss_pred             cCCCCCCeE-EEEEcCCCCCHHHHHHHHHHHh
Q 023080           48 KAPKDRNVQ-WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        48 ~~~~~~~~~-Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .|-..+|++ +.++||||+||||+.+.|.+++
T Consensus        62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~   93 (1077)
T COG5192          62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF   93 (1077)
T ss_pred             CcccCCCCeEEEeecCCCCChhHHHHHHHHHH
Confidence            343444444 5599999999999999999887

>TIGR00763 lon ATP-dependent protease La

Probab=96.72  E-value=0.0018  Score=65.68  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++..++|.||||+||||+++.||+.++..++.+
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i  378 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF  378 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence            445789999999999999999999998776543

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd04163 Era Era subfamily

Probab=96.71  E-value=0.0015  Score=52.09  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..+|+++|++||||||+.+.|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            56799999999999999999864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK06526 transposase; Provisional

Probab=96.70  E-value=0.002  Score=56.59  Aligned_cols=39  Identities=31%  Similarity=0.347  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLVRE   91 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~llr~   91 (287)
                      .+..++|.||||+|||+++..|+...   |.  .+++..+++..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            45578999999999999999998764   33  23444444443

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.70  E-value=0.012  Score=54.01  Aligned_cols=108  Identities=19%  Similarity=0.196  Sum_probs=67.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      +...+++.|+.|||||++...|.+. +..++++-++.+..   ++.+|..-      +..-+-..+...+...+...+. 
T Consensus       140 ~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~------~~qpsQ~~Fe~~l~~~l~~~~~-  208 (345)
T PRK11784        140 QFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG------GPQPSQKDFENLLAEALLKLDP-  208 (345)
T ss_pred             cCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC------CCCcchHHHHHHHHHHHHcCCC-
Confidence            3346789999999999999999865 77899987766552   22222110      0111223345556666665443 


Q ss_pred             CCccEEEeCC---------CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          133 GESGFILDGF---------PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       133 ~~~g~Ildg~---------p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                       .+.+++++-         |....  +.+..    .-+|+|++|.+..++|+..-
T Consensus       209 -~~~i~vE~Es~~IG~~~lP~~l~--~~m~~----~~~v~i~~~~e~Rv~~l~~~  256 (345)
T PRK11784        209 -ARPIVVEDESRRIGRVHLPEALY--EAMQQ----APIVVVEAPLEERVERLLED  256 (345)
T ss_pred             -CCeEEEEeccccccCccCCHHHH--HHHhh----CCEEEEECCHHHHHHHHHHH
Confidence             256777742         22221  22222    24789999999999999864

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0019  Score=58.16  Aligned_cols=32  Identities=38%  Similarity=0.600  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      .|..|+++||.|.|||-+|++||+--|.|++.
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK   80 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK   80 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            67899999999999999999999988888774

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.68  E-value=0.017  Score=57.49  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      |.-|+|.||||+||||+++.++..++.+++.+
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i  216 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI  216 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            33489999999999999999999999887654

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.67  E-value=0.0019  Score=53.17  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=21.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      ++|+|++|||||++|..++...+.+
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~   26 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGP   26 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCC
Confidence            6889999999999999999876533

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>cd04155 Arl3 Arl3 subfamily

Probab=96.67  E-value=0.0016  Score=53.02  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|++||||||+.+.|...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcC
Confidence            34678999999999999999999753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.046  Score=47.35  Aligned_cols=110  Identities=23%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ....++|+|.|-..+||.-..+++.+.++-....+-.+                     ..+-+.+.....+...+.+.+
T Consensus        71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval---------------------~aPt~~E~~qwY~qRy~~~lP  129 (270)
T COG2326          71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL---------------------PAPTDRERGQWYFQRYVAHLP  129 (270)
T ss_pred             cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec---------------------CCCChHhhccHHHHHHHHhCC
Confidence            34778899999999999999999999986444333111                     111122222333444455555


Q ss_pred             cCCCccEEEe-------------CCCCCHHHHHHHHHhc---------Ccc-EEEEEecCHHHHHHHHhCCCccc
Q 023080          131 AGGESGFILD-------------GFPRTVKQAEILEEVM---------DID-LVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       131 ~~~~~g~Ild-------------g~p~~~~~~~~l~~~~---------~~d-~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                      +. +.-+|+|             ||-....+.+.+..+.         ++- +-+||+++.++..+|+..|.-+|
T Consensus       130 a~-GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP  203 (270)
T COG2326         130 AA-GEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDP  203 (270)
T ss_pred             CC-CeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCH
Confidence            55 5566776             3422222223333221         122 44899999999999999998666

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.66  E-value=0.0023  Score=57.03  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+||+|+||||++..|+..+
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998765

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.66  E-value=0.0016  Score=62.96  Aligned_cols=28  Identities=29%  Similarity=0.491  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+..+++|.||||+||||+++.|++.+
T Consensus       100 ~~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        100 EEKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            3456789999999999999999999876

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.64  E-value=0.0046  Score=59.40  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +++-.++|.|+|||||||+|..++-
T Consensus        19 p~g~~~Li~G~pGsGKT~la~qfl~   43 (484)
T TIGR02655        19 PIGRSTLVSGTSGTGKTLFSIQFLY   43 (484)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3667899999999999999999843

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.63  E-value=0.02  Score=56.12  Aligned_cols=37  Identities=16%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh-------CCCeeehhHHHHHHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL-------GVPHIATGDLVREEL   93 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l-------g~~~i~~d~llr~~~   93 (287)
                      ++|.|++|+|||.|++.++..+       .+.+++..+++....
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~  360 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI  360 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence            7899999999999999998865       235778777765543

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.63  E-value=0.0023  Score=52.11  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..|.|+|++||||||++..|...+
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999887

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PHA03138 thymidine kinase; Provisional

Probab=96.63  E-value=0.12  Score=46.93  Aligned_cols=28  Identities=25%  Similarity=0.179  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.+-.+|.|.|+.|+||||.++.+.+.+
T Consensus         9 ~~~~~riYleG~~GvGKTT~~~~~l~~~   36 (340)
T PHA03138          9 KMCILRIYLDGAFGIGKTTAAEAFLHGF   36 (340)
T ss_pred             CccEEEEEEECCCCcCHHhHHHHHHHhh
Confidence            4466789999999999999998776654

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.61  E-value=0.0016  Score=51.02  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            45578999999999999999998654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK09183 transposase/IS protein; Provisional

Probab=96.61  E-value=0.0029  Score=55.70  Aligned_cols=37  Identities=38%  Similarity=0.494  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLV   89 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~ll   89 (287)
                      +...++|+||+|+|||+++..|+...   |.  .+++..+++
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            45578899999999999999997553   33  345554554

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.61  E-value=0.0022  Score=51.42  Aligned_cols=32  Identities=28%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      ..-++|+|++|+||||++..|.++ |..+++-|
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            456899999999999999988875 66666543

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.61  E-value=0.002  Score=53.71  Aligned_cols=26  Identities=27%  Similarity=0.379  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ....++|.|++||||||+.+.|...+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45679999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PLN03025 replication factor C subunit; Provisional

Probab=96.61  E-value=0.0021  Score=58.32  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .++|.||||+||||++..+++.+.
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999873

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.61  E-value=0.0019  Score=49.16  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .|+|+|++|+||||+.+.|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.61  E-value=0.002  Score=57.01  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=26.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +...++.+|.|+|+||+||||+...|..+|
T Consensus        46 p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          46 PRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             hcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            444578899999999999999999999887

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.61  E-value=0.0019  Score=55.52  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-.+.|.|++||||||+++.|+-.
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAGL   56 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence            5567899999999999999999853

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.005  Score=54.86  Aligned_cols=38  Identities=26%  Similarity=0.438  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLV   89 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~ll   89 (287)
                      .+|..+.|.||||.|||-+|+.++...|+.++  +.+.+.
T Consensus       164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv  203 (388)
T KOG0651|consen  164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV  203 (388)
T ss_pred             CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence            36778889999999999999999999987654  344443

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.61  E-value=0.0024  Score=59.01  Aligned_cols=29  Identities=38%  Similarity=0.551  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .+-.++|.||+|+||||+++.+++.+++.
T Consensus        37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~   65 (363)
T PRK14961         37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQ   65 (363)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence            34457899999999999999999998753

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.60  E-value=0.0021  Score=61.06  Aligned_cols=32  Identities=34%  Similarity=0.316  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      .+..+.+|+||+||||||..+.|++.+|+.++
T Consensus       108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            35567789999999999999999999998765

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0053  Score=53.64  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+|.-|++.||||+|||-+|+..|.+.+..+|.+
T Consensus       209 dppkgvllygppgtgktl~aravanrtdacfirv  242 (435)
T KOG0729|consen  209 DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRV  242 (435)
T ss_pred             CCCCceEEeCCCCCchhHHHHHHhcccCceEEee
Confidence            3556688999999999999999999999988865

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.59  E-value=0.0018  Score=61.54  Aligned_cols=28  Identities=39%  Similarity=0.552  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +-.++|.||+|+||||+|+.||+.+++.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4458999999999999999999999874

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.59  E-value=0.0023  Score=54.26  Aligned_cols=28  Identities=32%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ..++.|+|+|++||||||+.+.+...++
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3577899999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.58  E-value=0.002  Score=52.18  Aligned_cols=23  Identities=35%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +|.|+|++||||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK10646 ADP-binding protein; Provisional

Probab=96.58  E-value=0.003  Score=50.87  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .+.+|++.|.-|+||||+++.|++.+|.
T Consensus        27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         27 GATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3457899999999999999999999986

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.57  E-value=0.002  Score=55.79  Aligned_cols=29  Identities=28%  Similarity=0.366  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .-..|.+++|+|++||||||+...|-..+
T Consensus         9 l~~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen    9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             hcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            34577799999999999999988887655

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.57  E-value=0.0022  Score=53.52  Aligned_cols=26  Identities=35%  Similarity=0.511  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999998543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0035  Score=54.35  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREE   92 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~   92 (287)
                      .+|.-+++.||||+|||.+++..|.+....+|.+  ++++++.
T Consensus       187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky  229 (408)
T KOG0727|consen  187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY  229 (408)
T ss_pred             CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence            3555688999999999999999999876666543  3444443

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.56  E-value=0.0019  Score=60.13  Aligned_cols=24  Identities=38%  Similarity=0.714  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      -=|+|.|+||+||||+|+.||+.|
T Consensus       264 eGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         264 EGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             cceEEecCCCCChhHHHHHHHHHH
Confidence            348899999999999999999988

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.55  E-value=0.0029  Score=63.74  Aligned_cols=29  Identities=38%  Similarity=0.623  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      .++|+||||+|||++|+.||+.++.+++.
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~  518 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLR  518 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence            68899999999999999999999876653

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.55  E-value=0.0024  Score=59.16  Aligned_cols=28  Identities=29%  Similarity=0.371  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .+|..|.|+|++||||||++..|.+++.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3788999999999999999999998875

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.55  E-value=0.0028  Score=56.99  Aligned_cols=28  Identities=29%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..++.+|.|+|++||||||++..|+..+
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999998865

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.54  E-value=0.0025  Score=57.88  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .++|.||||+||||+++.+++.+.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999999873

>PRK13768 GTPase; Provisional

Probab=96.54  E-value=0.0025  Score=55.95  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+++.|++||||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            4678999999999999999998776

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.53  E-value=0.0013  Score=56.24  Aligned_cols=22  Identities=50%  Similarity=0.889  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      -+++|||||||||.|.-..+-+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fl   26 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFL   26 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHH
Confidence            5789999999999998776654

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.52  E-value=0.0031  Score=45.59  Aligned_cols=30  Identities=37%  Similarity=0.413  Sum_probs=25.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh---CCCeeehh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL---GVPHIATG   86 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d   86 (287)
                      +++.|..|+||||++..|+..+   |..++-+|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            6789999999999999999987   66666554

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.52  E-value=0.0019  Score=54.56  Aligned_cols=24  Identities=38%  Similarity=0.671  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      -.++|.|+||||||+++++|..-+
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhC
Confidence            368999999999999999999876

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK04296 thymidine kinase; Provisional

Probab=96.51  E-value=0.0026  Score=53.31  Aligned_cols=25  Identities=16%  Similarity=-0.008  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+++++|+||+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            3578899999999999999998876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.51  E-value=0.0024  Score=54.38  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.51  E-value=0.0025  Score=61.32  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      .+..++|+||+|+||||+|+.||+.+++..
T Consensus        42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            455689999999999999999999998754

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.51  E-value=0.0026  Score=57.90  Aligned_cols=29  Identities=38%  Similarity=0.662  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      .++|.|+||+|||++++.+|+.++.+++.
T Consensus        45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~   73 (329)
T COG0714          45 HVLLEGPPGVGKTLLARALARALGLPFVR   73 (329)
T ss_pred             CEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence            48899999999999999999999876553

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.50  E-value=0.018  Score=51.85  Aligned_cols=87  Identities=22%  Similarity=0.400  Sum_probs=53.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC-CeeehhHHHHHHHHcC-CchHHHHH-HHHh-cCCcccHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GV-PHIATGDLVREELASS-GSLSQQLS-EIVN-QGKLVSDEIIFNLLS  123 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~-~~i~~d~llr~~~~~~-~~~~~~i~-~~l~-~g~~~~~~~~~~~l~  123 (287)
                      ..+|.+|+|.|..|+||||-...||.+|   |. +++...|.+|.....+ ..+++... .++. ....-|-.+..+.+.
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            4579999999999999999999999988   44 4577788888743211 11222211 1111 112334455666666


Q ss_pred             HHHHhcccCCCccEEEeC
Q 023080          124 KRLEAGQAGGESGFILDG  141 (287)
Q Consensus       124 ~~l~~~~~~~~~g~Ildg  141 (287)
                      .+..+.    ..-+++|-
T Consensus       216 ~Akar~----~DvvliDT  229 (340)
T COG0552         216 AAKARG----IDVVLIDT  229 (340)
T ss_pred             HHHHcC----CCEEEEeC
Confidence            655554    34577774

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.49  E-value=0.0025  Score=54.08  Aligned_cols=26  Identities=23%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.49  E-value=0.0025  Score=54.27  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            55689999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.49  E-value=0.0023  Score=54.23  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      . +++|+|++||||||+.+.|+-.+
T Consensus        26 g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          26 G-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             C-cEEEECCCCCCHHHHHHHHhCCC
Confidence            5 89999999999999999998543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08181 transposase; Validated

Probab=96.48  E-value=0.0044  Score=54.82  Aligned_cols=40  Identities=33%  Similarity=0.491  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREE   92 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~   92 (287)
                      +...++|+||+|+|||.++..++...   |  +.++++.+++...
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            44569999999999999999998653   4  5567777777653

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.48  E-value=0.0034  Score=56.64  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      .|..+++.|+||+||||+++.+++.++..++
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~   72 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL   72 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence            3456667999999999999999998865443

>PHA02624 large T antigen; Provisional

Probab=96.47  E-value=0.0035  Score=60.82  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ....|+|.|||||||||++..|.+.+|...+++
T Consensus       430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            445899999999999999999999997667765

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.46  E-value=0.0029  Score=58.41  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++-+++|+||+|+||||++..|+..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356688999999999999999999764

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.46  E-value=0.012  Score=59.94  Aligned_cols=28  Identities=32%  Similarity=0.445  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +--++|.|++|+||||+++.|++.+++.
T Consensus        37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         37 NHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            3457899999999999999999999864

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.46  E-value=0.0028  Score=53.67  Aligned_cols=26  Identities=27%  Similarity=0.356  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF13479 AAA_24: AAA domain

Probab=96.45  E-value=0.0023  Score=54.56  Aligned_cols=30  Identities=33%  Similarity=0.459  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++..++|.|+||+||||++..+   =+..+|++
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~   31 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDT   31 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence            5778999999999999999988   23446666

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.44  E-value=0.012  Score=54.77  Aligned_cols=111  Identities=27%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHHHHHcC-CchHHHHH-HHHhcC-CcccHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVREELASS-GSLSQQLS-EIVNQG-KLVSDEIIFNLL  122 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~~~~~~-~~~~~~i~-~~l~~g-~~~~~~~~~~~l  122 (287)
                      +.+|.+|.+.|.-||||||.|..||.+|   |..  .++. |+.|...-.. ..++..+. .++..+ ..-|-++..+.+
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al  175 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL  175 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence            4578899999999999999999999887   332  3444 5555422110 00111110 112222 223445555555


Q ss_pred             HHHHHhcccCCCccEEEeCCCCCHHHHHHH------HHhcCccEE-EEEec
Q 023080          123 SKRLEAGQAGGESGFILDGFPRTVKQAEIL------EEVMDIDLV-VNLKL  166 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l------~~~~~~d~v-i~L~~  166 (287)
                      ..+-...    ..-+|+|-..+.....+.+      .....|+-+ +.+|+
T Consensus       176 ~~ak~~~----~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa  222 (451)
T COG0541         176 EKAKEEG----YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA  222 (451)
T ss_pred             HHHHHcC----CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence            5544433    3568888654443333333      333457744 45555

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.44  E-value=0.0027  Score=53.69  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +..+-.|+||+||||||+.+.|-.-.
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhc
Confidence            44567899999999999999886543

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.43  E-value=0.0034  Score=42.53  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+|+|+.||||||+...+.--
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999877543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.43  E-value=0.0029  Score=55.36  Aligned_cols=26  Identities=31%  Similarity=0.323  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+-+++|+||.||||||+.+.|+.-+
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            56789999999999999999999865

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=96.43  E-value=0.04  Score=44.44  Aligned_cols=128  Identities=14%  Similarity=0.077  Sum_probs=68.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHcCCchHHH--HHH-HHhcCCc-c---cHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELASSGSLSQQ--LSE-IVNQGKL-V---SDEIIFNL  121 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~~~~~~~~--i~~-~l~~g~~-~---~~~~~~~~  121 (287)
                      +.+..+|++-|.+-+|||++|..|-+...  +-|+-+|-++.......-..+.-  ... ....|+. +   +-.+....
T Consensus        20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~   99 (205)
T COG3896          20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA   99 (205)
T ss_pred             CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence            44667888999999999999999988774  44666644443322211111100  000 0011110 0   01111111


Q ss_pred             H---HHHHHhcccCCCccEEEeCCCCCHHHHHH-HHHhcCcc-EEEEEecCHHHHHHHHhCCC
Q 023080          122 L---SKRLEAGQAGGESGFILDGFPRTVKQAEI-LEEVMDID-LVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       122 l---~~~l~~~~~~~~~g~Ildg~p~~~~~~~~-l~~~~~~d-~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      +   ...+..-... +..+|.|.+-.+..+.-. +..+..++ +.|=+.+|.|++.+|-..|.
T Consensus       100 ~~~~r~ai~a~ad~-G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~  161 (205)
T COG3896         100 MHSRRRAIRAYADN-GMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG  161 (205)
T ss_pred             HHHHHHHHHHHhcc-CcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC
Confidence            1   1122211111 456899988777655533 33333444 57788999999999987753

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.43  E-value=0.0029  Score=53.99  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            56689999999999999999998654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.43  E-value=0.0037  Score=62.68  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      ...++|.||||+||||+++.+++.++..++.++.
T Consensus        52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna   85 (725)
T PRK13341         52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA   85 (725)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence            3457899999999999999999988876665533

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.43  E-value=0.0028  Score=52.48  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-+++|+|+.||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            55689999999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.42  E-value=0.003  Score=53.47  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55678999999999999999998643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06921 hypothetical protein; Provisional

Probab=96.41  E-value=0.011  Score=52.25  Aligned_cols=39  Identities=26%  Similarity=0.305  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh----CC--CeeehhHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL----GV--PHIATGDLVRE   91 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l----g~--~~i~~d~llr~   91 (287)
                      ....++|.|++|+|||+++..++..+    |.  .+++..+++..
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~  160 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD  160 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence            34568999999999999999998865    33  34555454443

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.41  E-value=0.0028  Score=54.69  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            55689999999999999999998644

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.41  E-value=0.003  Score=54.85  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..-+++|+||+||||||..+++-.-.
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrLi   51 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRLI   51 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhccc
Confidence            56689999999999999999986543

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.41  E-value=0.0031  Score=53.48  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55679999999999999999998654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.41  E-value=0.003  Score=53.61  Aligned_cols=26  Identities=27%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.40  E-value=0.003  Score=54.49  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.40  E-value=0.0039  Score=63.17  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ++..++|.||||+||||+++.+++.++..++.
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~  379 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            45679999999999999999999999877653

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.40  E-value=0.021  Score=56.14  Aligned_cols=28  Identities=36%  Similarity=0.515  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .+-.++|+|++|+||||+++.|++.+++
T Consensus        37 LpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         37 LHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3456789999999999999999999987

>PRK08727 hypothetical protein; Validated

Probab=96.40  E-value=0.026  Score=48.79  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLV   89 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~ll   89 (287)
                      .++|.|++|||||+++..++...   |.  .++++.++.
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~   81 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA   81 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence            48999999999999999986654   33  456665544

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.40  E-value=0.055  Score=46.33  Aligned_cols=36  Identities=22%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh-----C--CCeeehhHHHHHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL-----G--VPHIATGDLVREE   92 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l-----g--~~~i~~d~llr~~   92 (287)
                      ++|.|++|+|||.+.+.++..+     +  +.+++..++.+..
T Consensus        37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~   79 (219)
T PF00308_consen   37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREF   79 (219)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHH
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHH
Confidence            6889999999999999998764     2  3467776766553

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.40  E-value=0.0031  Score=54.58  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            55689999999999999999998644

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA03133 thymidine kinase; Provisional

Probab=96.40  E-value=0.26  Score=45.06  Aligned_cols=27  Identities=33%  Similarity=0.358  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +-.+|.|.|+.|.||||.++.+....+
T Consensus        39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~   65 (368)
T PHA03133         39 ALLRIYVDGPHGLGKTTTAAALAAALG   65 (368)
T ss_pred             eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence            557899999999999999988888775

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.40  E-value=0.0031  Score=53.79  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.39  E-value=0.0086  Score=54.22  Aligned_cols=39  Identities=21%  Similarity=0.114  Sum_probs=28.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLV   89 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~ll   89 (287)
                      -++...+.|.|+|||||||+|-.++...   |  +.+|++...+
T Consensus        52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~   95 (321)
T TIGR02012        52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL   95 (321)
T ss_pred             CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence            3466788899999999999998877654   2  3466664433

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.39  E-value=0.0031  Score=53.27  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.0027  Score=59.13  Aligned_cols=29  Identities=21%  Similarity=0.575  Sum_probs=26.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .++.||||+||||+...+|..+++-++++
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            68999999999999999999999877654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.39  E-value=0.0032  Score=53.38  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.39  E-value=0.0033  Score=52.72  Aligned_cols=26  Identities=15%  Similarity=0.265  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999998754

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.38  E-value=0.0034  Score=51.84  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.37  E-value=0.0033  Score=53.62  Aligned_cols=26  Identities=31%  Similarity=0.357  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45579999999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.37  E-value=0.0034  Score=53.32  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45679999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.37  E-value=0.003  Score=53.64  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            55679999999999999999998654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.36  E-value=0.0033  Score=60.54  Aligned_cols=28  Identities=29%  Similarity=0.371  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      -+-.++|+||||+||||+++.|++.+.+
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3445799999999999999999999865

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.36  E-value=0.0034  Score=53.60  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.36  E-value=0.0034  Score=54.09  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.36  E-value=0.0034  Score=53.81  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            55689999999999999999999765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.35  E-value=0.0033  Score=53.37  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+|.||||+||||+...+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            57889999999997666665554

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.35  E-value=0.0034  Score=54.13  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999998654

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.35  E-value=0.0034  Score=54.35  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.35  E-value=0.0036  Score=51.65  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            45578999999999999999998654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.34  E-value=0.0037  Score=60.58  Aligned_cols=27  Identities=37%  Similarity=0.581  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      +..++|.||+|+||||+|+.|++.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            445789999999999999999999875

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.34  E-value=0.0034  Score=52.89  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+|++||||||+.+.|+-.+
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45679999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.34  E-value=0.0049  Score=53.72  Aligned_cols=36  Identities=33%  Similarity=0.611  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVRE   91 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~   91 (287)
                      .++|.|++|+|||+++..++..+   |  +.++++.+++..
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~  141 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA  141 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence            58899999999999999999887   3  335566666544

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.34  E-value=0.0033  Score=53.68  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45679999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.34  E-value=0.0048  Score=49.21  Aligned_cols=29  Identities=31%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ..+-+|++.|.-||||||+++-|++.+|.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            36678999999999999999999999985

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.34  E-value=0.0031  Score=59.36  Aligned_cols=26  Identities=38%  Similarity=0.549  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ...|+|.|+||+||||+|+.|+..++
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            44688999999999999999999874

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.34  E-value=0.0036  Score=51.82  Aligned_cols=23  Identities=35%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      ++-+++|.||.||||||+.+.+.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            55689999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.34  E-value=0.0035  Score=54.34  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999998654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=96.33  E-value=0.052  Score=50.74  Aligned_cols=29  Identities=28%  Similarity=0.548  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .+.-++|.||+|+||||+|..||+.+.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            45568899999999999999999988664

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.32  E-value=0.0038  Score=51.30  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45579999999999999999998654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.32  E-value=0.0039  Score=50.97  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|+.||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45579999999999999999998654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.32  E-value=0.0039  Score=51.21  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            45589999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.32  E-value=0.033  Score=53.04  Aligned_cols=36  Identities=14%  Similarity=0.366  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----C--CCeeehhHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL-----G--VPHIATGDLVRE   91 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l-----g--~~~i~~d~llr~   91 (287)
                      -++|.|++|+|||++++.++..+     +  +.+++..++..+
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~  192 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND  192 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            47889999999999999999876     2  346677666544

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.31  E-value=0.0035  Score=53.67  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.31  E-value=0.0043  Score=56.74  Aligned_cols=32  Identities=34%  Similarity=0.560  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIA   84 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~   84 (287)
                      -+..|+|.||||||||.+|-.+|+.+|  +|+..
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~   82 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS   82 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence            345789999999999999999999996  55543

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.31  E-value=0.012  Score=53.31  Aligned_cols=36  Identities=22%  Similarity=0.149  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGD   87 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~   87 (287)
                      ++..++.|.|||||||||+|-.++...   |  +.+|++..
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~   93 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH   93 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence            366678899999999999999988554   3  44566533

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.31  E-value=0.0037  Score=53.27  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+..+
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45678999999999999999998643

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.30  E-value=0.0038  Score=53.97  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            55689999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.30  E-value=0.0038  Score=53.58  Aligned_cols=26  Identities=19%  Similarity=0.268  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            55689999999999999999998643

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.30  E-value=0.0051  Score=62.10  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=28.5

Q ss_pred             CCe-EEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHH
Q 023080           53 RNV-QWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDL   88 (287)
Q Consensus        53 ~~~-~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~l   88 (287)
                      +|. .++|.||+|+|||++|+.||+.++..++  +++++
T Consensus       482 ~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~  520 (731)
T TIGR02639       482 KPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY  520 (731)
T ss_pred             CCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence            443 5789999999999999999999976544  44443

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.30  E-value=0.031  Score=55.93  Aligned_cols=28  Identities=32%  Similarity=0.517  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +-.++|+|++|+||||+++.|++.+++.
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4457899999999999999999999874

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=96.30  E-value=0.0031  Score=54.00  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+.++|.||||+||||-...||..+
T Consensus        47 nmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   47 NMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCceEeeCCCCCchhhHHHHHHHHH
Confidence            44578999999999999999999875

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.29  E-value=0.0038  Score=63.25  Aligned_cols=29  Identities=31%  Similarity=0.447  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      -+-.++|+||+|+||||+|+.|++.+++.
T Consensus        37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            34457899999999999999999999874

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.29  E-value=0.0038  Score=52.26  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++-+++|+|++||||||+.+.|+-
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            556899999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01394 radB RadB

Probab=96.29  E-value=0.0049  Score=52.53  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATG   86 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d   86 (287)
                      .++..+.|.|+|||||||+|..++...     .+.+++++
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            356788899999999999999998765     23456553

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.29  E-value=0.023  Score=52.59  Aligned_cols=114  Identities=18%  Similarity=0.169  Sum_probs=59.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      .|+|+||+||||||+.+.|.+.++     ...+.+.|-+.-.+..........+..+  |.-.  ..+...+...+... 
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~ev--g~~~--~~~~~~l~~aLR~~-  225 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQI--GRDV--DSFANGIRLALRRA-  225 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccccc--CCCc--cCHHHHHHHhhccC-
Confidence            578999999999999999988763     3345554444332211110000000001  1101  12445555556553 


Q ss_pred             cCCCccEEEeCCCCCHHHHHH-HHHhc-CccEEEEEec-CHHHHHHHHhCC
Q 023080          131 AGGESGFILDGFPRTVKQAEI-LEEVM-DIDLVVNLKL-CEDVLLEKCLGR  178 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~-l~~~~-~~d~vi~L~~-~~e~l~~Rl~~R  178 (287)
                          -.+|+-|--++.+.+.. +.... +-.++--+++ +....+.|+..-
T Consensus       226 ----PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~Rl~~~  272 (372)
T TIGR02525       226 ----PKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQM  272 (372)
T ss_pred             ----CCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHHHh
Confidence                45777777777766554 33221 1112334444 556788888653

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.29  E-value=0.0039  Score=53.62  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.28  E-value=0.0038  Score=54.07  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-+++|+|+.||||||+.+.|+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5568999999999999999999865

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.28  E-value=0.0037  Score=58.52  Aligned_cols=28  Identities=32%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +--++|.||+|+||||+|..||+.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3458899999999999999999999774

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.28  E-value=0.004  Score=52.63  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            55689999999999999999998643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.28  E-value=0.0045  Score=57.43  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .|.+|+|+||.||||||++..||..+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999776

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.28  E-value=0.0039  Score=54.11  Aligned_cols=26  Identities=19%  Similarity=0.464  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45679999999999999999998654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.28  E-value=0.0041  Score=50.65  Aligned_cols=26  Identities=35%  Similarity=0.427  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|.|+.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.28  E-value=0.0037  Score=52.81  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      -+++|+||.||||||+.+.++-
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            5788999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.27  E-value=0.0038  Score=50.14  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |.++|++||||||++..|+..+
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~   23 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITAL   23 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7889999999999999999876

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.27  E-value=0.004  Score=51.61  Aligned_cols=26  Identities=19%  Similarity=0.084  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-.++|+|++||||||+.+.|+-.+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45579999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.27  E-value=0.005  Score=52.04  Aligned_cols=35  Identities=31%  Similarity=0.328  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATG   86 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d   86 (287)
                      ++...+.|.|+||||||++|..++...   |  +.++++.
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            456789999999999999999988654   3  4566664

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.27  E-value=0.0044  Score=54.24  Aligned_cols=43  Identities=30%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC---C--CeeehhHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLG---V--PHIATGDLVRE   91 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~--~~i~~d~llr~   91 (287)
                      ....+|..|++.|..||||||++++|-.++.   .  -+|++|-.++.
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~   61 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN   61 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence            4456888999999999999999999988772   2  25666666554

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.26  E-value=0.0035  Score=55.08  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~   85 (287)
                      ++.-.++|.|+||||||+++..++...   |  +.++++
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~   59 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST   59 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            356678999999999999999887654   3  345555

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.26  E-value=0.004  Score=54.25  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            55689999999999999999998754

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.26  E-value=0.0041  Score=49.97  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .|+|+|++||||||+.++|..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.26  E-value=0.004  Score=53.52  Aligned_cols=26  Identities=35%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.26  E-value=0.0041  Score=53.92  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55679999999999999999998654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.26  E-value=0.004  Score=53.63  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45679999999999999999998654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.26  E-value=0.005  Score=54.85  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .....|.|+|+|||||||+...|...+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356788999999999999999888775

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.26  E-value=0.0043  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.25  E-value=0.0041  Score=54.14  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55679999999999999999998654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.24  E-value=0.004  Score=54.37  Aligned_cols=26  Identities=27%  Similarity=0.245  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+.+.|+-.+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.24  E-value=0.0039  Score=52.65  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccC
Confidence            55689999999999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.24  E-value=0.0042  Score=54.48  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.24  E-value=0.0046  Score=50.70  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+.+.|+-.+
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45689999999999999999998764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=96.23  E-value=0.0047  Score=49.44  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=18.3

Q ss_pred             ccEEEEEecCHHHHHHHHhCCC
Q 023080          158 IDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       158 ~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ||++|||++|++++++|+.+|+
T Consensus        68 pdl~IYL~~~~e~~~~RI~kRg   89 (146)
T PF01712_consen   68 PDLIIYLDASPETCLERIKKRG   89 (146)
T ss_dssp             -SEEEEEE--HHHHHHHHHHCT
T ss_pred             CCeEEEEeCCHHHHHHHHHHhC
Confidence            8999999999999999999995

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.23  E-value=0.0045  Score=49.30  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+.++|..
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999975

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.23  E-value=0.0053  Score=60.37  Aligned_cols=28  Identities=39%  Similarity=0.566  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +-.++|.||+|+||||+|+.||+.+++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4567899999999999999999999874

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.22  E-value=0.0047  Score=51.08  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+.+.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.22  E-value=0.0042  Score=49.74  Aligned_cols=21  Identities=33%  Similarity=0.680  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +|+++|++||||||+.++|..
T Consensus         2 kv~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999864

Rab GTPases are implicated in vesicle trafficking.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.22  E-value=0.0046  Score=53.06  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++-+++|+|++||||||+.+.|+-.+.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            556899999999999999999986543

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.22  E-value=0.0043  Score=54.19  Aligned_cols=25  Identities=28%  Similarity=0.502  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-+++|+|+.||||||+.+.|+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            5568999999999999999999864

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.21  E-value=0.0045  Score=53.10  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            55689999999999999999998654

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.21  E-value=0.0082  Score=60.61  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +..++|.||||+|||++++.|++++
T Consensus       203 ~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       203 KNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4468899999999999999999987

>PRK10908 cell division protein FtsE; Provisional

Probab=96.21  E-value=0.0046  Score=52.87  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.20  E-value=0.0044  Score=54.43  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            55689999999999999999998654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.20  E-value=0.0045  Score=54.29  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45679999999999999999999654

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.20  E-value=0.0047  Score=52.08  Aligned_cols=26  Identities=27%  Similarity=0.261  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            56689999999999999999998654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=96.20  E-value=0.0034  Score=53.85  Aligned_cols=22  Identities=41%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |+|.|+|||||||..+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999874

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.19  E-value=0.0046  Score=53.25  Aligned_cols=26  Identities=23%  Similarity=0.425  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            55689999999999999999998664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.19  E-value=0.0047  Score=49.24  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            45678999999999999999998654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.19  E-value=0.0046  Score=53.51  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.19  E-value=0.0047  Score=53.25  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999998654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.18  E-value=0.0046  Score=53.27  Aligned_cols=26  Identities=35%  Similarity=0.537  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56689999999999999999998654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.18  E-value=0.0052  Score=50.64  Aligned_cols=29  Identities=28%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .++.+...|+|+|.+|+||||+...|...
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34457788999999999999999998753

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=96.18  E-value=0.0052  Score=54.49  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..|.|+|++||||||++..|...|
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L   25 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRL   25 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999887

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.18  E-value=0.0049  Score=50.76  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|++||||||+.+.|..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~   36 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN   36 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh
Confidence            5778899999999999999999964

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.18  E-value=0.0048  Score=51.07  Aligned_cols=22  Identities=32%  Similarity=0.362  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++++|.|..||||||+.+.|.+
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~   22 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK   22 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999999985

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.18  E-value=0.0055  Score=58.63  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .+--++|.||+|+||||+|+.||+.+++.
T Consensus        34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         34 IPQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            34468999999999999999999988764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.17  E-value=0.0049  Score=52.24  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+..+
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.17  E-value=0.0048  Score=52.94  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+|++||||||+.+.|+-.+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            45578999999999999999998654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=96.17  E-value=0.0051  Score=48.18  Aligned_cols=23  Identities=39%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+|+|+|.+||||||+...|...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999988754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.17  E-value=0.0047  Score=53.90  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.0049  Score=53.41  Aligned_cols=26  Identities=23%  Similarity=0.152  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999998754

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.17  E-value=0.0044  Score=52.70  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      -+++|+|+.||||||+.+.|+-.+
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCC
Confidence            688999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-29
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-29
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		3e-29
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-29
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-29
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		3e-29
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-29
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		9e-29
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		1e-28
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		4e-28
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		5e-28
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		1e-27
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		7e-26
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		2e-25
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		1e-24
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		2e-24
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		2e-24
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		3e-24
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		6e-24
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		6e-24
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		6e-24
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		8e-24
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		2e-23
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		3e-23
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		3e-23
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		2e-22
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		4e-22
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		9e-22
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		1e-21
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		6e-21
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		1e-19
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		1e-17
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		4e-17
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		2e-14
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		2e-14
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		5e-13
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		2e-12
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		3e-12
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		2e-11
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		3e-11
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		4e-11
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		8e-08

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
           EE V +RL V  +++QP+ +FY  +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 24/209 (11%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLL 255
           EE V +RL V  +++QP+ +FY  +G L+
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYLV 193

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
           EE V +RL V  +++QP+ +FY  +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
           EE V +RL V  +++QP+ +FY  +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
           EE V +RL V  +++QP+ +FY  +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT A ++    G+PHI+TGD+ R                +++G LV 
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
           DE+   ++ +RL       ++GF+LDGFPRTV QAE LE ++      +D V+++ + +D
Sbjct: 61  DEVTIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA--HCMSKLITRADDTE 227
           VL+E+  GRR+C  CG  +++             I   P  P     C  +L  RADD E
Sbjct: 119 VLMERLTGRRICRNCGATYHL-------------IFHPPAKPGVCDKCGGELYQRADDNE 165
Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKL 254
             V  RL V  ++ +P+ +FY  +G L
Sbjct: 166 ATVANRLEVNMKQMKPLVDFYEQKGYL 192

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
           EE V +RL V  +++QP+ +FY  +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score =  123 bits (309), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 24/208 (11%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
           EE V +RL V  ++ QP+ +FY  +G L
Sbjct: 165 EETVSKRLEVNMKQIQPLLDFYSEKGYL 192

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 24/224 (10%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           +  V +G PG GKGT   R+ +  G+PHI+TGD+ R                +++G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
           DE+   ++ +RL  G+   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +D
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
           VL+E+  GRR+CS CG  +++                 P   P  C     +L  RADD 
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270
           EE V +RL V  +++ P+ +FY  +G L+  +    I + +  L
Sbjct: 165 EETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADL 208

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 114/205 (55%), Gaps = 18/205 (8%)
Query: 53  RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
           + ++ V LG PG GKGT A RL++   V H+ATGD++R                ++ GKL
Sbjct: 15  KGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLC 167
           VSDE++  L+ K LE      ++GF+LDGFPRTV+QAE+L+++M+     +D V+   + 
Sbjct: 75  VSDEMVVELIEKNLETPLC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 132
Query: 168 EDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTE 227
           + +L+ +  GR +  + G +++    N         I+  P          LI R+DD E
Sbjct: 133 DSLLIRRITGRLIHPKSGRSYH-EEFNPPKEPMKDDITGEP----------LIRRSDDNE 181
Query: 228 EVVKERLRVYNEKSQPVEEFYRNRG 252
           + +K RL+ Y+ ++ P+ E+YR RG
Sbjct: 182 KALKIRLQAYHTQTTPLIEYYRKRG 206

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 18/205 (8%)
Query: 53  RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
           + V+ V LG PG GKGT A +L+K   V H+ATGD++R                ++ GKL
Sbjct: 15  KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLC 167
           VSDE++  L+ K LE      ++GF+LDGFPRTV+QAE+L+++M+     +D V+   + 
Sbjct: 75  VSDEMVLELIEKNLETPPC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 132
Query: 168 EDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTE 227
           + +L+ +  GR +  Q G +++    N         I+  P          LI R+DD +
Sbjct: 133 DSLLIRRITGRLIHPQSGRSYH-EEFNPPKEPMKDDITGEP----------LIRRSDDNK 181
Query: 228 EVVKERLRVYNEKSQPVEEFYRNRG 252
           + +K RL  Y+ ++ P+ E+Y  RG
Sbjct: 182 KALKIRLEAYHTQTTPLVEYYSKRG 206

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 28/223 (12%)
Query: 57  WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDE 116
            VFLG PG GKGT A RL+K  G  HI+TGD++R                + +G+LV D+
Sbjct: 3   LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVL 171
           +I  L+ +             I DGFPRTVKQAE L+E+++     +D V+  ++ ++V+
Sbjct: 63  LIIALIEEVFPK-----HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV 117
Query: 172 LEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK 231
           +E+  GRR+  + G  ++V          NP        PP     K+I R DD  EV+K
Sbjct: 118 IERLSGRRINPETGEVYHVKY--------NPP-------PPG---VKVIQREDDKPEVIK 159
Query: 232 ERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           +RL VY E++ P+ E+Y+ +G L   D    + E + ++LE +
Sbjct: 160 KRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI 202

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 24/206 (11%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           V +G PG GKGT A R+ +  G+PHI+TGD+ R                +++G+LV DE+
Sbjct: 4   VLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
              ++ +RL       E GF+LDGFPRTV QAE LEE+++     ID V+N+++ ++ L+
Sbjct: 64  TIGIVRERLSKSDC--ERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELM 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDTEEV 229
           E+  GRR+CS CG  +++                 P   P  C     +L  RADD EE 
Sbjct: 122 ERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDNEET 167
Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLL 255
           V +RL V  +++ P+  FY ++  L+
Sbjct: 168 VTKRLEVNMKQTAPLLAFYDSKEVLV 193

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 30/212 (14%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           V +G PG GKGT A ++ +   +PHI+TGD+ R                ++QG LV DE+
Sbjct: 4   VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
              ++ +RL       + GF+LDGFPRTV QA+ L+ ++      +D V+N+K+ ++ L+
Sbjct: 64  TIGIVHERLSKDDC--QKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITRADDT 226
           ++  GR +C  CG  ++                     PPA          +L  R DD 
Sbjct: 122 KRLTGRWICKTCGATYHTI-----------------FNPPAVEGICDKDGGELYQRIDDK 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD 258
            E VK RL V  +++QP+ +FY  +G L + D
Sbjct: 165 PETVKNRLDVNMKQTQPLLDFYSQKGVLKDID 196

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 22/210 (10%)
Query: 56  QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSD 115
           +++FLG PG GKGT +  L K     H++TGDL+R               I+N+GKLV D
Sbjct: 31  RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDV 170
           +++ +L+ ++L+  Q   + GFILDG+PR VKQAE L +++      +D V    + ++V
Sbjct: 91  QMVLSLVDEKLKTPQC--KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEV 148
Query: 171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSK--LITRADDTEE 228
           L+ +  GR +    G  ++              I   P +P    ++   LI R DD E+
Sbjct: 149 LVNRISGRLIHKPSGRIYH-------------KIFNPPKVPFRDDVTNEPLIQREDDNED 195
Query: 229 VVKERLRVYNEKSQPVEEFYRNRGKLLEFD 258
           V+K+RL V+  ++ P+  +Y+N+  L+  D
Sbjct: 196 VLKKRLTVFKSETSPLISYYKNKNLLINLD 225

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           ++ + LG PG GKGT A  + +  G+P I+TGD++R               I++ GKLV+
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
           DE++  L+ +R+   Q    +GF+LDGFPRT+ QA+ ++E  +++D V+   + ++++++
Sbjct: 61  DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
           + +GRR+ +  G  ++V   N     G   ++            +L TR DD EE V++R
Sbjct: 119 RIVGRRVHAPSGRVYHV-KFNPPKVEGKDDVT----------GEELTTRKDDQEETVRKR 167
Query: 234 LRVYNEKSQPVEEFY 248
           L  Y++ + P+  +Y
Sbjct: 168 LVEYHQMTAPLIGYY 182

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 32/225 (14%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           V +G PG GKGT A R+ +  G PHI+TGD+ R                ++QG LV DE+
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
              ++ +RL       ++GF+LDGFPRTV QAE L++++      I+ V+N+++ ++ L+
Sbjct: 64  TIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSK-------LITRADD 225
            +  GRR+C  CG ++++                  L  P     K       L  RADD
Sbjct: 122 ARLTGRRICKVCGTSYHL------------------LFNPPQVEGKCDKDGGELYQRADD 163
Query: 226 TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270
             + V  RL V   ++ P+  FY ++  L+  +    I + +  L
Sbjct: 164 NPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDL 208

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)
Query: 53  RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
           R ++   +G PG GKGT +SR++K   + H+++GDL+R                ++QGKL
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLL 172
           + D+++  L+   L+      +  ++LDGFPRT+ QAE L+    ID V+NL +  +V+ 
Sbjct: 65  IPDDVMTRLVLHELKNLT---QYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIK 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           ++   R +    G  +N+   N     G   ++  P          L+ R DD  E V +
Sbjct: 122 QRLTARWIHPGSGRVYNI-EFNPPKTMGIDDLTGEP----------LVQREDDRPETVVK 170
Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEF 257
           RL+ Y  +++PV E+YR +G L  F
Sbjct: 171 RLKAYEAQTEPVLEYYRKKGVLETF 195

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 110/197 (55%), Gaps = 18/197 (9%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           ++ + LG PG GKGT A  + +  G+P I+TGD++R               I++ GKLV+
Sbjct: 1   MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
           DE++  L+ +R+   Q    +GF+LDGFPRT+ QA+ ++E  +++D V+   + ++++++
Sbjct: 61  DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVA--NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK 231
           + +GRR+ +  G  ++V      V+G +                  +L TR DD EE V+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTG-------------EELTTRKDDQEETVR 165
Query: 232 ERLRVYNEKSQPVEEFY 248
           +RL  Y++ + P+  +Y
Sbjct: 166 KRLVEYHQMTAPLIGYY 182

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 31/233 (13%)
Query: 54  NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
           +++ V +G PG GKGT A  L +     H+ATGD++R               I++QG LV
Sbjct: 4   SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLV 63
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCE 168
           SD+I+ N++   L    A  ++GFILDGFPRT+ QAE L++++      ++  + LK+ +
Sbjct: 64  SDDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 169 DVLLEKCLGRRMCSQCGGNFN-VANINVKGGNGNPSISMAPLLPPAHCMSK------LIT 221
           ++L+ +  GR +    G +++ + N                  PP   M        L+ 
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFN------------------PPKEDMKDDVTGEALVQ 164
Query: 222 RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           R+DD  + +K+RL  Y+ +++P+ +FY+  G     D        W  +L  L
Sbjct: 165 RSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)
Query: 53  RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
           R ++ V +G PG GKGT +SR++    + H+++GDL+R                ++QGKL
Sbjct: 6   RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKL 65
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLL 172
           + D+++  L    L+      +  ++LDGFPRT+ QAE L+    ID V+NL +  +V+ 
Sbjct: 66  IPDDVMTRLALHELKNLT---QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIK 122
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           ++   R +    G  +N+   N     G   ++  P          LI R DD  E V +
Sbjct: 123 QRLTARWIHPASGRVYNI-EFNPPKTVGIDDLTGEP----------LIQREDDKPETVIK 171
Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEF 257
           RL+ Y ++++PV E+Y+ +G L  F
Sbjct: 172 RLKAYEDQTKPVLEYYQKKGVLETF 196

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 31/233 (13%)
Query: 54  NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
           +++ V +G PG GKGT A  L +     H+ATGD++R               I++QG LV
Sbjct: 4   SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLV 63
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCE 168
           SD+I+ N++   L    A  ++GFILDGFPRT+ QAE L++++      ++  + LK+ +
Sbjct: 64  SDDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 169 DVLLEKCLGRRMCSQCGGNFN-VANINVKGGNGNPSISMAPLLPPAHCMSK------LIT 221
           ++L+ +  GR +    G +++ + N                  PP   M        L+ 
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFN------------------PPKEDMKDDVTGEALVQ 164
Query: 222 RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           R+DD  + +K+RL  Y+ +++P+ +FY+  G     D        W   L  L
Sbjct: 165 RSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADFLNKL 217

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           ++ + LG P  GKGT A  + +  G+P I+TGD++R               I++ GKLV+
Sbjct: 1   MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
           DE++  L+ +R+   Q    +GF+LDGFPRT+ QA+ ++E  +++D V+   + ++++++
Sbjct: 61  DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
           + +GRR+ +  G  ++V   N     G   ++            +L TR DD EE V++R
Sbjct: 119 RIVGRRVHAPSGRVYHV-KFNPPKVEGKDDVT----------GEELTTRKDDQEETVRKR 167
Query: 234 LRVYNEKSQPVEEFY 248
           L  Y++ + P+  +Y
Sbjct: 168 LVEYHQMTAPLIGYY 182

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 51/230 (22%)
Query: 50  PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQ 109
           P+  +++ + LG PG GKGT A +L++ LG+P I+TG+L R                ++ 
Sbjct: 16  PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDA 75
Query: 110 GKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNL 164
           G LV  ++   L+  RL    A   +GFILDG+PR+V+QA+ L E++     DID V+  
Sbjct: 76  GDLVPSDLTNELVDDRLNNPDAA--NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEF 133
Query: 165 KLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD 224
           ++ E+VLLE+  GR                                           RAD
Sbjct: 134 RVSEEVLLERLKGR------------------------------------------GRAD 151
Query: 225 DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           DT++V+  R++VY +++ P+ E+YR+  +L   D  G + E + + L AL
Sbjct: 152 DTDDVILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRAL 199

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%)
Query: 56  QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSD 115
           + + LG PG GKGT A+ + +  G+P I+TGD +R                 ++GKLV D
Sbjct: 10  RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEK 174
            +I  L+ +RL+  +A   +G++ DGFPRT+ QA+  +E  + ID V+ + +    ++E+
Sbjct: 70  SLIIGLVKERLK--EADCANGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIER 127
Query: 175 CLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERL 234
             GRR     G  ++V   N     G   ++  P          L+ R DD EE VK+RL
Sbjct: 128 XSGRRTHPASGRTYHV-KFNPPKVEGKDDVTGEP----------LVQRDDDKEETVKKRL 176
Query: 235 RVYNEKSQPVEEFY 248
            VY  +++P+  +Y
Sbjct: 177 DVYEAQTKPLITYY 190

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 51/225 (22%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           ++ + LG PG GKGT A +L++ LG+P I+TG+L R                ++ G LV 
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
            ++   L+  RL    A   +GFILDG+PR+V+QA+ L E++     DID V+  ++ E+
Sbjct: 61  SDLTNELVDDRLNNPDAA--NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEV 229
           VLLE+  GR                                           RADDT++V
Sbjct: 119 VLLERLKGR------------------------------------------GRADDTDDV 136
Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           +  R++VY +++ P+ E+YR+  +L   D  G + E + + L AL
Sbjct: 137 ILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRAL 179

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 108/195 (55%), Gaps = 14/195 (7%)
Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
           ++ + LG    GKGT A  + +  G+P I+TGD++R               I++ GKLV+
Sbjct: 1   MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
           DE++  L+ +R+   Q    +GF+LDGFPRT+ QA+ ++E  +++D V+   + ++++++
Sbjct: 61  DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
           + +GRR+ +  G  ++V   N     G   ++            +L TR DD EE V++R
Sbjct: 119 RIVGRRVHAPSGRVYHV-KFNPPKVEGKDDVT----------GEELTTRKDDQEETVRKR 167
Query: 234 LRVYNEKSQPVEEFY 248
           L  Y++ + P+  +Y
Sbjct: 168 LVEYHQMTAPLIGYY 182

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 31/233 (13%)
Query: 54  NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
           +++ V +G PG GKGT A  L +     H+ATGD++R               I++QG LV
Sbjct: 4   SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLV 63
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCE 168
           SD+I+ N++   L    A  ++GFIL GFPRT+ QAE L++++      ++  + LK+ +
Sbjct: 64  SDDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 169 DVLLEKCLGRRMCSQCGGNFN-VANINVKGGNGNPSISMAPLLPPAHCMSK------LIT 221
           ++L+ +  GR +    G +++ + N                  PP   M        L+ 
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFN------------------PPKEDMKDDVTGEALVQ 164
Query: 222 RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
            +DD  + +K+RL  Y+ +++P+ +FY+  G     D        W  +L  L
Sbjct: 165 ISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           V LG PG GKGT   R+++  G+ H+++G  +R                + +  LV D +
Sbjct: 31  VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           I  L+   LE  +      ++LDGFPRT+ QAE L+++ ++DLV++L +  + L ++ L 
Sbjct: 91  ITRLMMSELENRRG---QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDR-LS 146
Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
           RR      G     + N    +G   ++  P          L+ + DD  E V  RLR Y
Sbjct: 147 RRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP----------LVQQEDDKPEAVAARLRQY 196
Query: 238 NEKSQPVEEFYRNRGKLLEF 257
            + ++PV E Y++RG L +F
Sbjct: 197 KDVAKPVIELYKSRGVLHQF 216

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           V LG PG GKGT   R+++  G+ H+++G  +R                + +  LV D +
Sbjct: 9   VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           I  L+   LE  +      ++LDGFPRT+ QAE L+++ ++DLV++L +  + L ++ L 
Sbjct: 69  ITRLMMSELENRRG---QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDR-LS 124
Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
           RR      G     + N    +G   ++  P          L+ + DD  E V  R R Y
Sbjct: 125 RRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP----------LVQQEDDKPEAVAARPRQY 174
Query: 238 NEKSQPVEEFYRNRGKLLEF 257
            + ++PV E Y++RG L +F
Sbjct: 175 KDVAKPVIELYKSRGVLHQF 194

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 18/202 (8%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           + +G PG GKGT    + K  G+ H++TGD++R               I+  G  V DEI
Sbjct: 9   ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAE----ILEEVMD-IDLVVNLKLCEDVLL 172
           +  L+ ++ + G     +GF+LDGFPRT+ QAE    IL E+ D +  V+  ++ +  ++
Sbjct: 69  VLGLVKEKFDLGVC--VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+  GR      G  ++V   N     G   ++  P          L+ R DD  E VK 
Sbjct: 127 ERISGRCTHPASGRIYHV-KYNPPKQPGIDDVTGEP----------LVWRDDDNAEAVKV 175
Query: 233 RLRVYNEKSQPVEEFYRNRGKL 254
           RL V+++++ P+ +FY + G L
Sbjct: 176 RLDVFHKQTAPLVKFYEDLGIL 197

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 40/219 (18%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           +FLG PG GKGT ASRL++ LG   ++TGD++R               I+ +G LV D++
Sbjct: 8   IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL 67
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           I  L+ + L           I DGFPRT+ QAE L+                        
Sbjct: 68  ILELIREEL-------AERVIFDGFPRTLAQAEALD------------------------ 96
Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
            R+ S+ G            G     +    L+      ++L  R+DD EE V+ RL VY
Sbjct: 97  -RLLSETGTRLL--------GVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVY 147
Query: 238 NEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276
            EK++P+  +Y  RG L   D  G   E + ++  AL +
Sbjct: 148 REKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALGI 186

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 21/193 (10%)
Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEIIFN 120
           G P  GKGT    +     + HI+ GDL+R                + +G+LV DEI+ N
Sbjct: 12  GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRR 179
           ++ +RL    A  E+G++LDG+PR+  QA  LE + +  D  + L + +++L+E+ +GRR
Sbjct: 72  MVKERLRQPDA-QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRR 130
Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH--CMSKLITRADDTEEVVKERLRVY 237
           +    G  +++                    PP +    S+L  R DDTEE VK RL  Y
Sbjct: 131 LDPVTGKIYHLK-----------------YSPPENEEIASRLTQRFDDTEEKVKLRLETY 173
Query: 238 NEKSQPVEEFYRN 250
            +  + +   Y N
Sbjct: 174 YQNIESLLSTYEN 186

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 51/231 (22%)
Query: 51  KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQG 110
           K  N+ +V +G PG GKGT   ++ +  G  H++TGDL+R               I+ +G
Sbjct: 7   KKTNIIFV-VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKG 65
Query: 111 KLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDV 170
           +LV  E + ++L   + A +     GF++DG+PR V+Q E  E                 
Sbjct: 66  QLVPLETVLDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFE----------------- 107
Query: 171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRA------D 224
                  RR+                   G P++ +     P     +L+ R       D
Sbjct: 108 -------RRI-------------------GQPTLLLYVDAGPETMTQRLLKRGETSGRVD 141
Query: 225 DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           D EE +K+RL  Y + ++PV  FY  RG + + +  G +   + ++   L+
Sbjct: 142 DNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 38/216 (17%)
Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEIIF 119
           +G PG GKGT   ++ +  G  H++TGDL+R               I+ +G+LV  E + 
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179
           ++L   + A +     GF++DG+PR VKQ E  E           K+ +  LL       
Sbjct: 75  DMLRDAMVA-KVDTSKGFLIDGYPREVKQGEEFER----------KIGQPTLL------- 116
Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE 239
                        + V  G   P      LL           R DD EE +K+RL  Y +
Sbjct: 117 -------------LYVDAG---PETMTKRLLKRGETSG----RVDDNEETIKKRLETYYK 156
Query: 240 KSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
            ++PV  FY  RG + + +  G + + + ++   L+
Sbjct: 157 ATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLD 192

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 40/212 (18%)
Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEIIF 119
           LG PG GKGT   +L +     H+++GDL+R               ++ +G+LV  E++ 
Sbjct: 35  LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE-EVMDIDLVVNLKLCEDVLLEKCLGR 178
            LL + +          F++DG+PR + Q    E EV     V+N  + E+V+ ++ L R
Sbjct: 95  ALLKEAM-IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKR 153
Query: 179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYN 238
              S                                       R DD EE + +R R +N
Sbjct: 154 AETS--------------------------------------NRVDDNEETIVKRFRTFN 175
Query: 239 EKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270
           E ++PV E Y+ + K++  D  G +   + K+
Sbjct: 176 ELTKPVIEHYKQQNKVITIDASGTVDAIFDKV 207

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 41/225 (18%)
Query: 53  RNVQWVFL-GCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGK 111
           R  + +F+ G PG GKGT   +L +  G  H++TG+L+R               I+ +G 
Sbjct: 10  RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGD 69
Query: 112 LVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEIL-EEVMDIDLVVNLKLCEDV 170
           LV   I+  LL + + A   G   GF++DG+PR VKQ E     + D  LV+ +    D 
Sbjct: 70  LVPSGIVLELLKEAMVA-SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADT 128
Query: 171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVV 230
           +  + L                                       MS+     DDT + +
Sbjct: 129 MTNRLLQ--------------------------------------MSRSSLPVDDTTKTI 150
Query: 231 KERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
            +RL  Y   S PV  +Y  + +L + +  G   + + +L  A++
Sbjct: 151 AKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 41/228 (17%)
Query: 49  APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXX-XXXXXXXXXXXXIV 107
           +P   +V +V LG PG GKGT   +L K     H++ GDL+R                 +
Sbjct: 11  SPDQVSVIFV-LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCI 69
Query: 108 NQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE-EVMDIDLVVNLKL 166
            +G++V  EI   LL   +       +  F++DGFPR + QA   E ++++   ++    
Sbjct: 70  KEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDC 129
Query: 167 CEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDT 226
            ED++LE+ L R                                       K   R+DD 
Sbjct: 130 PEDIMLERLLER--------------------------------------GKTSGRSDDN 151
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
            E +K+R   + E S PV E++  + K++       + + +  + +A+
Sbjct: 152 IESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 45/223 (20%)
Query: 60  LGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXX-XXXXXXXXXXIVNQGKLVSDEII 118
           LG PG GKGT  +R+ +  G  H++ G+L+R                 + +GK+V  EI 
Sbjct: 9   LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 119 FNLLSKRLEAGQAGG--ESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLL 172
            +LL + ++   A    ++ F++DGFPR     +   + M    D+  V+      ++ +
Sbjct: 69  ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+CL R   S                                       R+DD  E +++
Sbjct: 129 ERCLERGKSS--------------------------------------GRSDDNRESLEK 150
Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           R++ Y + ++P+ + Y   GK+ + D    + E + ++++  +
Sbjct: 151 RIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           +  G  G GKGT  + +     + HI +G + R                +++G LV D+I
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEIL-----EEVMDIDLVVNLKLCEDVLL 172
              ++   LE  ++ G+ G++LDGFPR   QA+ L     E+ M I+ V+ + L  +V  
Sbjct: 64  TIPMV---LETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEE-VVK 231
            + +GRR+C     + N  NI ++    N  +          C   L  RADD +E  + 
Sbjct: 121 NRIMGRRICKNNPNHPN--NIFIEAIKPNGDVCRV-------CGGALSARADDQDEGAIN 171
Query: 232 ERLRVYN---EKSQPVEEFYRNRGK-----LLEFDLPGGIPESWPKLLEAL 274
           +R  +Y    + +     +Y+N         +E D  G I      LL  L
Sbjct: 172 KRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
           +  G  G GKGT  + +     + HI +G + R                +++G LV D+I
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEIL-----EEVMDIDLVVNLKLCEDVLL 172
              ++   LE  ++ G+ G++LDGFPR   QA+ L     E+ M I+ V+ + L  +V  
Sbjct: 64  TIPMV---LETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEE-VVK 231
            + +GRR+C     + N   I+    NG+             C   L  RADD +E  + 
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIDAIKPNGDVC---------RVCGGALSARADDQDEGAIN 171
Query: 232 ERLRVYN---EKSQPVEEFYRNRGK-----LLEFDLPGGIPESWPKLLEAL 274
           +R  +Y    + +     +Y+N         +E D  G I      LL  L
Sbjct: 172 KRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 54  NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
           NV +V LG PG GKGT  + + +  G  H++ GDL+R               ++  G++V
Sbjct: 7   NVVFV-LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPR----TVKQAEILEEVMDIDLVVNLKLCED 169
              +   LL   ++A Q      F++DGFPR         E +++ +D   V+     E+
Sbjct: 66  PSIVTVKLLKNAIDANQG---KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122
Query: 170 VLLEKCLGR 178
           V+ ++ L R
Sbjct: 123 VMTQRLLKR 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	2e-73
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	1e-72
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	3e-72
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	5e-72
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	3e-71
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	4e-71
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	6e-71
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	8e-71
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	1e-69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	5e-69
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	2e-68
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	1e-67
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	5e-63
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	1e-59
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	2e-59
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	2e-59
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	5e-59
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	3e-58
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	1e-57
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	1e-55
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	1e-19
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	2e-15
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	5e-10
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	1e-07
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	5e-06
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	8e-05

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  224 bits (573), Expect = 2e-73
 Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 27/238 (11%)

Query: 44  NFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQL 103
           N   ++   + ++ V LG PG GKGT   R+++  G+ H+++G  +RE + +S  + +  
Sbjct: 17  NLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMA 76

Query: 104 SEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVN 163
            + + +  LV D +I  L+   LE  +      ++LDGFPRT+ QAE L+++ ++DLV++
Sbjct: 77  KQYIEKSLLVPDHVITRLMMSELENRRG---QHWLLDGFPRTLGQAEALDKICEVDLVIS 133

Query: 164 LKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSK 218
           L +  + L ++   R +    G  +N+          NP        P  H         
Sbjct: 134 LNIPFETLKDRLSRRWIHPPSGRVYNLDF--------NP--------PHVHGIDDVTGEP 177

Query: 219 LITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWPKLLEALN 275
           L+ + DD  E V  RLR Y + ++PV E Y++RG L +F   G    + WP +    +
Sbjct: 178 LVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFS--GTETNKIWPYVYTLFS 233

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  222 bits (567), Expect = 1e-72
 Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 28/236 (11%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           V +G PG GKGT +SR++    + H+++GDL+R+ +     +       ++QGKL+ D++
Sbjct: 11  VIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDV 70

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           +  L    L+         ++LDGFPRT+ QAE L+    ID V+NL +  +V+ ++   
Sbjct: 71  MTRLALHELKNLTQ---YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTA 127

Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRADDTEEVVKE 232
           R +    G  +N+          NP        P            LI R DD  E V +
Sbjct: 128 RWIHPASGRVYNIEF--------NP--------PKTVGIDDLTGEPLIQREDDKPETVIK 171

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWPKLLEALNLDEYEEKQSAAA 287
           RL+ Y ++++PV E+Y+ +G L  F   G    + WP +   L   +  ++   A+
Sbjct: 172 RLKAYEDQTKPVLEYYQKKGVLETFS--GTETNKIWPYVYAFLQ-TKVPQRSQKAS 224

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  221 bits (565), Expect = 3e-72
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 28/228 (12%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +FLG PG GKGT +  L K     H++TGDL+RE       L  ++  I+N+GKLV D++
Sbjct: 33  IFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQM 92

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           + +L+ ++L+      + GFILDG+PR VKQAE L +++      +D V    + ++VL+
Sbjct: 93  VLSLVDEKLK--TPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLV 150

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRADDTE 227
            +  GR +    G  ++           NP        P            LI R DD E
Sbjct: 151 NRISGRLIHKPSGRIYHKIF--------NP--------PKVPFRDDVTNEPLIQREDDNE 194

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           +V+K+RL V+  ++ P+  +Y+N+  L+  D      +   K+ + ++
Sbjct: 195 DVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  219 bits (561), Expect = 5e-72
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 28/227 (12%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + +G PG GKGT    + K  G+ H++TGD++RE + +   +  +   I+  G  V DEI
Sbjct: 9   ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           +  L+ ++ +       +GF+LDGFPRT+ QAE L +++      +  V+  ++ +  ++
Sbjct: 69  VLGLVKEKFD--LGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRADDTE 227
           E+  GR      G  ++V          NP        P            L+ R DD  
Sbjct: 127 ERISGRCTHPASGRIYHVKY--------NP--------PKQPGIDDVTGEPLVWRDDDNA 170

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           E VK RL V+++++ P+ +FY + G L   +      E   ++ + L
Sbjct: 171 EAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  218 bits (557), Expect = 3e-71
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 28/227 (12%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           V +G PG GKGT A ++ +   +PHI+TGD+ R  + +   L  +    ++QG LV DE+
Sbjct: 4   VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
              ++ +RL   +   + GF+LDGFPRTV QA+ L+ ++      +D V+N+K+ ++ L+
Sbjct: 64  TIGIVHERLS--KDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRADDTE 227
           ++  GR +C  CG  ++           NP        P           +L  R DD  
Sbjct: 122 KRLTGRWICKTCGATYHTIF--------NP--------PAVEGICDKDGGELYQRIDDKP 165

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           E VK RL V  +++QP+ +FY  +G L + D    I + +  + + L
Sbjct: 166 ETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLL 212

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  218 bits (557), Expect = 4e-71
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 28/228 (12%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           V LG PG GKGT A +L+K   V H+ATGD++R  +AS   L ++L   ++ GKLVSDE+
Sbjct: 20  VLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEM 79

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           +  L+ K LE      ++GF+LDGFPRTV+QAE+L+++M+     +D V+   + + +L+
Sbjct: 80  VLELIEKNLE--TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRADDTE 227
            +  GR +  Q G +++           NP        P            LI R+DD +
Sbjct: 138 RRITGRLIHPQSGRSYHEEF--------NP--------PKEPMKDDITGEPLIRRSDDNK 181

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           + +K RL  Y+ ++ P+ E+Y  RG     D        +  +L A +
Sbjct: 182 KALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 229

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  217 bits (554), Expect = 6e-71
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 30/228 (13%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           V +G PG GKGT   R+ +  G+PHI+TGD+ R  +     L  +    +++G+LV DE+
Sbjct: 4   VLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
              ++ +RL   +   E GF+LDGFPRTV QAE LEE+++     ID V+N+++ +DVL+
Sbjct: 64  TIGIVKERLG--KDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLM 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH------CMSKLITRADDT 226
           E+  GRR+CS CG  +++                    PP           +L  RADD 
Sbjct: 122 ERLTGRRICSVCGTTYHLVFN-----------------PPKTPGICDKDGGELYQRADDN 164

Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           EE V +RL V  +++ P+ +FY  +G L+  +    I + +  L   L
Sbjct: 165 EETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLL 212

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  217 bits (554), Expect = 8e-71
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 27/228 (11%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           V +G PG GKGT A  L +     H+ATGD++R ++A    L  +  +I++QG LVSD+I
Sbjct: 8   VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 67

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           + N++   L       ++GFILDGFPRT+ QAE L++++      ++  + LK+ +++L+
Sbjct: 68  MVNMIKDEL-TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLV 126

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRADDTE 227
            +  GR +    G +++           NP        P            L+ R+DD  
Sbjct: 127 ARITGRLIHPASGRSYHKIF--------NP--------PKEDMKDDVTGEALVQRSDDNA 170

Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           + +K+RL  Y+ +++P+ +FY+  G     D        W  +L  L 
Sbjct: 171 DALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  213 bits (545), Expect = 1e-69
 Identities = 77/222 (34%), Positives = 122/222 (54%), Gaps = 28/222 (12%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           VFLG PG GKGT A RL+K  G  HI+TGD++RE +     L ++  E + +G+LV D++
Sbjct: 4   VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           I  L+ +             I DGFPRTVKQAE L+E+++     +D V+  ++ ++V++
Sbjct: 64  IIALIEEVFPK-----HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+  GRR+  + G  ++V                    PP     K+I R DD  EV+K+
Sbjct: 119 ERLSGRRINPETGEVYHVKYN-----------------PPP-PGVKVIQREDDKPEVIKK 160

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
           RL VY E++ P+ E+Y+ +G L   D    + E + ++LE +
Sbjct: 161 RLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI 202

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  212 bits (541), Expect = 5e-69
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 29/228 (12%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + LG P  GKGT A  + +  G+P I+TGD++R  + S   L +Q  +I++ GKLV+DE+
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCL 176
           +  L+ +R+   Q    +GF+LDGFPRT+ QA+ ++E  +++D V+   + +++++++ +
Sbjct: 64  VIALVKERIA--QEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIV 121

Query: 177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRADDTEEVVK 231
           GRR+ +  G  ++V          NP        P           +L TR DD EE V+
Sbjct: 122 GRRVHAPSGRVYHVKF--------NP--------PKVEGKDDVTGEELTTRKDDQEETVR 165

Query: 232 ERLRVYNEKSQPVEEFYRNRG-----KLLEFDLPGGIPESWPKLLEAL 274
           +RL  Y++ + P+  +Y         K  + D    + E    L + L
Sbjct: 166 KRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  210 bits (538), Expect = 2e-68
 Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 35/242 (14%)

Query: 50  PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ 109
               +++ + LG PG GKGT A+ + +  G+P I+TGD++R  + +   L  +    +++
Sbjct: 4   HHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDE 63

Query: 110 GKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCE 168
           GKLV D +I  L+ +RL+  +A   +G++ DGFPRT+ QA+ ++E  + ID V+ + +  
Sbjct: 64  GKLVPDSLIIGLVKERLK--EADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPF 121

Query: 169 DVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH-----CMSKLITRA 223
             ++E+  GRR     G  ++V          NP        P            L+ R 
Sbjct: 122 SEIIERMSGRRTHPASGRTYHVKF--------NP--------PKVEGKDDVTGEPLVQRD 165

Query: 224 DDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-----------GGIPESWPKLLE 272
           DD EE VK+RL VY  +++P+  +Y +  +    +             G + E   ++  
Sbjct: 166 DDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRR 225

Query: 273 AL 274
           A 
Sbjct: 226 AQ 227

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  208 bits (533), Expect = 1e-67
 Identities = 63/232 (27%), Positives = 115/232 (49%), Gaps = 20/232 (8%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +  G P  GKGT    +     + HI+ GDL+R E+A+     ++  E + +G+LV DEI
Sbjct: 9   MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEI 68

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCL 176
           + N++ +RL    A  E+G++LDG+PR+  QA  LE + +  D  + L + +++L+E+ +
Sbjct: 69  VVNMVKERLRQPDA-QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVV 127

Query: 177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV 236
           GRR+    G  +++          +P              S+L  R DDTEE VK RL  
Sbjct: 128 GRRLDPVTGKIYHLKY--------SPP-------ENEEIASRLTQRFDDTEEKVKLRLET 172

Query: 237 YNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL-NLDEYEEKQSAAA 287
           Y +  + +   Y     +++      +   + K+ E L ++ E + +  ++ 
Sbjct: 173 YYQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST 222

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  197 bits (502), Expect = 5e-63
 Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 26/231 (11%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +  G  G GKGT  + +     + HI +G + RE +     L ++  E +++G LV D+I
Sbjct: 4   LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
              ++ + L   ++ G+ G++LDGFPR   QA+ L E +      I+ V+ + L  +V  
Sbjct: 64  TIPMVLETL---ESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEE-VVK 231
            + +GRR+C     + N   I+    NG+             C   L  RADD +E  + 
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRV---------CGGALSARADDQDEGAIN 171

Query: 232 ERLRVYNEKSQPV---EEFYRNRG-----KLLEFDLPGGIPESWPKLLEAL 274
           +R  +Y            +Y+N         +E D  G I      LL  L
Sbjct: 172 KRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  187 bits (478), Expect = 1e-59
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 40/220 (18%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGS-LSQQLSEIVNQGKLVSDE 116
             LG PG GKGT   +L K     H++ GDL+R E   +GS   + +   + +G++V  E
Sbjct: 19  FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78

Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKC 175
           I   LL   +       +  F++DGFPR + QA   E  + +   ++     ED++LE+ 
Sbjct: 79  ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERL 138

Query: 176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLR 235
           L R   S                                       R+DD  E +K+R  
Sbjct: 139 LERGKTSG--------------------------------------RSDDNIESIKKRFN 160

Query: 236 VYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
            + E S PV E++  + K++       + + +  + +A+ 
Sbjct: 161 TFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  187 bits (477), Expect = 2e-59
 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 40/219 (18%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
             +G PG GKGT   ++ +  G  H++TGDL+R E++S  +  ++LSEI+ +G+LV  E 
Sbjct: 13  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCL 176
           + ++L   + A +     GF++DG+PR V+Q E  E  +    L++ +    + + ++ L
Sbjct: 73  VLDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLL 131

Query: 177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV 236
            R   S                                       R DD EE +K+RL  
Sbjct: 132 KRGETSG--------------------------------------RVDDNEETIKKRLET 153

Query: 237 YNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           Y + ++PV  FY  RG + + +  G +   + ++   L+
Sbjct: 154 YYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  186 bits (476), Expect = 2e-59
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 50/224 (22%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +FLG PG GKGT ASRL++ LG   ++TGD++R+ +A    L +++  I+ +G LV D++
Sbjct: 8   IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL 67

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
           I  L+ + L           I DGFPRT+ QAE L+ ++      +  VV +++ E+ L+
Sbjct: 68  ILELIREEL-------AERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELV 120

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
            + L R                                           R+DD EE V+ 
Sbjct: 121 RRILRRAELEG--------------------------------------RSDDNEETVRR 142

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276
           RL VY EK++P+  +Y  RG L   D  G   E + ++  AL +
Sbjct: 143 RLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALGI 186

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  186 bits (474), Expect = 5e-59
 Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 42/233 (18%)

Query: 44  NFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQL 103
            F     K + +    +G PG GKGT   +L +  G  H++TG+L+REELAS    S+ +
Sbjct: 4   GFMEDLRKCKII--FIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLI 61

Query: 104 SEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVV 162
            +I+ +G LV   I+  LL + + A   G   GF++DG+PR VKQ E     + D  LV+
Sbjct: 62  RDIMERGDLVPSGIVLELLKEAMVA-SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVI 120

Query: 163 NLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITR 222
            +    D +  + L     S                                        
Sbjct: 121 CMDCSADTMTNRLLQMSRSSL--------------------------------------P 142

Query: 223 ADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
            DDT + + +RL  Y   S PV  +Y  + +L + +  G   + + +L  A++
Sbjct: 143 VDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  184 bits (469), Expect = 3e-58
 Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 51/239 (21%)

Query: 41  QNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLS 100
            +H+ +   P+  +++ + LG PG GKGT A +L++ LG+P I+TG+L R  +     L 
Sbjct: 7   HHHHSSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLG 66

Query: 101 QQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--- 157
            +    ++ G LV  ++   L+  RL    A   +GFILDG+PR+V+QA+ L E+++   
Sbjct: 67  VEAKRYLDAGDLVPSDLTNELVDDRLNNPDA--ANGFILDGYPRSVEQAKALHEMLERRG 124

Query: 158 --IDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC 215
             ID V+  ++ E+VLLE+  GR                                     
Sbjct: 125 TDIDAVLEFRVSEEVLLERLKGRG------------------------------------ 148

Query: 216 MSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
                 RADDT++V+  R++VY +++ P+ E+YR+  +L   D  G + E + + L AL
Sbjct: 149 ------RADDTDDVILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRAL 199

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  182 bits (464), Expect = 1e-57
 Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 47/232 (20%)

Query: 51  KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGS-LSQQLSEIVNQ 109
           K   V    LG PG GKGT  +R+ +  G  H++ G+L+R+E  +  S   + + + + +
Sbjct: 2   KPLVV--FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKE 59

Query: 110 GKLVSDEIIFNLLSKRLEAGQA--GGESGFILDGFPRTVKQAEILEEVM----DIDLVVN 163
           GK+V  EI  +LL + ++   A    ++ F++DGFPR     +   + M    D+  V+ 
Sbjct: 60  GKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 119

Query: 164 LKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRA 223
                ++ +E+CL R   S                                       R+
Sbjct: 120 FDCNNEICIERCLERGKSSG--------------------------------------RS 141

Query: 224 DDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           DD  E +++R++ Y + ++P+ + Y   GK+ + D    + E + ++++  +
Sbjct: 142 DDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  176 bits (450), Expect = 1e-55
 Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 45/221 (20%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
             LG PG GKGT  + + +  G  H++ GDL+R+E  S     + ++ ++  G++V   +
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLE 173
              LL   ++A Q      F++DGFPR  +     EE M    D   V+     E+V+ +
Sbjct: 70  TVKLLKNAIDANQG---KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQ 126

Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
           + L R   S                                       R+DD  E +K+R
Sbjct: 127 RLLKRGESSG--------------------------------------RSDDNIESIKKR 148

Query: 234 LRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
              +N +++ V + Y    K+        + E +  +    
Sbjct: 149 FNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 189

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 83.5 bits (206), Expect = 1e-19
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 57  WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDE 116
           ++  G  GVGK T   RL+  L       GD++   +        +  E      L    
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE---LLALTWKN 61

Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVL 171
           I  +L    L A      +  +LD      +   + + V           + L    + L
Sbjct: 62  IT-DLTVNFLLAQ-----NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREEL 115

Query: 172 LEKCLGRRMCSQCG 185
           L +   R+   Q G
Sbjct: 116 LRRDALRKKDEQMG 129

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 59  FLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEI 117
             G PG GK  +A  L +  G   I   D+VR+  +      ++L +   +  ++  D +
Sbjct: 6   ITGMPGSGKSEFAKLLKE-RGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGV 64

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCL 176
           +  L  + L           + DG  R++ + E  + ++ D   +V +     +  ++ +
Sbjct: 65  VARLCVEELGTSN---HDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMI 120

Query: 177 GRRM 180
            R  
Sbjct: 121 ERLR 124

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 56.6 bits (136), Expect = 5e-10
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 18/124 (14%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +  G PGVGK T    L+   G+ +I  GDL REE    G   +    I+++      + 
Sbjct: 15  LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDE------DR 68

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           + + L  ++  G      G I+D                   +V  L+   +VL E+   
Sbjct: 69  VVDELDNQMREG------GVIVDYHGCDFFPERW------FHIVFVLRTDTNVLYERLET 116

Query: 178 RRMC 181
           R   
Sbjct: 117 RGYN 120

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 22/131 (16%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-----SSGSLSQQLSEIVNQGKL 112
           +  G P  GK T +  L+  L +P ++  D  +E +      S    S+++         
Sbjct: 9   IVTGHPATGKTTLSQALATGLRLPLLSK-DAFKEVMFDGLGWSDREWSRRVGATA----- 62

Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD----IDLVVNLKLCE 168
               ++++  +  L++GQ       I++   R     E ++ +        + +      
Sbjct: 63  --IMMLYHTAATILQSGQ-----SLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASG 115

Query: 169 DVLLEKCLGRR 179
           DVL+E+ L R 
Sbjct: 116 DVLVERILSRI 126

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 11/124 (8%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQGKLVSD 115
           +  G PG GK T A  L+   GVP  H    D +   +   G +   L +   Q +++  
Sbjct: 13  LLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIK-HGRIDPWLPQSHQQNRMIMQ 70

Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC 175
                     +    A      ILDG  R             +  +V L+      +E+C
Sbjct: 71  IAA------DVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIV-LRTTAAEAIERC 123

Query: 176 LGRR 179
           L R 
Sbjct: 124 LDRG 127

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 61  GCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF 119
           G PG GK + A  ++  L G  H+  G LV+E    +   ++  + I+       +E   
Sbjct: 17  GTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHII-------EEKDE 69

Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178
           + L   +E          ++D     +             +VV L    +VL E+   R
Sbjct: 70  DRLLDFMEP-IMVSRGNHVVDYHSSELFPERW------FHMVVVLHTSTEVLFERLTKR 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	100.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	100.0
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	100.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	100.0
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	100.0
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	100.0
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	100.0
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	100.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	100.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.95
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.95
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.95
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.94
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.92
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.81
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.75
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.75
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.74
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.73
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.71
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.71
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.71
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.7
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.7
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.69
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.69
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.69
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.67
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.67
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.67
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.67
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.66
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.66
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.66
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.65
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.65
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.65
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.65
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.64
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.64
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.63
1via_A	175	Shikimate kinase; structural genomics, transferase	99.62
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.62
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.62
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.62
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.61
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.6
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.6
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.59
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.58
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.58
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.57
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.57
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.57
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.56
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.56
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.56
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.54
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.53
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.53
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.5
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.48
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.46
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.45
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.45
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.44
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.44
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.41
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.4
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.4
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.4
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.39
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.36
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.33
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.3
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.26
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.24
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.24
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.23
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.22
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.21
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.13
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.13
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.13
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.12
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.12
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.11
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.11
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.08
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.02
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.97
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.92
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.9
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.89
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.87
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.76
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.75
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.72
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.69
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.67
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.67
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.62
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.62
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.6
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.49
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.48
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.47
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.46
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.44
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.43
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.42
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.42
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.42
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.4
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.38
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.27
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.22
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.14
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.12
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.03
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.92
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.9
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.9
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.88
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.85
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.85
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	97.84
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.74
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.71
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.67
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.65
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.64
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.63
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.61
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.6
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.58
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.56
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.53
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.52
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.52
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.52
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.51
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.5
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.49
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.49
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.48
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.46
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.45
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.44
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.43
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.39
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.37
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.37
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.36
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.33
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.32
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.32
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.29
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.28
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.28
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.28
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.27
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.26
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.23
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.23
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.21
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.21
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.2
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.18
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.16
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.14
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.14
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.12
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.11
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.11
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.11
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.11
3bos_A	242	Putative DNA replication factor; P-loop containing	97.1
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.06
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.06
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.03
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.01
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.98
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.96
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.96
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.95
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.91
3pvs_A	447	Replication-associated recombination protein A; ma	96.9
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.89
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.88
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.86
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.85
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.84
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.83
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.83
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.83
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.82
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.82
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.82
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.8
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.78
3co5_A	143	Putative two-component system transcriptional RES	96.78
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.77
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.77
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.75
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.75
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.74
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.74
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.74
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.7
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.7
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.7
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.69
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.68
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.67
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.66
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.66
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.66
2qgz_A	308	Helicase loader, putative primosome component; str	96.58
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.58
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.57
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.55
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.55
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.54
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.54
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	96.53
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.53
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.53
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.52
2og2_A	359	Putative signal recognition particle receptor; nuc	96.52
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.49
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.49
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.48
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.48
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.47
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.47
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.47
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.47
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.46
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.46
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.45
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.45
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.45
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.45
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.43
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.43
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.42
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.42
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.41
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.41
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.4
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.4
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.39
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.39
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.39
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.39
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.39
1g6h_A	257	High-affinity branched-chain amino acid transport	96.38
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.38
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.38
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.37
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.37
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.37
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.37
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.37
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.37
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.37
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.37
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.35
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.35
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.35
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.35
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.35
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.35
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.35
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.34
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.34
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.33
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.33
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.33
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.32
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.32
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.31
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.31
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.31
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.3
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.29
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.29
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.29
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.28
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.27
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.26
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.26
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.26
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.26
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.25
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.24
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.24
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.23
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.23
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.23
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.22
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.22
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	96.22
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.22
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.21
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.21
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.2
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.2
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.2
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.2
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.2
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.19
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.19
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.19
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.19
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.19
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.18
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.18
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.16
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.16
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.16
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.15
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.14
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.13
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.13
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.12
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.11
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.11
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.1
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.1
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.1
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.09
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.09
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.09
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.07
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.07
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.07
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.06
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.06
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.06
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.06
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.06
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.05
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.05
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.04
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.04
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.03
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.03
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.03
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.03
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.03
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.01
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.01
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.01
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.01
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.99
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.98
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.98
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.98
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.96
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.96
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.95
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.95
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.94
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.93
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.91
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.9
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.9
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.9
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.9
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.88
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	95.87
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.87
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.86
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.86
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.85
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.85
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.85
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.84
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.83
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.83
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.82
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.82
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.81
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.81
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.79
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.78
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.76
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.75
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.75
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	95.75
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.74
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.71
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.71
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.7
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.7
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.7
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.7
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.69
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.66
2xxa_A	433	Signal recognition particle protein; protein trans	95.62
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.62
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.6
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.6
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.59
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.59
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.57
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.56
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.55
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.55
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.55
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.54
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.54
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.53
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.52
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.51
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.51
2fna_A	357	Conserved hypothetical protein; structural genomic	95.51
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.48
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.46
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.46
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.45
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.43
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.42
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.41
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.4
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.38
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.37
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.36
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.35
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.35
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.32
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.25
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.25
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.24
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.24
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.23
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.2
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.19
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.19
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.18
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.13
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.12
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.1
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.09
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.09
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.09
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.08
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.05
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.02
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	94.99
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.97
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.93
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.91
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.9
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.88
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.87
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	94.87
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.81
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.76
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.75
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.74
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.68
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.65
3io5_A	333	Recombination and repair protein; storage dimer, i	94.6
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.6
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.59
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.58
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.57
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.55
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.55
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.53
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.47
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.47
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	94.45

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=6.3e-44  Score=302.17  Aligned_cols=199  Identities=39%  Similarity=0.670  Sum_probs=185.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|||||||+|+|+.|+++||++|||++|++|+.+..++++|..++.++.+|.++|++++..++.+++...     
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~-----   75 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH-----   75 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSS-----
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccC-----
Confidence            689999999999999999999999999999999999999999999999999999999999999999999887653     


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+|||||||++..|++.|+..     ..++.||+|++|.+++++|+.+|++|+.||+.||..                 +
T Consensus        76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~-----------------~  138 (206)
T 3sr0_A           76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVK-----------------Y  138 (206)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT-----------------T
T ss_pred             CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeee-----------------c
Confidence            689999999999999998754     258999999999999999999999999999999995                 4


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                      +|| .|+.+|.+|.||+++.+++|++.|++++.|+.+||++.+.++.||+++++++|+++|.++|.+
T Consensus       139 ~pp-~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          139 NPP-PPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             BCC-CTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             cCC-CCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            444 488999999999999999999999999999999999999999999999999999999999974

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=2.1e-42  Score=295.56  Aligned_cols=205  Identities=31%  Similarity=0.594  Sum_probs=174.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ..|++.|+|+|||||||+|+.|+++||+++|++++++|+.+..++++|+.+++++.+|..+|++++..++.+++...++.
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~   86 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA   86 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999887664


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                        .||||||||++..|++.|+... .+|.||+|++|++++++|+.+|++|+.||+.||+.                 |+|
T Consensus        87 --~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~-----------------~~p  147 (230)
T 3gmt_A           87 --NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVK-----------------FNP  147 (230)
T ss_dssp             --TCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETT-----------------TBC
T ss_pred             --CCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCccccc-----------------CCC
Confidence              6999999999999999998754 58999999999999999999999999999999995                 455


Q ss_pred             Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhc-----------CcEEEEeCCCCcccHHHHHHHHh
Q 023080          212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNR-----------GKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~-----------~~~~~id~~~~~eev~~~I~~~l  274 (287)
                      |+      .|+++|++|.||+++.+++|++.|++++.|+.+||.+.           +.++.||+++++++|+++|.++|
T Consensus       148 p~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l  227 (230)
T 3gmt_A          148 PKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQ  227 (230)
T ss_dssp             CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------------
T ss_pred             CCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHH
Confidence            53      57899999999999999999999999999999999973           78999999999999999999988


Q ss_pred             cc
Q 023080          275 NL  276 (287)
Q Consensus       275 ~~  276 (287)
                      ..
T Consensus       228 ~~  229 (230)
T 3gmt_A          228 VS  229 (230)
T ss_dssp             --
T ss_pred             hc
Confidence            64

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=9.3e-39  Score=271.95  Aligned_cols=187  Identities=29%  Similarity=0.511  Sum_probs=169.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ..++.+|+|+|||||||||+|+.|+++||++||+++|++|+.+..++++|..+++++.+|..+|++++..++.+++....
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~  105 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV  105 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999997754


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      +. ..||||||||++..|++.|+.. ..++.+|+|++|.+++++|+.+|+.+                            
T Consensus       106 ~~-~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~----------------------------  156 (217)
T 3umf_A          106 DK-NCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAET----------------------------  156 (217)
T ss_dssp             TT-CSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-------------------------------
T ss_pred             cc-ccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccccc----------------------------
Confidence            44 5799999999999999999875 46899999999999999999998632                            


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                .+|.||+++.+++|++.|+++..|+.+||.+.+.++.||+++++++||++|.++|+.
T Consensus       157 ----------~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          157 ----------SNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             ----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                      367899999999999999999999999999999999999999999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=100.00  E-value=7e-37  Score=265.58  Aligned_cols=210  Identities=33%  Similarity=0.589  Sum_probs=189.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      +.+|++|+|+|+|||||||+|++|++++|++++++++++++.+..++..+..+.+++.+|..++++.+..++...+....
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~  105 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ  105 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence            34788999999999999999999999999999999999999988899999999999999999999999999998887755


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCcc
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSIS  205 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~  205 (287)
                      +  +.+||+||||++..|+..+...     ..||.+|+|++|++++++|+.+|+.|+.||+.||..             +
T Consensus       106 ~--~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~-------------~  170 (243)
T 3tlx_A          106 C--KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKI-------------F  170 (243)
T ss_dssp             G--SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-------------T
T ss_pred             c--cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccc-------------c
Confidence            4  3799999999999999887764     358999999999999999999999999999999995             3


Q ss_pred             CCCCCCC--cccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          206 MAPLLPP--AHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       206 ~~~~~~p--~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                      +||-.+.  ..|+.+|++|.+|+++.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|.
T Consensus       171 ~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          171 NPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence            3322221  357889999999999999999999999999999999999999999999999999999998875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=100.00  E-value=2e-35  Score=251.25  Aligned_cols=203  Identities=38%  Similarity=0.718  Sum_probs=185.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.+..+.+++..|..++++.+..++...+.....  +
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~   78 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC--E   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc--c
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988877544  3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+||+||||.+..++..+....     .+|.+|+|++|++++++|+.+|+.|+.||+.||..                 +
T Consensus        79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~-----------------~  141 (216)
T 3dl0_A           79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLV-----------------F  141 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETT-----------------T
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccc-----------------c
Confidence            7999999999999988877643     38999999999999999999999999999999995                 3


Q ss_pred             CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                      .||+      .|+.+|.+|.+++.+.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|..
T Consensus       142 ~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          142 NPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             BCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             CCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            4442      577899999999999999999999999999999999988899999999999999999999874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=100.00  E-value=6.7e-35  Score=247.89  Aligned_cols=203  Identities=34%  Similarity=0.663  Sum_probs=185.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.+..+.+++..|..++++++..++...+.....  +
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~   78 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC--Q   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC--C
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988877544  3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+||+||+|.+..++..+....     .+|.+|+|++|++++++|+.+|+.||.||+.||+.                 +
T Consensus        79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~-----------------~  141 (216)
T 3fb4_A           79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTI-----------------F  141 (216)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETT-----------------T
T ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccc-----------------c
Confidence            7999999999999988877643     38999999999999999999999999999999995                 3


Q ss_pred             CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                      +||+      .|+.++..|.+++.+.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|..
T Consensus       142 ~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          142 NPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             BCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             CCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence            4442      577899999999999999999999999999999999988899999999999999999998863

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.3e-34  Score=242.67  Aligned_cols=203  Identities=30%  Similarity=0.558  Sum_probs=179.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ++++|+|+|+|||||||+|+.|++++|++++++|+++++....+++.+..+.+++.+|..++++.+..++..++....+ 
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~-   82 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC-   82 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-
Confidence            5678999999999999999999999999999999999998888889999999999999999999999999888876433 


Q ss_pred             CCccEEEeCCCCCHHHHHHHHH----h-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080          133 GESGFILDGFPRTVKQAEILEE----V-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~----~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                       +.+||+||||++..|++.+..    . ..||.+|||++|++++++|+..|+.++.||+.||+.                
T Consensus        83 -~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~----------------  145 (217)
T 3be4_A           83 -VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVK----------------  145 (217)
T ss_dssp             -TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT----------------
T ss_pred             -CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccc----------------
Confidence             478999999999888877763    2 258999999999999999999999999999999995                


Q ss_pred             CCCCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          208 PLLPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       208 ~~~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                       +.||+      .|..+|..+.+|..+.+++|+..|++...++.++|.+.+.++.||+++++++|+++|.+.|
T Consensus       146 -~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          146 -YNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             -TBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             -cCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence             34443      3567899999999999999999999999999999988778999999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=100.00  E-value=6.2e-33  Score=236.74  Aligned_cols=207  Identities=32%  Similarity=0.636  Sum_probs=179.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .++++|+|+|+|||||||+|+.|++++|++++++|+++++....+++.+..+.+++..|..++++.+..++..++.....
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence            35689999999999999999999999999999999999998888889999999999999999999999999888863222


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM  206 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~  206 (287)
                      . +.+||+||||++..++..+...     ..||++|+|+++++++++|+.+|+.++.||..||+.               
T Consensus        82 ~-~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~---------------  145 (220)
T 1aky_A           82 C-KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKI---------------  145 (220)
T ss_dssp             G-GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT---------------
T ss_pred             c-CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccc---------------
Confidence            2 4689999999999887766543     358999999999999999999999999999999984               


Q ss_pred             CCCCCCcc-----c-ccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          207 APLLPPAH-----C-MSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       207 ~~~~~p~~-----~-~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                        +.||..     | ..+|..|.+++.+.+++|++.|.+...++.++|.+.+.++.||+++++++|+++|.+.|..
T Consensus       146 --~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  219 (220)
T 1aky_A          146 --FNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK  219 (220)
T ss_dssp             --TBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             --cCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence              344432     2 3578888889999999999999999999999998777899999999999999999998853

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=100.00  E-value=6.7e-33  Score=238.78  Aligned_cols=208  Identities=36%  Similarity=0.638  Sum_probs=181.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      .+.++++|+|+|+|||||||+|+.|+++|++.++++|+++++.+..++..+..+++++..|..++++.+..++..++...
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~   91 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP   91 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            34467899999999999999999999999999999999999988888889999999999999999999999998888765


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCc
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSI  204 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~  204 (287)
                      ..  +.+||+||||++..|++.+..+     ..++++|+|+++++++++|+..|+.++.||+.||..             
T Consensus        92 ~~--~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~-------------  156 (233)
T 1ak2_A           92 PC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEE-------------  156 (233)
T ss_dssp             GG--TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTT-------------
T ss_pred             cc--cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccc-------------
Confidence            43  3689999999999888766543     248999999999999999999999999999999984             


Q ss_pred             cCCCCCCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          205 SMAPLLPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       205 ~~~~~~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                          |.||.      .|+.+|..|.++..+.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|.+.|..
T Consensus       157 ----~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~  230 (233)
T 1ak2_A          157 ----FNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK  230 (233)
T ss_dssp             ----TBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             ----cCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                33332      235678888889999999999999999999999998877789999999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=100.00  E-value=1.1e-32  Score=234.25  Aligned_cols=201  Identities=33%  Similarity=0.638  Sum_probs=179.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.+..+.+++..|..++++.+..++...+....+  .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~--~   78 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC--R   78 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG--G
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc--C
Confidence            46999999999999999999999999999999999998888889999999999999999999999999888876543  2


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc
Q 023080          135 SGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA  213 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~  213 (287)
                      .+||+||||++..++..|... ..||++|+|+++++++++|+.+|+.++.||..||+.                 +.||.
T Consensus        79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~-----------------~~pp~  141 (214)
T 1e4v_A           79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVK-----------------FNPPK  141 (214)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-----------------TBCCS
T ss_pred             CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCccccc-----------------CCCCC
Confidence            689999999999888877664 358999999999999999999999999999999984                 33442


Q ss_pred             ------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhc-----CcEEEEeCCCCcccHHHHHHHHh
Q 023080          214 ------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNR-----GKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       214 ------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~-----~~~~~id~~~~~eev~~~I~~~l  274 (287)
                            .|+.+|..|.+++.+.+++|++.|.+...++.++|.+.     +.++.||+++++++|+++|.+.|
T Consensus       142 ~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             STTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence                  36789999999999999999999999999999999865     57899999999999999999877

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=100.00  E-value=2.3e-32  Score=234.08  Aligned_cols=200  Identities=30%  Similarity=0.517  Sum_probs=176.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|+|||||||+++.|++++|++++++|+++++.+..++..+..+++++.+|..++++.+..++...+....   +
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~---g   77 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG---K   77 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC---T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc---C
Confidence            5799999999999999999999999999999999999777778899999999999999999999999988887632   3


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCcccc-CCCccccccccccCCCCCCCccCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQ-CGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~-~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                      .+||+||||++..++..+...     ..||++|+|++|++++++|+.+|+.++. ||..||+.                 
T Consensus        78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~-----------------  140 (223)
T 2xb4_A           78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIF-----------------  140 (223)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTT-----------------
T ss_pred             CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccc-----------------
Confidence            689999999998888887653     2589999999999999999999988877 99999985                 


Q ss_pred             CCCCc-------ccccccccCCCCcHH-HHHHHHHHHHhhchHHHH---HHHh-----cCcEEEEeCCCCcccHHHHHHH
Q 023080          209 LLPPA-------HCMSKLITRADDTEE-VVKERLRVYNEKSQPVEE---FYRN-----RGKLLEFDLPGGIPESWPKLLE  272 (287)
Q Consensus       209 ~~~p~-------~~~~~L~~r~~d~~~-~i~~rl~~y~~~~~~~~~---~y~~-----~~~~~~id~~~~~eev~~~I~~  272 (287)
                      ++||+       .|+.+|.+|.+|+.+ .+++|+..|++...|+.+   +|.+     .+.++.||+++++++|+++|.+
T Consensus       141 ~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~  220 (223)
T 2xb4_A          141 IDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLA  220 (223)
T ss_dssp             CGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHH
T ss_pred             cCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHH
Confidence            33432       356799999988888 999999999999999999   9987     5678999999999999999998


Q ss_pred             Hh
Q 023080          273 AL  274 (287)
Q Consensus       273 ~l  274 (287)
                      .|
T Consensus       221 ~l  222 (223)
T 2xb4_A          221 QL  222 (223)
T ss_dssp             HH
T ss_pred             Hh
Confidence            77

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=100.00  E-value=2.1e-31  Score=228.33  Aligned_cols=206  Identities=32%  Similarity=0.588  Sum_probs=180.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .++++|+|+|+|||||||+++.|++++|+.++++|++++.....++..+..+.+++..|..++++....++.+++...  
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--   82 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--   82 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence            356889999999999999999999999999999999999988888889999999999999999988888887777653  


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                      . +.+||+||+|.+..|...+.....++.+|+|+++++++++|+..|+.++.||+.||..                 +.|
T Consensus        83 ~-~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~-----------------~~p  144 (227)
T 1zd8_A           83 T-QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIE-----------------FNP  144 (227)
T ss_dssp             T-TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETT-----------------TBC
T ss_pred             c-CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccc-----------------cCC
Confidence            2 4689999999998888878777779999999999999999999998888899999874                 334


Q ss_pred             Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                      |.      .|..+|.+|.++..+.+++|+..|.+...++.++|.+.+.++.||++ ++++++++|.++|....
T Consensus       145 p~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~  216 (227)
T 1zd8_A          145 PKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV  216 (227)
T ss_dssp             CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred             CCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence            42      35678888888899999999999999999999999877889999999 99999999999997643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.97  E-value=6.3e-31  Score=224.56  Aligned_cols=206  Identities=31%  Similarity=0.521  Sum_probs=177.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .++++|+|+|+|||||||+++.|++++++.++++|++++.....++..|..+.+++.+|..++++.+..++..++....+
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            36678999999999999999999999999999999999998888888999999999999999999888888777665332


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL  210 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~  210 (287)
                      . ..+||+||||++..++..+...+ .|+++|||+++++++++|+..|..++.||+.||..                 +.
T Consensus        83 ~-~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~-----------------~~  144 (222)
T 1zak_A           83 Q-ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLK-----------------YS  144 (222)
T ss_dssp             H-HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESS-----------------SS
T ss_pred             c-CCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccc-----------------cC
Confidence            2 35899999999998888777643 58999999999999999999999999999999984                 44


Q ss_pred             CCc--ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          211 PPA--HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       211 ~p~--~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                      ||.  ....+|..+.++..+.+++|++.|+....++.++|..  .++.||+++++++++++|.+.|...
T Consensus       145 pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~  211 (222)
T 1zak_A          145 PPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI  211 (222)
T ss_dssp             CCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence            553  3446888888888999999999999988888888854  4788999999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.95  E-value=1.2e-26  Score=193.46  Aligned_cols=185  Identities=31%  Similarity=0.563  Sum_probs=156.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .++++|+|+|+|||||||+|+.|++++|++++++|++++.....++..+..+.+++..|..++.+....++...+.....
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence            36678999999999999999999999999999999999998877888899999999889999998888888777665433


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL  210 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~  210 (287)
                      . +.++|+||+|.+..+.+.+... ..++.+|||++|++++.+|+..|....                            
T Consensus        87 ~-~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~----------------------------  137 (196)
T 2c95_A           87 T-SKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETS----------------------------  137 (196)
T ss_dssp             T-CSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSS----------------------------
T ss_pred             c-CCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcC----------------------------
Confidence            3 5789999999998888776653 468999999999999999998774211                            


Q ss_pred             CCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          211 PPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       211 ~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                .+.++..+.+.+|+..|.....++.++|...+.++.||+++++++++++|.+.+.
T Consensus       138 ----------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~  192 (196)
T 2c95_A          138 ----------GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD  192 (196)
T ss_dssp             ----------SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             ----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHH
Confidence                      1234567888899999999999988889877778889999999999999998885

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.95  E-value=8.6e-27  Score=195.81  Aligned_cols=181  Identities=39%  Similarity=0.743  Sum_probs=153.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      ..+.+|++|+|+|+|||||||+|+.|++++|++++++|+++++.+..++..+..+.+++..|..++++....++.+++..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~   94 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNN   94 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Confidence            34457789999999999999999999999999999999999998888888899999999999999999888888777665


Q ss_pred             cccCCCccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCC
Q 023080          129 GQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPS  203 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~  203 (287)
                      ...  +.+||+||+|.+..+.+.+....     .|+.+|+|++|++++++|+.+|.                        
T Consensus        95 ~~~--~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~------------------------  148 (201)
T 2cdn_A           95 PDA--ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG------------------------  148 (201)
T ss_dssp             GGG--TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC------------------------
T ss_pred             ccC--CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC------------------------
Confidence            332  46899999999988877665432     38899999999999999998862                        


Q ss_pred             ccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          204 ISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       204 ~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                        +.+++.+.+++|++.|.....++.++|  ...++.||+++++++++++|.+.|.
T Consensus       149 ------------------r~~~~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          149 ------------------RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             ------------------CTTCSHHHHHHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             ------------------CCCCCHHHHHHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence                              234567889999999999888888888  3457889999999999999998875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.95  E-value=2e-26  Score=193.66  Aligned_cols=187  Identities=28%  Similarity=0.526  Sum_probs=155.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH-cCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-SSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~-~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      +.++++|+|+|+|||||||+++.|++++|++++++|++++.... .++..+..+..++.+|...+++....++.+.+...
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            34678999999999999999999999999999999999998654 56778888999998899888888877777666543


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                      ...+..+||+||+|++..++..++... .+|++|||++|++++++|+.+|....                          
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~--------------------------  145 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS--------------------------  145 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH--------------------------
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccC--------------------------
Confidence            222135899999999999888777643 58999999999999999998874210                          


Q ss_pred             CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                  .+.+++.+.+++|+..|.+...++.++|...+.++.||+++++++++++|.+.|.
T Consensus       146 ------------~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~  200 (203)
T 1ukz_A          146 ------------GRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR  200 (203)
T ss_dssp             ------------CCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ------------CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence                        2335678889999999999999999989877888889999999999999998875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.95  E-value=2.3e-26  Score=192.12  Aligned_cols=185  Identities=31%  Similarity=0.546  Sum_probs=154.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ++++|+|+|+|||||||+|+.|++++|+.++++|++++.....+++.+..+.+++..|..++++.+..++...+......
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            45689999999999999999999999999999999999887777888999999999999999988888887766554322


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                       +.+||+||+|.+..++..+.... .|+++|||++|++++.+|+.+|....                             
T Consensus        91 -~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-----------------------------  140 (199)
T 2bwj_A           91 -TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS-----------------------------  140 (199)
T ss_dssp             -CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC-----------------------------
T ss_pred             -CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC-----------------------------
Confidence             57899999999988877776533 68999999999999999999875210                             


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                               .+.+++.+.+.+|+..|.....++.++|...+.++.||+++++++++++|.+.+..
T Consensus       141 ---------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~  196 (199)
T 2bwj_A          141 ---------LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS  196 (199)
T ss_dssp             ---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             ---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                     12234567888899999998888888898777778899999999999999988753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.95  E-value=9.1e-26  Score=187.31  Aligned_cols=183  Identities=25%  Similarity=0.437  Sum_probs=156.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      .+++|+|+|+|||||||+++.|++++|++++++|++++.....++..+..+.+++..|...+++....++...+...  .
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--~   82 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--Q   82 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS--T
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc--C
Confidence            45789999999999999999999999999999999999887778889999999999999998888888888777654  2


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHh-c---CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEV-M---DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~-~---~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                       +.++|+||+|.+..+...+... .   .++++|+|++|++++++|+.+|...                           
T Consensus        83 -~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~---------------------------  134 (194)
T 1qf9_A           83 -GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGES---------------------------  134 (194)
T ss_dssp             -TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTT---------------------------
T ss_pred             -CCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcccc---------------------------
Confidence             5789999999998887776543 2   4889999999999999999887421                           


Q ss_pred             CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                 ..+.++..+.+.+|++.|.+...++.++|...+.++.||+++++++++++|.+.+..
T Consensus       135 -----------~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          135 -----------SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             -----------SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             -----------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                       124466788899999999988889888998777778899999999999999998863

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.94  E-value=4.3e-26  Score=188.79  Aligned_cols=179  Identities=39%  Similarity=0.643  Sum_probs=149.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .++++|+|+|+|||||||+++.|++++|++++++|++++..+..+++.+..+.+++.+|...+++.....+...+.    
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----   77 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----   77 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence            3567899999999999999999999999999999999998877788889999999999999998887777665442    


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM  206 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~  206 (287)
                         .++|+||++.+..+...+....     .|+.+|+|++|++++++|+.+|...                         
T Consensus        78 ---~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~-------------------------  129 (186)
T 3cm0_A           78 ---ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL-------------------------  129 (186)
T ss_dssp             ---SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH-------------------------
T ss_pred             ---CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc-------------------------
Confidence               2599999999988776554321     3789999999999999999877310                         


Q ss_pred             CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                   ..+.+++.+.+++|+..|.....++.++|...+.++.||+++++++++++|.+.+.
T Consensus       130 -------------~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          130 -------------EGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             -------------HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             -------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence                         02345678889999999998888888899877778899999999999999998774

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.94  E-value=1.5e-25  Score=186.39  Aligned_cols=186  Identities=25%  Similarity=0.549  Sum_probs=151.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH-cCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc-
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-SSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ-  130 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~-~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~-  130 (287)
                      +|++|+|+|+|||||||+|+.|++++|++++++|++++.... ..+..+..+.+++..|...+++....++...+.... 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            467899999999999999999999999999999999988764 355678888888888988888877777665544321 


Q ss_pred             -cCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCcc
Q 023080          131 -AGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSIS  205 (287)
Q Consensus       131 -~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~  205 (287)
                       ...+.+||+||+|.+..+...+...    ..++++|||++|++++++|+.+|...                        
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------------  137 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKS------------------------  137 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHT------------------------
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHccccc------------------------
Confidence             1114689999999998877655442    24789999999999999999877411                        


Q ss_pred             CCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          206 MAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       206 ~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                    ..|.+++.+.++++++.|.+...++.++|.+.+.++.||+++++++++++|.+.|..
T Consensus       138 --------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          138 --------------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             --------------SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             --------------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                          134566788899999999999999999998877888999999999999999998853

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.92  E-value=1.4e-23  Score=181.87  Aligned_cols=206  Identities=31%  Similarity=0.569  Sum_probs=167.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .+|.+|+|+|++||||||+++.|+++||+.+++.+++++.........+..+..++.++...++..+...+...+...  
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--  102 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--  102 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Confidence            356799999999999999999999999999999999998766555567777888888888888888777777666543  


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                      . +.+|++||+|.+..+++.+.....++++|+|+++++++++|+..|..+..+|+.+...                 +.+
T Consensus       103 ~-~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~-----------------~~~  164 (246)
T 2bbw_A          103 R-GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLD-----------------FNP  164 (246)
T ss_dssp             T-TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-----------------TSC
T ss_pred             C-CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccc-----------------cCC
Confidence            1 3589999999887766666655668999999999999999999998887777654331                 122


Q ss_pred             Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                      |+      .|.+++..+.++..+.+.+++..|.+...++.++|.+.+.++.||++++ ++++++|.++|....
T Consensus       165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~  236 (246)
T 2bbw_A          165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKI  236 (246)
T ss_dssp             CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTS
T ss_pred             CcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhC
Confidence            21      2447777777778899999999999998999999998888999999988 999999999997643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.81  E-value=2.2e-18  Score=139.97  Aligned_cols=170  Identities=17%  Similarity=0.194  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCC----chHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSG----SLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~----~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ++|+|+|+|||||||+++.| +.+|+.+++++++++......+    ........+...   .+...+...+...+... 
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTS-   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSC-
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhc-
Confidence            58999999999999999999 9999999999999998765432    223333333332   11233444555555321 


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                       . +..+|+||+ .+..+...+.... .++.+|||++|++++.+|+..|...                            
T Consensus        77 -~-~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~----------------------------  125 (179)
T 3lw7_A           77 -N-HDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS----------------------------  125 (179)
T ss_dssp             -C-CSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC------------------------------
T ss_pred             -C-CCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC----------------------------
Confidence             1 478999999 8888888887754 5789999999999999999988411                            


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                  ....+.+.+.+|+.....  .+...++...+  +.||++++++++.++|.+.+..
T Consensus       126 ------------~~~~~~~~~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~  176 (179)
T 3lw7_A          126 ------------DDSKEISELIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDR  176 (179)
T ss_dssp             --------------CCCHHHHHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred             ------------CCcchHHHHHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence                        012345666666543222  12333333333  4577788999999999988863

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.75  E-value=5.4e-17  Score=134.38  Aligned_cols=161  Identities=21%  Similarity=0.295  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHH-----------H
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF-----------N  120 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~-----------~  120 (287)
                      ++|+|+|+|||||||+++.|++++   |++++++++      ...+..+..+.+++..|...+.....           .
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   999999853      23344566777777777555442221           1


Q ss_pred             HHHHHHHhcccCCCccEEEe----------CCCCCHH--HHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccC
Q 023080          121 LLSKRLEAGQAGGESGFILD----------GFPRTVK--QAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQC  184 (287)
Q Consensus       121 ~l~~~l~~~~~~~~~g~Ild----------g~p~~~~--~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~  184 (287)
                      .+...+..     +..+|+|          |++....  +...+...    ..||++|||++|++++++|+.+|.     
T Consensus        75 ~i~~~l~~-----~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-----  144 (195)
T 2pbr_A           75 KIIPDLKR-----DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN-----  144 (195)
T ss_dssp             THHHHHHT-----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT-----
T ss_pred             HHHHHHhC-----CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC-----
Confidence            11122222     3567777          6655432  33333221    258999999999999999998642     


Q ss_pred             CCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcc
Q 023080          185 GGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIP  264 (287)
Q Consensus       185 g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~e  264 (287)
                                                           +.+ ..+..+.....|.+..    .+|   +.++.||++++++
T Consensus       145 -------------------------------------~~~-~~~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~  179 (195)
T 2pbr_A          145 -------------------------------------RFE-NKEFLEKVRKGFLELA----KEE---ENVVVIDASGEEE  179 (195)
T ss_dssp             -------------------------------------CCC-CHHHHHHHHHHHHHHH----HHS---TTEEEEETTSCHH
T ss_pred             -------------------------------------ccc-hHHHHHHHHHHHHHHH----hhC---CCEEEEECCCCHH
Confidence                                                 112 3343333334454322    223   3578899999999


Q ss_pred             cHHHHHHHHhcc
Q 023080          265 ESWPKLLEALNL  276 (287)
Q Consensus       265 ev~~~I~~~l~~  276 (287)
                      +++++|.+.+..
T Consensus       180 ~~~~~i~~~l~~  191 (195)
T 2pbr_A          180 EVFKEILRALSG  191 (195)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999988864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.9e-17  Score=137.48  Aligned_cols=167  Identities=19%  Similarity=0.253  Sum_probs=105.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhccc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      ++.+|+|+|+|||||||+++.|++.+|++++++|+++....  +..    +.+++.. |..........++.. +.   .
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~----i~~~~~~~~~~~~~~~e~~~l~~-l~---~   93 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKT----VGELFTERGEAGFRELERNMLHE-VA---E   93 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSC----HHHHHHHHHHHHHHHHHHHHHHH-HT---T
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCc----HHHHHHhcChHHHHHHHHHHHHH-Hh---h
Confidence            45689999999999999999999999999999999887632  122    2233321 111111112222222 11   1


Q ss_pred             CCCccEEEe---CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHh-CCCccccCCCccccccccccCCCCCCCccCC
Q 023080          132 GGESGFILD---GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCL-GRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       132 ~~~~g~Ild---g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~-~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                        ...+|++   |.+........+..   ++.+|||++|.+++++|+. .|+..|                         
T Consensus        94 --~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp-------------------------  143 (199)
T 3vaa_A           94 --FENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVLFRRLRIAKQQRP-------------------------  143 (199)
T ss_dssp             --CSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHHHHHHHHTGGGCG-------------------------
T ss_pred             --cCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHHHHHHhcCCCCCC-------------------------
Confidence              2567787   45555555555543   6789999999999999998 543222                         


Q ss_pred             CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC-CcccHHHHHHHHhccc
Q 023080          208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWPKLLEALNLD  277 (287)
Q Consensus       208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~-~~eev~~~I~~~l~~~  277 (287)
                                   ...+++.+.+.+++..+.....+   +|.. .. +.||+++ ++++++++|.+.|...
T Consensus       144 -------------~~~~~~~~~~~~~i~~~~~~r~~---~y~~-ad-~~Idt~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          144 -------------ILQGKEDDELMDFIIQALEKRAP---FYTQ-AQ-YIFNADELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             -------------GGTTCCHHHHHHHHHHHHHHHHH---HHTT-SS-EEEECCCCSSHHHHHHHHHHHHHH
T ss_pred             -------------CcCCCChhhHHHHHHHHHHHHHH---HHhh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence                         01133445555555555444333   5655 33 4577765 9999999999888643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.74  E-value=4.1e-17  Score=139.81  Aligned_cols=177  Identities=16%  Similarity=0.138  Sum_probs=113.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHH-HHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN-LLSKRLE  127 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~-~l~~~l~  127 (287)
                      ..++++|+|+|+|||||||+++.|++.++  ..++.+.      ....++.+..+++++..+....+....- ....+..
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~   96 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE   96 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            34778999999999999999999999996  4555441      2345677888999888776544433222 2223332


Q ss_pred             hc------ccCCCccEEEe----------CCCCCHHHH--HHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080          128 AG------QAGGESGFILD----------GFPRTVKQA--EILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCG  185 (287)
Q Consensus       128 ~~------~~~~~~g~Ild----------g~p~~~~~~--~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g  185 (287)
                      ..      ....+..+|+|          |++++..+.  ..+..+    ..||++|||++|++++++|+.+|....   
T Consensus        97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~---  173 (229)
T 4eaq_A           97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ---  173 (229)
T ss_dssp             HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCc---
Confidence            21      01114678999          888765443  233332    369999999999999999999874210   


Q ss_pred             CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHH-HHhhchHHHHHHHhcCcEEEEeCCCCcc
Q 023080          186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV-YNEKSQPVEEFYRNRGKLLEFDLPGGIP  264 (287)
Q Consensus       186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~-y~~~~~~~~~~y~~~~~~~~id~~~~~e  264 (287)
                                                         .+.++....+.+|+.. |.+..    +.|  ...++.||++++++
T Consensus       174 -----------------------------------dr~e~~~~~~~~rv~~~y~~l~----~~~--~~~~~vIDa~~s~e  212 (229)
T 4eaq_A          174 -----------------------------------NRLDQEDLKFHEKVIEGYQEII----HNE--SQRFKSVNADQPLE  212 (229)
T ss_dssp             ------------------------------------CCCHHHHHHHHHHHHHHHHHT----TTC--TTTEEEEETTSCHH
T ss_pred             -----------------------------------cchhhhhHHHHHHHHHHHHHHH----HhC--CCCEEEEeCCCCHH
Confidence                                               1223233444455544 33321    122  24688999999999


Q ss_pred             cHHHHHHHHhccc
Q 023080          265 ESWPKLLEALNLD  277 (287)
Q Consensus       265 ev~~~I~~~l~~~  277 (287)
                      +++++|.+.|...
T Consensus       213 ev~~~I~~~l~~~  225 (229)
T 4eaq_A          213 NVVEDTYQTIIKY  225 (229)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.73  E-value=1.3e-16  Score=131.48  Aligned_cols=170  Identities=15%  Similarity=0.166  Sum_probs=98.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      +..|+|+|+|||||||+++.|++++|++++++|++++....  ..    +.+++.. |..........++......    
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----   74 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--AD----IAWIFEMEGEAGFRRREREMIEALCKL----   74 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SC----HHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CC----hhhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence            55799999999999999999999999999999998776321  12    2222221 1111122222333332222    


Q ss_pred             CCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH--hCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          133 GESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC--LGRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       133 ~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl--~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                       ...+|..|  .+........+...   .++|||++|.+++.+|+  ..+..                            
T Consensus        75 -~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l~~Rl~~~~~~~----------------------------  122 (185)
T 3trf_A           75 -DNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQLKRIGQKGEMR----------------------------  122 (185)
T ss_dssp             -SSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHHHHHHHCCTTCS----------------------------
T ss_pred             -CCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHHHHHHhhcCCCC----------------------------
Confidence             13444444  44555555555443   38999999999999999  44321                            


Q ss_pred             CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC-CcccHHHHHHHHhccchhhhh
Q 023080          209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWPKLLEALNLDEYEEK  282 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~-~~eev~~~I~~~l~~~~~~~~  282 (287)
                                   |+.........+++.......   .+|..... +.||+++ ++++++++|.+.+.....+.|
T Consensus       123 -------------rp~~~~~~~~~~l~~~~~~r~---~~y~~~ad-~~Idt~~~~~~e~~~~I~~~l~~~~~~~~  180 (185)
T 3trf_A          123 -------------RPLFIKNNSKEKLQQLNEIRK---PLYQAMAD-LVYPTDDLNPRQLATQILVDIKQTYSDLE  180 (185)
T ss_dssp             -------------SCCCCCHHHHHHHHHHHHHHH---HHHHHHCS-EEEECTTCCHHHHHHHHHHHSCC------
T ss_pred             -------------CCCCCCCCHHHHHHHHHHHHH---HHHhhcCC-EEEECCCCCHHHHHHHHHHHHHHHhhhhh
Confidence                         112211222223333322222   34444233 4577765 899999999999987665444

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.71  E-value=3.4e-16  Score=129.27  Aligned_cols=169  Identities=15%  Similarity=0.222  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCC-chHHHHHHHHhcCCcccH--HHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSG-SLSQQLSEIVNQGKLVSD--EIIFNLLSKRL  126 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~-~~~~~i~~~l~~g~~~~~--~~~~~~l~~~l  126 (287)
                      ++|+|+|+|||||||+++.|+++++     +.+++.++++++.+.... ..+.   ..  .+...+.  ......+..++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DE--MRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HH--HTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hh--hhcCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999999998     889998898877553211 1110   00  0122222  22222222222


Q ss_pred             Hhcc--cCCCccEEEeCCCCCHHH--------HHHHHHhcCccEEEEEecCHHHHHHH-HhC--CCccccCCCccccccc
Q 023080          127 EAGQ--AGGESGFILDGFPRTVKQ--------AEILEEVMDIDLVVNLKLCEDVLLEK-CLG--RRMCSQCGGNFNVANI  193 (287)
Q Consensus       127 ~~~~--~~~~~g~Ildg~p~~~~~--------~~~l~~~~~~d~vi~L~~~~e~l~~R-l~~--R~~~~~~g~~y~~~~~  193 (287)
                      ....  .. +..+|+||++....+        ...+... .|+.+|||++|++++++| +..  |...            
T Consensus        77 ~~~l~~~~-~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~------------  142 (194)
T 1nks_A           77 AEEARAGG-EGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRN------------  142 (194)
T ss_dssp             HHHHHHTC-SSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCC------------
T ss_pred             HHHhhccC-CCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCC------------
Confidence            2211  12 468999987432222        2333333 489999999999998866 666  5310            


Q ss_pred             cccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHH--HHHHHHHhhchHHHHHHHhcCcEEEE-eCCCCcccHHHHH
Q 023080          194 NVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK--ERLRVYNEKSQPVEEFYRNRGKLLEF-DLPGGIPESWPKL  270 (287)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~--~rl~~y~~~~~~~~~~y~~~~~~~~i-d~~~~~eev~~~I  270 (287)
                                                   +....+.+.  .++...+   ......|. ...++.| |+++++++++++|
T Consensus       143 -----------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I  189 (194)
T 1nks_A          143 -----------------------------DYSDESVILETINFARYA---ATASAVLA-GSTVKVIVNVEGDPSIAANEI  189 (194)
T ss_dssp             -----------------------------CCCSHHHHHHHHHHHHHH---HHHHHHHH-TCEEEEEECCSSCHHHHHHHH
T ss_pred             -----------------------------CccCHHHHHHHHHHHHHH---HHHHHHhc-CCcEEEEeCCCCCHHHHHHHH
Confidence                                         111223222  2222221   22233332 2456788 9999999999999


Q ss_pred             HHHhc
Q 023080          271 LEALN  275 (287)
Q Consensus       271 ~~~l~  275 (287)
                      .+.|.
T Consensus       190 ~~~l~  194 (194)
T 1nks_A          190 IRSMK  194 (194)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            88763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.71  E-value=9.7e-17  Score=132.48  Aligned_cols=117  Identities=20%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCccc--HHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS--DEIIFNLLSKRL  126 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~--~~~~~~~l~~~l  126 (287)
                      +++|+|+|+|||||||+++.|+++++     +++++++++++......+... ...+.   .....  ...+...+...+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~i   78 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQM---RKMDPETQKRIQKMAGRKI   78 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHHH---hcCCHHHHHHHHHHHHHHH
Confidence            56899999999999999999999998     999999999987654322100 00000   01100  111222222223


Q ss_pred             HhcccCCCccEEEeCCCCCHHHH--------HHHHHhcCccEEEEEecCHHHHHH-HHhC
Q 023080          127 EAGQAGGESGFILDGFPRTVKQA--------EILEEVMDIDLVVNLKLCEDVLLE-KCLG  177 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~p~~~~~~--------~~l~~~~~~d~vi~L~~~~e~l~~-Rl~~  177 (287)
                      .... . +..+|+||++....+.        ..+... .|+++|||++|++++++ |+..
T Consensus        79 ~~~~-~-~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~  135 (192)
T 1kht_A           79 AEMA-K-ESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSD  135 (192)
T ss_dssp             HHHH-T-TSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTS
T ss_pred             Hhhc-c-CCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhh
Confidence            2211 1 3579999975421110        122222 47899999999999996 9977

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.70  E-value=3.4e-16  Score=130.96  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=107.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHH---HHHHHHHHHhc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEII---FNLLSKRLEAG  129 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~---~~~l~~~l~~~  129 (287)
                      .+++|+|+|++||||||+++.|++.+|+.+++.|++.....          ...+..|....+...   ...+...+   
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~---   83 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL---   83 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence            46789999999999999999999999999999987742210          111122333332222   22222222   


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                       .. +.++|+|+..........+.... .++.+|+|++|.+++++|+.+|..+                           
T Consensus        84 -~~-~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~---------------------------  134 (202)
T 3t61_A           84 -AS-REPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH---------------------------  134 (202)
T ss_dssp             -TS-SSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS---------------------------
T ss_pred             -hc-CCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc---------------------------
Confidence             11 46899998877777777776654 3578999999999999999987421                           


Q ss_pred             CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                                     ....+.++.+++.+.    +.   +. ....+.||+++++++++++|.+.|....
T Consensus       135 ---------------~~~~~~~~~~~~~~~----~~---~~-~~~~~~Id~~~~~~e~~~~I~~~l~~~~  181 (202)
T 3t61_A          135 ---------------FMPSSLLQTQLETLE----DP---RG-EVRTVAVDVAQPLAEIVREALAGLARLA  181 (202)
T ss_dssp             ---------------CCCHHHHHHHHHHCC----CC---TT-STTEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCHHHHHHHHHhcC----CC---CC-CCCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence                           112444444333332    11   11 2235789999999999999999887543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.70  E-value=1.2e-17  Score=140.53  Aligned_cols=173  Identities=12%  Similarity=0.101  Sum_probs=109.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHH-------
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSK-------  124 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~-------  124 (287)
                      .++++|+|+|+|||||||+++.|+++++..++++ +++++. ..++..+..+.+++..+..+++.....++..       
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN   85 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999998877777 333321 1234566777777776666665443322221       


Q ss_pred             HHHhcccCCCccEEEeCCCCCH--HH-------HHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080          125 RLEAGQAGGESGFILDGFPRTV--KQ-------AEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA  191 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~~--~~-------~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~  191 (287)
                      .+...... +..+|+|+++.+.  .+       ...+..    ...||++|||++|++++++|+.+|.            
T Consensus        86 ~i~~~l~~-~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~------------  152 (212)
T 2wwf_A           86 EIKSLLLK-GIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE------------  152 (212)
T ss_dssp             HHHHHHHH-TCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS------------
T ss_pred             HHHHHHhC-CCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc------------
Confidence            11111011 3579999987531  11       112221    1358999999999999999986542            


Q ss_pred             cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080          192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL  271 (287)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~  271 (287)
                                                   .+.+ . +.+..++...+.....       ...++.||+++++++++++|.
T Consensus       153 -----------------------------~r~~-~-~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~  194 (212)
T 2wwf_A          153 -----------------------------EIYE-K-VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIV  194 (212)
T ss_dssp             -----------------------------STTC-S-HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHH
T ss_pred             -----------------------------cccc-H-HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHH
Confidence                                         1112 2 3444555433222211       234788999999999999999


Q ss_pred             HHhccc
Q 023080          272 EALNLD  277 (287)
Q Consensus       272 ~~l~~~  277 (287)
                      +.+...
T Consensus       195 ~~l~~~  200 (212)
T 2wwf_A          195 KEVTKI  200 (212)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            998754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.69  E-value=8.8e-16  Score=129.28  Aligned_cols=174  Identities=17%  Similarity=0.173  Sum_probs=105.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH-HHHHh--
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS-KRLEA--  128 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~-~~l~~--  128 (287)
                      +.+|+|.|++||||||+++.|+++|  |..++.+    +  .+.+++.+..+++++.++...+.....-++. .+..+  
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~----~--eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~   75 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT----R--EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   75 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE----E--SSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe----e--CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999998  5555543    1  1346678888888888776665544322221 11111  


Q ss_pred             ----cccCCCccEEEeCC----------CC--CHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          129 ----GQAGGESGFILDGF----------PR--TVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       129 ----~~~~~~~g~Ildg~----------p~--~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                          +....+..+|+|.|          .+  ..++...+...    ..||++|||++|++++++|+.+|+...      
T Consensus        76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~------  149 (205)
T 4hlc_A           76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ------  149 (205)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-----------
T ss_pred             HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc------
Confidence                01111356777743          22  23344444432    359999999999999999998875221      


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW  267 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~  267 (287)
                                                      .|-+. ..+..++-.+.|.+.    ..  .....++.||+++++++|+
T Consensus       150 --------------------------------dr~e~~~~~f~~~v~~~Y~~l----~~--~~~~~~~~IDa~~~~e~V~  191 (205)
T 4hlc_A          150 --------------------------------NRLDQEDLKFHEKVIEGYQEI----IH--NESQRFKSVNADQPLENVV  191 (205)
T ss_dssp             ----------------------------------CCHHHHHHHHHHHHHHHHH----HH--SCCTTEEEEETTSCHHHHH
T ss_pred             --------------------------------cchhccCHHHHHHHHHHHHHH----HH--hCCCCEEEEECCCCHHHHH
Confidence                                            01111 122222222333321    11  1234689999999999999


Q ss_pred             HHHHHHhccc
Q 023080          268 PKLLEALNLD  277 (287)
Q Consensus       268 ~~I~~~l~~~  277 (287)
                      ++|.+.|...
T Consensus       192 ~~i~~~i~~~  201 (205)
T 4hlc_A          192 EDTYQTIIKY  201 (205)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887643

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.69  E-value=2e-16  Score=130.35  Aligned_cols=165  Identities=22%  Similarity=0.276  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      ++|+|+|+|||||||+|+.|++++|+++++.|++++...  +..    +.+++. .|.....+.....+...+...    
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~----   72 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALADH----   72 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHHC----
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhcC----
Confidence            469999999999999999999999999999999887643  111    223332 232222333333343333221    


Q ss_pred             CccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          134 ESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       134 ~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                       ..+|.+|  +.........+.    .+.+|||++|.+++++|+.+|...+                             
T Consensus        73 -~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~~~Rl~~r~~r~-----------------------------  118 (184)
T 2iyv_A           73 -DGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEGVRRTGGNTVRP-----------------------------  118 (184)
T ss_dssp             -CSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHHHHHTTCCCCCS-----------------------------
T ss_pred             -CeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHHHHHHhCCCCCC-----------------------------
Confidence             2333334  222222222221    5689999999999999998874211                             


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccchh
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLDEY  279 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~~~  279 (287)
                             +.. .++..+    +++.+.....   .+|..... +.||++ .++++++++|.+.+.....
T Consensus       119 -------~~~-~~~~~~----~i~~~~~~r~---~~~~~~~~-~~Idt~~~s~ee~~~~I~~~l~~~~~  171 (184)
T 2iyv_A          119 -------LLA-GPDRAE----KYRALMAKRA---PLYRRVAT-MRVDTNRRNPGAVVRHILSRLQVPSP  171 (184)
T ss_dssp             -------STT-SCCHHH----HHHHHHHHHH---HHHHHHCS-EEEECSSSCHHHHHHHHHTTSCCCCT
T ss_pred             -------Ccc-CCCHHH----HHHHHHHHHH---HHHhccCC-EEEECCCCCHHHHHHHHHHHHhhcCc
Confidence                   000 112222    2333322222   34443333 568887 7999999999999876543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.69  E-value=2.8e-16  Score=127.33  Aligned_cols=110  Identities=20%  Similarity=0.371  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      |+|+|+|+|||||||+++.|++++|++++++|++.+...      +..+.+++.. |......+...++ ..+..     
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~~-----   68 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLSE-----   68 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHTT-----
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHhc-----
Confidence            579999999999999999999999999999999887643      2223333332 2111111111222 22221     


Q ss_pred             CccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          134 ESGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       134 ~~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ...+|++ |  .+........+.   .++.+|||++|++++++|+..|.
T Consensus        69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~  114 (168)
T 2pt5_A           69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSK  114 (168)
T ss_dssp             SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTT
T ss_pred             cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCC
Confidence            2456665 4  233333333333   37899999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.67  E-value=5.8e-15  Score=124.97  Aligned_cols=174  Identities=16%  Similarity=0.152  Sum_probs=111.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCC--cccHHHH-HHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGK--LVSDEII-FNLLSKRL  126 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~--~~~~~~~-~~~l~~~l  126 (287)
                      ++++|+|.|++||||||+++.|+++++   +.++.+    ++  +.++++|+.+++++..+.  .+..... .-....+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~   78 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA   78 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999999984   455544    22  356778889999988764  2333222 11112222


Q ss_pred             Hhc------ccCCCccEEEeCC------------CCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccC
Q 023080          127 EAG------QAGGESGFILDGF------------PRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQC  184 (287)
Q Consensus       127 ~~~------~~~~~~g~Ildg~------------p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~  184 (287)
                      .+.      ....+..+|+|-|            ....++...+..+    ..||++|||++|++++++|+.+|...   
T Consensus        79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~---  155 (213)
T 4edh_A           79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL---  155 (213)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC---
T ss_pred             HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence            210      0111456788832            1233445555442    46999999999999999999988410   


Q ss_pred             CCccccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCc
Q 023080          185 GGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGI  263 (287)
Q Consensus       185 g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~  263 (287)
                                                          .+.+. ..+.+++..+.|...    .+.|  ...++.||+++++
T Consensus       156 ------------------------------------dr~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~  193 (213)
T 4edh_A          156 ------------------------------------DRFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPL  193 (213)
T ss_dssp             ------------------------------------CTTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCH
T ss_pred             ------------------------------------CcccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCH
Confidence                                                01111 345555444455442    2223  3468999999999


Q ss_pred             ccHHHHHHHHhccc
Q 023080          264 PESWPKLLEALNLD  277 (287)
Q Consensus       264 eev~~~I~~~l~~~  277 (287)
                      ++++++|.+.|...
T Consensus       194 eeV~~~I~~~l~~~  207 (213)
T 4edh_A          194 AEVQAGLDRLLPNL  207 (213)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.67  E-value=4.7e-16  Score=132.84  Aligned_cols=173  Identities=19%  Similarity=0.184  Sum_probs=108.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL-------GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSK  124 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-------g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~  124 (287)
                      .++++|+|.|++||||||+++.|++++       |..++.+    ++  +.+++.|+.+++++..+...+.....-....
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~   96 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG   96 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            467899999999999999999999998       4444432    22  3566788899999888765444433222223


Q ss_pred             HHHhc------ccCCCccEEEeCCC------------CCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080          125 RLEAG------QAGGESGFILDGFP------------RTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       125 ~l~~~------~~~~~~g~Ildg~p------------~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                      +....      ....+..+|+|.|.            ...++...+...    ..||++|||++|++++++|+.+|... 
T Consensus        97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~-  175 (227)
T 3v9p_A           97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP-  175 (227)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC-
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc-
Confidence            32211      01114568888432            223444444432    35999999999999999999887410 


Q ss_pred             cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC
Q 023080          183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG  261 (287)
Q Consensus       183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~  261 (287)
                                                            .+.+. ..+.+++..+.|...    .+.|  ...++.||+++
T Consensus       176 --------------------------------------dr~E~~~~ef~~rv~~~Y~~l----a~~~--~~~~~vIDa~~  211 (227)
T 3v9p_A          176 --------------------------------------DKFESESDAFFARTRAEYLRR----AQEA--PHRFVIVDSSE  211 (227)
T ss_dssp             -----------------------------------------CCHHHHHHHHHHHHHHHH----HHHC--TTTEEEEETTS
T ss_pred             --------------------------------------cchhhhhHHHHHHHHHHHHHH----HHHh--cCCEEEEeCCC
Confidence                                                  11122 234444444445432    2222  34689999999


Q ss_pred             CcccHHHHHHHHhc
Q 023080          262 GIPESWPKLLEALN  275 (287)
Q Consensus       262 ~~eev~~~I~~~l~  275 (287)
                      ++++|+++|.+.|.
T Consensus       212 s~eeV~~~I~~~l~  225 (227)
T 3v9p_A          212 PIAQIRKQLEGVLA  225 (227)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.67  E-value=1.8e-15  Score=123.63  Aligned_cols=161  Identities=14%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH-HhCCCeeehhHHHHHHHHcCCc-----hHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK-FLGVPHIATGDLVREELASSGS-----LSQQLSEIVNQGKLVSDEIIFNLLSKRLE  127 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~-~lg~~~i~~d~llr~~~~~~~~-----~~~~i~~~l~~g~~~~~~~~~~~l~~~l~  127 (287)
                      |.+|+|+|+|||||||+++.|++ .+|+.++++| .++..+...+.     +...-..       ...+.....+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCccchhhhchhhhh-------HHHHHHHHHHHHHHh
Confidence            46899999999999999999999 6899999985 55554433211     1111001       112223344444442


Q ss_pred             hcccCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCC
Q 023080          128 AGQAGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPS  203 (287)
Q Consensus       128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~  203 (287)
                      .. .. +.++|+|+++.+..+...+...    +.+..+|||++|.+++++|+..|..+                      
T Consensus        74 ~~-~~-g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~----------------------  129 (181)
T 1ly1_A           74 GG-DS-VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK----------------------  129 (181)
T ss_dssp             SC-SS-CCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG----------------------
T ss_pred             hc-cC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC----------------------
Confidence            11 11 5789999999887766655532    23557999999999999999987521                      


Q ss_pred             ccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          204 ISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       204 ~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                          ....+.++++++.|....     .+   .. +.+|...+ +++...|...|..
T Consensus       130 --------------------~~~~~~i~~~~~~~~~~~-----~~---~~-~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          130 --------------------AVPIDVLRSMYKSMREYL-----GL---PV-YNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             --------------------CCCHHHHHHHHHHHHHHH-----TC---CC-C---------------------
T ss_pred             --------------------CCCHHHHHHHHHHhhccC-----CC---Cc-cccCCCCC-ceeeehhhhhhhc
Confidence                                335678888888886641     11   11 23776653 7788888777654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.67  E-value=4.4e-16  Score=126.45  Aligned_cols=105  Identities=18%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      .+|+|+|+|||||||+++.|++++|++++++|+++++..      +..+.+++.. |.....+....++......     
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~-----   76 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKTL-----   76 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc-----
Confidence            478999999999999999999999999999999887743      1223344432 3222222222333332211     


Q ss_pred             CccE-EEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          134 ESGF-ILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       134 ~~g~-Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                       ..+ |++ |  ++.. ..      +..++.+|||++|++++++|+..|
T Consensus        77 -~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r  117 (168)
T 1zuh_A           77 -KTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQK  117 (168)
T ss_dssp             -SSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC-
T ss_pred             -CCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhcc
Confidence             234 444 3  3333 21      234789999999999999999887

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.66  E-value=1.1e-15  Score=124.27  Aligned_cols=161  Identities=14%  Similarity=0.134  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      ++|+|+|+|||||||+++.|++++|+++++.|++++..  .+....    +++. .|..........++. .+.    . 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~----~~~~~~~~~~~~~~~~~~~~-~l~----~-   70 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVA----DVVAAEGWPGFRRRESEALQ-AVA----T-   70 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHH----HHHHHHHHHHHHHHHHHHHH-HHC----C-
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHH----HHHHHcCHHHHHHHHHHHHH-Hhh----c-
Confidence            47999999999999999999999999999999888764  222222    2221 111111111111111 121    1 


Q ss_pred             CccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHh--CCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          134 ESGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCL--GRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       134 ~~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~--~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                       ..+|++ |  .+........+..   ++.+|||++|++++++|+.  .|..+                           
T Consensus        71 -~~~vi~~g~~~~~~~~~~~~l~~---~~~~i~l~~~~e~~~~R~~~~~r~~~---------------------------  119 (173)
T 1e6c_A           71 -PNRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEELALRLQASLQAHQ---------------------------  119 (173)
T ss_dssp             -SSEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHHHHHHHHHHCSCC---------------------------
T ss_pred             -CCeEEECCCcEEeCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhccCCCC---------------------------
Confidence             355665 4  3333333443432   6799999999999999998  76211                           


Q ss_pred             CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhcc
Q 023080          209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNL  276 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~  276 (287)
                                   ++....+...+++..+.....   .+|....  +.||++ .+++++.++|.+.+..
T Consensus       120 -------------r~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~Id~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          120 -------------RPTLTGRPIAEEMEAVLRERE---ALYQDVA--HYVVDATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             -------------CCCTTHHHHHHHHHHHHHHHH---HHHHHHC--SEEEETTSCHHHHHHHHHHHTTC
T ss_pred             -------------CCcCCCCCHHHHHHHHHHHHH---HHHHhCc--EEEECCCCCHHHHHHHHHHHhcc
Confidence                         111222334445555544333   2344422  457877 7999999999998863

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.66  E-value=9.1e-16  Score=128.14  Aligned_cols=167  Identities=14%  Similarity=0.053  Sum_probs=103.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH--HH----
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS--KR----  125 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~--~~----  125 (287)
                      ++++|+|+|+|||||||+++.|++++ |+++++++...     ..+..++.+.+++..+..+..... .++.  .+    
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~   76 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA   76 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence            57899999999999999999999999 68888764221     123466778888876544443322 1111  11    


Q ss_pred             --HHhcccCCCccEEEeCCCCCH-----------HHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080          126 --LEAGQAGGESGFILDGFPRTV-----------KQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA  191 (287)
Q Consensus       126 --l~~~~~~~~~g~Ildg~p~~~-----------~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~  191 (287)
                        +...... +..+|+|+|+.+.           .....+.. ...||++|||++|++++++   +|..+          
T Consensus        77 ~~i~~~l~~-~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d----------  142 (204)
T 2v54_A           77 SFIQEQLEQ-GITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE----------  142 (204)
T ss_dssp             HHHHHHHHT-TCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS----------
T ss_pred             HHHHHHHHC-CCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc----------
Confidence              1111011 3578999887532           22222222 1358999999999998877   34211          


Q ss_pred             cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHH-HHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHH
Q 023080          192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV-YNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL  270 (287)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~-y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I  270 (287)
                                                    +.+ . ..+.+|+.. |.+...    .+  ...++.||+++++++++++|
T Consensus       143 ------------------------------~~e-~-~~~~~rl~~~y~~~~~----~~--~~~~~~Id~~~~~~~v~~~i  184 (204)
T 2v54_A          143 ------------------------------IYE-D-VTFQQKVLQEYKKMIE----EG--DIHWQIISSEFEEDVKKELI  184 (204)
T ss_dssp             ------------------------------TTC-C-SHHHHHHHHHHHHHHT----TC--SSCEEEECTTSCHHHHHHHH
T ss_pred             ------------------------------ccc-H-HHHHHHHHHHHHHHHH----hC--CCcEEEEECCCCHHHHHHHH
Confidence                                          001 1 234445544 433211    11  23578999999999999999


Q ss_pred             HHHhccc
Q 023080          271 LEALNLD  277 (287)
Q Consensus       271 ~~~l~~~  277 (287)
                      .+.+...
T Consensus       185 ~~~l~~~  191 (204)
T 2v54_A          185 KNIVIEA  191 (204)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.66  E-value=2.4e-15  Score=127.32  Aligned_cols=169  Identities=15%  Similarity=0.143  Sum_probs=100.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccHHH----------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVSDEI----------  117 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~~~----------  117 (287)
                      ++++|+|+|++||||||+++.|++ +|++++++|++.+.....++.....+.+.+...     ..+....          
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            568999999999999999999998 999999999998875444443334444433211     1122211          


Q ss_pred             --------HHHHHHHHHHh-cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          118 --------IFNLLSKRLEA-GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       118 --------~~~~l~~~l~~-~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                              +...+...+.. .....+..+|+|+ |...+..  +  ...+|.+|||++|++++++|+..|.         
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~--~~~~d~vi~l~~~~e~~~~Rl~~R~---------  147 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--L--YKKANRVLVVDVSPETQLKRTMQRD---------  147 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--G--GGGCSEEEEEECCHHHHHHHHHHHH---------
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--c--cccCCEEEEEECCHHHHHHHHHHcC---------
Confidence                    11111111111 0110122344444 4432221  1  1247899999999999999998762         


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP  268 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~  268 (287)
                                                         ..+.+.+..++...    .+..+++...+  +.||++++++++.+
T Consensus       148 -----------------------------------~~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~  186 (218)
T 1vht_A          148 -----------------------------------DVTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIAS  186 (218)
T ss_dssp             -----------------------------------TCCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHH
T ss_pred             -----------------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHH
Confidence                                               11234455554432    12223333333  46888889999999


Q ss_pred             HHHHHhccc
Q 023080          269 KLLEALNLD  277 (287)
Q Consensus       269 ~I~~~l~~~  277 (287)
                      +|.+.+...
T Consensus       187 ~I~~~l~~~  195 (218)
T 1vht_A          187 DVARLHAHY  195 (218)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888643

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.65  E-value=1.7e-15  Score=130.14  Aligned_cols=178  Identities=18%  Similarity=0.137  Sum_probs=103.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC---CcccHHHHH-HHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG---KLVSDEIIF-NLLSKRLE  127 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g---~~~~~~~~~-~~l~~~l~  127 (287)
                      .++++|+|.|++||||||+++.|+++++..++++..++++  +.++++|+.+++++..+   ..+...... -....+..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~  102 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ  102 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence            3678999999999999999999999985443331122333  35678889999988632   223332221 11111111


Q ss_pred             hc------ccCCCccEEEeC----------CCC--CHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080          128 AG------QAGGESGFILDG----------FPR--TVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCG  185 (287)
Q Consensus       128 ~~------~~~~~~g~Ildg----------~p~--~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g  185 (287)
                      ..      ....+..+|+|-          +.+  ..++...+..+    ..||++|||++|++++++|+.+|...    
T Consensus       103 ~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~----  178 (236)
T 3lv8_A          103 LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL----  178 (236)
T ss_dssp             HHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC----
T ss_pred             HHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc----
Confidence            10      011145778883          222  23344444432    36999999999999999999887410    


Q ss_pred             CccccccccccCCCCCCCccCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcc
Q 023080          186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD-DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIP  264 (287)
Q Consensus       186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~-d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~e  264 (287)
                                                         .+.+ +..+..++..+.|.+.       ......++.||++++++
T Consensus       179 -----------------------------------dr~E~~~~~~~~rv~~~y~~l-------a~~~~~~~vIDa~~sie  216 (236)
T 3lv8_A          179 -----------------------------------DRIEKMDISFFERARERYLEL-------ANSDDSVVMIDAAQSIE  216 (236)
T ss_dssp             -----------------------------------CTTTTSCHHHHHHHHHHHHHH-------HHHCTTEEEEETTSCHH
T ss_pred             -----------------------------------chhhhhHHHHHHHHHHHHHHH-------HHHCCCEEEEeCCCCHH
Confidence                                               0111 1234444333444332       22222389999999999


Q ss_pred             cHHHHHHHHhccc
Q 023080          265 ESWPKLLEALNLD  277 (287)
Q Consensus       265 ev~~~I~~~l~~~  277 (287)
                      +++++|.+.|...
T Consensus       217 eV~~~I~~~l~~~  229 (236)
T 3lv8_A          217 QVTADIRRALQDW  229 (236)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.65  E-value=9.6e-16  Score=126.79  Aligned_cols=120  Identities=18%  Similarity=0.237  Sum_probs=73.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .++++|+|+|+|||||||+++.|++++|+++++.|.+...........+......+..   .-.+.+...+...+..   
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~---   76 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQS---   76 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHHT---
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHhC---
Confidence            4678999999999999999999999999999999776544222111101100000000   0001111222222322   


Q ss_pred             CCCccEEEeCCCCCHHHHHH---HHHh-cCccEEEEEecCHHHHHHHHhCCC
Q 023080          132 GGESGFILDGFPRTVKQAEI---LEEV-MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~---l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                        +.++|+|+++....+...   +... ..++++|||++|++++++|+.+|.
T Consensus        77 --g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~  126 (193)
T 2rhm_A           77 --GQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI  126 (193)
T ss_dssp             --TCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             --CCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence              468999998733222222   2322 357899999999999999998774

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.65  E-value=4.1e-15  Score=124.67  Aligned_cols=165  Identities=16%  Similarity=0.190  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCc-----cc---------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL-----VS---------------  114 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-----~~---------------  114 (287)
                      ++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+.+.+.....     +.               
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            5789999999999999999988 99999999998876433332222222222221111     00               


Q ss_pred             ---HHHHHHHHHHHHHhc--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080          115 ---DEIIFNLLSKRLEAG--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN  189 (287)
Q Consensus       115 ---~~~~~~~l~~~l~~~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~  189 (287)
                         ..+....+...+...  ... +.++|+|+. ...+. . +  ...+|.+|||++|++++++|+..|.          
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~-~~~vv~~~~-~l~e~-~-~--~~~~d~vi~l~~~~e~~~~Rl~~R~----------  145 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQT-APYTLFVVP-LLIEN-K-L--TALCDRILVVDVSPQTQLARSAQRD----------  145 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCC-SSEEEEECT-TTTTT-T-C--GGGCSEEEEEECCHHHHHHHHC-------------
T ss_pred             HHHHhccCHHHHHHHHHHHHhcC-CCEEEEEec-hhhhc-C-c--HhhCCEEEEEECCHHHHHHHHHHcC----------
Confidence               111122222221111  111 347888873 22111 0 1  1236899999999999999998873          


Q ss_pred             cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcc----c
Q 023080          190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIP----E  265 (287)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~e----e  265 (287)
                                                        ..+.+.+.+|++..    .+..+.|...+  +.||++++++    +
T Consensus       146 ----------------------------------~~~~e~~~~r~~~q----~~~~~~~~~ad--~vIdn~~~~~~~~~~  185 (206)
T 1jjv_A          146 ----------------------------------NNNFEQIQRIMNSQ----VSQQERLKWAD--DVINNDAELAQNLPH  185 (206)
T ss_dssp             ------------------------------------CHHHHHHHHHHS----CCHHHHHHHCS--EEEECCSCHHHHHHH
T ss_pred             ----------------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCccccHHH
Confidence                                              12345566665541    23444555444  4688888999    9


Q ss_pred             HHHHHHHHhcc
Q 023080          266 SWPKLLEALNL  276 (287)
Q Consensus       266 v~~~I~~~l~~  276 (287)
                      +.++|.+.+..
T Consensus       186 ~~~~i~~~~~~  196 (206)
T 1jjv_A          186 LQQKVLELHQF  196 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.65  E-value=2.1e-15  Score=127.62  Aligned_cols=171  Identities=16%  Similarity=0.176  Sum_probs=108.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee-ehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccHHHHH-------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI-ATGDLVREELASSGSLSQQLSEIVNQG-----KLVSDEIIF-------  119 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i-~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~~~~~-------  119 (287)
                      ++++|+|.|++||||||+++.|++++....+ ++ .+.++  +.++++|+.+++++...     ..+.+....       
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R   78 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR   78 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH
Confidence            4679999999999999999999998832222 11 11222  35678899999988732     233332211       


Q ss_pred             -----HHHHHHHHhcccCCCccEEEeCC------------CCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCC
Q 023080          120 -----NLLSKRLEAGQAGGESGFILDGF------------PRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       120 -----~~l~~~l~~~~~~~~~g~Ildg~------------p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                           ..+...+..     +..+|+|-|            ....++...+...    ..||++|||++|++++++|+.+|
T Consensus        79 ~~~~~~~i~paL~~-----g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R  153 (213)
T 4tmk_A           79 VQLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR  153 (213)
T ss_dssp             HHHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC-----CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence                 112222222     456788832            1224444444442    36999999999999999999887


Q ss_pred             CccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEE
Q 023080          179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD-DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEF  257 (287)
Q Consensus       179 ~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~-d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~i  257 (287)
                      ...                                       .+.+ ...+..++..+.|....    +   ....++.|
T Consensus       154 ~~~---------------------------------------dr~E~~~~~f~~rv~~~y~~la----~---~~~~~~vI  187 (213)
T 4tmk_A          154 GEL---------------------------------------DRIEQESFDFFNRTRARYLELA----A---QDKSIHTI  187 (213)
T ss_dssp             SSC---------------------------------------CTTTTSCHHHHHHHHHHHHHHH----H---TCTTEEEE
T ss_pred             CCc---------------------------------------cchhhhHHHHHHHHHHHHHHHH----H---HCCcEEEE
Confidence            410                                       0111 23455554444554422    1   12568999


Q ss_pred             eCCCCcccHHHHHHHHhccc
Q 023080          258 DLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       258 d~~~~~eev~~~I~~~l~~~  277 (287)
                      |+++++++|+++|.+.|...
T Consensus       188 Da~~s~eeV~~~I~~~l~~~  207 (213)
T 4tmk_A          188 DATQPLEAVMDAIRTTVTHW  207 (213)
T ss_dssp             ETTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988754

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.64  E-value=7.8e-15  Score=122.73  Aligned_cols=168  Identities=15%  Similarity=0.184  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHH------H
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSK------R  125 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~------~  125 (287)
                      |+|+|.|+.||||||+++.|+++|   |..++.+.      .+.++..+..+.+++..+...+.....-....      .
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr------eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR------EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE------SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999988   66665441      13455667777777665544433322111111      1


Q ss_pred             HHhcccCCCccEEEeCCC------------CCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080          126 LEAGQAGGESGFILDGFP------------RTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN  189 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p------------~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~  189 (287)
                      +...-.. +..+|+|-|.            ...+....+...    ..||++|+|++|+++.++|...+.          
T Consensus        75 I~~~L~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----------  143 (197)
T 3hjn_A           75 IKQYLSE-GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----------  143 (197)
T ss_dssp             HHHHHTT-TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----------
T ss_pred             HHHHHHC-CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----------
Confidence            1111111 4567777432            223333333322    359999999999999999854431          


Q ss_pred             cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHH
Q 023080          190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPK  269 (287)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~  269 (287)
                                                      | -+..+..++-.+.|.+.    .+.  ....++.||+++++++|+++
T Consensus       144 --------------------------------r-~e~~ef~~rv~~~y~~l----a~~--~~~~~~~IDa~~~~eeV~~~  184 (197)
T 3hjn_A          144 --------------------------------R-FEKREFLERVREGYLVL----ARE--HPERIVVLDGKRSIEEIHRD  184 (197)
T ss_dssp             --------------------------------T-TCCHHHHHHHHHHHHHH----HHH--CTTTEEEEETTSCHHHHHHH
T ss_pred             --------------------------------c-cccHHHHHHHHHHHHHH----HHh--CCCCEEEEcCCCCHHHHHHH
Confidence                                            1 12234444333444332    221  23458899999999999999


Q ss_pred             HHHHhccch
Q 023080          270 LLEALNLDE  278 (287)
Q Consensus       270 I~~~l~~~~  278 (287)
                      |.+.|....
T Consensus       185 I~~~i~~rl  193 (197)
T 3hjn_A          185 VVREVKRRW  193 (197)
T ss_dssp             HHHHHSCC-
T ss_pred             HHHHHHHHh
Confidence            999998654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.64  E-value=7e-15  Score=119.18  Aligned_cols=150  Identities=20%  Similarity=0.145  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ++|+|+|+|||||||+++.|++++|+++++.|.+.....    .    +...+.            . ...+..     +
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~~~~------------~-~~~l~~-----~   55 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEKLFE------------H-FNKLAD-----E   55 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHHHHH------------H-HHHHTT-----C
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHHHHH------------H-HHHHHh-----C
Confidence            478999999999999999999999999999987765411    0    011111            0 011111     2


Q ss_pred             ccEEEeCC---------------CCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCC
Q 023080          135 SGFILDGF---------------PRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGG  198 (287)
Q Consensus       135 ~g~Ildg~---------------p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~  198 (287)
                      ..+|+|-+               .....+...+... ..|+.+|||++|++++.+|+.+|..                  
T Consensus        56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r------------------  117 (173)
T 3kb2_A           56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD------------------  117 (173)
T ss_dssp             CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC------------------
T ss_pred             CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC------------------
Confidence            34555521               1233344444433 3589999999999999999987631                  


Q ss_pred             CCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccc
Q 023080          199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLD  277 (287)
Q Consensus       199 ~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~  277 (287)
                                              .....+.+++..+.|.+    ....|.  ...+.||++ .++++++++|.+.++..
T Consensus       118 ------------------------~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~  167 (173)
T 3kb2_A          118 ------------------------EYIEGKDIDSILELYRE----VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELE  167 (173)
T ss_dssp             ------------------------SCCCHHHHHHHHHHHHH----HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred             ------------------------cchhhhHHHHHHHHHHH----HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence                                    11223344433344433    333343  346789988 49999999999998864


Q ss_pred             h
Q 023080          278 E  278 (287)
Q Consensus       278 ~  278 (287)
                      .
T Consensus       168 ~  168 (173)
T 3kb2_A          168 H  168 (173)
T ss_dssp             G
T ss_pred             C
Confidence            3

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.63  E-value=3.1e-15  Score=131.93  Aligned_cols=171  Identities=16%  Similarity=0.182  Sum_probs=104.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccHH--------
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVSDE--------  116 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~~--------  116 (287)
                      .+.++++|+|+|++||||||+|+.|+ .+|++++++|++.+.....+......+.+.+...     ..+...        
T Consensus        71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~  149 (281)
T 2f6r_A           71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG  149 (281)
T ss_dssp             SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence            34577899999999999999999999 6899999999998876554444433333332211     111111        


Q ss_pred             ----------HHHHHH----HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccc
Q 023080          117 ----------IIFNLL----SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       117 ----------~~~~~l----~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                                ++...+    ...+......+...+|+||.......   +.  ..+|.+|||++|++++++|+..|.   
T Consensus       150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~--~~~d~vI~l~a~~ev~~~Rl~~R~---  221 (281)
T 2f6r_A          150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---WQ--SMVHEVWTVVIPETEAVRRIVERD---  221 (281)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---GG--GGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred             CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---hH--HhCCEEEEEcCCHHHHHHHHHHcC---
Confidence                      111111    12221111111257999986432111   11  237899999999999999998773   


Q ss_pred             cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCC
Q 023080          183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGG  262 (287)
Q Consensus       183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~  262 (287)
                                                               ..+.+.+..|+...    .+..+++...+  +.||++++
T Consensus       222 -----------------------------------------g~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s  254 (281)
T 2f6r_A          222 -----------------------------------------GLSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWE  254 (281)
T ss_dssp             -----------------------------------------CCCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSC
T ss_pred             -----------------------------------------CCCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCC
Confidence                                                     11234555554443    22333443333  45788889


Q ss_pred             cccHHHHHHHHhcc
Q 023080          263 IPESWPKLLEALNL  276 (287)
Q Consensus       263 ~eev~~~I~~~l~~  276 (287)
                      ++++.++|.+.+..
T Consensus       255 ~eel~~~I~~~l~~  268 (281)
T 2f6r_A          255 SHVTQSQVEKAWNL  268 (281)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.62  E-value=1.6e-15  Score=124.02  Aligned_cols=158  Identities=18%  Similarity=0.164  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      .|+|+|+|||||||+++.|++++|+++++.|++++...  +    ..+.+++. .|.....+....++.. +..     .
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g----~~~~~~~~~~g~~~~~~~~~~~~~~-l~~-----~   73 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--N----QKVSEIFEQKRENFFREQEQKMADF-FSS-----C   73 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--T----SCHHHHHHHHCHHHHHHHHHHHHHH-HTT-----C
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--C----CCHHHHHHHcCHHHHHHHHHHHHHH-HHc-----c
Confidence            68999999999999999999999999999999887632  1    11222222 2222222222222222 221     2


Q ss_pred             ccEEEe-CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc
Q 023080          135 SGFILD-GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA  213 (287)
Q Consensus       135 ~g~Ild-g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~  213 (287)
                      ..+|++ |.+.... .. +   ...+.+|||++|++++.+|+..|...                                
T Consensus        74 ~~~vi~~g~~~~~~-~~-l---~~~~~~i~l~~~~e~~~~R~~~r~~~--------------------------------  116 (175)
T 1via_A           74 EKACIATGGGFVNV-SN-L---EKAGFCIYLKADFEYLKKRLDKDEIS--------------------------------  116 (175)
T ss_dssp             CSEEEECCTTGGGS-TT-G---GGGCEEEEEECCHHHHTTCCCGGGTT--------------------------------
T ss_pred             CCEEEECCCCEehh-hH-H---hcCCEEEEEeCCHHHHHHHHhcccCC--------------------------------
Confidence            356666 5432221 11 2   23568999999999999998766200                                


Q ss_pred             ccccccccCCCCc-HHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccc
Q 023080          214 HCMSKLITRADDT-EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLD  277 (287)
Q Consensus       214 ~~~~~L~~r~~d~-~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~  277 (287)
                             .|+... .+.++..+.       ....+|.... .+.||++ .++++++++|.+.+..-
T Consensus       117 -------~r~~~~~~~~i~~~~~-------~r~~~y~~~~-~~~Idt~~~~~eev~~~I~~~l~~~  167 (175)
T 1via_A          117 -------KRPLFYDEIKAKKLYN-------ERLSKYEQKA-NFILNIENKNIDELLSEIKKVIKEG  167 (175)
T ss_dssp             -------TSCTTCCHHHHHHHHH-------HHHHHHHHHC-SEEEECTTCCHHHHHHHHHHHHC--
T ss_pred             -------CCCCcccHHHHHHHHH-------HHHHHHHhcC-CEEEECCCCCHHHHHHHHHHHHHhc
Confidence                   111111 333332221       2234554422 3678887 79999999999998753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.62  E-value=1.8e-14  Score=120.37  Aligned_cols=164  Identities=15%  Similarity=0.142  Sum_probs=101.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHH---HHHHHHHHHhc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEII---FNLLSKRLEAG  129 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~---~~~l~~~l~~~  129 (287)
                      ++.+|+|+|++||||||+++.|+..+|..+++.+++.....         . .....|....+...   ...+...+...
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~   97 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLRSLAEWMDAR   97 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence            56789999999999999999999999999999877642210         0 00111222211111   11111111111


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      ... +..+|+|.........+.+.....+..+|||+++.+++++|+.+|...+                           
T Consensus        98 ~~~-g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~---------------------------  149 (200)
T 4eun_A           98 ADA-GVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF---------------------------  149 (200)
T ss_dssp             HHT-TCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS---------------------------
T ss_pred             Hhc-CCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC---------------------------
Confidence            111 3578888755555555556555445688999999999999998885221                           


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                     ...+.++..++.+.       .+|... ..+.||++++++++.++|.+.|...
T Consensus       150 ---------------~~~~~l~~~~~~~~-------~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          150 ---------------MPASLLQSQLATLE-------ALEPDE-SGIVLDLRQPPEQLIERALTWLDIA  194 (200)
T ss_dssp             ---------------SCGGGHHHHHHHCC-------CCCTTS-CEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred             ---------------CCHHHHHHHHHHhC-------CCCCCC-CeEEEECCCCHHHHHHHHHHHHHhc
Confidence                           11223333322221       123322 3578999999999999999999854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.62  E-value=4.7e-15  Score=122.42  Aligned_cols=110  Identities=19%  Similarity=0.381  Sum_probs=71.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH-hCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcc---cHHHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF-LGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLV---SDEIIFNLLSKRLEA  128 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~-lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~---~~~~~~~~l~~~l~~  128 (287)
                      +++.|+|+|+|||||||+++.|++. +|++++++|+++++.. -....+.    .+.. ..+   .++.....+...+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~-~~~~~~~----~~~~-~~~~r~~~~~~~~~l~~~~~~   82 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-FYTEYDT----ELDT-HIIEEKDEDRLLDFMEPIMVS   82 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-CSCC----------C-CCCCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh-hhhhHHH----Hhhh-cccCCCCHHHHHHHHHHHHhc
Confidence            5678999999999999999999999 7999999999988731 1111111    1111 122   233333334333321


Q ss_pred             cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          129 GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                           ..++|+|+.....     +.. ..++.+|||++|.+++++|+.+|+
T Consensus        83 -----~g~~vi~~~~~~~-----~~~-~~~~~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           83 -----RGNHVVDYHSSEL-----FPE-RWFHMVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             -----SSEEEEECSCCTT-----SCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             -----cCCEEEeCchHhh-----hhh-ccCCEEEEEECCHHHHHHHHHhCC
Confidence                 2478888653221     111 126799999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.62  E-value=5.5e-14  Score=114.64  Aligned_cols=159  Identities=14%  Similarity=0.130  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccH-------HHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD-------EIIFNLLSKR  125 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~-------~~~~~~l~~~  125 (287)
                      ++.+|+|+|++||||||+++.|+..+|..+++.|++.+..         .+... ..|..+.+       ..+...+...
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~   76 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEKM-ASGEPLNDDDRKPWLQALNDAAFAM   76 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHHH-HTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHHh-hcCcCCCccccccHHHHHHHHHHHH
Confidence            5678999999999999999999999999999998764220         00000 01111111       0111222222


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc-EEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCc
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMDID-LVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSI  204 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~  204 (287)
                      +..     +..+|+|.......+...+.... ++ .+|||++|++++++|+..|..+                       
T Consensus        77 ~~~-----~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~-----------------------  127 (175)
T 1knq_A           77 QRT-----NKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGH-----------------------  127 (175)
T ss_dssp             HHH-----CSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTC-----------------------
T ss_pred             Hhc-----CCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCC-----------------------
Confidence            222     35788884223334444454433 45 7999999999999999987421                       


Q ss_pred             cCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          205 SMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       205 ~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                         ....+.+..++..+    .+.  +|... ..+.||++++++++.++|.+.|..
T Consensus       128 -------------------~~~~~~~~~~~~~~----~~~--~~~~~-~~~~Id~~~~~~~~~~~i~~~l~~  173 (175)
T 1knq_A          128 -------------------FFKTQMLVTQFETL----QEP--GADET-DVLVVDIDQPLEGVVASTIEVIKK  173 (175)
T ss_dssp             -------------------CCCHHHHHHHHHHC----CCC--CTTCT-TEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             -------------------CCchHHHHHHHHhh----hCc--ccCCC-CeEEEeCCCCHHHHHHHHHHHHhc
Confidence                               11233444333222    111  13322 357889889999999999988753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.61  E-value=4.3e-15  Score=124.94  Aligned_cols=170  Identities=16%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH----------
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL----------  121 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~----------  121 (287)
                      .++++|+|+|+|||||||+++.|+++++..+++++. +++. ..++..+..+.+++..+..+++.....+          
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   84 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP   84 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999998765555422 1110 1124456667777766555554432211          


Q ss_pred             -HHHHHHhcccCCCccEEEeCCC-----C-------CHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080          122 -LSKRLEAGQAGGESGFILDGFP-----R-------TVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN  187 (287)
Q Consensus       122 -l~~~l~~~~~~~~~g~Ildg~p-----~-------~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~  187 (287)
                       +...+..     +..+|+|.+.     .       .......+.. ...||++|||++|++++++|+.+| .+      
T Consensus        85 ~i~~~l~~-----~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~------  152 (215)
T 1nn5_A           85 LIKEKLSQ-----GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HE------  152 (215)
T ss_dssp             HHHHHHHT-----TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------C------
T ss_pred             HHHHHHHC-----CCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cc------
Confidence             1222221     3578889432     1       1222221221 135899999999999999999633 11      


Q ss_pred             cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHhhchHHHHHHHhcCcEEEEeCCCCcccH
Q 023080          188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLR-VYNEKSQPVEEFYRNRGKLLEFDLPGGIPES  266 (287)
Q Consensus       188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~-~y~~~~~~~~~~y~~~~~~~~id~~~~~eev  266 (287)
                                                        +.+ .. .+.+++. .|.....    .+  ...++.||++++++++
T Consensus       153 ----------------------------------~~~-~~-~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~  190 (215)
T 1nn5_A          153 ----------------------------------RYE-NG-AFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAV  190 (215)
T ss_dssp             ----------------------------------TTC-SH-HHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHH
T ss_pred             ----------------------------------ccc-hH-HHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHH
Confidence                                              111 12 2233332 2322111    01  2357889999999999


Q ss_pred             HHHHHHHhccc
Q 023080          267 WPKLLEALNLD  277 (287)
Q Consensus       267 ~~~I~~~l~~~  277 (287)
                      +++|.+.+...
T Consensus       191 ~~~i~~~l~~~  201 (215)
T 1nn5_A          191 HEDIRVLSEDA  201 (215)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.60  E-value=6e-14  Score=117.48  Aligned_cols=173  Identities=15%  Similarity=0.129  Sum_probs=96.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcCC---cccHHHH---------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQGK---LVSDEII---------  118 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g~---~~~~~~~---------  118 (287)
                      ++++|+|+|+|||||||+++.|+++++..  ++.++.          +.+..+.+++..+.   .......         
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~   72 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW----------NSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS   72 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET----------TCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC----------CcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999874  444210          11222233332211   0111100         


Q ss_pred             ---HHHHHHHHHhcccCCCccEEEeCCCCCHH-----------HHHHHHH-hcCccEEEEEecCHHHHHHHHh-CCCccc
Q 023080          119 ---FNLLSKRLEAGQAGGESGFILDGFPRTVK-----------QAEILEE-VMDIDLVVNLKLCEDVLLEKCL-GRRMCS  182 (287)
Q Consensus       119 ---~~~l~~~l~~~~~~~~~g~Ildg~p~~~~-----------~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~-~R~~~~  182 (287)
                         ...+...+..     +..+|+|+++.+..           ....+.. ...++++|+|++|++++++|+. +|..  
T Consensus        73 ~~~~~~i~~~l~~-----g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~--  145 (213)
T 2plr_A           73 DRYERYILPMLKS-----GFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK--  145 (213)
T ss_dssp             HHHHHTHHHHHHT-----TCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHhC-----CCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc--
Confidence               0111112221     46799999876531           1222222 2248999999999999999998 6641  


Q ss_pred             cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCC--CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC
Q 023080          183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD--DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP  260 (287)
Q Consensus       183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~--d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~  260 (287)
                       +++ |.                         ++..+..+.+  +..+.+.+|+..++....   +.    ..++.||++
T Consensus       146 -~~~-~~-------------------------~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~---~~----~~~~~Id~~  191 (213)
T 2plr_A          146 -IKP-QE-------------------------AGADIFPGLSPEEGFLKYQGLITEVYDKLV---KD----ENFIVIDGT  191 (213)
T ss_dssp             -CCT-TT-------------------------TTTTTCTTSCHHHHHHHHHHHHHHHHHHHT---TT----TTCEEEETT
T ss_pred             -ccc-cc-------------------------cccccccccchhhhHHHHHHHHHHHHHHHH---hh----CCEEEEECC
Confidence             011 00                         0000111111  111334444444332211   11    146889999


Q ss_pred             CCcccHHHHHHHHhcc
Q 023080          261 GGIPESWPKLLEALNL  276 (287)
Q Consensus       261 ~~~eev~~~I~~~l~~  276 (287)
                      +++++++++|.+.|..
T Consensus       192 ~~~e~v~~~I~~~l~~  207 (213)
T 2plr_A          192 KTPKEIQIQIRKFVGE  207 (213)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.60  E-value=6.6e-15  Score=127.57  Aligned_cols=173  Identities=15%  Similarity=0.123  Sum_probs=106.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      +.+|+|+|++||||||+++.|++.+|+.++++|++++....     +..+.+++.. |.....+.....+.......   
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~---  119 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-----GTSVAEIFEHFGESVFREKETEALKKLSLMY---  119 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-----TSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-----CccHHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence            55799999999999999999999999999999998877431     2223444432 43333344444444444331   


Q ss_pred             CCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC--ccccCCCccccccccccCCCCCCCccCCC
Q 023080          133 GESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR--MCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       133 ~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                       ...+|.+|  .+........+.    .+++|||+++.+++.+|+.++.  ..|                          
T Consensus       120 -~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l~~Rl~~~~~~~Rp--------------------------  168 (250)
T 3nwj_A          120 -HQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTGSRP--------------------------  168 (250)
T ss_dssp             -SSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHHHHHHHC---------------------------------
T ss_pred             -CCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCCCC--------------------------
Confidence             13455554  555555555553    3789999999999999998632  111                          


Q ss_pred             CCCCccccccccc--CCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEE----------eC-CCCcccHHHHHHHHhc
Q 023080          209 LLPPAHCMSKLIT--RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEF----------DL-PGGIPESWPKLLEALN  275 (287)
Q Consensus       209 ~~~p~~~~~~L~~--r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~i----------d~-~~~~eev~~~I~~~l~  275 (287)
                                |..  +.++..+...+++........+   .|...+.++.+          |. ..+++++.++|.+.+.
T Consensus       169 ----------l~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~  235 (250)
T 3nwj_A          169 ----------LLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ  235 (250)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred             ----------cccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHH
Confidence                      111  1223333344455554444443   56665555433          43 4699999999999887


Q ss_pred             cch
Q 023080          276 LDE  278 (287)
Q Consensus       276 ~~~  278 (287)
                      ...
T Consensus       236 ~~~  238 (250)
T 3nwj_A          236 SYL  238 (250)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.59  E-value=1.9e-14  Score=121.16  Aligned_cols=168  Identities=14%  Similarity=0.041  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH--------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD--------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~--------------  115 (287)
                      .-|.|+|.+||||||+++.|++ +|+++|++|.+.++.+..++.....+.+.+..+.     .+..              
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            4689999999999999999998 9999999999999988777777677766654322     2222              


Q ss_pred             ----HHHHHHHHHHHHhcc-cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccc
Q 023080          116 ----EIIFNLLSKRLEAGQ-AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNV  190 (287)
Q Consensus       116 ----~~~~~~l~~~l~~~~-~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~  190 (287)
                          .+++..+...+.... ..+...+|+|. |.-.+.. .+..  .+|.+|++++|+++.++|+++|.           
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~~--~~D~vi~V~ap~e~r~~Rl~~Rd-----------  153 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWKA--RCDRVLVVDCPVDTQIARVMQRN-----------  153 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHHH--HCSEEEEEECCHHHHHHHHHHHH-----------
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Cccc--cCCeEEEEECCHHHHHHHHHhcC-----------
Confidence                234444444433211 11133567775 3322200 1111  27899999999999999999873           


Q ss_pred             ccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHH
Q 023080          191 ANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPK  269 (287)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~  269 (287)
                                                       ..+.+.+.+|++..    .+..+++...+  ++||++ ++++++..+
T Consensus       154 ---------------------------------g~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~q  194 (210)
T 4i1u_A          154 ---------------------------------GFTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQ  194 (210)
T ss_dssp             ---------------------------------CCCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHH
T ss_pred             ---------------------------------CCCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHH
Confidence                                             23456666666543    23344444444  357888 899999999


Q ss_pred             HHHHhccc
Q 023080          270 LLEALNLD  277 (287)
Q Consensus       270 I~~~l~~~  277 (287)
                      |.+.+...
T Consensus       195 V~~l~~~~  202 (210)
T 4i1u_A          195 VDALHQRY  202 (210)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.58  E-value=9.5e-14  Score=113.79  Aligned_cols=158  Identities=14%  Similarity=0.047  Sum_probs=90.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee-ehhHHHHHHHHcCCchHHHHHHHHhcCCcc----c--HHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI-ATGDLVREELASSGSLSQQLSEIVNQGKLV----S--DEIIFNLLSKR  125 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i-~~d~llr~~~~~~~~~~~~i~~~l~~g~~~----~--~~~~~~~l~~~  125 (287)
                      ++++|+|+|+|||||||+++.|++++|.+++ +.+.           .+..+.+++..|...    .  .+.+...+...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~   72 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA   72 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999988 4311           122233333221110    0  12234444444


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHH----HHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCC
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAE----ILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGN  201 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~----~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~  201 (287)
                      +...    +..+|+|+.........    .+...+.+-.+|||++|++++++|+..|..                     
T Consensus        73 l~~~----g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~---------------------  127 (183)
T 2vli_A           73 SREA----AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ---------------------  127 (183)
T ss_dssp             HHHC----SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-----------------------
T ss_pred             HHhC----CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccc---------------------
Confidence            4432    34678887655543222    232222233569999999999999998741                     


Q ss_pred             CCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccch
Q 023080          202 PSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLDE  278 (287)
Q Consensus       202 ~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~~  278 (287)
                                          ++ ...+.++.    +.+...+. . |   . + .||++ .++++++++|.+.+....
T Consensus       128 --------------------r~-~~~~~~~~----~~~~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          128 --------------------PQ-VNVGTVED----RLNELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             -----------------------CCHHHHHH----HHHHHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             --------------------cc-hhHHHHHH----HHHhhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence                                11 11233332    33322222 2 2   2 3 68887 799999999999997654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.58  E-value=1.4e-14  Score=126.16  Aligned_cols=161  Identities=22%  Similarity=0.260  Sum_probs=100.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH---hCCCee--ehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF---LGVPHI--ATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLE  127 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~---lg~~~i--~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~  127 (287)
                      ++++|+|+|+|||||||+++.|++.   +|+.++  +.|.+ +..+......+..          .........+...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~----------~~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEE----------FIKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHH----------HHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHH----------HHHHHHHHHHHHHhh
Confidence            5778999999999999999999998   788887  77554 3322111110110          011112223333332


Q ss_pred             hcccCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCC
Q 023080          128 AGQAGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPS  203 (287)
Q Consensus       128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~  203 (287)
                      .      ..+|+|+.+....+...+...    +.++++|||++|++++++|+.+|. .                      
T Consensus        72 ~------~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~-~----------------------  122 (260)
T 3a4m_A           72 N------YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG-E----------------------  122 (260)
T ss_dssp             T------SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT-C----------------------
T ss_pred             C------CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC-C----------------------
Confidence            1      479999977666655555432    457899999999999999998873 0                      


Q ss_pred             ccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC--CcccHHHHHHHHhccc
Q 023080          204 ISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG--GIPESWPKLLEALNLD  277 (287)
Q Consensus       204 ~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~--~~eev~~~I~~~l~~~  277 (287)
                                          ....+.++...+.|..   +. ..|......+.||+++  +++++++.|...+...
T Consensus       123 --------------------~~~~~~l~~~~~~~e~---~~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~  174 (260)
T 3a4m_A          123 --------------------KIPNEVIKKMYEKFDE---PG-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEI  174 (260)
T ss_dssp             --------------------SSCHHHHHHHHHHCCC---TT-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred             --------------------CCCHHHHHHHHHHhcC---cc-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence                                1123455544344322   11 1222123357789886  7899999999888754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.57  E-value=1e-14  Score=124.02  Aligned_cols=175  Identities=12%  Similarity=0.042  Sum_probs=95.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHH-HHHHHHHHhc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF-NLLSKRLEAG  129 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~-~~l~~~l~~~  129 (287)
                      .++++|+|.|++||||||+++.|+++++. ..+++-.+.++  +.+++.++.+++++............ -....+....
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999998765 22222000111  34567778888877643223332221 1111221111


Q ss_pred             ------ccCCCccEEEeCCC------------CCHHHHHHHHHhc---CccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          130 ------QAGGESGFILDGFP------------RTVKQAEILEEVM---DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       130 ------~~~~~~g~Ildg~p------------~~~~~~~~l~~~~---~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                            ....+..+|+|-|.            ...++...+....   .||++|||++|++++++|+ +|.         
T Consensus        97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd---------  166 (223)
T 3ld9_A           97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN---------  166 (223)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------------
T ss_pred             HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC---------
Confidence                  01113567778431            2344444554432   6999999999999999998 331         


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD-DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW  267 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~-d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~  267 (287)
                                                       |-+ ...+..++-.+.|.+.    .+.|  ...++.||++++++++ 
T Consensus       167 ---------------------------------r~E~~~~e~~~rv~~~y~~l----a~~~--~~~~~vIDa~~sieeV-  206 (223)
T 3ld9_A          167 ---------------------------------GYEFADMEFYYRVRDGFYDI----AKKN--PHRCHVITDKSETYDI-  206 (223)
T ss_dssp             --------------------------------------CHHHHHHHHHHHHHH----HHHC--TTTEEEEESSCSSSCC-
T ss_pred             ---------------------------------ccccchHHHHHHHHHHHHHH----HHHC--CCCEEEEcCCCCHHHH-
Confidence                                             111 1234444333344332    2223  2468999999999999 


Q ss_pred             HHHHHHhccch
Q 023080          268 PKLLEALNLDE  278 (287)
Q Consensus       268 ~~I~~~l~~~~  278 (287)
                      ++|.+.|....
T Consensus       207 ~~I~~~l~~~l  217 (223)
T 3ld9_A          207 DDINFVHLEVI  217 (223)
T ss_dssp             CHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.57  E-value=8.1e-15  Score=124.45  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=73.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH----cCCchH--HHHHHHHh-----------------cC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA----SSGSLS--QQLSEIVN-----------------QG  110 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~----~~~~~~--~~i~~~l~-----------------~g  110 (287)
                      +++|+|+|++||||||+++.|++.+|+++++.|++++....    .+..+.  ..+.+...                 .|
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG   84 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence            56899999999999999999999999999999999986542    332221  22222211                 12


Q ss_pred             CcccHHHH-------------HHHHHHHHHhc--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080          111 KLVSDEII-------------FNLLSKRLEAG--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       111 ~~~~~~~~-------------~~~l~~~l~~~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl  175 (287)
                      ..+++.+.             ...+...+...  ....+.++|+||.....      .....++++|||+++.+++++|+
T Consensus        85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~------~~~~~~d~~i~l~~~~e~~~~R~  158 (227)
T 1cke_A           85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT------VVFPDAPVKIFLDASSEERAHRR  158 (227)
T ss_dssp             EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC------CCCTTCSEEEEEECCHHHHHHHH
T ss_pred             eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc------eEecCCCEEEEEeCCHHHHHHHH
Confidence            22222111             12233333221  11114689999973321      01234789999999999999995


Q ss_pred             h
Q 023080          176 L  176 (287)
Q Consensus       176 ~  176 (287)
                      .
T Consensus       159 ~  159 (227)
T 1cke_A          159 M  159 (227)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.57  E-value=2.3e-14  Score=117.57  Aligned_cols=110  Identities=24%  Similarity=0.305  Sum_probs=72.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .++.+|+|+|+|||||||+++.|++.+|+.++++|++++.... ....+..     ........+.+...+...+..   
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---   79 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-YDGYDEE-----YDCPILDEDRVVDELDNQMRE---   79 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-EEEEETT-----TTEEEECHHHHHHHHHHHHHH---
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-hhhhhhh-----hcCccCChHHHHHHHHHHHhc---
Confidence            3556799999999999999999999999999999998887410 0000000     000112233344444444444   


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                         .++|+|+.....-.      ...++.+|||+++++++++|+.+|+
T Consensus        80 ---g~~vv~~~~~~~~~------~~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           80 ---GGVIVDYHGCDFFP------ERWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             ---CCEEEECSCCTTSC------GGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             ---CCEEEEechhhhcc------hhcCCEEEEEECCHHHHHHHHHHcC
Confidence               36778764322110      0127899999999999999999874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.56  E-value=5e-14  Score=117.29  Aligned_cols=169  Identities=16%  Similarity=0.123  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc---CCcccHHHHH--------
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ---GKLVSDEIIF--------  119 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~---g~~~~~~~~~--------  119 (287)
                      +.++++|+|+|++||||||+++.|++. |+++++.|++.+... .+..  ..+.+.+..   ...+....+.        
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~   80 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE   80 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence            457789999999999999999999998 999999999987754 2111  222222210   1112222111        


Q ss_pred             ----------HHH-HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080          120 ----------NLL-SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       120 ----------~~l-~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                                ..+ ...+......++..+|+|+ |.....  .+.  ..+|.+|||+++++++++|+..|..        
T Consensus        81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~~~R~~~R~~--------  147 (203)
T 1uf9_A           81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEERVRRVMARSG--------  147 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHHHHHHHTTTC--------
T ss_pred             HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHHHHHHHHcCC--------
Confidence                      111 1112111111135678886 321110  011  1368999999999999999987720        


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP  268 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~  268 (287)
                                                          .+.+.+..++...   . +...++...+  +.||++++++++++
T Consensus       148 ------------------------------------~~~~~~~~~i~~~---~-~~~~~~~~ad--~vId~~~~~~~~~~  185 (203)
T 1uf9_A          148 ------------------------------------LSREEVLARERAQ---M-PEEEKRKRAT--WVLENTGSLEDLER  185 (203)
T ss_dssp             ------------------------------------CTTHHHHHHHTTS---C-CHHHHHHHCS--EEECCSSHHHHHHH
T ss_pred             ------------------------------------CCHHHHHHHHHHC---C-ChhHHHHhCC--EEEECCCCHHHHHH
Confidence                                                0112333333321   1 1222233333  36888889999999


Q ss_pred             HHHHHhccch
Q 023080          269 KLLEALNLDE  278 (287)
Q Consensus       269 ~I~~~l~~~~  278 (287)
                      +|.+.+....
T Consensus       186 ~i~~~~~~~~  195 (203)
T 1uf9_A          186 ALKAVLAELT  195 (203)
T ss_dssp             HHHHHHHSCC
T ss_pred             HHHHHHHHHH
Confidence            9999887543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.56  E-value=2e-14  Score=120.12  Aligned_cols=164  Identities=19%  Similarity=0.217  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccHHH------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSDEI------------  117 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~~~------------  117 (287)
                      ++|+|+|++||||||+++.|++ +|++++++|++.++...........+.+.+....     ......            
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 9999999999987644332222233333322111     111111            


Q ss_pred             ------HHHHH----HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080          118 ------IFNLL----SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN  187 (287)
Q Consensus       118 ------~~~~l----~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~  187 (287)
                            ....+    ...+...  .++..+|+||.......   +.  ..++.+|||++|++++++|+..|..       
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~--~~~~~~i~l~~~~e~~~~Rl~~R~~-------  146 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TY--KNYDKLIVVYAPYEVCKERAIKRGM-------  146 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CG--GGSSEEEEECCCHHHHHHHHHHTCC-------
T ss_pred             HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---ch--hhCCEEEEEECCHHHHHHHHHHcCC-------
Confidence                  11111    1111111  10157889984222111   11  1278999999999999999987621       


Q ss_pred             cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080          188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW  267 (287)
Q Consensus       188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~  267 (287)
                                                            +.+.+.++++.+    .+...++...+  +.||++++++++.
T Consensus       147 --------------------------------------~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~  182 (204)
T 2if2_A          147 --------------------------------------SEEDFERRWKKQ----MPIEEKVKYAD--YVIDNSGSIEETY  182 (204)
T ss_dssp             --------------------------------------CHHHHHHHHTTS----CCHHHHGGGCS--EECCCSSCHHHHH
T ss_pred             --------------------------------------CHHHHHHHHHhC----CChhHHHhcCC--EEEECCCCHHHHH
Confidence                                                  123444444332    12233333333  4688889999999


Q ss_pred             HHHHHHhccc
Q 023080          268 PKLLEALNLD  277 (287)
Q Consensus       268 ~~I~~~l~~~  277 (287)
                      .+|.+.+...
T Consensus       183 ~~i~~~l~~~  192 (204)
T 2if2_A          183 KQVKKVYEEL  192 (204)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            9999988643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.56  E-value=5.8e-15  Score=130.88  Aligned_cols=121  Identities=16%  Similarity=0.157  Sum_probs=77.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      |++|+|+|+|||||||+++.|++++ |+.++++| .++..+..... +.. ..+...+.....+.+...+...+... ..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~   77 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG-DS   77 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC-TT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc-cC
Confidence            4689999999999999999999985 99999997 55654433111 000 00000000011122223333333110 12


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                       +.++|+||++.+..+...+...    +.+..+|||++|.+++++|+.+|.
T Consensus        78 -g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           78 -VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             -CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred             -CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence             5789999999887766665532    235589999999999999999885

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.54  E-value=1.5e-14  Score=117.72  Aligned_cols=164  Identities=13%  Similarity=0.197  Sum_probs=88.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      +.+|+|+|++||||||+++.|+..++.++++.|++++...  +...+..+..   .|..........++.. +..     
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~-----   72 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL---EGEEGFRDREEKVINE-LTE-----   72 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH---HHHHHHHHHHHHHHHH-HHT-----
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH---HhHHHHHHHHHHHHHH-HHh-----
Confidence            4579999999999999999999999999999988877632  1222211111   0110001111122222 221     


Q ss_pred             CccEEEe---CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080          134 ESGFILD---GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL  210 (287)
Q Consensus       134 ~~g~Ild---g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~  210 (287)
                      ...+++.   |.+........+..   .+++++|+++++++.+|+..|...+                            
T Consensus        73 ~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~~r~----------------------------  121 (173)
T 1kag_A           73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRP----------------------------  121 (173)
T ss_dssp             SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC------C----------------------------
T ss_pred             CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCC----------------------------
Confidence            1355554   34444333344433   4689999999999999998764211                            


Q ss_pred             CCcccccccccCCCCc-HHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhcc
Q 023080          211 PPAHCMSKLITRADDT-EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNL  276 (287)
Q Consensus       211 ~p~~~~~~L~~r~~d~-~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~  276 (287)
                              +.. .++. .+.+...+..    ..   .+|..... +.||++ .++++++++|.+.+..
T Consensus       122 --------~~~-~~~~~~~~~~~~~~~----r~---~~~~~~a~-~~id~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A          122 --------LLH-VETPPREVLEALANE----RN---PLYEEIAD-VTIRTDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             --------CSS-SSCCCHHHHHHHHHH----HH---HHHHHHCS-EEC-----CHHHHHHHHHHHHC-
T ss_pred             --------CCC-CCCchHHHHHHHHHH----HH---HHHHhhCC-EEEECCCCCHHHHHHHHHHHHHh
Confidence                    001 1222 4444433222    12   23444333 567876 7999999999988753

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.53  E-value=1.1e-13  Score=117.18  Aligned_cols=178  Identities=16%  Similarity=0.076  Sum_probs=105.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-cccHHHH-HHHHHHHHHh-
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-LVSDEII-FNLLSKRLEA-  128 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-~~~~~~~-~~~l~~~l~~-  128 (287)
                      .++++|+|.|++||||||+++.|+++++..+.-+    ++ ...++++|+.+++++..+. ....... .-....+... 
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~----~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~   77 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL----KF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV   77 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE----ES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEE----Ee-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999998733222    22 1246778889999887643 2322221 1111111110 


Q ss_pred             ----cccCCCccEEEeCCCCC-----------HHHHHHHHHh----cCccEEEEE-ecCHHHHHHHHhCCCccccCCCcc
Q 023080          129 ----GQAGGESGFILDGFPRT-----------VKQAEILEEV----MDIDLVVNL-KLCEDVLLEKCLGRRMCSQCGGNF  188 (287)
Q Consensus       129 ----~~~~~~~g~Ildg~p~~-----------~~~~~~l~~~----~~~d~vi~L-~~~~e~l~~Rl~~R~~~~~~g~~y  188 (287)
                          +....+..+|+|-|.-+           ......+..+    ..||++||| ++|++++++|+..+. +       
T Consensus        78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-d-------  149 (216)
T 3tmk_A           78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-E-------  149 (216)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-C-------
T ss_pred             HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-c-------
Confidence                00011456788843111           0112233322    359999999 999999988864321 1       


Q ss_pred             ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEe-CCCCcccHH
Q 023080          189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD-LPGGIPESW  267 (287)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id-~~~~~eev~  267 (287)
                                                       |-+ ..+..++-.+.|.+.......  .....++.|| +++++++|+
T Consensus       150 ---------------------------------r~E-~~~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~  193 (216)
T 3tmk_A          150 ---------------------------------RYE-TVKFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVE  193 (216)
T ss_dssp             ---------------------------------TTC-CHHHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHH
T ss_pred             ---------------------------------ccc-HHHHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHH
Confidence                                             111 234443333334443322111  1245689999 999999999


Q ss_pred             HHHHHHhccch
Q 023080          268 PKLLEALNLDE  278 (287)
Q Consensus       268 ~~I~~~l~~~~  278 (287)
                      ++|.+.|....
T Consensus       194 ~~I~~~i~~~l  204 (216)
T 3tmk_A          194 ALIWQIVEPVL  204 (216)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.53  E-value=1.3e-13  Score=114.80  Aligned_cols=169  Identities=15%  Similarity=0.110  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh--cccC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA--GQAG  132 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~--~~~~  132 (287)
                      ++|+|+|+|||||||+++.|+++++..++.-..       .+...   +..++..+...+.......+..++..  ....
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence            479999999999999999999999987764210       00000   11111110000111111112222221  1111


Q ss_pred             CCccEEEeCCCCCHHH---------------HH----HHH----Hh-------cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080          133 GESGFILDGFPRTVKQ---------------AE----ILE----EV-------MDIDLVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~---------------~~----~l~----~~-------~~~d~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                       ...+|+|.++.+..-               ..    .+.    .+       ..++.+|||++|++++++|+.+|... 
T Consensus        71 -~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~-  148 (205)
T 2jaq_A           71 -LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRS-  148 (205)
T ss_dssp             ---CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCH-
T ss_pred             -cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCCh-
Confidence             235999987653110               00    011    11       35889999999999999999876310 


Q ss_pred             cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCC
Q 023080          183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGG  262 (287)
Q Consensus       183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~  262 (287)
                           +.                               .  ..+. .+.+++..+..   .+.+.|......+.||++++
T Consensus       149 -----~~-------------------------------~--~~~~-~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~  186 (205)
T 2jaq_A          149 -----EE-------------------------------L--LIGE-EYWETLNKNYE---EFYKQNVYDFPFFVVDAELD  186 (205)
T ss_dssp             -----HH-------------------------------H--HSCH-HHHHHHHHHHH---HHHHHHTTTSCEEEEETTSC
T ss_pred             -----hh-------------------------------h--cCcH-HHHHHHHHHHH---HHHHHccccCcEEEEECCCC
Confidence                 00                               0  0011 23334443333   23445542345688999999


Q ss_pred             cccHHHHHHHHhccc
Q 023080          263 IPESWPKLLEALNLD  277 (287)
Q Consensus       263 ~eev~~~I~~~l~~~  277 (287)
                      +++++++|.+.+..-
T Consensus       187 ~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          187 VKTQIELIMNKLNSI  201 (205)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.50  E-value=6.5e-13  Score=110.91  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH----cCCch--HHHHHHHHh-----------------cCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA----SSGSL--SQQLSEIVN-----------------QGKL  112 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~----~~~~~--~~~i~~~l~-----------------~g~~  112 (287)
                      +|+|+|++||||||+++.|++.+|+++++.|++.+....    .+...  ...+...+.                 .|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            799999999999999999999999999999998876532    12111  112222111                 1221


Q ss_pred             ccH----HH-------------HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080          113 VSD----EI-------------IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       113 ~~~----~~-------------~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl  175 (287)
                      +..    ..             +...+...+....    .++|+||.....      .....++++|||++|++++++|+
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~vi~g~~~~~------~~~~~~d~~i~l~a~~e~~~~R~  153 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP----PPFVAEGRDMGT------AVFPEAAHKFYLTASPEVRAWRR  153 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC----SCEEEEESSCCC------CCCTTCSEEEEEECCHHHHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc----CCEEEEccceeE------EEecCCcEEEEEECCHHHHHHHH
Confidence            111    11             1111222222221    489999864330      01123789999999999999999


Q ss_pred             hCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEE
Q 023080          176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLL  255 (287)
Q Consensus       176 ~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~  255 (287)
                      ..|..                                            .+.+.+.+++........+   ++......+
T Consensus       154 ~~r~~--------------------------------------------~~~~~~~~~~~~R~~~~~~---~~~~~ad~~  186 (208)
T 3ake_A          154 ARERP--------------------------------------------QAYEEVLRDLLRRDERDKA---QSAPAPDAL  186 (208)
T ss_dssp             HHTSS--------------------------------------------SCHHHHHHHHHHHHHTC-----CCCCCTTCE
T ss_pred             Hhhcc--------------------------------------------cCHHHHHHHHHHHHHHHhh---cccCCCCEE
Confidence            87631                                            1223444444432111110   002223457


Q ss_pred             EEeCCC-CcccHHHHHHHHhc
Q 023080          256 EFDLPG-GIPESWPKLLEALN  275 (287)
Q Consensus       256 ~id~~~-~~eev~~~I~~~l~  275 (287)
                      .||+++ +++++.++|.+.++
T Consensus       187 ~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          187 VLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             EEETTTSCHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHh
Confidence            799886 99999999988774

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.48  E-value=7.5e-13  Score=110.88  Aligned_cols=170  Identities=15%  Similarity=0.141  Sum_probs=98.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CC----chHHHHHHHHhcCCcccHH------
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SG----SLSQQLSEIVNQGKLVSDE------  116 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~----~~~~~i~~~l~~g~~~~~~------  116 (287)
                      +.++..|+|+|||||||||+++.|++.++. ...++.++.|.....   +.    .....+...+.+|.++...      
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF   88 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence            356778999999999999999999998853 223222222221000   00    0012233333444332210      


Q ss_pred             --HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEe-cCHHHHHHHHhCCCccccCCCccccc
Q 023080          117 --IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLK-LCEDVLLEKCLGRRMCSQCGGNFNVA  191 (287)
Q Consensus       117 --~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~  191 (287)
                        .....+...+..     +..+|+|+.+....   .+.....  ..++|||+ ++.+++.+|+..|.            
T Consensus        89 ~~~~~~~i~~~l~~-----g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~------------  148 (204)
T 2qor_A           89 YGTLKSEYDLAVGE-----GKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRN------------  148 (204)
T ss_dssp             EEEEHHHHHHHHHT-----TCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCT------------
T ss_pred             ecCCHHHHHHHHHc-----CCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcC------------
Confidence              001233333443     46899998654433   3333222  23789998 99999999998874            


Q ss_pred             cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080          192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL  271 (287)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~  271 (287)
                                                      .++.+.+++|+..++....+.   |.....++ |+++ ++++++++|.
T Consensus       149 --------------------------------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~v-i~n~-~~e~~~~~i~  191 (204)
T 2qor_A          149 --------------------------------TEKPEEINKRMQELTREMDEA---DKVGFNYF-IVND-DLARTYAELR  191 (204)
T ss_dssp             --------------------------------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEE-EECS-SHHHHHHHHH
T ss_pred             --------------------------------CCCHHHHHHHHHHHHHHHHHh---hhccCcEE-EECc-CHHHHHHHHH
Confidence                                            234577888887765433221   33333344 4444 8999999999


Q ss_pred             HHhccc
Q 023080          272 EALNLD  277 (287)
Q Consensus       272 ~~l~~~  277 (287)
                      +.|...
T Consensus       192 ~~i~~~  197 (204)
T 2qor_A          192 EYLLGS  197 (204)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.46  E-value=1.7e-13  Score=118.74  Aligned_cols=115  Identities=16%  Similarity=0.222  Sum_probs=71.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC----------eeehhHHHHHHHHcCCchHHHHHHHHhcCCc-------cc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP----------HIATGDLVREELASSGSLSQQLSEIVNQGKL-------VS  114 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~----------~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-------~~  114 (287)
                      .++++|+|+|++||||||+|+.|++.+|++          ++++|++.+..      ....+.. ...|..       ..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~~-~~~g~~~f~~~~~~d   92 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKAK-ALKGQFNFDHPDAFD   92 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHHH-HHTTCSCTTSGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhhh-hccCCCCCCCcchhh
Confidence            366889999999999999999999999987          79999987531      1111111 111211       11


Q ss_pred             HHHHHHHHHHHHHhcc--------------------cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHH
Q 023080          115 DEIIFNLLSKRLEAGQ--------------------AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEK  174 (287)
Q Consensus       115 ~~~~~~~l~~~l~~~~--------------------~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~R  174 (287)
                      .+.+...+.... .+.                    ......+|+||.+.....  .+..  .+|.+|||+++++++++|
T Consensus        93 ~~~l~~~L~~l~-~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~--~~d~vi~l~~~~e~~~~R  167 (252)
T 1uj2_A           93 NELILKTLKEIT-EGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD--LFQMKLFVDTDADTRLSR  167 (252)
T ss_dssp             HHHHHHHHHHHH-TTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH--HCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH--hcCeeEEEeCCHHHHHHH
Confidence            222233333322 110                    011357999996543111  1222  257999999999999999


Q ss_pred             HhCC
Q 023080          175 CLGR  178 (287)
Q Consensus       175 l~~R  178 (287)
                      +..|
T Consensus       168 ~~~R  171 (252)
T 1uj2_A          168 RVLR  171 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.45  E-value=4.1e-14  Score=118.72  Aligned_cols=174  Identities=15%  Similarity=0.095  Sum_probs=101.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhc-C--CcccHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQ-G--KLVSDEIIFNLLSK  124 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g--~~~~~~~~~~~l~~  124 (287)
                      +...++.+|+|+|++||||||+++.|++.+ ++.+++.|+++...-. . ....   ..+.. .  ..+....+...+..
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~l~~~i~~   90 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-I-ETDK---NGFLQYDVLEALNMEKMMSAISC   90 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-S-CBCT---TSCBCCSSGGGBCHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-h-hccc---cCCChhHHHHHhHHHHHHHHHHH
Confidence            334467789999999999999999999988 8999999887653110 0 0000   00000 0  00112223333333


Q ss_pred             HHHhc---cc-------CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080          125 RLEAG---QA-------GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN  194 (287)
Q Consensus       125 ~l~~~---~~-------~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~  194 (287)
                      .+...   ..       .....+|+||++....  +.+  ...+|.+||++++++++.+|+..|....            
T Consensus        91 ~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~~--~~~~d~~i~l~~~~~~~~~R~~~R~~~~------------  154 (207)
T 2qt1_A           91 WMESARHSVVSTDQESAEEIPILIIEGFLLFNY--KPL--DTIWNRSYFLTIPYEECKRRRSTRVYQP------------  154 (207)
T ss_dssp             HHHHHTTSSCCC-----CCCCEEEEECTTCTTC--GGG--TTTCSEEEEEECCHHHHHHHHHHSCCSS------------
T ss_pred             HHhCCCCCCcCCCeeecCCCCEEEEeehHHcCc--HHH--HHhcCeeEEEECCHHHHHHHHHHcCCCc------------
Confidence            22221   00       0135789999654321  111  1347899999999999999997763211            


Q ss_pred             ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHH-HHHHHHHhhchHHHHHHHhc-CcEEEEeCCCCcccHHHHHHH
Q 023080          195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK-ERLRVYNEKSQPVEEFYRNR-GKLLEFDLPGGIPESWPKLLE  272 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~-~rl~~y~~~~~~~~~~y~~~-~~~~~id~~~~~eev~~~I~~  272 (287)
                                                   ++..+.+. .....|    ....+.+... +.++.||+++++++++++|.+
T Consensus       155 -----------------------------e~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~  201 (207)
T 2qt1_A          155 -----------------------------PDSPGYFDGHVWPMY----LKYRQEMQDITWEVVYLDGTKSEEDLFLQVYE  201 (207)
T ss_dssp             -----------------------------CCCTTHHHHTHHHHH----HHHHHHGGGCSSCCEEEETTSCHHHHHHHHHH
T ss_pred             -----------------------------cchHHHHHHHHhHHH----HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHH
Confidence                                         11111121 111222    2233344443 567889999999999999999


Q ss_pred             Hhcc
Q 023080          273 ALNL  276 (287)
Q Consensus       273 ~l~~  276 (287)
                      .|..
T Consensus       202 ~l~~  205 (207)
T 2qt1_A          202 DLIQ  205 (207)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            8864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.45  E-value=5e-13  Score=114.52  Aligned_cols=42  Identities=29%  Similarity=0.369  Sum_probs=38.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      +.++.+|+|+|++||||||+++.|++.+|+++++.|++.+..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~   54 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   54 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence            456778999999999999999999999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.44  E-value=1.2e-13  Score=120.43  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=28.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCCee
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL-GVPHI   83 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i   83 (287)
                      +..++++|+|.|++||||||+++.|++.+ +..++
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i   54 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV   54 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            34578899999999999999999999998 55555

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.44  E-value=3e-13  Score=114.26  Aligned_cols=173  Identities=18%  Similarity=0.229  Sum_probs=99.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH----HHcCCchHHHHHHH-------H-----------hcCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE----LASSGSLSQQLSEI-------V-----------NQGK  111 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~----~~~~~~~~~~i~~~-------l-----------~~g~  111 (287)
                      |++|+|+|++||||||+++.|++.+|+++++.|++++..    ...+.  +..+.++       +           ..|.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~   80 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE   80 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence            568999999999999999999999999999999998864    22222  2233333       1           1232


Q ss_pred             cccHH----HHH---------HHHHHHHHh---cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080          112 LVSDE----IIF---------NLLSKRLEA---GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       112 ~~~~~----~~~---------~~l~~~l~~---~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl  175 (287)
                      .....    .+.         ..+.+.+..   .... +.++|++|--...      .....++++|||++|++++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~vi~g~~~~~------~~~~~~~~vi~l~a~~e~~~~R~  153 (219)
T 2h92_A           81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAA-EKGIVMDGRDIGT------VVLPDADLKVYMIASVEERAERR  153 (219)
T ss_dssp             ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHT-TCCEEEEESSCCC------CCCTTCSEEEEEECCHHHHHHHH
T ss_pred             cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhcc-CCcEEEEcCCccc------eecCCCCEEEEEECCHHHHHHHH
Confidence            21111    111         111111110   0111 3589999842110      01123679999999999999997


Q ss_pred             hCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCC-CCcHHHHHHHHHHHH--hhchHHHHHHHhcC
Q 023080          176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRA-DDTEEVVKERLRVYN--EKSQPVEEFYRNRG  252 (287)
Q Consensus       176 ~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~-~d~~~~i~~rl~~y~--~~~~~~~~~y~~~~  252 (287)
                      ..+..                                        .|+ .++.+.+.+++....  .....+..+|.. .
T Consensus       154 ~~~~~----------------------------------------~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~  192 (219)
T 2h92_A          154 YKDNQ----------------------------------------LRGIESNFEDLKRDIEARDQYDMNREISPLRKA-D  192 (219)
T ss_dssp             HHHHH----------------------------------------HTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-T
T ss_pred             HHHHH----------------------------------------hcCcccCHHHHHHHHHHHHHhhhhhhccccccC-C
Confidence            53200                                        011 124555666654321  111111123332 2


Q ss_pred             cEEEEeCCC-CcccHHHHHHHHhcc
Q 023080          253 KLLEFDLPG-GIPESWPKLLEALNL  276 (287)
Q Consensus       253 ~~~~id~~~-~~eev~~~I~~~l~~  276 (287)
                      ..+.||+++ ++++++++|.+.+..
T Consensus       193 d~~~Id~~~~~~ee~~~~I~~~l~~  217 (219)
T 2h92_A          193 DAVTLDTTGKSIEEVTDEILAMVSQ  217 (219)
T ss_dssp             TCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhc
Confidence            346788774 999999999998863

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.41  E-value=7.7e-12  Score=106.41  Aligned_cols=174  Identities=15%  Similarity=0.154  Sum_probs=95.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC---------------------
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG---------------------  110 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g---------------------  110 (287)
                      ..+++|.|.|++||||||+++.||+++|+++++ .++++......+.....+...-+..                     
T Consensus        12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~   90 (223)
T 3hdt_A           12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPS   90 (223)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-----------------------------------
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccc
Confidence            356789999999999999999999999999999 5777775544322111111111100                     


Q ss_pred             ---CcccHHHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHH--HhcCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080          111 ---KLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE--EVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCG  185 (287)
Q Consensus       111 ---~~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~--~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g  185 (287)
                         ....++.+.....+.+.....  ..++|++|.-..    -.+.  .-..-.++|||++|.+++.+|+.++.      
T Consensus        91 ~~~~~~~~~~~f~~~~~~i~~la~--~~~~Vi~Grggg----~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~------  158 (223)
T 3hdt_A           91 PNDKLTSPENLFKFQSEVMRELAE--SEPCIFVGRAAG----YVLDQDEDIERLIRIFVYTDKVKKVQRVMEVD------  158 (223)
T ss_dssp             -------HHHHHHHHHHHHHHHHH--HSCEEEESTTHH----HHHHHCTTCCEEEEEEEECCHHHHHHHHHHHH------
T ss_pred             cccccccHHHHHHHHHHHHHHHHh--CCCEEEEeCCcc----hhcccccCCCCeEEEEEECCHHHHHHHHHHhc------
Confidence               000111122222222222211  146888875222    1121  11112478999999999999997652      


Q ss_pred             CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHH-------hcCcEEEEe
Q 023080          186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYR-------NRGKLLEFD  258 (287)
Q Consensus       186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~-------~~~~~~~id  258 (287)
                                                            .-+.+...+++....+...+...+|.       .... +.||
T Consensus       159 --------------------------------------~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~d-l~Id  199 (223)
T 3hdt_A          159 --------------------------------------CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYD-LPIN  199 (223)
T ss_dssp             --------------------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCS-EEEE
T ss_pred             --------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCe-EEEE
Confidence                                                  01123344444444444444333331       1123 4577


Q ss_pred             CC-CCcccHHHHHHHHhccc
Q 023080          259 LP-GGIPESWPKLLEALNLD  277 (287)
Q Consensus       259 ~~-~~~eev~~~I~~~l~~~  277 (287)
                      ++ .+++++++.|...++..
T Consensus       200 T~~l~~eevv~~I~~~i~~~  219 (223)
T 3hdt_A          200 TTKLTLEETAELIKAYIRLK  219 (223)
T ss_dssp             CTTCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            65 59999999999988743

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.40  E-value=5.1e-12  Score=109.45  Aligned_cols=41  Identities=24%  Similarity=0.262  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      .++.+|+|.|++||||||+++.|+++||+.+++.|.+++..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~   65 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL   65 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence            45678999999999999999999999999999999998664

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.40  E-value=1.1e-12  Score=109.18  Aligned_cols=115  Identities=17%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC----CcccH-------------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG----KLVSD-------------  115 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g----~~~~~-------------  115 (287)
                      ..++|+|+|++||||||+++.|++.+|++++++|++.++....   ....+.+.+...    ..+..             
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~   87 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN   87 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence            4578999999999999999999999999999999999886653   222222222210    01111             


Q ss_pred             -----HHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080          116 -----EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       116 -----~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl  175 (287)
                           .+....+...+.......+..+|+|+ |...+.  .+.  ..+|.+||+++|+++.++|+
T Consensus        88 ~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~--~~~--~~~d~vi~v~a~~e~r~~Rl  147 (192)
T 2grj_A           88 LKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM--GLD--QLCDHVITVVASRETILKRN  147 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT--TGG--GGCSEEEEEECCHHHHHHHC
T ss_pred             HHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec--ChH--HhCCEEEEEECCHHHHHHHH
Confidence                 12222222222211100024577775 432221  111  13689999999999999998

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.40  E-value=6.6e-12  Score=105.16  Aligned_cols=118  Identities=14%  Similarity=0.104  Sum_probs=64.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-cc------------cHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-LV------------SDEIIFN  120 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-~~------------~~~~~~~  120 (287)
                      .++|.|.|++||||||+++.||+++|+++++ +++++......+.....+...-+... +.            ..+.+..
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI   84 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence            4589999999999999999999999999999 78876532221111111111111000 00            0001112


Q ss_pred             HHHHHHHhccc-CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          121 LLSKRLEAGQA-GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       121 ~l~~~l~~~~~-~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      ...+.+..... . ..++|++|.-.+    -.+.. ..-.+.|||++|.+++.+|+.++
T Consensus        85 ~~~~~i~~la~~~-~~~~Vi~Gr~g~----~vl~~-~~~~~~V~L~A~~e~r~~R~~~~  137 (201)
T 3fdi_A           85 RQFNFIRKKANEE-KESFVIVGRCAE----EILSD-NPNMISAFILGDKDTKTKRVMER  137 (201)
T ss_dssp             HHHHHHHHHHHTS-CCCEEEESTTHH----HHTTT-CTTEEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc-CCCEEEEECCcc----hhcCC-CCCeEEEEEECCHHHHHHHHHHH
Confidence            22222222210 1 257888874211    01111 01247899999999999999765

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.39  E-value=5.3e-13  Score=112.36  Aligned_cols=109  Identities=17%  Similarity=0.116  Sum_probs=62.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC------CCeeehhHHHHHHHHcCCchH-HHHHHHHhcCCcccHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG------VPHIATGDLVREELASSGSLS-QQLSEIVNQGKLVSDEIIFNLLSK  124 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg------~~~i~~d~llr~~~~~~~~~~-~~i~~~l~~g~~~~~~~~~~~l~~  124 (287)
                      .++++|+|+|++||||||+++.|++.++      +.+++.|. ++..+.....+. ..-...+        ..+...+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~   93 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVAKL   93 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHHHH
Confidence            3578899999999999999999999886      66777543 333221110000 0000000        001111222


Q ss_pred             HHHhcccCCCccEEEeCCCCC-HHHHHHHHHh----------cCccEEEEEecCHHHHHHHH
Q 023080          125 RLEAGQAGGESGFILDGFPRT-VKQAEILEEV----------MDIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~-~~~~~~l~~~----------~~~d~vi~L~~~~e~l~~Rl  175 (287)
                      .+..     +..+|+| +... ....+.+...          ..|+++|||++|++++.+|+
T Consensus        94 ~l~~-----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           94 FADS-----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHHT-----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHHC-----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            2322     3568888 4431 1223333321          24689999999999999885

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.36  E-value=9.9e-12  Score=101.25  Aligned_cols=118  Identities=14%  Similarity=0.072  Sum_probs=64.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHHHHHHHcCC--chHHHHHHHHhcCCcc-c---HHHH---HHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLVREELASSG--SLSQQLSEIVNQGKLV-S---DEII---FNLL  122 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~llr~~~~~~~--~~~~~i~~~l~~g~~~-~---~~~~---~~~l  122 (287)
                      ++.|+|+|+|||||||+++.|+++++..++  ++|++.........  ..+..+.   ..+... .   ....   ...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc---CCCccccchhHHHHHHHHHHHH
Confidence            468999999999999999999999987665  47665443111000  0000000   000000 0   0111   1112


Q ss_pred             HHHHHhcccCCCccEEEeCCCC-CHHHH-HHHHHhcC-ccEEEEEecCHHHHHHHHhCCC
Q 023080          123 SKRLEAGQAGGESGFILDGFPR-TVKQA-EILEEVMD-IDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~-~~~~~-~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ...+..     +..+|+|+... ..... ...+.+.. +..+|||+++.+++.+|+..|.
T Consensus        80 ~~~~~~-----g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A           80 VAMARA-----GARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHHT-----TCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHhc-----CCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence            222221     35689998543 22212 22222222 3367899999999999998874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.33  E-value=5.8e-12  Score=103.67  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH--HHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL--LSK  124 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~--l~~  124 (287)
                      .++.+|+|+|+|||||||+++.|++.++     +.+++.|. ++..+.....+...-.          ...+..+  +..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~   79 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAGFTREER----------LRHLKRIAWIAR   79 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence            4678999999999999999999999885     34566644 3432221100000000          0011111  111


Q ss_pred             HHHhcccCCCccEEEeCCCCCHHHHHHHH----HhcCccEEEEEecCHHHHHHHHh
Q 023080          125 RLEAGQAGGESGFILDGFPRTVKQAEILE----EVMDIDLVVNLKLCEDVLLEKCL  176 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~~~~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~  176 (287)
                      .+...    +..+|+|++.........+.    ..+.++++|||++|++++.+|+.
T Consensus        80 ~~~~~----g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~  131 (186)
T 2yvu_A           80 LLARN----GVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP  131 (186)
T ss_dssp             HHHTT----TCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred             HHHhC----CCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence            11111    23466677544333222222    22347899999999999999974

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.30  E-value=7.7e-11  Score=104.01  Aligned_cols=119  Identities=12%  Similarity=0.109  Sum_probs=73.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSDEIIFNLLS  123 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~~~~~~~l~  123 (287)
                      ..+|..|+|+|||||||||+++.|++++  +..+|+.|. ++.....   ....+.. +....     .....+....+.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~-~~~~a~~~~~~~~~~~~~~~v~  104 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKL-YEKDVVKHVTPYSNRMTEAIIS  104 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHH-HGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHH-ccchhhhhhhHHHHHHHHHHHH
Confidence            3467899999999999999999999998  788899854 4431111   1111111 11100     011122223344


Q ss_pred             HHHHhcccCCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHH----HHHHhCCC
Q 023080          124 KRLEAGQAGGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVL----LEKCLGRR  179 (287)
Q Consensus       124 ~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l----~~Rl~~R~  179 (287)
                      ..+..     +..+|+|+...+..+...+..    .+.+..++++.+|++++    .+|+..|.
T Consensus       105 ~~l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~  163 (287)
T 1gvn_B          105 RLSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY  163 (287)
T ss_dssp             HHHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence            44443     368999998888665444322    23344578999999999    88886653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.26  E-value=5.8e-12  Score=107.51  Aligned_cols=79  Identities=14%  Similarity=0.040  Sum_probs=37.7

Q ss_pred             CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHH
Q 023080          157 DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV  236 (287)
Q Consensus       157 ~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~  236 (287)
                      .||++|||++|++++++|+.+|....                                      .+ ... ..+.+|+..
T Consensus       146 ~pD~vi~Ld~~~e~~~~Ri~~R~r~~--------------------------------------e~-~~~-~~~~~rv~~  185 (230)
T 2vp4_A          146 QADLIIYLRTSPEVAYERIRQRARSE--------------------------------------ES-CVP-LKYLQELHE  185 (230)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGG--------------------------------------GT-TCC-HHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCcc--------------------------------------cc-cCc-HHHHHHHHH
Confidence            49999999999999999998663100                                      00 111 134445554


Q ss_pred             HHhhchHHHHHH-HhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          237 YNEKSQPVEEFY-RNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       237 y~~~~~~~~~~y-~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                      ++....  ..|+ ...+.++.||+++++++++++|.+.+...
T Consensus       186 ~~~~~~--~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~  225 (230)
T 2vp4_A          186 LHEDWL--IHQRRPQSCKVLVLDADLNLENIGTEYQRSESSI  225 (230)
T ss_dssp             HHHHHH--TSCCSSCCCEEEEEECCC----------------
T ss_pred             HHHHHH--HHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            433221  1111 33456889999999999999999988643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.24  E-value=1.9e-11  Score=105.80  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHc----CCchHHHHHHHHhcCCcccHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELAS----SGSLSQQLSEIVNQGKLVSDEIIFNLLSK  124 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~----~~~~~~~i~~~l~~g~~~~~~~~~~~l~~  124 (287)
                      ..+|..|+|+|+|||||||+++.|++.++  ..+++.|. ++..+..    ....+..+.++...   .....+..++..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~  104 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK  104 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence            44678999999999999999999999986  45667654 3331110    00111111111110   001122222222


Q ss_pred             HHHhcccCCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCC
Q 023080          125 RLEAGQAGGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+..     +.+||+||++.+..+...+..    .+.+-.++++++|.+++.+|+..|.
T Consensus       105 ~~~~-----g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          105 LSSL-----GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HHHT-----TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHhc-----CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence            2222     358999999887665443332    2333346788999999999998774

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.24  E-value=2.1e-10  Score=97.98  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=36.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      +..|++|+|.||+||||||+++.|++++|+.+++.|.+.+..
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            346789999999999999999999999999999999998774

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.23  E-value=5.4e-11  Score=97.19  Aligned_cols=111  Identities=19%  Similarity=0.211  Sum_probs=62.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehh-HHHHHHHHcC-CchHHHHHHHHhcCCcccHHHHHHHH--HH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATG-DLVREELASS-GSLSQQLSEIVNQGKLVSDEIIFNLL--SK  124 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d-~llr~~~~~~-~~~~~~i~~~l~~g~~~~~~~~~~~l--~~  124 (287)
                      .++.+|+|+|++||||||+++.|++.+   |++++.++ +.++..+... ......           ..+.+..+.  ..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~   71 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED-----------REENVRRIAEVAK   71 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH-----------HHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc-----------HHHHHHHHHHHHH
Confidence            357889999999999999999999998   98887553 3333211110 000000           011111111  11


Q ss_pred             HHHhcccCCCccEEEeCCCCC----HHHHHHH-HHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          125 RLEAGQAGGESGFILDGFPRT----VKQAEIL-EEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~----~~~~~~l-~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      .+...     ..+++.++...    ......+ ...+.|+.+|||++|++++++|+.++
T Consensus        72 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~  125 (179)
T 2pez_A           72 LFADA-----GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG  125 (179)
T ss_dssp             HHHHT-----TCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred             HHHHC-----CCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence            12121     13444444322    1221222 22345789999999999999998654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.22  E-value=6.3e-11  Score=109.90  Aligned_cols=101  Identities=17%  Similarity=0.079  Sum_probs=74.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ...+.+|+|+|+|||||||+++.|++.+++.+++.|++ +       .                .......+...+..  
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~----------------~~~~~~~~~~~l~~--  308 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------S----------------WQRCVSSCQAALRQ--  308 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------S----------------HHHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------H----------------HHHHHHHHHHHHhc--
Confidence            34677899999999999999999999999999999775 0       0                11122233333443  


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCc
Q 023080          131 AGGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRM  180 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~  180 (287)
                         +..+|+|+......+...+..    .+.+..+|+|+++.+++++|+..|..
T Consensus       309 ---g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          309 ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             ---TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             ---CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence               368999998877766655433    23355789999999999999998853

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.21  E-value=2.3e-10  Score=98.14  Aligned_cols=27  Identities=26%  Similarity=0.260  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +|++|+|.|++||||||+++.|+++++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999999993

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.13  E-value=6.3e-11  Score=98.58  Aligned_cols=167  Identities=16%  Similarity=0.213  Sum_probs=87.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH---cCC----chHHHHHHHHhcCCcccH--------HH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA---SSG----SLSQQLSEIVNQGKLVSD--------EI  117 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~---~~~----~~~~~i~~~l~~g~~~~~--------~~  117 (287)
                      ++.+|+|+||+||||||+++.|+..++...++..++.+....   .+.    .....+......+.+...        ..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            566899999999999999999998764333322111111000   000    000112222211111000        00


Q ss_pred             HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080          118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKG  197 (287)
Q Consensus       118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~  197 (287)
                      ....+...+..     +..+|+|+.+....+..  .....+..++.+..+.+++.+|+.+|.                  
T Consensus        86 ~~~~i~~~l~~-----g~~vi~d~~~~~~~~~~--~~~~~~~~v~~~~~~~e~l~~Rl~~R~------------------  140 (205)
T 3tr0_A           86 EKDWVLRQLKA-----GRDVLLEIDWQGARQIR--ELFPPALSIFILPPSIEALRERLIKRR------------------  140 (205)
T ss_dssp             EHHHHHHHHHT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSCHHHHHHHHHTCT------------------
T ss_pred             hHHHHHHHHHc-----CCeEEEEECHHHHHHHH--HhCCCcEEEEEECcCHHHHHHHHHHhC------------------
Confidence            01123333333     35788887544433322  222233334444456999999999884                  


Q ss_pred             CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                                .++.+.++.|+..+...    .+++...+ ++.+ ++ ++++++++|.++|...
T Consensus       141 --------------------------~~~~~~i~~rl~~~~~~----~~~~~~~d-~vi~-n~-~~~~~~~~l~~~i~~~  187 (205)
T 3tr0_A          141 --------------------------QDDTAIIEQRLALAREE----MAHYKEFD-YLVV-ND-NFDQAVQNLIHIISAE  187 (205)
T ss_dssp             --------------------------TSCSSTHHHHHHHHHHH----HTTGGGCS-EEEE-CS-SHHHHHHHHHHHHHHH
T ss_pred             --------------------------CCCHHHHHHHHHHHHHH----HhcccCCC-EEEE-CC-CHHHHHHHHHHHHHHH
Confidence                                      22334566777776443    23343333 3334 34 8999999999998753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.13  E-value=4.6e-10  Score=108.41  Aligned_cols=113  Identities=21%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehh-HHHHHHHHcCCchH-HHHHHHHhcCCcccHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATG-DLVREELASSGSLS-QQLSEIVNQGKLVSDEIIFNLLSKR  125 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d-~llr~~~~~~~~~~-~~i~~~l~~g~~~~~~~~~~~l~~~  125 (287)
                      +.++++|+|+|+|||||||+++.|++++   |..++.+| +.++..+.....+. ..-.+.+.       . +..++...
T Consensus        49 ~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r-------~-i~eva~~~  120 (630)
T 1x6v_B           49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR-------R-IAEVAKLF  120 (630)
T ss_dssp             SCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH-------H-HHHHHHHH
T ss_pred             cCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH-------H-HHHHHHHH
Confidence            3478899999999999999999999999   98887774 45544222111111 00001110       0 11111111


Q ss_pred             HHhcccCCCccEEEeCCCCC----HHHHHHH-HHhcCccEEEEEecCHHHHHHHHhC
Q 023080          126 LEAGQAGGESGFILDGFPRT----VKQAEIL-EEVMDIDLVVNLKLCEDVLLEKCLG  177 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~----~~~~~~l-~~~~~~d~vi~L~~~~e~l~~Rl~~  177 (287)
                      +..     +..+|.+ +...    ......+ ...+.++++|||++|.+++.+|+.+
T Consensus       121 l~~-----G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r  171 (630)
T 1x6v_B          121 ADA-----GLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK  171 (630)
T ss_dssp             HHT-----TCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             HhC-----CCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence            221     2334444 3222    1222222 2223468899999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.13  E-value=2.9e-12  Score=107.51  Aligned_cols=122  Identities=20%  Similarity=0.198  Sum_probs=64.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch-HHHHHHHHhc--CCcccHHHHHHHHH--------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL-SQQLSEIVNQ--GKLVSDEIIFNLLS--------  123 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~--g~~~~~~~~~~~l~--------  123 (287)
                      ++|+|+|++||||||+++.|++.++...+++. ++++ ...++.. +..+...+..  +....+.....++.        
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   78 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV   78 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence            47899999999999999999999864333221 0000 0000111 2223222211  10111111111110        


Q ss_pred             HHHHhcccCCCccEEEeCCCCCH--HH------------HHHHHHh-----c--CccEEEEEecCHHHHHHHHhCCC
Q 023080          124 KRLEAGQAGGESGFILDGFPRTV--KQ------------AEILEEV-----M--DIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       124 ~~l~~~~~~~~~g~Ildg~p~~~--~~------------~~~l~~~-----~--~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..+...... +..+|+|+++.+.  .+            ...+...     .  .||.+|+|++|++++++|+..|.
T Consensus        79 ~~i~~~l~~-g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~  154 (214)
T 1gtv_A           79 HTIQGLCRG-YDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA  154 (214)
T ss_dssp             HHHHHEEEE-EEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHhhC-CCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccc
Confidence            112221111 4578999987542  11            1122222     1  58999999999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.12  E-value=9e-10  Score=92.36  Aligned_cols=169  Identities=17%  Similarity=0.198  Sum_probs=87.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CC----chHHHHHHHHhcCCcccHH------
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SG----SLSQQLSEIVNQGKLVSDE------  116 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~----~~~~~i~~~l~~g~~~~~~------  116 (287)
                      +.++.+|+|+||+||||||+++.|++.++. .........+.....   +.    .....+...+..+.++...      
T Consensus         5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~   84 (208)
T 3tau_A            5 TERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNY   84 (208)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             cCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEcccc
Confidence            346778999999999999999999998853 222221111110000   00    0112233333333322110      


Q ss_pred             --HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC-HHHHHHHHhCCCccccCCCccccccc
Q 023080          117 --IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVANI  193 (287)
Q Consensus       117 --~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~~  193 (287)
                        .....+...+..     +..+|+|..+....   .+........+||+..+ .+++.+|+.+|.              
T Consensus        85 yg~~~~~i~~~l~~-----g~~vild~~~~g~~---~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~--------------  142 (208)
T 3tau_A           85 YGTPLEYVEEKLAA-----GVDIFLEIEVQGAM---QVRKAMPEGIFIFLTPPDLSELKNRIIGRG--------------  142 (208)
T ss_dssp             EEEEHHHHHHHHHT-----TCCEEEECCHHHHH---HHHHHCTTSEEEEEECTTTTTSSCC-------------------
T ss_pred             CCCcHHHHHHHHHc-----CCeEEEEeeHHHHH---HHHHhCCCeEEEEEeCCCHHHHHHHHHhcC--------------
Confidence              001223333333     36788886443332   23322222245555544 677777776653              


Q ss_pred             cccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHH
Q 023080          194 NVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEA  273 (287)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~  273 (287)
                                                    .++.+.+++|++.+....    .++...+ ++.+| + ++++++.+|..+
T Consensus       143 ------------------------------~~~~e~i~~Rl~~~~~e~----~~~~~~d-~vivN-~-~~~~~~~~l~~~  185 (208)
T 3tau_A          143 ------------------------------TESMEVVEERMETAKKEI----EMMASYD-YAVVN-D-VVANAVQKIKGI  185 (208)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHH----HHGGGSS-EEEEC-S-SHHHHHHHHHHH
T ss_pred             ------------------------------CCCHHHHHHHHHHHHHHH----HhhccCC-EEEEC-c-CHHHHHHHHHHH
Confidence                                          455678888888876532    2333333 44454 3 699999999999


Q ss_pred             hccch
Q 023080          274 LNLDE  278 (287)
Q Consensus       274 l~~~~  278 (287)
                      |..+.
T Consensus       186 i~~~~  190 (208)
T 3tau_A          186 VETEH  190 (208)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.12  E-value=4.2e-10  Score=93.71  Aligned_cols=110  Identities=14%  Similarity=0.068  Sum_probs=63.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHHHHHcCC-chHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVREELASSG-SLSQQLSEIVNQGKLVSDEIIFNLLSKR  125 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~~~~~~~-~~~~~i~~~l~~g~~~~~~~~~~~l~~~  125 (287)
                      .++.+|+|+|++||||||+++.|+..+   |..  +++.+++... +.... .........+.        .+. .+...
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-~~~~~~~~~~~~~~~~~--------~~~-~~~~~   92 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-LNRDLSFKAEDRAENIR--------RVG-EVAKL   92 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-TTTTCCSSHHHHHHHHH--------HHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-hhcccCcChHHHHHHHH--------HHH-HHHHH
Confidence            367789999999999999999999998   666  7887655321 11110 01111111000        001 11122


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHHH
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~Rl  175 (287)
                      +...    +..+|.++........+.+.....  .-++|||+++.+++.+|+
T Consensus        93 ~~~~----~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           93 FADA----GIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HHHT----TCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred             HHhC----CceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence            2222    345666654344445555555433  235699999999999997

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.11  E-value=5.5e-11  Score=99.02  Aligned_cols=166  Identities=13%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHH---cCC----chHHHHHHHHhcCCcccHH--------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELA---SSG----SLSQQLSEIVNQGKLVSDE--------  116 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~---~~~----~~~~~i~~~l~~g~~~~~~--------  116 (287)
                      ++.+|+|+|++||||||+++.|+..+ ....+..+...+....   .+.    .....+......|..+...        
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   84 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG   84 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence            46789999999999999999999977 2222222111111000   000    0012233333333322110        


Q ss_pred             HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc-EEEEEe-cCHHHHHHHHhCCCccccCCCcccccccc
Q 023080          117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDID-LVVNLK-LCEDVLLEKCLGRRMCSQCGGNFNVANIN  194 (287)
Q Consensus       117 ~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~  194 (287)
                      .....+...+..     +..+|+|+.+....+   +.... ++ ++|++. ++.+++.+|+..|.               
T Consensus        85 ~~~~~i~~~l~~-----g~~vv~d~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~---------------  140 (207)
T 2j41_A           85 TPVQYVKDTMDE-----GHDVFLEIEVEGAKQ---VRKKF-PDALFIFLAPPSLEHLRERLVGRG---------------  140 (207)
T ss_dssp             EEHHHHHHHHHT-----TCEEEEECCGGGHHH---HHHHC-TTSEEEEEECCC---------------------------
T ss_pred             CCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhc-CCeEEEEEECCCHHHHHHHHHhcC---------------
Confidence            011223333333     357899986554332   22222 35 334443 56789999998763               


Q ss_pred             ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                                   +++.+.+.+|+..+.....    ++...+ ++ |+++ ++++++++|.+.|
T Consensus       141 -----------------------------~~~~~~~~~rl~~~~~~~~----~~~~~d-~v-I~n~-~~e~~~~~i~~~l  184 (207)
T 2j41_A          141 -----------------------------TESDEKIQSRINEARKEVE----MMNLYD-YV-VVND-EVELAKNRIQCIV  184 (207)
T ss_dssp             --------------------------------------------CGGG----GGGGCS-EE-EECS-SHHHHHHHHHHHH
T ss_pred             -----------------------------CCCHHHHHHHHHHHHHHHh----ccccCC-EE-EECC-CHHHHHHHHHHHH
Confidence                                         2334566667776654322    333333 44 4445 8999999999998


Q ss_pred             ccch
Q 023080          275 NLDE  278 (287)
Q Consensus       275 ~~~~  278 (287)
                      ....
T Consensus       185 ~~~~  188 (207)
T 2j41_A          185 EAEH  188 (207)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.11  E-value=1.6e-10  Score=95.46  Aligned_cols=163  Identities=13%  Similarity=0.133  Sum_probs=100.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHcCCc--------hHHHHHHHHhcCCcccHHH--------HH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELASSGS--------LSQQLSEIVNQGKLVSDEI--------IF  119 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~~~~--------~~~~i~~~l~~g~~~~~~~--------~~  119 (287)
                      |+|+||+||||||+++.|.+.+.- ..+++....|.. ..+..        ....+...+.+|.++....        ..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            889999999999999999988742 334443343331 11111        2356777778887754321        12


Q ss_pred             HHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080          120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKG  197 (287)
Q Consensus       120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~  197 (287)
                      ..+...+..     +..+|+|.-+...   ..+....  .+..++.+..+.+++.+|+.+|+                  
T Consensus        83 ~~v~~~l~~-----g~~vil~id~~g~---~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg------------------  136 (186)
T 1ex7_A           83 ASVKQVSKS-----GKTCILDIDMQGV---KSVKAIPELNARFLFIAPPSVEDLKKRLEGRG------------------  136 (186)
T ss_dssp             HHHHHHHHH-----TSEEEEECCHHHH---HHHHTCGGGCCEEEEEECSCHHHHHHHHHHHC------------------
T ss_pred             ceeeehhhC-----CCEEEecCCHHHH---HHHHHhcccCceEEEEeCCCHHHHHHHHHhcC------------------
Confidence            344455555     3678898654443   3344332  23344445556789999998874                  


Q ss_pred             CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                                .++.+.+++|+........   ..+......+.+|  .+.++.+++|.++|..+
T Consensus       137 --------------------------~e~~e~i~~Rl~~a~~e~~---~~~~~~fD~vIvN--ddle~a~~~l~~iI~ae  185 (186)
T 1ex7_A          137 --------------------------TETEESINKRLSAAQAELA---YAETGAHDKVIVN--DDLDKAYKELKDFIFAE  185 (186)
T ss_dssp             --------------------------CSCHHHHHHHHHHHHHHHH---HHTTTCSSEEEEC--SSHHHHHHHHHHHHTTC
T ss_pred             --------------------------CCCHHHHHHHHHHHHHHHh---hccccCCcEEEEC--cCHHHHHHHHHHHHHhc
Confidence                                      5678899999988765432   1111112334444  37999999999988654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.08  E-value=1.1e-10  Score=111.24  Aligned_cols=121  Identities=15%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-----eeehhHHHHHHHHcCCchHHHHHHHHhcCCc----ccHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVP-----HIATGDLVREELASSGSLSQQLSEIVNQGKL----VSDEIIFNL  121 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~-----~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~----~~~~~~~~~  121 (287)
                      ...+.+|+|+|+|||||||+|+.|++.+++.     +++.|++.+. ........    +++.....    ....+....
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~-~~~~~~~~----~~f~~~~~~~~~~re~~~~~~  106 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE-AVKQYSSY----NFFRPDNEEAMKVRKQCALAA  106 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHSCCCCG----GGGCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH-hccCCccc----cccCcccHHHHHHHHHHHHHH
Confidence            3467789999999999999999999998543     4677886555 33221110    11111000    001111112


Q ss_pred             HH---HHHHhcccCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecC-HHHHHHHHhCCC
Q 023080          122 LS---KRLEAGQAGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLC-EDVLLEKCLGRR  179 (287)
Q Consensus       122 l~---~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~-~e~l~~Rl~~R~  179 (287)
                      +.   ..+...  . +..+|+|+...+..+...+...    +..-++|++.++ ++.+.+|+..|.
T Consensus       107 l~~~~~~L~~~--~-g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~  169 (520)
T 2axn_A          107 LRDVKSYLAKE--G-GQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK  169 (520)
T ss_dssp             HHHHHHHHHHS--C-CCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhc--C-CceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence            21   122111  1 4689999988887766555332    222345666676 677788886654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.02  E-value=6.7e-10  Score=106.28  Aligned_cols=112  Identities=17%  Similarity=0.121  Sum_probs=66.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRL  126 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l  126 (287)
                      ..+++|+|+|++||||||+++.|+++++.     .+++. |.++..+.....+...-....     +  +.+...+...+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-----l--~~i~~~~~~~l  441 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-----I--LRVGFVASEIV  441 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-----H--HHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-----H--HHHHHHHHHHH
Confidence            45788999999999999999999999863     67776 445554322211111000000     0  01111222222


Q ss_pred             HhcccCCCccEEEeCCCCCHHHHHHHHHhc-Ccc-EEEEEecCHHHHHHHHh
Q 023080          127 EAGQAGGESGFILDGFPRTVKQAEILEEVM-DID-LVVNLKLCEDVLLEKCL  176 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d-~vi~L~~~~e~l~~Rl~  176 (287)
                      ..     +.++|+|+..........+.... .++ ++|+|++|.+++.+|+.
T Consensus       442 ~~-----G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          442 KH-----NGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             HT-----TCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred             hC-----CCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence            22     46899996443333333333332 357 78999999999999985

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.92  E-value=2.7e-09  Score=102.60  Aligned_cols=112  Identities=14%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC----C--CeeehhHHHHHHHHcCCchHHHH-HHHHhcCCcccHHHHHHHH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLG----V--PHIATGDLVREELASSGSLSQQL-SEIVNQGKLVSDEIIFNLL  122 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg----~--~~i~~d~llr~~~~~~~~~~~~i-~~~l~~g~~~~~~~~~~~l  122 (287)
                      ...++++|+|+|+|||||||+|+.|+++++    .  .+++. |.++..+.........- ...+        ..+..++
T Consensus       392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~  462 (573)
T 1m8p_A          392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVA  462 (573)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHH
T ss_pred             ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHH
Confidence            445778999999999999999999999986    3  45555 45555332111111000 0000        0011122


Q ss_pred             HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHh-c--CccEEEEEecCHHHHHHHH
Q 023080          123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-M--DIDLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~-~--~~d~vi~L~~~~e~l~~Rl  175 (287)
                      ...+..     +..+|+|..-........+... .  .+.++|||++|.+++.+|.
T Consensus       463 ~~~~~~-----g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          463 TELTRA-----GAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             HHHHHT-----TCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC
T ss_pred             HHHHhC-----CCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh
Confidence            222222     2456665322112222222221 1  2458999999999999995

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.90  E-value=2.6e-09  Score=92.42  Aligned_cols=120  Identities=22%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH-HHH--cCCchHHHHHH---H-H-----hcCCcccHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE-ELA--SSGSLSQQLSE---I-V-----NQGKLVSDEIIFNLL  122 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~-~~~--~~~~~~~~i~~---~-l-----~~g~~~~~~~~~~~l  122 (287)
                      ..|+|+||+||||||+|+.|+++++..+++.|++... .+.  ...+.......   . +     .++ .+....+....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~   80 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL   80 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence            4689999999999999999999999999999886421 000  00010000000   0 0     000 12233344444


Q ss_pred             HHHHHhcccCCCccEEEeCCCCCHHHHHH-HHHh---cCc-cEEEEEecCH-HHHHHHHhCCC
Q 023080          123 SKRLEAGQAGGESGFILDGFPRTVKQAEI-LEEV---MDI-DLVVNLKLCE-DVLLEKCLGRR  179 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~-l~~~---~~~-d~vi~L~~~~-e~l~~Rl~~R~  179 (287)
                      ...+ ..... +..+|++|...  ...+. +...   ... -.+|||++|. +++.+|+.+|.
T Consensus        81 ~~~i-~~~~~-g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           81 IFEV-DWRKS-EEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             HHHH-HTTTT-SSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHH-HHHhC-CCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            4444 32222 45678876332  22222 2220   112 2689999997 99999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.89  E-value=1.6e-08  Score=82.88  Aligned_cols=118  Identities=22%  Similarity=0.270  Sum_probs=63.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      ++.+|+|+|++||||||+++.|+..++..  +++.+++... .......+     ++.+.. .+...+...+........
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~~   80 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRYA   80 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccC-----Cccchh-hhhHHHHHHHHHHHHHHh
Confidence            56789999999999999999999876544  7777776432 11100000     000000 001111222211111000


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .. +..+++|++.... ....+.....+-.++++.++.++++.|+..|.
T Consensus        81 ~~-~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~  127 (191)
T 1zp6_A           81 KE-GYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRG  127 (191)
T ss_dssp             HT-SCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred             cc-CCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC
Confidence            11 2457888865432 22223222223357899999999999998873

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.87  E-value=2e-08  Score=82.45  Aligned_cols=114  Identities=18%  Similarity=0.128  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      .+|+|+||+||||||+++.|+..++. .+++.+++.+. . ......+..       ...+...+...+.......... 
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~-~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~-   72 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-V-VGGYRPPWE-------SDELLALTWKNITDLTVNFLLA-   72 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-C-CTTCCCGGG-------CHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-h-ccccccCcc-------chhHHHHHHHHHHHHHHHHHhc-
Confidence            46899999999999999999998765 77887665432 1 000000000       0000111112221111111011 


Q ss_pred             CccEEEeCCCCCHHHHHHHHHh----c-C-ccEEEEEecCHHHHHHHHhCCC
Q 023080          134 ESGFILDGFPRTVKQAEILEEV----M-D-IDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       134 ~~g~Ildg~p~~~~~~~~l~~~----~-~-~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      +..+|+|++. .....+.+...    + . .-.+++|.++.+++.+|+..|.
T Consensus        73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence            3468999853 33322222222    2 1 2346889999999999998874

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.76  E-value=8.2e-08  Score=79.81  Aligned_cols=120  Identities=14%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHH-cCC-chHHHHHHHHhcCCcccHHHH--HHHH--
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELA-SSG-SLSQQLSEIVNQGKLVSDEII--FNLL--  122 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~-~~~-~~~~~i~~~l~~g~~~~~~~~--~~~l--  122 (287)
                      .++++|+|+|.|||||+|+++.|.+.+|   +.+++++|.+++... ..+ .....+.+---. +.....+.  ...+  
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~yk-E~~R~~m~~~g~~~R~   87 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYK-EAFRKDMIRWGEEKRQ   87 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CC-SSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhH-HHHHHHHHHHHHHHHh
Confidence            3667899999999999999999999885   778999999996433 211 111110000000 00000000  0000  


Q ss_pred             ------HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCc-cEEEEEecCHHHHHHHH
Q 023080          123 ------SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDI-DLVVNLKLCEDVLLEKC  175 (287)
Q Consensus       123 ------~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~-d~vi~L~~~~e~l~~Rl  175 (287)
                            ...... ... ...||+||. +.....+.+....+. -.+|.+.+++++..+|.
T Consensus        88 ~d~~~~~~~~~~-~~~-~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           88 ADPGFFCRKIVE-GIS-QPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             HCTTTTHHHHSB-TCC-CSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred             cCchHHHHHHHH-hcC-CCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence                  111111 111 346999987 666677777765333 34789999999999994

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.75  E-value=3.6e-08  Score=82.28  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLV   89 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~ll   89 (287)
                      ++.+|.|+|++||||||+++.|+..++  +.+++.|..+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            567899999999999999999999988  8888876654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.72  E-value=4e-08  Score=83.35  Aligned_cols=26  Identities=35%  Similarity=0.300  Sum_probs=17.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH-HHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLS-KFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La-~~l   78 (287)
                      ++.+|+|+||+||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45689999999999999999999 765

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.69  E-value=7e-09  Score=91.53  Aligned_cols=38  Identities=16%  Similarity=0.258  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVR   90 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr   90 (287)
                      ++++|+|+|++||||||+++.|++.+|     +.++++|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567899999999999999999999887     78899988764

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.67  E-value=9.6e-08  Score=85.60  Aligned_cols=28  Identities=21%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ++++|+|.|+.||||||+++.|++.++.
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5689999999999999999999999854

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.67  E-value=1.7e-07  Score=80.33  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      ++.+|.|+||+||||||+++.|+..+|..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            56789999999999999999999988865

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.62  E-value=6.4e-08  Score=90.97  Aligned_cols=119  Identities=14%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchHHHHHHHHhcCCc----ccHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLSQQLSEIVNQGKL----VSDEIIFNLL  122 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~----~~~~~~~~~l  122 (287)
                      ..+..|+|+|.|||||||+++.|++.++.     .+++.+++.+. ........    +++..+..    .........+
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-~~g~~~~~----~ifd~~g~~~~r~re~~~~~~l  111 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-MVKTYKSF----EFFLPDNEEGLKIRKQCALAAL  111 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHCSCCCG----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-hccCCCcc----cccCCCCHHHHHHHHHHHHHHH
Confidence            46788999999999999999999998753     45666554443 32221000    11111110    0001111222


Q ss_pred             ---HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc-C-ccEEEEEe---cCHHHHHHHHhCC
Q 023080          123 ---SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-D-IDLVVNLK---LCEDVLLEKCLGR  178 (287)
Q Consensus       123 ---~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~-~d~vi~L~---~~~e~l~~Rl~~R  178 (287)
                         ...+...   ++.++|+|+...+..+.+.+.... . -..+++|+   .+++.+.+|+..+
T Consensus       112 ~~~~~~l~~~---~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~  172 (469)
T 1bif_A          112 NDVRKFLSEE---GGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  172 (469)
T ss_dssp             HHHHHHHHTT---CCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhC---CCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence               2222211   145799999877776665553321 1 11356666   4578888888654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.62  E-value=2.3e-08  Score=83.20  Aligned_cols=119  Identities=18%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHHHH---HcCCchHHHHHHHHhcCCcccHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVREEL---ASSGSLSQQLSEIVNQGKLVSDEIIFNLL  122 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~~~---~~~~~~~~~i~~~l~~g~~~~~~~~~~~l  122 (287)
                      ..++.+|+|+|++||||||+++.|+..+   +..  +++.|.+.+...   ..+...+.   .++. + .+..+.+...+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~-~-~~d~~~l~~~v   93 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY-L-QWDVEWLTHQL   93 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH-T-SSCHHHHHHHT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc-c-ccCHHHHHHHH
Confidence            3467899999999999999999999876   443  344454432211   11111111   1110 1 11122222221


Q ss_pred             HHHHHh--------------------cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          123 SKRLEA--------------------GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       123 ~~~l~~--------------------~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ...+..                    .....+..+|+||.......   +.  ..+|.+||+++|.++.++|+..|.
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~--~~~d~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A           94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR--PFFDFVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG--GGCSEEEEECCC------------
T ss_pred             HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH--hhcCEEEEEeCCHHHHHHHHhcCC
Confidence            111100                    00111356889985432111   11  126899999999999999999884

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.60  E-value=3.2e-07  Score=80.77  Aligned_cols=165  Identities=13%  Similarity=0.075  Sum_probs=93.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      ..+++|+|.|..||||||+.++|.+.++-.   ++.+.          .+.+..+.      ..        .+...+..
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~~--------yl~R~~~~  139 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------QW--------YFQRYVAT  139 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------SC--------TTHHHHTT
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------ch--------HHHHHHHh
Confidence            468999999999999999999999998543   34331          12222211      11        11223333


Q ss_pred             cccCCCccEEEeCCC------------CCHH-------HHHHHH----HhcCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080          129 GQAGGESGFILDGFP------------RTVK-------QAEILE----EVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCG  185 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p------------~~~~-------~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g  185 (287)
                      .... +..+|+|.+-            .+..       +...++    ..+.|++.|||+++.++..+|+..|..+|.  
T Consensus       140 LP~~-G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~--  216 (304)
T 3czq_A          140 FPTA-GEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPL--  216 (304)
T ss_dssp             CCCT-TCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTT--
T ss_pred             cccC-CeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcc--
Confidence            3333 5667787421            1221       122221    123588999999999999999987754331  


Q ss_pred             CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHH--HHHHHHHhhchHHHHHHH-hcCcEEEEeCCCC
Q 023080          186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK--ERLRVYNEKSQPVEEFYR-NRGKLLEFDLPGG  262 (287)
Q Consensus       186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~--~rl~~y~~~~~~~~~~y~-~~~~~~~id~~~~  262 (287)
                      ..+..                                   +...++  +.+..|.+....+...-. ....+++||++..
T Consensus       217 k~Wk~-----------------------------------s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk  261 (304)
T 3czq_A          217 KIWKL-----------------------------------SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDK  261 (304)
T ss_dssp             TGGGC-----------------------------------CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred             cccCC-----------------------------------CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCc
Confidence            01111                                   112222  233445554444444322 2346999999863


Q ss_pred             c---ccHHHHHHHHhccch
Q 023080          263 I---PESWPKLLEALNLDE  278 (287)
Q Consensus       263 ~---eev~~~I~~~l~~~~  278 (287)
                      .   -.+.+.|+..|....
T Consensus       262 ~~arl~v~~~Il~~l~~~~  280 (304)
T 3czq_A          262 RRSRINVIRHMLTKLDYDG  280 (304)
T ss_dssp             HHHHHHHHHHHHHHCCCTT
T ss_pred             chHHHHHHHHHHHHHhhcc
Confidence            3   566677777776554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.49  E-value=2.2e-07  Score=88.86  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC------CCeeehhHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG------VPHIATGDLV   89 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg------~~~i~~d~ll   89 (287)
                      .++.+|+|+|++||||||+++.|+..++      +.+++.|++.
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~  410 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR  410 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence            3678899999999999999999999984      3357776554

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.48  E-value=1.1e-07  Score=85.11  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      ++..|+|+||+||||||++..||++++..+||+|..
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            446899999999999999999999999999998776

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.47  E-value=2.3e-06  Score=76.53  Aligned_cols=28  Identities=21%  Similarity=0.143  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .+.++|+|.|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3568999999999999999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.46  E-value=5.1e-07  Score=75.30  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGD   87 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~   87 (287)
                      .++.+|.|.||+||||||+++.|+..+.     ...++.|.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            4678999999999999999999999875     45566654

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.44  E-value=7.4e-06  Score=74.28  Aligned_cols=29  Identities=21%  Similarity=0.122  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +.++++|+|.|+.||||||+++.|++.++
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            44778999999999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.43  E-value=7.5e-07  Score=79.06  Aligned_cols=38  Identities=29%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDL   88 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~l   88 (287)
                      ..++.+|.|+|++||||||+++.|+..++       +.++++|..
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            35778999999999999999999999876       456666654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.42  E-value=1.4e-07  Score=84.14  Aligned_cols=38  Identities=26%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDL   88 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~l   88 (287)
                      ..+|.+|.|.||+||||||+++.|+..++       +.+++.|..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            45788999999999999999999998875       345777664

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.42  E-value=1.9e-06  Score=77.33  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHH-HHHHHHhCCC
Q 023080           52 DRNVQWVFLGCPGVGKGTYA-SRLSKFLGVP   81 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla-~~La~~lg~~   81 (287)
                      .++++|+|.|+.||||||++ +.|++.++..
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~   40 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITP   40 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            36689999999999999999 9999988643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.42  E-value=7.8e-07  Score=72.50  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++..++|+||+||||||+++.|+..+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.40  E-value=2.3e-06  Score=72.20  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +++.+++|+||+||||||+.+.|+..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4667899999999999999999998765

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.38  E-value=1.6e-06  Score=71.99  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .++..|+|+||+||||||+++.|.+.+.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3666899999999999999999999875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.27  E-value=1.1e-05  Score=66.69  Aligned_cols=27  Identities=26%  Similarity=0.234  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++..++|+||+||||||+.+.|...+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            345789999999999999999998763

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.22  E-value=3.2e-06  Score=79.56  Aligned_cols=106  Identities=15%  Similarity=0.032  Sum_probs=59.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      ..+++|+|.|..||||+|+.++|.+.++-.   ++.+..          +......      ..        .+.....+
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E~~------~~--------yl~R~~~~   96 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEELE------RP--------PQWRFWRR   96 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHHHT------SC--------TTHHHHHH
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhcc------CC--------hhhhHHHh
Confidence            578999999999999999999999998543   333311          1111100      01        12223333


Q ss_pred             cccCCCccEEEeCC------------CCCHH-------HHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccc
Q 023080          129 GQAGGESGFILDGF------------PRTVK-------QAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       129 ~~~~~~~g~Ildg~------------p~~~~-------~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                      .... +..+|+|.+            ..+..       +...++.    .+.+++.|||+++.++..+|+..|..+|
T Consensus        97 lP~~-G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p  172 (500)
T 3czp_A           97 LPPK-GRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP  172 (500)
T ss_dssp             CCCT-TCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred             CCCC-CeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence            4333 455666632            11211       2222222    2347899999999999999999986554

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.14  E-value=9.5e-07  Score=78.73  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      +..|+|+||+||||||++..|+++++..++++|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            45899999999999999999999999999998765

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.12  E-value=3.1e-06  Score=79.67  Aligned_cols=106  Identities=17%  Similarity=0.098  Sum_probs=66.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      ..+++|+|.|..||||+|+.++|.+.++   +.++.+..          +.....      +.        ..+...+.+
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~------~~--------~yl~R~~~~  353 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER------AQ--------PYLWRFWRH  353 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH------TS--------CTTHHHHTT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh------cc--------hHHHHHHHh
Confidence            4889999999999999999999999884   44444311          111111      11        112234444


Q ss_pred             cccCCCccEEEeCCC------------CCHH-------HHHHHH----HhcCccEEEEEecCHHHHHHHHhCCCccc
Q 023080          129 GQAGGESGFILDGFP------------RTVK-------QAEILE----EVMDIDLVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p------------~~~~-------~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                      .... +..+|+|.+-            .+..       +...++    ..+.+.+.|||+++.++..+|+..|..+|
T Consensus       354 lP~~-G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p  429 (500)
T 3czp_A          354 IPAR-RQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTP  429 (500)
T ss_dssp             CCCT-TCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred             CCCC-CeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence            4444 5667888421            1222       112222    22348899999999999999999886554

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.03  E-value=0.0002  Score=57.57  Aligned_cols=107  Identities=20%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH----HHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI----IFNLLSKRLEA  128 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~----~~~~l~~~l~~  128 (287)
                      ++-+++|+|++||||||+++.+.  .+...++. +.++..+....            +.......    ........+..
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~-d~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~   72 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISS-DFCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQL   72 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEH-HHHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEcc-HHHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHhC
Confidence            56689999999999999999865  35566666 44444333221            11111111    11111222222


Q ss_pred             cccCCCccEEEeCCCCCHHH---HHHHHHhc-CccEEEEEecCHHHHHHHHhCCC
Q 023080          129 GQAGGESGFILDGFPRTVKQ---AEILEEVM-DIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p~~~~~---~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                           +...++|........   .-.+.... ..-.+++||-|...+-.|...|.
T Consensus        73 -----g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           73 -----GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             -----TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred             -----CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence                 245777765444322   22222222 22347899999999988888773

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.92  E-value=5.4e-06  Score=74.30  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      .+|+|+||+||||||+|..|++.++..+|++|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            5799999999999999999999999999998876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.90  E-value=7.1e-06  Score=72.50  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      .|..|+|+||+||||||++..|+++++..+|+.|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            45688999999999999999999999988888755

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.90  E-value=2.7e-05  Score=68.58  Aligned_cols=161  Identities=12%  Similarity=0.058  Sum_probs=89.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHHHHHHHHc---CC----c-hHHHHHHHHhcCCcccHH-------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG-VPHIATGDLVREELAS---SG----S-LSQQLSEIVNQGKLVSDE-------  116 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~llr~~~~~---~~----~-~~~~i~~~l~~g~~~~~~-------  116 (287)
                      .+..|+|+||   ||+|+.+.|.+.+. ...+++..+.|..-..   +.    . ....+...+.+|.++...       
T Consensus       104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y  180 (295)
T 1kjw_A          104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY  180 (295)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence            3445888998   79999999998764 2222222222221000   00    1 345666777777765321       


Q ss_pred             -HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080          117 -IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN  194 (287)
Q Consensus       117 -~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~  194 (287)
                       +-...+.+.+..     ++.+|+|.-+....+   +... ..| ++|||..|.-..++++.+|.               
T Consensus       181 Gt~~~~V~~~~~~-----G~~vildid~~g~~~---l~~~~~~p-i~IfI~pps~~~L~~L~~R~---------------  236 (295)
T 1kjw_A          181 GTSVQSVREVAEQ-----GKHCILDVSANAVRR---LQAAHLHP-IAIFIRPRSLENVLEINKRI---------------  236 (295)
T ss_dssp             EEEHHHHHHHHHT-----TCEEEECCCTTHHHH---HHHTTCCC-EEEEECCSSHHHHHHHCTTS---------------
T ss_pred             eeeHHHHHHHHhc-----CCeEEEEeCHHHHHH---HHhcccCC-eEEEEECCCHHHHHHHHhcC---------------
Confidence             112233444444     468999976554433   3222 224 78899877444445565552               


Q ss_pred             ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                                     +++.+++|++...+.    ...+......+ |.++ +.++.+++|..+|
T Consensus       237 -------------------------------t~~~i~~rl~~a~~~----e~~~~~~fd~v-ivNd-~le~a~~~l~~ii  279 (295)
T 1kjw_A          237 -------------------------------TEEQARKAFDRATKL----EQEFTECFSAI-VEGD-SFEEIYHKVKRVI  279 (295)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHH----HHHHGGGCSEE-ECCS-SHHHHHHHHHHHH
T ss_pred             -------------------------------CHHHHHHHHHHHHHH----HHhccccCeEE-EECc-CHHHHHHHHHHHH
Confidence                                           235577788776431    11122222233 4444 8999999999998


Q ss_pred             ccc
Q 023080          275 NLD  277 (287)
Q Consensus       275 ~~~  277 (287)
                      ...
T Consensus       280 ~~~  282 (295)
T 1kjw_A          280 EDL  282 (295)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            754

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.88  E-value=1.1e-05  Score=69.11  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA   94 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~   94 (287)
                      ++|.|+|++||||||+++.|++++|+++++.++.+++.+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            5799999999999999999999999999999988877554

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.85  E-value=1.3e-05  Score=70.54  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ...|..++|.||||+|||++|+.||+.+|.+++.+
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v   67 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM   67 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            34566788899999999999999999998876544

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.85  E-value=8.3e-06  Score=72.21  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL   88 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l   88 (287)
                      +..|+|+||+||||||++..|+++++..+|+.|..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            45789999999999999999999999888887654

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=97.84  E-value=6e-05  Score=65.50  Aligned_cols=109  Identities=12%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      ..+++|+|.|..||||+++.++|.+.++-.++.+-.+       ..+..              .+.....+...+.....
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~-------~~Pt~--------------eE~~~~ylwR~~~~lP~  131 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF-------KAPTD--------------EEKSHDFLWRIEKQVPA  131 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC-------CSCCH--------------HHHTSCTTHHHHTTCCC
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC-------CCCCh--------------hhhcCCHHHHHHHhCCC
Confidence            4789999999999999999999999985443332000       00111              11111112223344444


Q ss_pred             CCCccEEEeCC------------CCCH-------HHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080          132 GGESGFILDGF------------PRTV-------KQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCS  182 (287)
Q Consensus       132 ~~~~g~Ildg~------------p~~~-------~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~  182 (287)
                      . +...|+|+.            ..+.       .+...++..    +..-+-+||+++.++..+|+..|.-+|
T Consensus       132 ~-G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP  204 (289)
T 3rhf_A          132 A-GMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDP  204 (289)
T ss_dssp             T-TCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCG
T ss_pred             C-CeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence            4 566777741            0111       112222321    113355899999999999999986554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.74  E-value=7.3e-06  Score=73.79  Aligned_cols=30  Identities=30%  Similarity=0.487  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      ..+.|+|+|+|||||||+++.|++.+++.+
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            345789999999999999999999998877

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.71  E-value=1.9e-05  Score=72.26  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      +.+|+|+||+||||||++..|+++++..+|++|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            4578999999999999999999999988888765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.67  E-value=1.7e-05  Score=74.98  Aligned_cols=36  Identities=8%  Similarity=0.001  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-------CeeehhH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-------PHIATGD   87 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-------~~i~~d~   87 (287)
                      ..++.|+|+|.+||||||+++.|+++|+.       .+++.|+
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            36689999999999999999999999986       4677655

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.65  E-value=3.3e-05  Score=71.52  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +.|.-|+|.||||||||++|+.+|..+|++++.+
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            3456799999999999999999999999887654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.64  E-value=3.3e-05  Score=71.40  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..|.-|+|.||||||||++|+.+|..+|++++.+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            3455699999999999999999999999987755

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.63  E-value=3.7e-05  Score=71.24  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+|.-|+|.||||||||++|+.+|..+|++++.+
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3556799999999999999999999999987654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.61  E-value=3.5e-05  Score=70.55  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +|.-|+|.||||+|||++|+.+|..++++++.+
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            445689999999999999999999999988754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.60  E-value=5.2e-05  Score=64.90  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +.-++|.||||+||||+++.|+..++.+++.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34588999999999999999999998776654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.58  E-value=5.8e-05  Score=64.44  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..|+|.||||+||||+++.+++.++.+++.+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            445688999999999999999999998877654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.56  E-value=5.1e-05  Score=66.64  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCee-ehhHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHI-ATGDLV   89 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i-~~d~ll   89 (287)
                      ..++.+|.|.|++||||||+++.|+..++       ...+ +.|+++
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            45788999999999999999999999875       3455 777654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.53  E-value=9.1e-05  Score=59.78  Aligned_cols=39  Identities=33%  Similarity=0.439  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CCeeehhHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL----G--VPHIATGDLVRE   91 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l----g--~~~i~~d~llr~   91 (287)
                      ++..++|.||+||||||+++.++..+    |  +.+++..+++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            35678999999999999999998876    4  345666555543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.52  E-value=6e-05  Score=66.34  Aligned_cols=39  Identities=23%  Similarity=0.318  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVRE   91 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~   91 (287)
                      .+..|+|.||||+||||+++.|+..++..++.+  .++...
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~   88 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   88 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence            455689999999999999999999998776654  355443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=5.5e-05  Score=70.27  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+|.-|+|.||||+|||++|+.+|..++++++.+
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            3556799999999999999999999999987654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=6.2e-05  Score=69.30  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..|.-|+|.||||+|||++|+.+|..++++++.+
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            3456799999999999999999999999987754

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.51  E-value=6.2e-05  Score=69.86  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      .+..|+|+||||+||||+++.||+.++.+++.++
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            4456999999999999999999999999887664

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.50  E-value=7.4e-05  Score=64.77  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..++|.||||+||||+++.++..++.+++.+
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            445689999999999999999999998877654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.49  E-value=7.6e-05  Score=65.17  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++..++|.||||+||||+++.++..++.+++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i   85 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI   85 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            355789999999999999999999998776543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.49  E-value=7e-05  Score=67.62  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            345688999999999999999999999888765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.48  E-value=0.0001  Score=63.68  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..+..++|.||||+|||++|+.+++.++.+++.+
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3556789999999999999999999999887654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.46  E-value=7e-05  Score=60.91  Aligned_cols=27  Identities=33%  Similarity=0.583  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      ++++|+||+||||||+.+.|+..+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            468999999999999999999988743

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.45  E-value=0.00019  Score=71.33  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+|.-|+|.||||+|||++++.+|..+|.+++.+
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            4667799999999999999999999999887655

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.44  E-value=0.00072  Score=66.66  Aligned_cols=162  Identities=12%  Similarity=0.036  Sum_probs=91.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHHHHHHHH---cCC----c-hHHHHHHHHhcCCcccHH-------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG-VPHIATGDLVREELA---SSG----S-LSQQLSEIVNQGKLVSDE-------  116 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~llr~~~~---~~~----~-~~~~i~~~l~~g~~~~~~-------  116 (287)
                      .+..|+|+||   ||+|+.++|.+.+. ...+++....|..-.   .+.    . ....+...+.+|.++...       
T Consensus       530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y  606 (721)
T 2xkx_A          530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY  606 (721)
T ss_pred             CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence            3456788999   49999999998874 233444344443110   010    0 345666777777765421       


Q ss_pred             -HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080          117 -IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN  194 (287)
Q Consensus       117 -~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~  194 (287)
                       +-...+.+.+..     ++.+|||.-+...   ..+.... .| ++|||..|....++++.+|.               
T Consensus       607 Gt~~~~v~~~~~~-----g~~~ildi~~~~~---~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~---------------  662 (721)
T 2xkx_A          607 GTSVQSVREVAEQ-----GKHCILDVSANAV---RRLQAAHLHP-IAIFIRPRSLENVLEINKRI---------------  662 (721)
T ss_pred             eeeHHHHHHHHHC-----CCcEEEeCCHHHH---HHHHhcccCC-EEEEEeCCcHHHHHHHhccC---------------
Confidence             123334444544     4789999744332   2333211 24 78899877655555566553               


Q ss_pred             ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                                     +++.+++|++...+...    .|.....++ |.++ +.++.+++|..+|
T Consensus       663 -------------------------------t~~~~~~rl~~a~~~e~----~~~~~fd~v-i~Nd-~l~~a~~~l~~~i  705 (721)
T 2xkx_A          663 -------------------------------TEEQARKAFDRATKLEQ----EFTECFSAI-VEGD-SFEEIYHKVKRVI  705 (721)
T ss_pred             -------------------------------CHHHHHHHHHHHHHHHH----hccccCcEE-EECc-CHHHHHHHHHHHH
Confidence                                           12457777777643211    122212233 4444 8999999999999


Q ss_pred             ccch
Q 023080          275 NLDE  278 (287)
Q Consensus       275 ~~~~  278 (287)
                      ....
T Consensus       706 ~~~~  709 (721)
T 2xkx_A          706 EDLS  709 (721)
T ss_pred             Hhcc
Confidence            7543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.43  E-value=0.0001  Score=65.44  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++..|+|.||||+|||++++.+++.++.+++.+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            455799999999999999999999998877654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.39  E-value=9.5e-05  Score=64.31  Aligned_cols=29  Identities=28%  Similarity=0.429  Sum_probs=25.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++|.|||||||||+++.|+..++...+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i   75 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISV   75 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence            89999999999999999999988655543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.37  E-value=0.00012  Score=63.95  Aligned_cols=32  Identities=34%  Similarity=0.538  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +..++|.||||+|||++++.+++.++.+++.+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i   81 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            44688999999999999999999998776543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.37  E-value=9.6e-05  Score=61.11  Aligned_cols=34  Identities=26%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD   87 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~   87 (287)
                      .+..|+|+||+||||||+|..|+++.+ .+++.|.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            456799999999999999999999876 7777643

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.36  E-value=0.00013  Score=66.18  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +..|+|.||||+||||+|+.|++.++.+++.+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~  103 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS  103 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            44588999999999999999999998877654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.33  E-value=0.00016  Score=64.38  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIA   84 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~   84 (287)
                      ++.-|+|.||||+|||++++.++..+ +..++.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~   76 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS   76 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence            44578899999999999999999998 665543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.32  E-value=0.00035  Score=69.42  Aligned_cols=118  Identities=17%  Similarity=0.237  Sum_probs=61.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCCchHHHHHHHHhcC---C----------------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSGSLSQQLSEIVNQG---K----------------  111 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~~~~~~i~~~l~~g---~----------------  111 (287)
                      ++.-|+|.||||+|||.+|+.+|..++.+++++  .+++..   .-+...+.++++|..-   .                
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~---~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R  586 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM---WFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR  586 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT---TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc---ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhcc
Confidence            455689999999999999999999999988765  333322   1112233333333210   0                


Q ss_pred             --------cccHHHHHHHHHHHHHhcccCCCccEEEeC---CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          112 --------LVSDEIIFNLLSKRLEAGQAGGESGFILDG---FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       112 --------~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg---~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                              ...+. +...+...+......  .++++=|   .|...+.+  +-+.+.+|..|++..|.......+.+.
T Consensus       587 ~~~~~~~~~~~~r-v~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~A--llRpgRfd~~i~v~lPd~~~R~~il~~  659 (806)
T 3cf2_A          587 GGNIGDGGGAADR-VINQILTEMDGMSTK--KNVFIIGATNRPDIIDPA--ILRPGRLDQLIYIPLPDEKSRVAILKA  659 (806)
T ss_dssp             -----------CH-HHHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHH--HHSTTTSCCEEEC-----CHHHHTTTT
T ss_pred             CCCCCCCchHHHH-HHHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHh--HcCCCcceEEEEECCcCHHHHHHHHHH
Confidence                    00111 222233334333222  3444433   45555432  334456788999999987776666554

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.32  E-value=0.00018  Score=57.56  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..++|.|++|+||||+++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999986

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.29  E-value=0.00016  Score=65.17  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+.-|+|.||||+|||++|+.++..++.+++.+
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            334588999999999999999999999877654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.28  E-value=0.00015  Score=58.00  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +..++|.|++|+||||+++.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4467899999999999999999987

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.28  E-value=0.00017  Score=63.20  Aligned_cols=27  Identities=33%  Similarity=0.583  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+..++|.||||+|||++++.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345578999999999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.28  E-value=0.00017  Score=61.55  Aligned_cols=29  Identities=34%  Similarity=0.528  Sum_probs=25.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++|+|||||||||+++.|+..++...+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            89999999999999999999887665544

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.27  E-value=7.5e-05  Score=64.20  Aligned_cols=29  Identities=28%  Similarity=0.434  Sum_probs=25.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++|.||||+||||+++.|+..++.+++.+
T Consensus        47 vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            78999999999999999999998776654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.26  E-value=0.00021  Score=63.84  Aligned_cols=29  Identities=28%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      +..++|.||||+||||+++.|+..++..+
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            34688999999999999999999997654

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.23  E-value=0.0017  Score=57.13  Aligned_cols=94  Identities=19%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPH-IATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~-i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      ..+|  |||+||   ||+|+.++|.+.+.-.+ +++.            ....    ..+|++++.+.+...+    .. 
T Consensus       144 ~~RP--vVl~GP---~k~~l~~~L~~~~P~~F~~~v~------------~~r~----i~~~~fis~~~V~~vl----~~-  197 (308)
T 3kfv_A          144 FKRP--VVILGP---VADIAMQKLTAEMPDQFEIAET------------VSRT----DSPSKIIKLDTVRVIA----EK-  197 (308)
T ss_dssp             SCCC--EEEEST---THHHHHHHHHHHCTTTEEECCC------------C------------CCCHHHHHHHH----HT-
T ss_pred             CCCe--EEEeCc---cHHHHHHHHHHhCccccccccc------------cccc----ccCCCeecHHHHHHHH----HC-
Confidence            3455  788899   79999999988874332 2221            0011    3566777555444443    33 


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCH-HHHHHHHhCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCE-DVLLEKCLGR  178 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~-e~l~~Rl~~R  178 (287)
                          ++.+|||--+....   .+......-++|||..|. +++.+ +.+|
T Consensus       198 ----Gk~~ILDId~QGa~---~lk~~~~~pi~IFI~PPS~eeL~~-rr~R  239 (308)
T 3kfv_A          198 ----DKHALLDVTPSAIE---RLNYVQYYPIVVFFIPESRPALKA-LRQW  239 (308)
T ss_dssp             ----TCEEEECCCHHHHH---HHHHTTCCCEEEEEEESCHHHHHH-HHHH
T ss_pred             ----CCcEEEEECHHHHH---HHHhcCCCCEEEEEeCCCHHHHHH-HHhc
Confidence                57899985544433   333322222677777655 45554 4444

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.23  E-value=0.00023  Score=64.21  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..|+|.||||+||||+++.|++.++.+++.+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i  148 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI  148 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence            455789999999999999999999998876543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.21  E-value=0.00034  Score=57.35  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVRE   91 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~   91 (287)
                      +..++|.|++|+||||+++.++..+   +..  +++..+++..
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~   96 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE   96 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence            3578899999999999999999877   333  3566555443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.21  E-value=0.00026  Score=62.84  Aligned_cols=32  Identities=28%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +..++|.|+||+||||+++.+++.++.+++.+
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            34588999999999999999999998877654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.20  E-value=0.00024  Score=66.23  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~   85 (287)
                      ++..++|.||||+|||++|+.+|+.++  ++++.+
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            445689999999999999999999998  666654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.18  E-value=0.00027  Score=62.65  Aligned_cols=28  Identities=29%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..++.+|.|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4577899999999999999999999876

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.16  E-value=0.00022  Score=59.72  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+++|+||+||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45678999999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.14  E-value=0.00033  Score=63.74  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      +++..|+|.||+||||||+++.|+..++..++.
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            355689999999999999999999988776655

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.14  E-value=0.00028  Score=61.14  Aligned_cols=29  Identities=34%  Similarity=0.528  Sum_probs=25.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++|+|||||||||+++.|+..++...+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            89999999999999999999887666544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.12  E-value=0.0003  Score=58.22  Aligned_cols=28  Identities=25%  Similarity=0.185  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .++-+++|+||+||||||+.+.|+..+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3566899999999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.11  E-value=0.00038  Score=65.25  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .-|+|.||||+||||+++.++..++.+++.+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            3488999999999999999999999887654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.11  E-value=0.0012  Score=57.95  Aligned_cols=158  Identities=14%  Similarity=0.035  Sum_probs=84.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CC-----chHHHHHHHHhcCCcccHHH--------HH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SG-----SLSQQLSEIVNQGKLVSDEI--------IF  119 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~-----~~~~~i~~~l~~g~~~~~~~--------~~  119 (287)
                      |||+||   ||+|+.++|.+.+.- ..+++....|..-..   +.     .....+...+.+|.++....        ..
T Consensus       103 vVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~  179 (292)
T 3tvt_A          103 VIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSV  179 (292)
T ss_dssp             EEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeEEeh
Confidence            777888   599999999988753 223332222220000   00     02245666666666543211        12


Q ss_pred             HHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCH-HHHHHHHhCCCccccCCCccccccccccCC
Q 023080          120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCE-DVLLEKCLGRRMCSQCGGNFNVANINVKGG  198 (287)
Q Consensus       120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~-e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~  198 (287)
                      ..+.+.+..     ++.+|||--+....   .+......-++|||..|. +++.+|+.+|                    
T Consensus       180 ~~V~~~~~~-----gk~viLdid~qg~~---~lk~~~~~pi~IFI~PpS~e~L~~r~~~r--------------------  231 (292)
T 3tvt_A          180 ASVREVAEK-----GKHCILDVSGNAIK---RLQVAQLYPVAVFIKPKSVDSVMEMNRRM--------------------  231 (292)
T ss_dssp             HHHHHHHHH-----TCEEEECCCTHHHH---HHHHTTCCCEEEEECCSCHHHHHHTCTTS--------------------
T ss_pred             HHHHHHHHc-----CCcEEEeccchhhh---hcccccccceEEEEECCCHHHHHHHHhCC--------------------
Confidence            344444554     46889986554433   333333333678887754 4554443332                    


Q ss_pred             CCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080          199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       199 ~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~  278 (287)
                                              .++..+.+..|+.....       .|.+....+.++  .+.++.+.+|..+|..+.
T Consensus       232 ------------------------~~e~~~~~~~r~~k~e~-------e~~~~fD~vIvN--ddle~a~~~l~~iI~~e~  278 (292)
T 3tvt_A          232 ------------------------TEEQAKKTYERAIKMEQ-------EFGEYFTGVVQG--DTIEEIYSKVKSMIWSQS  278 (292)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHH-------HHTTTCSEEECC--SSHHHHHHHHHHHHHHHT
T ss_pred             ------------------------CchhHHHHHHHHHHHHH-------hhhhhCCEEEEC--cCHHHHHHHHHHHHHHhh
Confidence                                    24445555555443322       222222233333  479999999999998654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.11  E-value=0.00036  Score=63.53  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..|+|.|+||+|||++++.++..++.+++.+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            345789999999999999999999999887654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.11  E-value=0.00028  Score=58.65  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ...++|.||||+||||+|..|++.++..+++
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            3458999999999999999999988655443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.10  E-value=0.00033  Score=58.51  Aligned_cols=27  Identities=7%  Similarity=-0.073  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .+..++|.||||+||||+++.+++.++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            445688999999999999999998764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.06  E-value=0.00039  Score=56.04  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+|+|.|++||||||++..|+..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999999875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.06  E-value=0.00039  Score=65.83  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..++|.||||+||||+++.|++.+|+.++.+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            345789999999999999999999999887654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.03  E-value=0.0004  Score=64.53  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCee--ehhHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHI--ATGDLVR   90 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i--~~d~llr   90 (287)
                      ++.-|+|.||||+|||++++.|+..+ +.+++  +..+++.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~  206 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS  206 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence            34568999999999999999999998 66554  4445443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.01  E-value=0.00041  Score=54.05  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .|+|.|+||+|||++|+.|+...
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC
Confidence            38899999999999999999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.98  E-value=0.00057  Score=60.32  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+|+|+||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999876

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.96  E-value=0.00059  Score=60.34  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLV   89 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~ll   89 (287)
                      .+..++|.||||+||||+++.++..+   +..  +++..++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            34458899999999999999999987   554  45555543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.96  E-value=0.00063  Score=59.44  Aligned_cols=25  Identities=40%  Similarity=0.554  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...++|.||||+||||+++.|++.+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3478999999999999999999987

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.95  E-value=0.00042  Score=54.51  Aligned_cols=26  Identities=15%  Similarity=0.074  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +...++|.|++||||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45578899999999999999999876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.91  E-value=0.00073  Score=53.74  Aligned_cols=26  Identities=19%  Similarity=0.232  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.||.||||||+.+.|+..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            55689999999999999999999876

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.90  E-value=0.0007  Score=62.99  Aligned_cols=31  Identities=23%  Similarity=0.383  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..++|.||||+||||+++.|++.++..++.+
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            4688999999999999999999998877654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.89  E-value=0.00063  Score=56.36  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            346889999999999999999998753

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.88  E-value=0.00068  Score=64.62  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++..++|.||||+||||+++.|+..++.+++.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            566899999999999999999999997765443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.86  E-value=0.00063  Score=59.84  Aligned_cols=30  Identities=33%  Similarity=0.499  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ..++|.|+||+||||+++.+++.++.+++.
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~   68 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRV   68 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            458899999999999999999999877653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.85  E-value=0.00081  Score=54.39  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...++|+|++||||||+++.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4578999999999999999998764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.84  E-value=0.00067  Score=55.52  Aligned_cols=22  Identities=41%  Similarity=0.582  Sum_probs=20.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++|.|++|+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.83  E-value=0.00078  Score=63.38  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+.-++|.|+||+|||++++.|+..++.+++.+
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            445689999999999999999999998877654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.83  E-value=0.00084  Score=59.87  Aligned_cols=27  Identities=30%  Similarity=0.578  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.83  E-value=0.0005  Score=55.94  Aligned_cols=25  Identities=20%  Similarity=0.064  Sum_probs=22.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      |+|+|++||||||+|..|+.. +.++
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            789999999999999999987 6543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.82  E-value=0.00092  Score=59.92  Aligned_cols=27  Identities=30%  Similarity=0.447  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      +..++|.||||+|||++++.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            457899999999999999999999874

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.82  E-value=0.00053  Score=60.79  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      .++|.||||+|||++++.|++.++..++.
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~~~~   76 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLDFHR   76 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            48899999999999999999999876543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.80  E-value=0.00075  Score=56.10  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-+++|+||+||||||+++.|+..+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999998743

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.78  E-value=0.00096  Score=62.87  Aligned_cols=30  Identities=33%  Similarity=0.500  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      -++|.||||+||||+++.|+..++.+++.+
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i   95 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITA   95 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            489999999999999999999988776544

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.78  E-value=0.00025  Score=55.15  Aligned_cols=27  Identities=22%  Similarity=0.124  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      .|+|.|+||+|||++|+.++...+ +++
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~   55 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGT-PWV   55 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred             cEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence            388999999999999999988766 444

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.0006  Score=60.52  Aligned_cols=27  Identities=11%  Similarity=0.035  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|..++|.||||+|||++++.+++.+
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            366789999999999999999999988

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.77  E-value=0.001  Score=59.87  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..++|.||||+||||+++.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999976

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.75  E-value=0.00081  Score=55.11  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58899999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.75  E-value=0.001  Score=58.67  Aligned_cols=27  Identities=26%  Similarity=0.474  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++||||||++..||..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            466789999999999999999999876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.74  E-value=0.00097  Score=58.84  Aligned_cols=27  Identities=33%  Similarity=0.628  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++-+++|+||+||||||+++.|+.-+.
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~  151 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFLG  151 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence            556899999999999999999998873

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.74  E-value=0.0011  Score=57.08  Aligned_cols=27  Identities=19%  Similarity=0.293  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+.-+++|+||+||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            356689999999999999999998765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.74  E-value=0.0011  Score=61.94  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh----------CCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL----------GVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l----------g~~~i~~   85 (287)
                      +..++|+|+||+|||++++.|+..+          +..++.+
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l  242 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL  242 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence            3467899999999999999999997          6666655

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.70  E-value=0.00084  Score=60.17  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..++|.||||+||||+++.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45568899999999999999999887

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.70  E-value=0.0012  Score=58.20  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++-+++|+|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367789999999999999999999876

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.70  E-value=0.001  Score=59.49  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh------CCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL------GVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l------g~~~i~~   85 (287)
                      .+..++|.|++|+||||+++.+++.+      +..++.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i   82 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI   82 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            45578899999999999999999977      6655443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.69  E-value=0.0012  Score=54.85  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|++||||||+++.|+..+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.67  E-value=0.00091  Score=56.70  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            55689999999999999999997544

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.66  E-value=0.0011  Score=58.54  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..+++.||||+||||+++.|++.++..++.+
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            344577788899999999999999998777654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.66  E-value=0.0013  Score=53.61  Aligned_cols=25  Identities=20%  Similarity=0.016  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.+++++|+|||||||++-.++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999997777665

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.66  E-value=0.0011  Score=54.59  Aligned_cols=33  Identities=27%  Similarity=0.200  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~   85 (287)
                      ++-+++|.|++||||||++..|+...+  +.+++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            556899999999999999999987433  334444

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.58  E-value=0.0017  Score=57.37  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC----CC--eeehhHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLG----VP--HIATGDLVRE   91 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg----~~--~i~~d~llr~   91 (287)
                      +..++|.||||+|||+++..|+..+.    ..  +++..+++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            45788999999999999999997553    43  3566666554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.58  E-value=0.0016  Score=60.27  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|.+|+|+|++||||||++..|+..+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999776

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.57  E-value=0.0014  Score=54.10  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      -+|+++|+|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999999886433

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.55  E-value=0.0011  Score=55.67  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45578999999999999999997543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.55  E-value=0.0017  Score=58.29  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++|.||+|+||||+++.++..+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            78899999999999999999988

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.54  E-value=0.0017  Score=57.01  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++||||||++..|+..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.54  E-value=0.00072  Score=54.51  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+.|+|++||||||+++.|...|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999876

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=96.53  E-value=0.0079  Score=56.03  Aligned_cols=100  Identities=12%  Similarity=0.009  Sum_probs=50.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      .+..|||+||+|+|   +.++|.+.+.-.+.+..  .|  ...+...|.       ...+.+.    ..+.+.+..    
T Consensus       223 ~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR--pR~gE~dG~-------~Y~FTs~----~~V~~vl~~----  280 (468)
T 3shw_A          223 FLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE--PRDAGTDQR-------SSGIIRL----HTIKQIIDQ----  280 (468)
T ss_dssp             SCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB--C-----------------CBCCH----HHHHHHHTT----
T ss_pred             CCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC--CCCcccccc-------cCCcccH----HHHHHHHHC----
Confidence            45568899999999   88888887754343331  12  111111111       1122222    333333443    


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                       ++.+|||--+...   +.+......-++|||..|.-..++++.+|
T Consensus       281 -Gk~~iLdId~qg~---~~l~~~~~~p~~IFI~PPS~e~L~~~~~r  322 (468)
T 3shw_A          281 -DKHALLDVTPNAV---DRLNYAQWYPIVVFLNPDSKQGVKTMRMR  322 (468)
T ss_dssp             -TCEEEECCCHHHH---HHHHHTTCCCEEEEEECSCHHHHHHHHHH
T ss_pred             -CCeEEEEeCHHHH---HHHHhcCCCCEEEEEeCcCHHHHHHHHhc
Confidence             5789999644433   34443322236788887655555444333

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.53  E-value=0.0013  Score=55.90  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      -+++|+||.||||||+.+.|+--+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.53  E-value=0.0013  Score=55.80  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999997643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.52  E-value=0.0018  Score=51.19  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.+...|+|+|.+|+||||+.++|...
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            346678999999999999999999764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.52  E-value=0.0018  Score=58.42  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++-+|+|+|+.||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            367789999999999999999999876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.49  E-value=0.0022  Score=59.37  Aligned_cols=27  Identities=22%  Similarity=0.570  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|.+|+|.|++||||||++..|+..+
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999876

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.49  E-value=0.0014  Score=53.02  Aligned_cols=25  Identities=32%  Similarity=0.605  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .....|+|+|.+|+||||+.+.|..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            3557899999999999999999853

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.48  E-value=0.0016  Score=52.77  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ....|+|+|++||||||+.++|+..
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.48  E-value=0.0016  Score=55.67  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ..|+|.|+||+|||++++.|++..+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC
Confidence            3488999999999999999998764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.47  E-value=0.002  Score=63.84  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh----------CCCeeehh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL----------GVPHIATG   86 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l----------g~~~i~~d   86 (287)
                      .+..++|.|+||+||||+++.|++.+          +..++.++
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~  243 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD  243 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence            34468999999999999999999997          77777663

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.47  E-value=0.0014  Score=56.42  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.47  E-value=0.0017  Score=54.48  Aligned_cols=25  Identities=16%  Similarity=0.050  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-+++|.|++||||||++..|+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5568999999999999999999984

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.47  E-value=0.0016  Score=57.82  Aligned_cols=23  Identities=39%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++|.||||+||||+++.|++.++
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999998864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.46  E-value=0.0016  Score=55.48  Aligned_cols=26  Identities=38%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0021  Score=51.41  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++..|+|+|++|+||||+.++|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            567899999999999999999975

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.45  E-value=0.0016  Score=52.31  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .++..|+|+|.+|+||||+...|...
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            35678999999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.45  E-value=0.0016  Score=57.97  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++|.||||+||||+++.|++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            88999999999999999999863

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.45  E-value=0.0014  Score=56.95  Aligned_cols=26  Identities=35%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45689999999999999999998654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.45  E-value=0.0013  Score=54.79  Aligned_cols=25  Identities=28%  Similarity=0.126  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-+++|+||.||||||+.+.|+-.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4457899999999999999999853

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.43  E-value=0.002  Score=50.28  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.+.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            5678999999999999999999753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.43  E-value=0.0015  Score=56.40  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45689999999999999999998644

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.42  E-value=0.0016  Score=56.19  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            55688999999999999999998654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.42  E-value=0.0025  Score=63.05  Aligned_cols=30  Identities=37%  Similarity=0.566  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ..++|.||||+|||++|+.|++.++.+++.
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~  518 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKALGIELLR  518 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence            468999999999999999999999866553

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.41  E-value=0.0022  Score=60.13  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            467899999999999999999999876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.41  E-value=0.0015  Score=58.90  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      ...++|+|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5689999999999999999999987654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.40  E-value=0.0016  Score=55.56  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+--+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45589999999999999999997654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.40  E-value=0.0022  Score=55.84  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.|+|||||||+++.|+..+
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55689999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.39  E-value=0.002  Score=52.48  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...|+|+|++||||||+.++|+..
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            467999999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.39  E-value=0.0025  Score=51.30  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..+...|+|+|.+|+||||+..+|..
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            34668999999999999999988875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.39  E-value=0.0017  Score=56.21  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55688999999999999999998654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.39  E-value=0.0021  Score=55.56  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-+++|+||.||||||+.+.|+--
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5568999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.39  E-value=0.0026  Score=52.57  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +...|+|+|.+||||||+...|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.38  E-value=0.0017  Score=55.81  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55689999999999999999997654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.38  E-value=0.002  Score=55.04  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-+++|+|+.||||||+.+.|+--
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557999999999999999999863

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.38  E-value=0.0018  Score=55.77  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            55689999999999999999998654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.37  E-value=0.0018  Score=55.66  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            55689999999999999999998654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.37  E-value=0.0017  Score=55.13  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999998654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.37  E-value=0.0023  Score=59.38  Aligned_cols=35  Identities=14%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-----CCC--eeehhHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL-----GVP--HIATGDL   88 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l-----g~~--~i~~d~l   88 (287)
                      +..++|.||||+||||+++.++..+     +..  +++..++
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            4568899999999999999999876     444  4455444

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.37  E-value=0.0026  Score=51.25  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            35578999999999999999999753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.37  E-value=0.0018  Score=51.69  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=21.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++..+...|+|+|.+|+||||+.++|..
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence            3344678999999999999999999975

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.37  E-value=0.0022  Score=51.57  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc
Confidence            4567999999999999999999875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.37  E-value=0.0023  Score=49.74  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++..|+|+|++|+||||+...|...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3578999999999999999988753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.37  E-value=0.0022  Score=51.74  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..-|+|.|++|+||||+|..|.++ |...++-
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r-G~~lvaD   46 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR-GHQLVCD   46 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence            446899999999999999999884 7766654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.35  E-value=0.0016  Score=54.50  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+-.+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999997544

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.35  E-value=0.0011  Score=58.79  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++|.|+||+|||++++.|++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            88999999999999999999876

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.35  E-value=0.0022  Score=50.53  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ...|+|+|++|+||||+.++|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999974

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.35  E-value=0.0024  Score=55.85  Aligned_cols=24  Identities=46%  Similarity=0.564  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .++|.||||+||||+++.+++.++
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            489999999999999999999863

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.35  E-value=0.0024  Score=57.08  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346889999999999999999998865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.35  E-value=0.0018  Score=54.57  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+-.+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45589999999999999999998654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.35  E-value=0.003  Score=49.90  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..++..|+|+|.+|+||||+.++|..
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34677899999999999999999964

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.34  E-value=0.0032  Score=49.31  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+..+|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4668899999999999999999965

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.34  E-value=0.0023  Score=56.96  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++|.||+|+||||+++.|+..+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999965

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.33  E-value=0.0029  Score=54.58  Aligned_cols=27  Identities=15%  Similarity=0.169  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ...|+|.||||+|||+++..|+..+++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            346999999999999999999997644

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.33  E-value=0.0024  Score=51.52  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            35678999999999999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.33  E-value=0.0022  Score=57.84  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            45689999999999999999998643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.32  E-value=0.0029  Score=56.53  Aligned_cols=27  Identities=37%  Similarity=0.587  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.++.|+|+|||||||+.+.|+..+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            467789999999999999999998654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.32  E-value=0.0021  Score=50.76  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.+.|..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            557899999999999999999975

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.31  E-value=0.0024  Score=49.42  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +..|+++|.+|+||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.31  E-value=0.0023  Score=51.52  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHc
Confidence            3567899999999999999999975

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.30  E-value=0.0031  Score=52.99  Aligned_cols=27  Identities=19%  Similarity=-0.109  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..+++++|+||+||||.+-.++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            356789999999999999999888877

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.29  E-value=0.0028  Score=51.52  Aligned_cols=28  Identities=29%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+...|+|+|.+|+||||+.++|...
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3446789999999999999999999753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0029  Score=50.86  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+.+.|+|+|++|+||||+...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            46678999999999999999999764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.29  E-value=0.0021  Score=55.42  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+--+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55689999999999999999998654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.28  E-value=0.0028  Score=53.14  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-.++|.|+|||||||++..++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4557899999999999999888764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.27  E-value=0.0021  Score=54.95  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+-.+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45578999999999999999997644

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.26  E-value=0.0021  Score=55.95  Aligned_cols=26  Identities=27%  Similarity=0.606  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+-.+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55688999999999999999998654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.26  E-value=0.003  Score=57.25  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-.++|+||+||||||+.+.|+..+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            55689999999999999999998865

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.26  E-value=0.0017  Score=52.76  Aligned_cols=29  Identities=10%  Similarity=0.095  Sum_probs=21.1

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .++.+...|+|+|.+|+||||+.+.|...
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence            44456789999999999999999877553

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.26  E-value=0.0029  Score=56.83  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..+|+|+|+||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999999876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.25  E-value=0.0033  Score=52.07  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +...|+|+|.+||||||+..+|+..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.24  E-value=0.003  Score=49.11  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.+.|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.24  E-value=0.0029  Score=50.04  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|++|+||||+.+.|...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999998753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.23  E-value=0.0027  Score=57.66  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            45689999999999999999998654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.23  E-value=0.0035  Score=49.85  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999999853

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.23  E-value=0.0033  Score=56.42  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ....+|+|+|+|||||||+.+.|...+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999998754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.22  E-value=0.0029  Score=50.34  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++..|+|+|.+|+||||+.++|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999753

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.22  E-value=0.0028  Score=57.18  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            45689999999999999999998644

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=96.22  E-value=0.014  Score=53.23  Aligned_cols=100  Identities=13%  Similarity=0.041  Sum_probs=51.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      .+..|||+||+|   +|+.++|.+.+.-.+.++   .+. ...+...|.       ...+++.    ..+.+.+..    
T Consensus       231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~-pR~gE~dG~-------~Y~Fv~~----~~V~~~~~~----  288 (391)
T 3tsz_A          231 FLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSE-PRDAGTDQR-------SSGIIRL----HTIKQIIDQ----  288 (391)
T ss_dssp             SCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCC-CCCSSSCCC---------CCCCH----HHHHHHHTT----
T ss_pred             CCCEEEEECCCH---HHHHHHHHhhCccccccc---cCC-CCCcccCCc-------cCCcCcH----HHHHHHHHc----
Confidence            445588999998   899999998875444443   121 111111110       0123332    233333333    


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                       ++.+|||--+...   +.+......-++|||..|.-..++++.+|
T Consensus       289 -Gk~~iLdId~qg~---~~l~~~~~~p~~IFI~PPS~~~L~~~~~r  330 (391)
T 3tsz_A          289 -DKHALLDVTPNAV---DRLNYAQWYPIVVFLNPDSKQGVKTMRMR  330 (391)
T ss_dssp             -TCEEEECCCHHHH---HHHHHTTCCCEEEEEECCCHHHHHHHHHH
T ss_pred             -CCEEEEEeCHHHH---HHHHhCCCCCEEEEEeCcCHHHHHHHHhc
Confidence             5789999654433   34443322236778877654444444443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.22  E-value=0.0032  Score=50.65  Aligned_cols=25  Identities=20%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .....|+|+|.+|+||||+.+.|..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999964

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.21  E-value=0.0031  Score=50.41  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999975

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.21  E-value=0.0033  Score=50.49  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ....|+|+|.+|+||||+.++|...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.20  E-value=0.0036  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            3567899999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.20  E-value=0.0023  Score=54.79  Aligned_cols=26  Identities=27%  Similarity=0.276  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+--+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45578999999999999999998654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.20  E-value=0.0032  Score=49.02  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.++|..
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999975

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.20  E-value=0.0023  Score=51.50  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=21.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+...|+|+|.+|+||||+.++|...
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            3346789999999999999999988654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.20  E-value=0.0033  Score=48.65  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.|+|+|.+|+||||+.++|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.19  E-value=0.0029  Score=57.11  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            45688999999999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.19  E-value=0.0031  Score=54.57  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..++|+|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999765

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.19  E-value=0.0036  Score=55.52  Aligned_cols=27  Identities=22%  Similarity=0.529  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++|+||||++..||..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999999876

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.19  E-value=0.0028  Score=51.13  Aligned_cols=28  Identities=21%  Similarity=0.289  Sum_probs=21.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +++.....|+|+|.+|+||||+..+|..
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3444667899999999999999998854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.19  E-value=0.0032  Score=49.52  Aligned_cols=24  Identities=42%  Similarity=0.545  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.++|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            457899999999999999998864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.18  E-value=0.0036  Score=51.52  Aligned_cols=27  Identities=15%  Similarity=0.112  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+...|+|+|++|+||||+..+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.18  E-value=0.0041  Score=50.00  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ....|+|+|.+|+||||+..+|...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            5678999999999999999999865

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.16  E-value=0.0031  Score=54.94  Aligned_cols=22  Identities=41%  Similarity=0.582  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++|.||||+||||+++.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            8999999999999999999986

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.16  E-value=0.003  Score=56.87  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45588999999999999999998643

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.16  E-value=0.0039  Score=56.14  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-.|+|+||+||||||+.+.|+..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            33489999999999999999998765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.15  E-value=0.0031  Score=57.12  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            55688999999999999999998644

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.14  E-value=0.0033  Score=49.51  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.+.|...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            5578999999999999999999764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0036  Score=49.49  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..+...|+|+|.+|+||||+.+.|...
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence            346678999999999999999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.13  E-value=0.0046  Score=49.48  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+.|+|+|.+|+||||+.++|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            35568999999999999999998654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.12  E-value=0.003  Score=49.26  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...|+|+|++|+||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999998753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.11  E-value=0.0032  Score=54.43  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-+++|.|++||||||++..|+...
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999998643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.11  E-value=0.0027  Score=50.92  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|++|+||||+.++|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999975

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.10  E-value=0.0032  Score=50.19  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.+.|+|+|.+|+||||+.+.|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4678999999999999999999753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.10  E-value=0.0037  Score=50.27  Aligned_cols=26  Identities=31%  Similarity=0.462  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            35678999999999999999999763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.10  E-value=0.0039  Score=49.92  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .....|+|+|.+|+||||+.++|..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4668899999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.09  E-value=0.0038  Score=54.98  Aligned_cols=32  Identities=19%  Similarity=0.055  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      ..++|.|++|+||||+++.+++..+..+++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            47889999999999999999998886666654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.09  E-value=0.0028  Score=50.42  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      .++..|+|+|++|+||||+..+|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999998885

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.09  E-value=0.0037  Score=48.81  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ...|+|+|++|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999975

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.07  E-value=0.0024  Score=57.60  Aligned_cols=27  Identities=26%  Similarity=0.204  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +...++|+|++||||||+.+.|+..+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            445799999999999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.07  E-value=0.0034  Score=52.78  Aligned_cols=26  Identities=19%  Similarity=0.442  Sum_probs=21.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....+.|+|+|.+|+||||+.+.|..
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcC
Confidence            34668999999999999999999874

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.07  E-value=0.0038  Score=54.49  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=20.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++|.||+|+||||+++.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8899999999999999999986

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.06  E-value=0.0028  Score=54.66  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +-+++|+||.||||||+.+.|+-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            5578999999999999999998643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.06  E-value=0.0035  Score=56.80  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            45578999999999999999998643

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.06  E-value=0.0058  Score=50.04  Aligned_cols=26  Identities=19%  Similarity=-0.019  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +..+++++|++||||||.+-.++.++
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999998887

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.06  E-value=0.0024  Score=52.21  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .++..|+|+|++||||||+.+.|+.
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4667899999999999999998853

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.06  E-value=0.0038  Score=56.41  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||+||||||+.+.|+--+
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            55689999999999999999998644

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.06  E-value=0.0038  Score=48.75  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.+.|..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999975

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.05  E-value=0.0049  Score=49.66  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .....|+|+|.+|+||||+.+.|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            4568899999999999999999976

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.05  E-value=0.0036  Score=48.91  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.04  E-value=0.0053  Score=52.11  Aligned_cols=28  Identities=29%  Similarity=0.528  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+..++++.|.+|+||||++..|+..+
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999999765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.04  E-value=0.0032  Score=49.60  Aligned_cols=24  Identities=38%  Similarity=0.585  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.+.|..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999974

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.03  E-value=0.0046  Score=50.10  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+...|...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999998753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.03  E-value=0.004  Score=49.82  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.03  E-value=0.0035  Score=48.95  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.03  E-value=0.0028  Score=49.42  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.++|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999975

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.03  E-value=0.0042  Score=49.27  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            5678999999999999999999853

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.01  E-value=0.005  Score=60.96  Aligned_cols=26  Identities=38%  Similarity=0.704  Sum_probs=23.1

Q ss_pred             CCe-EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNV-QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~-~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +|. .++|.||||+|||++|+.|++.+
T Consensus       519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          519 RPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            443 68999999999999999999986

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.01  E-value=0.0031  Score=50.08  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+...|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            557899999999999999999974

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.01  E-value=0.0034  Score=54.95  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45688999999999999999997654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.01  E-value=0.0026  Score=57.17  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCC
Confidence            45589999999999999999998643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.00  E-value=0.0039  Score=56.86  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.-+++|+||+||||||+.+.|+--
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            5568999999999999999999853

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.00  E-value=0.0041  Score=48.46  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      ...|+|+|.+|+||||+.++|.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHc
Confidence            3579999999999999999885

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.99  E-value=0.004  Score=49.28  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.+.|..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHc
Confidence            3557899999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.98  E-value=0.0043  Score=50.47  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            36688999999999999999999863

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.98  E-value=0.0041  Score=51.23  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.+...|+|+|.+|+||||+...|..
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHc
Confidence            34678999999999999999999863

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.98  E-value=0.0038  Score=49.28  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .....|+|+|.+|+||||+.+.|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3557899999999999999998853

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.97  E-value=0.0037  Score=56.12  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|.|++||||||++..|+...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            66789999999999999999999876

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.96  E-value=0.0047  Score=49.60  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+.|+|+|.+|+||||+.++|...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            35678999999999999999999753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.96  E-value=0.0047  Score=48.27  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+.++|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999863

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.96  E-value=0.0062  Score=54.12  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      .+..++|.||+|+||||+++.+++.+.+..
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            345689999999999999999999987543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.95  E-value=0.0044  Score=54.95  Aligned_cols=33  Identities=18%  Similarity=0.133  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~   85 (287)
                      ++..++|.|+||+||||+|..++...|  +.++++
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            345678999999999999999997543  456666

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.95  E-value=0.005  Score=58.58  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=29.0

Q ss_pred             cccccCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           44 NFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        44 ~~~~~~~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...+.+.+.++-++.|+||.||||||+.+.|+-.+
T Consensus        15 ~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           15 KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            33455777788899999999999999999998654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.95  E-value=0.0033  Score=58.12  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+|+|+|++|+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.0035  Score=58.43  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+++|+||.||||||+++.|+..+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            56689999999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.93  E-value=0.0055  Score=49.49  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            46688999999999999999999764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.92  E-value=0.0025  Score=56.23  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+.-+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            45688999999999999999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.91  E-value=0.0036  Score=50.87  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      .....|+|+|.+|+||||+.++|.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHH
Confidence            355789999999999999999885

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.90  E-value=0.0053  Score=57.83  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999999766

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.90  E-value=0.0052  Score=49.98  Aligned_cols=28  Identities=21%  Similarity=0.103  Sum_probs=23.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++.....|+|+|.+|+||||+...|...
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhC
Confidence            3446678999999999999999999763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.90  E-value=0.0042  Score=50.08  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.+.|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            35678999999999999999999753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.90  E-value=0.0062  Score=56.07  Aligned_cols=27  Identities=22%  Similarity=0.073  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +.-.|+|+||+||||||+.+.|...++
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            456799999999999999999998774

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.88  E-value=0.0066  Score=49.09  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      ..+...|+|+|.+|+||||+..+|.
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHH
Confidence            4567899999999999999999885

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=95.87  E-value=0.005  Score=49.72  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3556899999999999999999986

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.87  E-value=0.0055  Score=48.78  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.+.|...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            35578999999999999999999753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.86  E-value=0.0055  Score=49.60  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..+...|+|+|.+|+||||+...|..
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            44678899999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.86  E-value=0.0061  Score=48.25  Aligned_cols=25  Identities=24%  Similarity=0.234  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.++|...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999998753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.86  E-value=0.0054  Score=52.21  Aligned_cols=27  Identities=15%  Similarity=0.363  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..+...|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence            346689999999999999999999743

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.85  E-value=0.0042  Score=49.80  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+...|+|+|.+|+||||+.+.|...+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence            355789999999999999998887654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.85  E-value=0.0043  Score=54.85  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      -.+++|+|+.||||||+.+.|...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            457889999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.85  E-value=0.0041  Score=62.43  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +..++|+|+||+||||+++.|+..+
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999999987

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.84  E-value=0.0057  Score=48.77  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4678899999999999999999874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.84  E-value=0.0068  Score=54.68  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .+...|+|+|.+||||||+++.+.-.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~~   58 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIHG   58 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4678999999999999999999965443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.83  E-value=0.0061  Score=54.87  Aligned_cols=26  Identities=23%  Similarity=0.084  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|.|||||||||++..++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.83  E-value=0.0029  Score=59.62  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .|+|.||||+|||++|+.|+..++
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             eeEeecCchHHHHHHHHHHHHHHh
Confidence            588999999999999999999774

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.82  E-value=0.0065  Score=48.63  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3568899999999999999999974

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.82  E-value=0.0027  Score=57.12  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||+||||||+.+.|+--+
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45689999999999999999998643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.81  E-value=0.0074  Score=50.21  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.81  E-value=0.0058  Score=49.58  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.+.|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            35678999999999999999999764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.79  E-value=0.0057  Score=48.54  Aligned_cols=24  Identities=21%  Similarity=0.312  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+..+|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999875

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.78  E-value=0.007  Score=54.06  Aligned_cols=27  Identities=26%  Similarity=0.527  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++.+|+|+|++|+||||+.+.|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999998765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.76  E-value=0.0069  Score=47.03  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .|+|+|.+|+||||+.++|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.75  E-value=0.0051  Score=54.10  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=22.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +++.++-+|+|+|.||+||||+.+.|..
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4455667899999999999999999974

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.75  E-value=0.006  Score=52.44  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...|+|+|++||||||+.+.|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999753

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=95.75  E-value=0.064  Score=47.59  Aligned_cols=118  Identities=19%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             CCCCeEEEEEcCCCCCHHH-------HHHHHHHHhCCCeeeh---hHHH---HHHHHcCCchHHHHHHHHhcCCcccHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGT-------YASRLSKFLGVPHIAT---GDLV---REELASSGSLSQQLSEIVNQGKLVSDEI  117 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTT-------la~~La~~lg~~~i~~---d~ll---r~~~~~~~~~~~~i~~~l~~g~~~~~~~  117 (287)
                      ..||  |+|+||.+.|--+       +-..|-++|+-.+.-+   .|+.   +..+. ....+..+......+...  + 
T Consensus       141 ~~RP--vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~-~~~~~~~~e~~~~~~~~~--e-  214 (337)
T 4dey_A          141 SMRP--VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLN-NPSKHAIIERSNTRSSLA--E-  214 (337)
T ss_dssp             SSCC--EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC--------------------CCCHH--H-
T ss_pred             CCCc--eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhh-cccchhhhcccccccchH--H-
Confidence            3455  8899999999853       7777888887653211   0110   00000 001111222223333222  1 


Q ss_pred             HHHHHHHHHHhcccCCCccEEEeCCCC-CHHHHHHHHHhcCccEEEEEec-CHHHHHHHHhCCC
Q 023080          118 IFNLLSKRLEAGQAGGESGFILDGFPR-TVKQAEILEEVMDIDLVVNLKL-CEDVLLEKCLGRR  179 (287)
Q Consensus       118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~-~~~~~~~l~~~~~~d~vi~L~~-~~e~l~~Rl~~R~  179 (287)
                      +...+...+.....  ++.+|||--+. ...+..   ....--++|||.. +.+++.+||.+|+
T Consensus       215 v~seVe~i~~v~~~--Gk~vILDIDvQnGa~qlk---~~~~~~i~IFI~PPS~eeLe~RL~~RG  273 (337)
T 4dey_A          215 VQSEIERIFELART--LQLVVLDADTINHPAQLS---KTSLAPIVVYVKISSPKVLQRLIKSRG  273 (337)
T ss_dssp             HHHHHHHHHHHTTT--CCEEEEEETTCCSGGGTT---TSSCCCEEEEECCSCHHHHHHHHHTTC
T ss_pred             HHhHHHHHHHHHhC--CCEEEEEeCcHHHHHHHH---hcCCCCEEEEEECcCHHHHHHHHHhCC
Confidence            22333333333221  47899997655 544432   2221124566655 5789999998885

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.74  E-value=0.0075  Score=52.80  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+|+|+|++|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            66788899999999999999999776

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.71  E-value=0.0059  Score=49.17  Aligned_cols=26  Identities=27%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+.++|...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            35678999999999999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.71  E-value=0.0069  Score=49.28  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .++..|+|+|++|+||||+.++|..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999998853

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.70  E-value=0.0055  Score=53.81  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..|+|.|+||+|||++|+.++...
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEECCCCchHHHHHHHHHHhC
Confidence            348899999999999999999854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.70  E-value=0.0066  Score=49.69  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+..+|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0067  Score=50.33  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....|+|+|.+|+||||+..+|..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999998863

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.70  E-value=0.006  Score=48.21  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.++|...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            5578999999999999999999763

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.69  E-value=0.0075  Score=49.15  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ...+.|+|+|.+|+||||+...|..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999999975

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.66  E-value=0.0077  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +.+|+|+.||||||+.+.|.--++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            788999999999999999987654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.62  E-value=0.0088  Score=55.29  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|.+|+|+|++|+||||++..||..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457788899999999999999999765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.62  E-value=0.0038  Score=55.62  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +..++|+|++||||||+.+.|+..+.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34789999999999999999987663

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.60  E-value=0.0083  Score=59.26  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..++|+|+||+||||+++.|+..+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45568999999999999999999987

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.60  E-value=0.0081  Score=49.04  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=21.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..+...|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence            34678999999999999999998875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.59  E-value=0.0068  Score=48.32  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.|+|+|.+|+||||+..+|..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.59  E-value=0.0086  Score=49.38  Aligned_cols=26  Identities=23%  Similarity=0.198  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+...|+|+|.+|+||||+..+|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            35688999999999999999999763

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.0087  Score=48.09  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+.|+|+|.+|+||||+.++|...-
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            55789999999999999999998653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.56  E-value=0.0078  Score=49.35  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .....|+|+|.+|+||||+.++|...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.55  E-value=0.007  Score=55.35  Aligned_cols=24  Identities=17%  Similarity=0.119  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.-++.|+|+|||||||++..|+-
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Confidence            556899999999999999998864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.55  E-value=0.0076  Score=55.33  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+.++.|+|++||||||+.+.|+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            4558999999999999999999863

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.55  E-value=0.0071  Score=48.43  Aligned_cols=25  Identities=24%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.54  E-value=0.0072  Score=52.98  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+|++.|++|+||||++..|+..+
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            37788999999999999999999776

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.54  E-value=0.0081  Score=50.30  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++-.++|.|+||+||||+|..++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            556889999999999999988764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.53  E-value=0.0086  Score=53.76  Aligned_cols=33  Identities=21%  Similarity=0.058  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~   85 (287)
                      ++-++.|.|+|||||||++..++...     .+.++++
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~   97 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA   97 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            56688999999999999999998654     2445655

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.52  E-value=0.0088  Score=60.00  Aligned_cols=24  Identities=42%  Similarity=0.616  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..++|.||||+|||++|+.|++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999987

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.51  E-value=0.0065  Score=58.57  Aligned_cols=26  Identities=23%  Similarity=0.516  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ..++|+|||||||||+++.|+..++.
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            36899999999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.51  E-value=0.0079  Score=54.15  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.+++|+|++|+||||+.+.|+..
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCEEEEECCCCccHHHHHHHHhcc
Confidence            457899999999999999999743

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.51  E-value=0.011  Score=52.10  Aligned_cols=30  Identities=17%  Similarity=0.057  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC--Ceeeh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGV--PHIAT   85 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~--~~i~~   85 (287)
                      .++|.|++|+||||+++.+++..+.  .+++.
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            7899999999999999999988753  34444

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.48  E-value=0.0083  Score=49.07  Aligned_cols=25  Identities=28%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.++|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4578999999999999999998763

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.46  E-value=0.0098  Score=53.16  Aligned_cols=26  Identities=15%  Similarity=0.018  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +++-++.|.|+|||||||++..|+..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35678899999999999999999986

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.46  E-value=0.0074  Score=49.06  Aligned_cols=25  Identities=20%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            3567899999999999999999863

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.45  E-value=0.0084  Score=49.17  Aligned_cols=25  Identities=36%  Similarity=0.547  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+...|+|+|.+|+||||+.++|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            4567899999999999999999874

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.43  E-value=0.0087  Score=54.10  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=22.2

Q ss_pred             CCeEEEE--EcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVF--LGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi--~G~pGSGKTTla~~La~~l   78 (287)
                      .+..++|  .|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4556777  9999999999999998875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.43  E-value=0.0092  Score=52.38  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...++|+|++||||||+.+.|+ .+
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            4578999999999999999998 54

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.42  E-value=0.0069  Score=49.47  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....|+|+|.+|+||||+...|..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhc
Confidence            456899999999999999999976

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.41  E-value=0.0097  Score=48.37  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....|+|+|.+|+||||+..+|..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.40  E-value=0.011  Score=54.47  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+|+|+|+.||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67788899999999999999999876

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.39  E-value=0.0064  Score=57.44  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..|+|+||+||||||+.+.|+..+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34568999999999999999998765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.38  E-value=0.0091  Score=48.60  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .....|+|+|.+|+||||+..+|..
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhh
Confidence            3457899999999999999999865

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.37  E-value=0.0084  Score=55.22  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++|+|++||||||+.+.|+..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            999999999999999999753

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.36  E-value=0.015  Score=48.88  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATG   86 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d   86 (287)
                      .+.|++.|++|+||||++-.++..+   |..  ++++|
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            4679999999999999988888765   543  44553

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.35  E-value=0.011  Score=47.97  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....|+|+|.+|+||||+..+|..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Confidence            457899999999999999999864

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.35  E-value=0.0077  Score=48.22  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      .+...|+|+|.+|+||||+..+|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            366789999999999999999884

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.32  E-value=0.0087  Score=51.23  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.||+||||+...|..
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC
Confidence            457899999999999999999975

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.31  E-value=0.017  Score=48.06  Aligned_cols=27  Identities=19%  Similarity=-0.023  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..+.+++|++||||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788999999999999999998877

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.25  E-value=0.0086  Score=52.48  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..+++|+|++||||||+.+.|+.
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCcHHHHHHHhcc
Confidence            34789999999999999999964

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.25  E-value=0.0061  Score=50.21  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+.|+|+|.+|+||||+.+.|...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            35678999999999999999998653

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.24  E-value=0.011  Score=53.14  Aligned_cols=33  Identities=15%  Similarity=0.047  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~   85 (287)
                      ++.+++|.|+|||||||+|..|+...     .+.++++
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            55688999999999999999998754     3456666

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.24  E-value=0.011  Score=52.44  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.++.|.|+|||||||++..|+...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            55689999999999999999999764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.23  E-value=0.012  Score=54.74  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++|.|++||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78899999999999999998876

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.20  E-value=0.014  Score=47.59  Aligned_cols=25  Identities=20%  Similarity=0.178  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+..+|...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            5578999999999999999998753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.19  E-value=0.0092  Score=47.95  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.++|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.19  E-value=0.0093  Score=52.28  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +..+|+|+|+||+||||+.+.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHC
Confidence            455899999999999999999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.18  E-value=0.014  Score=48.10  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=22.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHH-HHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASR-LSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~-La~~l   78 (287)
                      +.+...|+|+|.+|+||||+.++ +...+
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            34667899999999999999998 44443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.13  E-value=0.014  Score=47.22  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ....|+|+|.+|+||||+..+|...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.12  E-value=0.013  Score=50.56  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...|+|+|.||+||||+.++|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            467999999999999999999753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.10  E-value=0.0065  Score=48.24  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=11.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....|+|+|.+|+||||+..+|..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999998864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.09  E-value=0.014  Score=52.26  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++-++.|+|++||||||+.+.|+....
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            666899999999999999999998864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.09  E-value=0.016  Score=51.05  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++-.++|.|+||+||||++..++...
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456689999999999999999998664

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.09  E-value=0.012  Score=51.90  Aligned_cols=25  Identities=20%  Similarity=0.117  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++.++.|.|+|||||||+|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999865

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.08  E-value=0.011  Score=51.73  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      -.+.|+|+|++|+||||+.+.|+.
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            456789999999999999999863

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.016  Score=55.95  Aligned_cols=29  Identities=21%  Similarity=0.192  Sum_probs=24.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...++-++.|+||.||||||+.+.|+-.+
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            44567799999999999999999998654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.08  E-value=0.014  Score=55.87  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+++|.|+|||||||++..|...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999998765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.05  E-value=0.013  Score=55.62  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++-+++|+|+.||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            466789999999999999999998644

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.02  E-value=0.015  Score=53.84  Aligned_cols=28  Identities=18%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .++-++.|+|++||||||+.+.|+..+.
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3566899999999999999999998774

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.00  E-value=0.013  Score=54.87  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      -+++|+||+||||||+.+.|+--+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            578999999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=94.99  E-value=0.016  Score=51.36  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=21.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..+++.|+|+|.+|+||||+..+|..
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~  187 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKL  187 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhC
Confidence            34667899999999999999998853

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.97  E-value=0.014  Score=56.01  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-.++|.||+||||||+.+.|+.-+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999998765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.93  E-value=0.016  Score=49.91  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.+.|+|+|.+||||||+.+.|...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999999754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.91  E-value=0.012  Score=56.32  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-.++|+||+||||||+.+.|+.-+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            44578999999999999999998765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.90  E-value=0.016  Score=47.92  Aligned_cols=25  Identities=36%  Similarity=0.489  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ....|+|+|.+|+||||+..+|...
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            4578999999999999999999753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.88  E-value=0.016  Score=51.10  Aligned_cols=32  Identities=31%  Similarity=0.333  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ...-++|.|++|+||||++..|.++ |...++-
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d  174 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD  174 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence            3456899999999999999999875 7666644

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.87  E-value=0.0061  Score=58.70  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      .|+|.|+||+|||++|+.+++.++...+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~  356 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVY  356 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCcee
Confidence            6899999999999999999998765443

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=94.87  E-value=0.023  Score=48.28  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEEEcCC---------CCCHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCP---------GVGKGTYASRLSK   76 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~p---------GSGKTTla~~La~   76 (287)
                      +...+...|+|+|.+         |+||||+.++|..
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            334466899999999         9999999999985

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.83  E-value=0.02  Score=53.08  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++-.++|.|+||+||||++..++...
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            355689999999999999999988753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.81  E-value=0.015  Score=54.92  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=0.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHH--HH
Q 023080           53 RNVQWVFLGCPGVGKGTYASR--LS   75 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~--La   75 (287)
                      ++-+++|+|++||||||+++.  ++
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~   62 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYN   62 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.76  E-value=0.022  Score=44.45  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +-+.+|+||.||||||+...|.=.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999888643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.75  E-value=0.017  Score=49.36  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.|+|+|.|||||||+.+.|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.74  E-value=0.019  Score=52.35  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .++..|.|+|+||+||||+.++|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3567899999999999999999987

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.68  E-value=0.023  Score=52.40  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..+..|+|+|+||+||||+.++|...
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCC
Confidence            35689999999999999999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.65  E-value=0.016  Score=55.06  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|+.||||||+.+.|+-.+
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45678999999999999999998654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.60  E-value=0.022  Score=50.42  Aligned_cols=23  Identities=9%  Similarity=0.070  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.|.|+|||||||+|-.++...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999988876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.60  E-value=0.0042  Score=50.41  Aligned_cols=24  Identities=29%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      .....|+|+|.+|+||||+.++|.
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999988774

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.59  E-value=0.017  Score=53.02  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      -.+.|+|+|++||||||+.+.|+..
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCC
Confidence            4466899999999999999999753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.58  E-value=0.0073  Score=53.25  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +..+++|+|++|+||||+.+.|+.
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcc
Confidence            456899999999999999999863

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.57  E-value=0.029  Score=48.42  Aligned_cols=26  Identities=15%  Similarity=0.070  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+.|+|+|.+|+||||+...|...
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            35568999999999999999999753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.55  E-value=0.021  Score=54.31  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+|+.||||||+.+.|+-.+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45688999999999999999998654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.53  E-value=0.0088  Score=49.10  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      .....|+|+|.+|+||||+.++|.
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~   32 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVL   32 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999999886

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.47  E-value=0.022  Score=51.36  Aligned_cols=34  Identities=21%  Similarity=0.081  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATG   86 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d   86 (287)
                      ++-.+.|.|+|||||||+|..++...     .+.++++.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            55678889999999999999998754     34566653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.47  E-value=0.022  Score=54.93  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+-.+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45688999999999999999998643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=94.45  E-value=0.0076  Score=48.78  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=6.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+...|..
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~   42 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTS   42 (208)
T ss_dssp             EEEEEEEC----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	2e-27
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	8e-27
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-26
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	9e-26
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	1e-25
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-25
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	1e-23
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	5e-22
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	3e-21
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	7e-21
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	3e-20
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-19
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	5e-09
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-08
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	2e-07
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	9e-07
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	1e-06
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	2e-06
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	2e-06
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	5e-05
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	9e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	2e-04
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	9e-04
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	0.001
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	0.001
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.003

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  103 bits (256), Expect = 2e-27
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 38/223 (17%)

Query: 53  RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL 112
           + V+ V LG PG GKGT A +L+K   V H+ATGD++R  +AS   L ++L   ++ GKL
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLL 172
           VSDE++  L+ K LE      ++GF+LDGFPRTV+QAE+L+++M+        + E  + 
Sbjct: 62  VSDEMVLELIEKNLE--TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 119

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           +  L RR+  +                                       +DD ++ +K 
Sbjct: 120 DSLLIRRITGRL------------------------------------IHSDDNKKALKI 143

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           RL  Y+ ++ P+ E+Y  RG     D        +  +L A +
Sbjct: 144 RLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 186

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  101 bits (251), Expect = 8e-27
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 43/218 (19%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           V +G PG GKGT A ++    G+PHI+TGD+ R  +     L  Q  + +++G LV DE+
Sbjct: 4   VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
              ++ +RL   +   ++GF+LDGFPRTV QAE LE ++                     
Sbjct: 64  TIGIVRERLS--KDDCQNGFLLDGFPRTVAQAEALETMLA-------------------- 101

Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
                                +    +     +     +      ADD E  V  RL V 
Sbjct: 102 ---------------------DIGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEVN 140

Query: 238 NEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
            ++ +P+ +FY  +G L   +    + + +  + E L 
Sbjct: 141 MKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLG 178

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 99.6 bits (247), Expect = 3e-26
 Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 43/217 (19%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           V +G PG GKGT A R+ +  G PHI+TGD+ R  +     L  +    ++QG LV DE+
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
              ++ +RL   ++  ++GF+LDGFPRTV QAE L++++                     
Sbjct: 64  TIGIVRERLS--KSDCDNGFLLDGFPRTVPQAEALDQLLA-------------------- 101

Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
                                +    I     +            ADD  + V  RL V 
Sbjct: 102 ---------------------DMGRKIEHVLNIQVEKEELIARLTADDNPDTVTNRLEVN 140

Query: 238 NEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
             ++ P+  FY ++  L+  +    I + +  L   L
Sbjct: 141 MNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 9e-26
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 45/225 (20%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-SSGSLSQQLSEIVNQGKLVSDE 116
             LG PG GKGT  +R+ +  G  H++ G+L+R+E         + + + + +GK+V  E
Sbjct: 5   FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 64

Query: 117 IIFNLLSKRLEAGQ--AGGESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDV 170
           I  +LL + ++        ++ F++DGFPR     +   + M    D+  V+      ++
Sbjct: 65  ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEI 124

Query: 171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVV 230
            +E+CL R   S                                       R+DD  E +
Sbjct: 125 CIERCLERGKSSG--------------------------------------RSDDNRESL 146

Query: 231 KERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           ++R++ Y + ++P+ + Y   GK+ + D    + E + ++++  +
Sbjct: 147 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 191

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 98.4 bits (244), Expect = 1e-25
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 54/236 (22%)

Query: 53  RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL 112
           R ++   +G PG GKGT +SR++K   + H+++GDL+R+ +     +       ++QGKL
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64

Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLL 172
           + D+++  L+   L+      +  ++LDGFPRT+ QAE L+    ID V+NL +  +V+ 
Sbjct: 65  IPDDVMTRLVLHELKNLT---QYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIK 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           ++   R                                                 E V +
Sbjct: 122 QRLTDRP------------------------------------------------ETVVK 133

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN--LDEYEEKQSAA 286
           RL+ Y  +++PV E+YR +G L  F       + WP +   L   L +  ++ S  
Sbjct: 134 RLKAYEAQTEPVLEYYRKKGVLETFS-GTETNKIWPHVYAFLQTKLPQRSQETSVT 188

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 97.7 bits (242), Expect = 2e-25
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 51/223 (22%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + LG PG GKGT A +L++ LG+P I+TG+L R  +     L  +    ++ G LV  ++
Sbjct: 4   LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
              L+  RL        +GFILDG+PR+V+QA+ L E++     DID V+  ++ E+VLL
Sbjct: 64  TNELVDDRLN--NPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121

Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
           E+  GR                                           RADDT++V+  
Sbjct: 122 ERLKGRG------------------------------------------RADDTDDVILN 139

Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
           R++VY +++ P+ E+YR+  +L   D  G + E + + L AL 
Sbjct: 140 RMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRALG 180

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 93.5 bits (231), Expect = 1e-23
 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 38/218 (17%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
             +G PG GKGT   ++ +  G  H++TGDL+R E++S  +  + LSEI+ +G+LV  E 
Sbjct: 12  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLET 71

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           + ++L   +   +     GF++DG+PR VKQ E  E  +    ++      D   E    
Sbjct: 72  VLDMLRDAMV-AKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLL---YVDAGPETMTK 127

Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
           R +                                         R DD EE +K+RL  Y
Sbjct: 128 RLLKRGETSG----------------------------------RVDDNEETIKKRLETY 153

Query: 238 NEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
            + ++PV  FY  RG + + +  G + + + ++   L+
Sbjct: 154 YKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLD 191

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.9 bits (219), Expect = 5e-22
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 40/219 (18%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGS-LSQQLSEIVNQGKLVSDE 116
             LG PG GKGT   +L K     H++ GDL+R E   +GS   + +   + +G++V  E
Sbjct: 12  FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 71

Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC-EDVLLEKC 175
           I   LL   +       +  F++DGFPR + QA   E  +     +    C ED++LE+ 
Sbjct: 72  ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERL 131

Query: 176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLR 235
           L R   S                                        +DD  E +K+R  
Sbjct: 132 LERGKTSGR--------------------------------------SDDNIESIKKRFN 153

Query: 236 VYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
            + E S PV E++  + K++       + + +  + +A+
Sbjct: 154 TFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 192

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 86.9 bits (214), Expect = 3e-21
 Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 49/230 (21%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           +  G P  GKGT    +     + HI+ GDL+R E+A+     ++  E + +G+LV DEI
Sbjct: 7   MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEI 66

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           + N++ +R        E+G++LDG+PR+  QA  LE +        ++    +LL+    
Sbjct: 67  VVNMVKER-LRQPDAQENGWLLDGYPRSYSQAMALETLE-------IRPDTFILLDVPDE 118

Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
             +      +                                       EE VK RL  Y
Sbjct: 119 LLVERVVFDDT--------------------------------------EEKVKLRLETY 140

Query: 238 NEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN-LDEYEEKQSAA 286
            +  + +   Y N   +++      +   + K+ E L  + E + +  ++
Sbjct: 141 YQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSS 188

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 85.8 bits (211), Expect = 7e-21
 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 45/221 (20%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
             LG PG GKGT  + + +  G  H++ GDL+R+E  S     + ++ ++  G++V   +
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE----EVMDIDLVVNLKLCEDVLLE 173
              LL   ++A Q      F++DGFPR  +     E    + +D   V+     E+V+ +
Sbjct: 70  TVKLLKNAIDANQG---KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQ 126

Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
           + L R   S                                         DD  E +K+R
Sbjct: 127 RLLKRGESSGRS--------------------------------------DDNIESIKKR 148

Query: 234 LRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
              +N +++ V + Y    K+        + E +  +    
Sbjct: 149 FNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 189

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.5 bits (205), Expect = 3e-20
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 45/223 (20%)

Query: 55  VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS 114
           ++ V +G PG GKGT A  L +     H+ATGD++R ++A    L  +  +I++QG LVS
Sbjct: 3   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 62

Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEK 174
           D+I+ N++   L       ++GFILDGFPRT+ QAE L++++        K  E  + ++
Sbjct: 63  DDIMVNMIKDELTN-NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDE 121

Query: 175 CLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERL 234
            L  R+ +                                               +K+RL
Sbjct: 122 LLVARITNAD--------------------------------------------ALKKRL 137

Query: 235 RVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277
             Y+ +++P+ +FY+  G     D        W  +L  L  +
Sbjct: 138 AAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKN 180

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 81.1 bits (199), Expect = 3e-19
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 52/222 (23%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI 117
           + LG P  GKGT A  + +  G+P I+TGD++R  + S   L +Q  +I++ GKLV+DE+
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63

Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
           +  L+ +R+   Q    +GF+LDGFPRT+ QA+ ++E       V     E  + ++ + 
Sbjct: 64  VIALVKERIA--QEDCRNGFLLDGFPRTIPQADAMKEAGINVDYV----LEFDVPDELIV 117

Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
            R+                                            D EE V++RL  Y
Sbjct: 118 DRIVKD-----------------------------------------DQEETVRKRLVEY 136

Query: 238 NEKSQPVEEFYRNRG-----KLLEFDLPGGIPESWPKLLEAL 274
           ++ + P+  +Y         K  + D    + E    L + L
Sbjct: 137 HQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 178

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 52.3 bits (124), Expect = 5e-09
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 4/129 (3%)

Query: 57  WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDE 116
           ++  G  GVGK T   RL+  L       GD++   +        +  E       ++ +
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE----LLALTWK 60

Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCL 176
            I +L    L A                 + Q    +        + L    + LL +  
Sbjct: 61  NITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA 120

Query: 177 GRRMCSQCG 185
            R+   Q G
Sbjct: 121 LRKKDEQMG 129

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 12/110 (10%)

Query: 57  WVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSE---IVN 108
            +  G PGVGK T  +++ + L         I  GD +       G    +       V 
Sbjct: 4   GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63

Query: 109 QGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDI 158
           + K +  +    +  +        GE    +D        +  L  +   
Sbjct: 64  KQKKLQIDAAKGIAEEARAG----GEGYLFIDTHAVIRTPSGYLPGLPSY 109

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 23/184 (12%), Positives = 49/184 (26%), Gaps = 3/184 (1%)

Query: 61  GCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN 120
           G    GK T A  ++K  G  ++ TG + R     +      + E+     L+    I  
Sbjct: 10  GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISF 69

Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180
             S+     Q        +    R  +    +  +  I  V    +     + +  G  M
Sbjct: 70  GRSE--TGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVM 127

Query: 181 CSQCGGNFNVANIN-VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE 239
             +  G   +           +                         +E+     +  + 
Sbjct: 128 DGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHR 187

Query: 240 KSQP 243
           ++ P
Sbjct: 188 ETSP 191

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 46.1 bits (108), Expect = 9e-07
 Identities = 18/136 (13%), Positives = 40/136 (29%), Gaps = 16/136 (11%)

Query: 58  VFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKL 112
           V  G PGVG  T +      L         ++ G ++ E             + + +   
Sbjct: 5   VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKE--ENLVSDRDQMRKMDP 62

Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLV-------VNLK 165
            + + I  +  +++       ES   +D           L  +    L        + ++
Sbjct: 63  ETQKRIQKMAGRKIAE--MAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 166 LCEDVLLEKCLGRRMC 181
              D +L + +     
Sbjct: 121 TTGDEILMRRMSDETR 136

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 61 GCPGVGKGTYASRLSKFLGVPHIATGDLVRE 91
          G  G GKGT    +++ L    + +G + R 
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 40

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 15/135 (11%)

Query: 48  KAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIV 107
           + PK  N+  +  G PG GK + A  ++  L          + +E               
Sbjct: 1   EQPKGINI--LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE------NHFYTEYDT 52

Query: 108 NQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC 167
                + +E   + L   +E          ++D     +             +VV L   
Sbjct: 53  ELDTHIIEEKDEDRLLDFMEP-IMVSRGNHVVDYHSSELFPE------RWFHMVVVLHTS 105

Query: 168 EDVLLEKCLGRRMCS 182
            +VL E+   R+   
Sbjct: 106 TEVLFERLTKRQYSE 120

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 58  VFLGCPGVGKGTYASRL-SKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDE 116
           + +GCPG GK T+A    +K  G  +I   D  +  +A       + ++     + +   
Sbjct: 6   LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKK---KEGIVTG 62

Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCL 176
           + F+     L  G +    G I+       ++    E               DV   + +
Sbjct: 63  MQFDTAKSILYGGDSVK--GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120

Query: 177 GR 178
            R
Sbjct: 121 KR 122

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE 91
          +  G PGVGK T    L+   G+ +I  GDL RE
Sbjct: 8  LLTGTPGVGKTTLGKELASKSGLKYINVGDLARE 41

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 58  VFLGCPGVGKGTYASRLSKFLGVPHIAT-GDLVREELASSGSLSQQLSEIVNQGKLVSDE 116
           +  G PG GK T A  L+   GVP +    D +   +         +   + Q    +  
Sbjct: 8   LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGR-----IDPWLPQSHQQNRM 62

Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCL 176
           I+           + G     ILDG  R          +      + L+      +E+CL
Sbjct: 63  IMQIAADVAGRYAKEGY--FVILDGVVR-PDWLPAFTALARPLHYIVLRTTAAEAIERCL 119

Query: 177 GR 178
            R
Sbjct: 120 DR 121

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREEL 93
          +V +G  G GK   AS ++  L    +    L     
Sbjct: 9  YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN 45

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHI 83
          V +G PG GK T   RL+K LGV  +
Sbjct: 5  VLVGLPGSGKSTIGRRLAKALGVGLL 30

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGD 87
            +G  G G  T    L++ LG   + T  
Sbjct: 6  FMVGARGCGMTTVGRELARALGYEFVDTDI 35

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83
          +N+  VF+G  G GK T A  L+K L +  +
Sbjct: 1  KNI--VFIGFMGSGKSTLARALAKDLDLVFL 29

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE 91
          RN+    +G  G GK T   +L++ L +    +   + +
Sbjct: 3  RNI--FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEK 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	100.0
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.98
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.98
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.98
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.98
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.77
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.76
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.7
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.7
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.69
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.69
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.67
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.66
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.66
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.6
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.59
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.56
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.53
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.53
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.52
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.51
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.49
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.44
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.41
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.41
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.33
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.3
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.24
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.23
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.22
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.17
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.12
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.05
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.05
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.04
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.02
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.88
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.87
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.85
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.59
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.56
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.55
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.51
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.5
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.24
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.21
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.17
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.03
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.93
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.93
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.93
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.91
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.9
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.89
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.88
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.83
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.81
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.69
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.68
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.64
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.64
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.56
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.5
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.49
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.48
d1okkd2	207	GTPase domain of the signal recognition particle r	97.46
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.45
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.43
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.34
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.34
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.34
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	97.32
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.28
d1zaka2	31	Microbial and mitochondrial ADK, insert "zinc fing	97.25
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.24
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.22
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.2
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.18
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.16
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.13
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.02
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.01
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	96.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.93
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.91
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.89
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.82
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.82
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.8
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.78
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.77
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.66
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.65
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.62
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.61
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.61
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.61
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.6
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.6
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.59
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.58
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.58
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.55
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.55
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.55
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.52
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.48
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.46
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.45
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.44
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.43
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.38
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.38
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.33
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.33
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.31
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.28
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.26
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.26
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.26
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.25
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.22
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.22
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.2
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.15
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.15
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.14
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.13
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.13
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	96.08
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.06
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.03
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.01
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.99
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.96
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.87
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.87
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.86
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.84
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.83
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.83
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.82
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.82
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.81
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.8
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.74
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.7
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.7
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.68
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.63
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.61
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.6
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.6
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.57
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.56
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.55
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.53
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.5
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.49
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.47
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.46
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.36
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.35
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.35
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.32
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.29
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.28
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	95.27
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.23
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.18
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.1
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.05
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.04
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.04
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.99
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.95
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.9
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.9
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.87
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.82
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.71
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.69
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.65
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.54
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.53
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.48
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.42
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.36
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.35
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.28
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.16
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.15
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.15
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.12
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	94.12
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.9
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.8
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.69
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	93.68
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.6
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.56
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.55
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.48
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.82
d1ak2a2	30	Microbial and mitochondrial ADK, insert "zinc fing	92.46
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.92
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.88
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.79
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.78
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.77
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	91.72
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	91.65
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	91.53
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.51
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.43
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.18
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.13
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.98
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.78
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.62
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.44
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	90.27
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.87
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	89.73
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.63
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.59
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	89.41
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.34
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.33
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	89.28
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.2
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	89.19
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.99
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.96
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.86
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.66
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	88.64
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.53
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.53
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	88.11
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.96
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	87.17
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.36
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.5
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.17
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.03
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	83.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	83.84
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.74
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	82.73
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.52
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	82.46
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.16
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	81.95
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	81.79

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=100.00  E-value=8.1e-33  Score=228.80  Aligned_cols=181  Identities=38%  Similarity=0.674  Sum_probs=165.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      +++++|+|+|||||||||+|+.||++||++|+++++++|+....++..+..+..++..|..++++.+..++...+.....
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~   80 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   80 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999998877655


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM  206 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~  206 (287)
                      .  +|||+||||++..|+..+...     ..+.++++|+++.+.+.+|+..|..                          
T Consensus        81 ~--~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~--------------------------  132 (190)
T d1ak2a1          81 K--NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLI--------------------------  132 (190)
T ss_dssp             T--TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEE--------------------------
T ss_pred             c--CceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCC--------------------------
Confidence            4  799999999999999888753     2478999999999999999999863                          


Q ss_pred             CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                     +.+++.+.+++|++.|++...|+.+||.+.+.++.||++++++||+++|+.+|+
T Consensus       133 ---------------~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~  186 (190)
T d1ak2a1         133 ---------------HSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS  186 (190)
T ss_dssp             ---------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ---------------CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence                           336788999999999999999999999999999999999999999999999885

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=100.00  E-value=6.6e-33  Score=229.69  Aligned_cols=177  Identities=32%  Similarity=0.602  Sum_probs=163.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      +.+.|+|+|+|||||||||+|+.||++||++||++++++|+.+...+..+..+...+..|..++++.+..++...+....
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL  210 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~  210 (287)
                      .   .+||+||||++..|++.|+....++.+|+|+++.+++.+|+..|                                
T Consensus        83 ~---~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r--------------------------------  127 (189)
T d2ak3a1          83 Q---YNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDR--------------------------------  127 (189)
T ss_dssp             T---SCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGS--------------------------------
T ss_pred             h---cCcccccccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccc--------------------------------
Confidence            4   58999999999999999998888999999999999999998554                                


Q ss_pred             CCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchh
Q 023080          211 PPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEY  279 (287)
Q Consensus       211 ~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~  279 (287)
                                      .+.+++|++.|++...++.+||.+.+.++.+|++ .+++|+++|.+.|.....
T Consensus       128 ----------------~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~idg~-~~~eV~~~I~~~i~~~l~  179 (189)
T d2ak3a1         128 ----------------PETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGT-ETNKIWPHVYAFLQTKLP  179 (189)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHHTTSC
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCC-ChHHHHHHHHHHHHHHhh
Confidence                            5788999999999999999999999999999998 579999999999986654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=1.5e-32  Score=227.79  Aligned_cols=184  Identities=27%  Similarity=0.462  Sum_probs=165.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA  131 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~  131 (287)
                      .+|.+|+|+|||||||||+|+.||++||+.++++++++++........+..+..++..+...++.....++..+......
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG   83 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhhc
Confidence            47789999999999999999999999999999999999999999999999999999999999999998888887766543


Q ss_pred             CCCccEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080          132 GGESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA  207 (287)
Q Consensus       132 ~~~~g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~  207 (287)
                         ++||+||||++..++..+....    .|+++|+|+++++++.+|+.+|+...                         
T Consensus        84 ---~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~-------------------------  135 (194)
T d1qf9a_          84 ---KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESS-------------------------  135 (194)
T ss_dssp             ---CCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTS-------------------------
T ss_pred             ---CCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhcccc-------------------------
Confidence               5899999999999998887643    48899999999999999998875321                         


Q ss_pred             CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                   .+.++..+.+++|++.|++...++.++|++.+.++.||+++++++|+++|.++|+.
T Consensus       136 -------------~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         136 -------------GRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             -------------CCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             -------------ccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                         45678899999999999999999999999999999999999999999999998874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=9.8e-33  Score=229.21  Aligned_cols=185  Identities=31%  Similarity=0.557  Sum_probs=168.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      ++.+|+|+|||||||||+|+.|+++||++||++++++++.....+..+..+.+++..|..++++++..++..++....+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   86 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDT   86 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999998877655


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                       .+|||+||||++..|++.+... ..++.++++.++.+++.+|...+...                              
T Consensus        87 -~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~------------------------------  135 (194)
T d3adka_          87 -SKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGET------------------------------  135 (194)
T ss_dssp             -CSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHH------------------------------
T ss_pred             -cccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhccc------------------------------
Confidence             6899999999999999999875 46889999999999999998776422                              


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                              ..|.+|+.+.+++|++.|++...++.+||++.+.++.||+++++++|+++|...|+.
T Consensus       136 --------~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         136 --------SGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             --------HTCCCCCSTTHHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             --------ccCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                    256788888999999999999999999999999999999999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.5e-32  Score=221.69  Aligned_cols=173  Identities=32%  Similarity=0.621  Sum_probs=158.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|||||||||+|+.|+++||+.++++++++++.....++.+..+.+++.+|..+|++++..++...+......  
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~--   78 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCR--   78 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGG--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccc--
Confidence            689999999999999999999999999999999999999999999999999999999999999999999888776654  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA  213 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~  213 (287)
                      +|||+||||++..|+..+...+ .|+++|+|++|++++.+|+..|                                   
T Consensus        79 ~g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~-----------------------------------  123 (179)
T d1e4va1          79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKD-----------------------------------  123 (179)
T ss_dssp             GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT-----------------------------------
T ss_pred             cceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhccc-----------------------------------
Confidence            7999999999999999988765 5999999999999999999764                                   


Q ss_pred             ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhc-----CcEEEEeCCCCcccHHHHHHHHhc
Q 023080          214 HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNR-----GKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       214 ~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~-----~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                 ++.+.+++|++.|++...++.++|.+.     ..++.||+++++++|+++|.++|.
T Consensus       124 -----------~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~lg  179 (179)
T d1e4va1         124 -----------DQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG  179 (179)
T ss_dssp             -----------CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHHC
T ss_pred             -----------ccHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHhC
Confidence                       456889999999999999999999763     358999999999999999998874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.7e-31  Score=218.01  Aligned_cols=172  Identities=34%  Similarity=0.663  Sum_probs=157.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      .|+|+|+|||||||||+|+.|+++||+++|++++++++.....+..+..+..++..|..+++.....++..++....+. 
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-   80 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC-   80 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccc-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999888876655 


Q ss_pred             CccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080          134 ESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP  208 (287)
Q Consensus       134 ~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~  208 (287)
                      ..|||+||||++..|+..+...     ..|+++|+|+++.+++.+|+..+                              
T Consensus        81 ~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~------------------------------  130 (180)
T d1akya1          81 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA------------------------------  130 (180)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH------------------------------
T ss_pred             cCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc------------------------------
Confidence            5799999999999999876653     24899999999999999998653                              


Q ss_pred             CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                         +.+.+|++.|++...++.++|++.+.++.||+++++++|+++|+.+|.
T Consensus       131 -------------------~~~~~r~~~y~~~~~~v~~~y~~~~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         131 -------------------DALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             -------------------HHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             -------------------ccccchHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence                               567889999999999999999999999999999999999999999886

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2e-31  Score=220.81  Aligned_cols=185  Identities=26%  Similarity=0.569  Sum_probs=163.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc-CCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc-
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS-SGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA-  131 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~-~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~-  131 (287)
                      |++|+|+|||||||||+|++||++||+.||++++++|..... .++.++.+..++.+|..++++.+..++...+....+ 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            789999999999999999999999999999999999987754 577889999999999999999999998877755322 


Q ss_pred             -CCCccEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080          132 -GGESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM  206 (287)
Q Consensus       132 -~~~~g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~  206 (287)
                       ....+|++||||++..|+..++...    .++.+++++++.+++.+|+.+|+...                        
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~------------------------  136 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS------------------------  136 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS------------------------
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcc------------------------
Confidence             1147999999999999998887643    37889999999999999999885332                        


Q ss_pred             CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                    +|.++..+.+++|++.|++...++.+||++.+.++.||+++++++|+++|.++|+.
T Consensus       137 --------------~r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         137 --------------GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             --------------SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             --------------cCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence                          46688899999999999999999999999999999999999999999999998874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.98  E-value=4.9e-31  Score=216.63  Aligned_cols=175  Identities=33%  Similarity=0.617  Sum_probs=159.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|||||||||+|+.||++||++|++++++++......++.+..+..++.+|..+|+.....++..++......  
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~--   78 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCD--   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTS--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccc--
Confidence            679999999999999999999999999999999999999989999999999999999999999999999988776654  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+||+||||++..++..+....     .+.++++++++.+.+.+|+..                                
T Consensus        79 ~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~--------------------------------  126 (182)
T d1s3ga1          79 NGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTA--------------------------------  126 (182)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHT--------------------------------
T ss_pred             cceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhc--------------------------------
Confidence            7999999999999998877632     367889999999999999754                                


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                    +++++.+++|++.|++...++.+||++.+.++.||+++++++|+++|..+|+..
T Consensus       127 --------------~~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         127 --------------DDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQGN  180 (182)
T ss_dssp             --------------TCSHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHTCC
T ss_pred             --------------cchhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence                          356788999999999999999999999999999999999999999999998753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.9e-31  Score=219.62  Aligned_cols=187  Identities=27%  Similarity=0.510  Sum_probs=163.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH-cCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-SSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~-~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      +...+|+|+|||||||||+|+.|+++||++||++++++|.... ..+..+..+..++..|...++.....++..++....
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV   85 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhh
Confidence            3556788999999999999999999999999999999998665 457889999999999999999998888887766644


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .....++|+||||++..|+..+... ..++.+++|+++++++++|+..|..                             
T Consensus        86 ~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~-----------------------------  136 (196)
T d1ukza_          86 KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK-----------------------------  136 (196)
T ss_dssp             HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH-----------------------------
T ss_pred             ccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccc-----------------------------
Confidence            3335799999999999999888765 4689999999999999999987642                             


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                               ...+.++..+.+++|++.|++...++.+||++.+.++.||+++++++|+++|+.+|++
T Consensus       137 ---------~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~  194 (196)
T d1ukza_         137 ---------TSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  194 (196)
T ss_dssp             ---------HHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             ---------cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                     1246678899999999999999999999999999999999999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=3.3e-31  Score=217.36  Aligned_cols=175  Identities=40%  Similarity=0.752  Sum_probs=159.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|||||||||+|+.|+++||+.|+++++++++.....++.+..+..++.+|..++.++...++...+....+.  
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--   78 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAA--   78 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccc--
Confidence            689999999999999999999999999999999999999998999999999999999999999999999888776654  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+||+||||.+..++..+....     .|+++++|+++.+++.+|+.+|.                              
T Consensus        79 ~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~------------------------------  128 (181)
T d2cdna1          79 NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG------------------------------  128 (181)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC------------------------------
T ss_pred             ccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccc------------------------------
Confidence            7999999999999998886643     58999999999999999999874                              


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                  |.++..+.+++|++.|++...++.++|++  .++.||++++++||+++|+++|.
T Consensus       129 ------------r~~~~~~~i~~rl~~y~~~~~~l~~~y~~--~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         129 ------------RADDTDDVILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             ------------CTTCSHHHHHHHHHHHHHHTTTHHHHTTT--TEEEEECCSCHHHHHHHHHHHTT
T ss_pred             ------------cccchhHHHHHHHHHHHHHHHHHHHHHhc--CeEEEECCCCHHHHHHHHHHHhC
Confidence                        34678899999999999999999999965  58899999999999999999886

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=9.6e-30  Score=208.16  Aligned_cols=174  Identities=34%  Similarity=0.649  Sum_probs=158.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |+|+|+|||||||||+|+.||++||++|++++++++......+..+..+..++.+|..+++.....++..++....+.  
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQ--   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhh--
Confidence            579999999999999999999999999999999999988888999999999999999999999999998888777665  


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL  209 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~  209 (287)
                      .+|+++|+|....+...+....     .++++++|+++.+.+.+|+..+                               
T Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~-------------------------------  127 (182)
T d1zina1          79 NGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD-------------------------------  127 (182)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT-------------------------------
T ss_pred             cCcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc-------------------------------
Confidence            7999999999998887776543     4789999999999999999763                               


Q ss_pred             CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                     ++++.+++|++.|++...++.+||.+.+.++.||+++++++|+++|..+|+.
T Consensus       128 ---------------~~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~~  179 (182)
T d1zina1         128 ---------------DNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGG  179 (182)
T ss_dssp             ---------------CSHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             ---------------cchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence                           4678899999999999999999999999999999999999999999999873

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=7.6e-30  Score=210.69  Aligned_cols=176  Identities=30%  Similarity=0.495  Sum_probs=155.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG  132 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~  132 (287)
                      .||+|+|+|||||||||+|+.|+++||++|+++++++++.+.........+.+++..|...+.+.....+...+....+.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   81 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccc
Confidence            57889999999999999999999999999999999999999888888999999999999999998877777666655443


Q ss_pred             CCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080          133 GESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP  211 (287)
Q Consensus       133 ~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~  211 (287)
                       .++||+||+|++..|+..++... .|+.+|+|+++++++.+|+..|                                 
T Consensus        82 -~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~---------------------------------  127 (189)
T d1zaka1          82 -ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFD---------------------------------  127 (189)
T ss_dssp             -HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTT---------------------------------
T ss_pred             -cCcEEeeccchhhHHHhhhhhcccccchheeechhhhhhhhhcccc---------------------------------
Confidence             46899999999999999998764 5999999999999999999654                                 


Q ss_pred             CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                   ++.+.+++|++.|++...++.++|+  +.++.||+++++++|+++|.++|+.-
T Consensus       128 -------------~~~e~~~~rl~~y~~~~~~l~~~y~--~~~~~Id~~~~idev~~~I~~~l~~i  178 (189)
T d1zaka1         128 -------------DTEEKVKLRLETYYQNIESLLSTYE--NIIVKVQGDATVDAVFAKIDELLGSI  178 (189)
T ss_dssp             -------------CCTTHHHHHHHHHHHHHHHHHHTTC--CCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             -------------chHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence                         2346788999999999999999985  56899999999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.77  E-value=2.6e-18  Score=138.39  Aligned_cols=163  Identities=14%  Similarity=0.150  Sum_probs=101.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCcc
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESG  136 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~g  136 (287)
                      |+|+|+|||||||+|+.||+++|++++++|+++++..      |..+.+++....   ...+.......+.....  ...
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~------g~~i~ei~~~~g---~~~~~~~~~~~l~~~~~--~~~   73 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS------GMTVADVVAAEG---WPGFRRRESEALQAVAT--PNR   73 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH------CSCHHHHHHHHH---HHHHHHHHHHHHHHHCC--SSE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh------hhhhhhhhcccc---hHHHHHHHHHHHHhhcc--ccc
Confidence            7789999999999999999999999999999887632      222333333211   12222333333333222  234


Q ss_pred             EEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcc
Q 023080          137 FILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH  214 (287)
Q Consensus       137 ~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~  214 (287)
                      ++..+  .+......+.+...   ..+|||+++.+++.+|+..+....                                
T Consensus        74 ~~~~~~~~~~~~~~~~~l~~~---~~~v~L~~~~e~l~~Rl~~~~~~~--------------------------------  118 (170)
T d1e6ca_          74 VVATGGGMVLLEQNRQFMRAH---GTVVYLFAPAEELALRLQASLQAH--------------------------------  118 (170)
T ss_dssp             EEECCTTGGGSHHHHHHHHHH---SEEEEEECCHHHHHHHHHHHHCSC--------------------------------
T ss_pred             eecccccchhhhHHHHhhhcc---ceeEEEecCchhHHHHHhhccccc--------------------------------
Confidence            44443  44444444555443   379999999999999997653211                                


Q ss_pred             cccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          215 CMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       215 ~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                            .|.........+.++.......+   +|.+... +.||+++++++++.+|.+.|+
T Consensus       119 ------~r~~~~~~~~~~~~~~~~~er~~---lY~~~a~-~~Id~~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         119 ------QRPTLTGRPIAEEMEAVLREREA---LYQDVAH-YVVDATQPPAAIVCELMQTMR  169 (170)
T ss_dssp             ------CCCCTTHHHHHHHHHHHHHHHHH---HHHHHCS-EEEETTSCHHHHHHHHHHHTT
T ss_pred             ------cCCCCCCCCHHHHHHHHHHHHHH---HHHHcCC-EEEcCCCCHHHHHHHHHHHcC
Confidence                  22233334444444444333333   4554444 468999999999999998875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1e-17  Score=134.01  Aligned_cols=160  Identities=14%  Similarity=0.108  Sum_probs=103.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH-------HHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI-------IFNLLSKR  125 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~-------~~~~l~~~  125 (287)
                      .+.+|+|+|+|||||||+|+.|++++|+.++++|++......          .....+.......       +...+...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI----------EKMASGEPLNDDDRKPWLQALNDAAFAM   74 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHh----------hhhccCcceehhhhHHHHHHHHHHHHHH
Confidence            567888999999999999999999999999999876543211          1111112111111       11122222


Q ss_pred             HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCcc
Q 023080          126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSIS  205 (287)
Q Consensus       126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~  205 (287)
                      +..     ...++++...........+.....+..+|||++|++++.+|+.+|..+                        
T Consensus        75 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~------------------------  125 (171)
T d1knqa_          75 QRT-----NKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH------------------------  125 (171)
T ss_dssp             HHH-----CSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTC------------------------
T ss_pred             Hhc-----cCceEeeccchHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCC------------------------
Confidence            222     245555544344445556666667778999999999999999988421                        


Q ss_pred             CCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          206 MAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       206 ~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                                        ....+.++.+++.|+..       +.....++.||+++++|+++++|.+.|++
T Consensus       126 ------------------~~~~~~~~~~~~~~e~~-------~~~e~~~~~id~~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         126 ------------------FFKTQMLVTQFETLQEP-------GADETDVLVVDIDQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             ------------------CCCHHHHHHHHHHCCCC-------CTTCTTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred             ------------------CccHHHHHhhHHHhhCC-------CcccCCEEEEeCCCCHHHHHHHHHHHhcC
Confidence                              23455666555544321       11233478899999999999999998863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-16  Score=130.24  Aligned_cols=169  Identities=15%  Similarity=0.118  Sum_probs=101.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHH----------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF----------  119 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~----------  119 (287)
                      ++.+|+|.|++||||||+++.|+++|   |..++.+..     ....++.++.+..++............          
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~-----p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~   76 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF-----PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ   76 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES-----SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC-----CCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHH
Confidence            67899999999999999999999987   555554311     112334555666665554444333322          


Q ss_pred             -HHHHHHHHhcccCCCccEEEeCCCCC------------HHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080          120 -NLLSKRLEAGQAGGESGFILDGFPRT------------VKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCG  185 (287)
Q Consensus       120 -~~l~~~l~~~~~~~~~g~Ildg~p~~------------~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g  185 (287)
                       ..+...+..     +..+|+|.|..+            ......+.. ...||++|||++|++++++|...++.     
T Consensus        77 ~~~i~~~l~~-----g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~-----  146 (209)
T d1nn5a_          77 VPLIKEKLSQ-----GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE-----  146 (209)
T ss_dssp             HHHHHHHHHT-----TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----C-----
T ss_pred             HHhHHHHhhc-----ccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccc-----
Confidence             122222222     357888965321            122222221 23499999999999999999765431     


Q ss_pred             CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCccc
Q 023080          186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPE  265 (287)
Q Consensus       186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~ee  265 (287)
                                                           ..++.+..++..+.|.+...      .....++.||+++++++
T Consensus       147 -------------------------------------~~E~~~~~~r~~~~Y~~l~~------~~~~~~~~IDa~~~~e~  183 (209)
T d1nn5a_         147 -------------------------------------RYENGAFQERALRCFHQLMK------DTTLNWKMVDASKSIEA  183 (209)
T ss_dssp             -------------------------------------TTCSHHHHHHHHHHHHHHTT------CTTSCEEEEETTSCHHH
T ss_pred             -------------------------------------ccccHHHHHHHHHHHHHHHH------hCCCCEEEEECCCCHHH
Confidence                                                 12244445444455544321      11246899999999999


Q ss_pred             HHHHHHHHhccchh
Q 023080          266 SWPKLLEALNLDEY  279 (287)
Q Consensus       266 v~~~I~~~l~~~~~  279 (287)
                      |+++|..++..-..
T Consensus       184 V~~~I~~~v~~~l~  197 (209)
T d1nn5a_         184 VHEDIRVLSEDAIA  197 (209)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988875543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.70  E-value=2.4e-17  Score=131.64  Aligned_cols=109  Identities=18%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      .|+|+|+|||||||+++.||+++|++++++|+++++..      +..+...+..............+...+...     .
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~------g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~-----~   70 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF------NQKVSEIFEQKRENFFREQEQKMADFFSSC-----E   70 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH------TSCHHHHHHHHCHHHHHHHHHHHHHHHTTC-----C
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH------hhhhhhHHHhhhhccchhhhhhhchhhhhc-----c
Confidence            38899999999999999999999999999999987632      222233333222111111122222333322     3


Q ss_pred             cEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          136 GFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       136 g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+|+..- .......   .+...+.+|||++|.+++.+|+..|.
T Consensus        71 ~~v~~~~-g~~~~~~---~l~~~~~vI~L~~s~~~l~~Rl~~~~  110 (161)
T d1viaa_          71 KACIATG-GGFVNVS---NLEKAGFCIYLKADFEYLKKRLDKDE  110 (161)
T ss_dssp             SEEEECC-TTGGGST---TGGGGCEEEEEECCHHHHTTCCCGGG
T ss_pred             ccccccc-cchhhHH---HHHhCCeEEEeccchHHHHHHHcccc
Confidence            4444421 1111111   12235689999999999999986653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.69  E-value=6.2e-17  Score=129.61  Aligned_cols=115  Identities=20%  Similarity=0.253  Sum_probs=73.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      .++++.|+|+|+|||||||+|+.|+++|+ ..+++.+++...........       ...+...........+...+...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~   74 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-------TELDTHIIEEKDEDRLLDFMEPI   74 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHH-------HhhcccchHHHHHHHHHHHHHhh
Confidence            45889999999999999999999999996 56677666655422111111       11122233333333333333333


Q ss_pred             ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          130 QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ... +.+++++++.....+      ...++.+|||+++++++.+|+.+|.
T Consensus        75 i~~-~~~~~~~~~~~~~~~------~~~~~~vI~L~~~~e~l~~Rl~~R~  117 (174)
T d1y63a_          75 MVS-RGNHVVDYHSSELFP------ERWFHMVVVLHTSTEVLFERLTKRQ  117 (174)
T ss_dssp             HTS-SSEEEEECSCCTTSC------GGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             hhh-cccccccHHHHHHHH------HhcCceEEEEECCHHHHHHHHHhCC
Confidence            222 468888887665321      1236789999999999999999885

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=2.4e-16  Score=126.05  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      +|+|+|+|||||||+++.||+++|++++++|+++.+..      |..+.+++.. |.....+.....+...+...     
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~------g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~-----   71 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT------GRSIADIFATDGEQEFRRIEEDVVRAALADH-----   71 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC-----
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh------hhhhhhhhhhhhHHHHHHHHhhhhhhccccc-----
Confidence            47888999999999999999999999999999887632      2222232222 22222233334444444432     


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..++..|........  .........+|||+++++++++|+.++.
T Consensus        72 ~~vi~~gg~~~~~~~--~~~~l~~~~~I~L~~~~~~~~~R~~~~~  114 (165)
T d2iyva1          72 DGVLSLGGGAVTSPG--VRAALAGHTVVYLEISAAEGVRRTGGNT  114 (165)
T ss_dssp             CSEEECCTTGGGSHH--HHHHHTTSCEEEEECCHHHHHHHTTCCC
T ss_pred             ccccccccccccccc--ccccccccceeeeeccchhhhhcccccc
Confidence            456655533222111  1122234568999999999999997653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.67  E-value=3.2e-16  Score=126.96  Aligned_cols=179  Identities=13%  Similarity=0.153  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchH--HHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLS--QQLSEIVNQGKLVSDEIIFNLLSKRLE  127 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~--~~i~~~l~~g~~~~~~~~~~~l~~~l~  127 (287)
                      .+|+|+|+|||||||+++.|+++|+.     .+++.++..+..........  .....................+.....
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHH
Confidence            46788999999999999999999853     35666777766544332211  000000000000000111111222222


Q ss_pred             hcccCCCccEEEeCCCCCHHH-------HHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCC
Q 023080          128 AGQAGGESGFILDGFPRTVKQ-------AEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNG  200 (287)
Q Consensus       128 ~~~~~~~~g~Ildg~p~~~~~-------~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~  200 (287)
                      ...   ..++++|+++....+       ...+.....|+.+|||+++++++.+|+.+|...                   
T Consensus        82 ~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~r~~~-------------------  139 (194)
T d1nksa_          82 AGG---EGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTR-------------------  139 (194)
T ss_dssp             HTC---SSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTT-------------------
T ss_pred             HhC---CCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHHHHHHHHhhhc-------------------
Confidence            221   356777765432111       112223346899999999999999999887522                   


Q ss_pred             CCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          201 NPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       201 ~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                          .+.+...+.+.+++..+..........+.....++.++++++++|++++|.+.|+
T Consensus       140 --------------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         140 --------------------NRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             --------------------CCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             --------------------ccccchHHHHHHHHHHHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence                                2345566777777777766555555555544445556678999999999998874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4.8e-16  Score=129.02  Aligned_cols=171  Identities=17%  Similarity=0.187  Sum_probs=100.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcc-----cHH--------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLV-----SDE--------  116 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~-----~~~--------  116 (287)
                      ++.+|+|.|++||||||+++.|+++|   |+.++...   +  .+.++..++.+.+.+..+...     ...        
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~---~--ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT---R--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   75 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE---E--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEe---c--CCCCccchhhhHHHHhccccccccccchHHHHHHHHH
Confidence            46789999999999999999999987   44332110   0  012233455555544432211     111        


Q ss_pred             ----HHHHHHHHHHHhcccCCCccEEEeCCC----------C--CHHHHHHHHH----hcCccEEEEEecCHHHHHHHHh
Q 023080          117 ----IIFNLLSKRLEAGQAGGESGFILDGFP----------R--TVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCL  176 (287)
Q Consensus       117 ----~~~~~l~~~l~~~~~~~~~g~Ildg~p----------~--~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~  176 (287)
                          .....+...+..     +..+|+|.|.          .  .......+..    ...||++|||++|++++.+|+.
T Consensus        76 ~~~~~~~~~i~~~l~~-----~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~  150 (210)
T d4tmka_          76 ARVQLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR  150 (210)
T ss_dssp             HHHHHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-----CCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhh
Confidence                111122223332     3457777432          1  1222222322    2359999999999999999998


Q ss_pred             CCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEE
Q 023080          177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLE  256 (287)
Q Consensus       177 ~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~  256 (287)
                      +|...-                                      .......+.+++..+.|.+       ++.+...++.
T Consensus       151 ~R~~~~--------------------------------------~~~~~~~~~~~~v~~~y~~-------~~~~~~~~~~  185 (210)
T d4tmka_         151 ARGELD--------------------------------------RIEQESFDFFNRTRARYLE-------LAAQDKSIHT  185 (210)
T ss_dssp             HHSSCC--------------------------------------TTTTSCHHHHHHHHHHHHH-------HHHTCTTEEE
T ss_pred             hccccc--------------------------------------hhhhccHHHHHHHHHHHHH-------HHhcCCCEEE
Confidence            875210                                      0012344555544445533       3344456899


Q ss_pred             EeCCCCcccHHHHHHHHhccch
Q 023080          257 FDLPGGIPESWPKLLEALNLDE  278 (287)
Q Consensus       257 id~~~~~eev~~~I~~~l~~~~  278 (287)
                      ||+++++|+|+++|.+.|....
T Consensus       186 IDa~~~~e~v~~~I~~~i~~~l  207 (210)
T d4tmka_         186 IDATQPLEAVMDAIRTTVTHWV  207 (210)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999887543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.66  E-value=1.2e-15  Score=123.00  Aligned_cols=177  Identities=15%  Similarity=0.157  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG  129 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~  129 (287)
                      .+|+|.|+|||||||+++.|+++|+     +.+++.++..+...........  ...+..................+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD--RDQMRKMDPETQKRIQKMAGRKIAEM   79 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSS--GGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhh--hhhhhhhhchhhHHHHHHHHHHHHHH
Confidence            4799999999999999999999884     3456677877765543221100  00000000000111111122222221


Q ss_pred             ccCCCccEEEeCCCCCHHHH-------HHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCC
Q 023080          130 QAGGESGFILDGFPRTVKQA-------EILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNP  202 (287)
Q Consensus       130 ~~~~~~g~Ildg~p~~~~~~-------~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~  202 (287)
                      ..  +..+++|+++....+.       ..+.....|+.+|||+++++++.+|+.+|...                     
T Consensus        80 ~~--~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~---------------------  136 (190)
T d1khta_          80 AK--ESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETR---------------------  136 (190)
T ss_dssp             HT--TSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSC---------------------
T ss_pred             hC--CCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccc---------------------
Confidence            11  3678999876532111       22233446899999999999999999886421                     


Q ss_pred             CccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          203 SISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       203 ~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                        .+..+..+.++. ...++.........+.....++.+++++++|+++++|.+.|+
T Consensus       137 ------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         137 ------------------VRDLDTASTIEQ-HQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             ------------------SSSCCCHHHHHH-HHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             ------------------cCCcccHHHHHH-HHHHHHHHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence                              223445555543 333333333333334433344556778999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.60  E-value=3.3e-15  Score=118.77  Aligned_cols=116  Identities=20%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      ..|+|+|||||||||+|+.|+++++..++...+.++.................    ......+...+...+..     +
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~   73 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL----ALTWKNITDLTVNFLLA-----Q   73 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHH----HHHHHHHHHHHHHHHHT-----T
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHH----HHHHHHHHHHHHHHHhc-----C
Confidence            46899999999999999999999988876666666654333221111111100    00112223333333332     4


Q ss_pred             ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .++|+|+..........+...     ..+..+++|+++.+++.+|+..|.
T Consensus        74 ~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  123 (176)
T d2bdta1          74 NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (176)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             CCcccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCC
Confidence            789999877665554433322     124567999999999999999885

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.59  E-value=1.2e-14  Score=115.70  Aligned_cols=107  Identities=25%  Similarity=0.323  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE  134 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~  134 (287)
                      |.|+|+|+|||||||+|+.|+++||++++++++.++..........      .........+.+...+......      
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------   72 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDE------EYDCPILDEDRVVDELDNQMRE------   72 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCS------SSSCCCBCHHHHHHHHHHHHHH------
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhH------HhhhhhHHHHHHHHHhhhhhhc------
Confidence            5688999999999999999999999999999999876322111100      0112223334444444433332      


Q ss_pred             ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+..++++.....      .....+.+|||+++++++.+|+..|.
T Consensus        73 ~~~~~~~~~~~~~------~~~~~~~~i~l~~~~~~~~~Rl~~r~  111 (173)
T d1rkba_          73 GGVIVDYHGCDFF------PERWFHIVFVLRTDTNVLYERLETRG  111 (173)
T ss_dssp             CCEEEECSCCTTS------CGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             CCcccchhHHHHH------HHhcCCCcceecCCHHHHHHHHHhcC
Confidence            3556665543311      01135689999999999999999875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.56  E-value=1.1e-14  Score=113.79  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH-hCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF-LGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~-lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      .+|+|+|+|||||||+|+.|.+. .+..+++.+++.+..................   ..........+...+.....  
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--   77 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKE---GIVTGMQFDTAKSILYGGDS--   77 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHH---HHHHHHHHHHHHHHHTSCSS--
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhh---HHHHHHHHHHHHHHHHhhcc--
Confidence            46889999999999999998765 4889999988776543322111100000000   00112333444444444433  


Q ss_pred             CccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCC
Q 023080          134 ESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       134 ~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ...+|+|+..........+..    .+....+|+|++|.+++++|...|.
T Consensus        78 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (152)
T d1ly1a_          78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (152)
T ss_dssp             CCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred             CCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccC
Confidence            357899987777665554443    3346678999999999999999885

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=4.5e-14  Score=115.03  Aligned_cols=121  Identities=13%  Similarity=0.046  Sum_probs=71.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchH---------------HHHHHHHhcCCc---cc
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLS---------------QQLSEIVNQGKL---VS  114 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~---------------~~i~~~l~~g~~---~~  114 (287)
                      .|++|.|+|++||||||+|+.|. .+|++++++|++.+..........               ..+.+.+-....   .-
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            68999999999999999999995 589999999998877554322111               111111110000   00


Q ss_pred             HHHHHHHHHHHHHhc-ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          115 DEIIFNLLSKRLEAG-QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       115 ~~~~~~~l~~~l~~~-~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ...+.......+... .......+|+++.+.....     ....+|.+|++++|.++.++|+.+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~-----~~~~~d~vI~v~a~~e~r~~Rl~~R~  141 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG-----WEGRLHGTLLVAAPLEERVRRVMARS  141 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT-----CGGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeecccccc-----ccccceeEEEEecchhhHHHHHHhcc
Confidence            011111122221111 1111346778864332111     11237899999999999999999884

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.53  E-value=1.1e-13  Score=114.30  Aligned_cols=167  Identities=16%  Similarity=0.178  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccH-------------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD-------------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~-------------------  115 (287)
                      .+|.|+|++||||||+|+.|. .+|++++++|++.++.+..+......+.+.+......++                   
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            578899999999999999996 589999999999988776666555555555433222221                   


Q ss_pred             ----HHHHHHHHHHHHhccc-CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccc
Q 023080          116 ----EIIFNLLSKRLEAGQA-GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNV  190 (287)
Q Consensus       116 ----~~~~~~l~~~l~~~~~-~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~  190 (287)
                          .+++..+...+..... ....-+|+++ |.-.+.    .....+|.+|++++|+++.++|+..|.           
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~ll~e~----~~~~~~d~ii~v~~~~~~r~~R~~~R~-----------  145 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIEN----KLTALCDRILVVDVSPQTQLARSAQRD-----------  145 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTTT----TCGGGCSEEEEEECCHHHHHHHHC--------------
T ss_pred             hHhhcccCHHHHHHHHHHHhhccCCeEEEEe-cccccc----chhhhhhheeeecchHHHHHHHHHhcC-----------
Confidence                2223333333322111 1123466664 332210    111247899999999999999999874           


Q ss_pred             ccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHH
Q 023080          191 ANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL  270 (287)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I  270 (287)
                                                       ..+.+.+..|++....    ..+.-. ... ++|+++++.++..++|
T Consensus       146 ---------------------------------~~s~e~~~~~~~~Q~~----~~~k~~-~aD-~vI~N~~~l~~~~~~l  186 (205)
T d1jjva_         146 ---------------------------------NNNFEQIQRIMNSQVS----QQERLK-WAD-DVINNDAELAQNLPHL  186 (205)
T ss_dssp             -----------------------------------CHHHHHHHHHHSCC----HHHHHH-HCS-EEEECCSCHHHHHHHH
T ss_pred             ---------------------------------CchHHHHHHHHHhCCC----HHHHHH-hCC-EEEECCCChHHHHHHH
Confidence                                             2345666666654321    122222 233 3478888988877777


Q ss_pred             HHHhccc
Q 023080          271 LEALNLD  277 (287)
Q Consensus       271 ~~~l~~~  277 (287)
                      .+.+..-
T Consensus       187 ~~~i~~i  193 (205)
T d1jjva_         187 QQKVLEL  193 (205)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.52  E-value=1.5e-13  Score=114.16  Aligned_cols=41  Identities=27%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREEL   93 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~   93 (287)
                      ++++|+|.|||||||||+|++||++||++|+|+++++|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            45778999999999999999999999999999999999754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.7e-13  Score=113.98  Aligned_cols=177  Identities=14%  Similarity=0.084  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCc-ccHHHHHHHH-HH------
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL-VSDEIIFNLL-SK------  124 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-~~~~~~~~~l-~~------  124 (287)
                      ++++|+|.|+.||||||+++.|++++...+.-+.     ....++..+..+++++..... ..+....-+. ..      
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~-----~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~   76 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLK-----FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   76 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE-----SSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE-----ECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999854433221     012334566677777654332 2222211111 11      


Q ss_pred             HHHhcccCCCccEEEeCCCCC--------------HHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080          125 RLEAGQAGGESGFILDGFPRT--------------VKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN  189 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~--------------~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~  189 (287)
                      .+...... +..+|+|-|..+              ..+...+.. ...||++|||+++++....|..++..+        
T Consensus        77 ~i~~~l~~-g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~--------  147 (214)
T d1tmka_          77 KIKKDLLE-GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE--------  147 (214)
T ss_dssp             HHHHHHHT-TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSS--------
T ss_pred             HHHHHHhc-CCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchh--------
Confidence            11111111 467888854221              122111111 235999999999999888886555311        


Q ss_pred             cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHH
Q 023080          190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWP  268 (287)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~  268 (287)
                                                       .-++.+..++-.+.|.+.......  .....++.||++ .++++|++
T Consensus       148 ---------------------------------~~e~~~~~~~v~~~Y~~l~~~~~~--~~~~~~~iID~s~~~~eev~~  192 (214)
T d1tmka_         148 ---------------------------------RYETVKFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVEA  192 (214)
T ss_dssp             ---------------------------------TTCCHHHHHHHHHHHHHHHHHHHH--TTCTTEEEEECTTCCHHHHHH
T ss_pred             ---------------------------------hhhhHHHHHHHHHHHHHHHHHhhh--hCCCcEEEEECCCCCHHHHHH
Confidence                                             122344444444555543322111  123568889964 68999999


Q ss_pred             HHHHHhccch
Q 023080          269 KLLEALNLDE  278 (287)
Q Consensus       269 ~I~~~l~~~~  278 (287)
                      +|.+.|+...
T Consensus       193 ~I~~~v~~~l  202 (214)
T d1tmka_         193 LIWQIVEPVL  202 (214)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888777543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.49  E-value=2.7e-14  Score=113.93  Aligned_cols=114  Identities=22%  Similarity=0.277  Sum_probs=69.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh-hHHHHHHHHcCCc-----hHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT-GDLVREELASSGS-----LSQQLSEIVNQGKLVSDEIIFNLLSKRL  126 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~-d~llr~~~~~~~~-----~~~~i~~~l~~g~~~~~~~~~~~l~~~l  126 (287)
                      .+.+|+|.|+|||||||+|+.|++++|.+++++ .|.++..+.....     .........       .......+...+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~   75 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI-------MQIAADVAGRYA   75 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHH-------HHHHHHHHHHHH
Confidence            456899999999999999999999999887654 2444443322111     000000000       011112222222


Q ss_pred             HhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080          127 EAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       127 ~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      ..     +..+|+|+..... +...+.....+..+|||+++++++.+|+..|.
T Consensus        76 ~~-----~~~vi~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  122 (176)
T d1zp6a1          76 KE-----GYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRG  122 (176)
T ss_dssp             HT-----SCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred             hc-----CCCeEecccccHH-HHHHHHhcccccccccCCCCHHHHHHHHHhCC
Confidence            22     3678899876543 23334444556778999999999999999885

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.2e-13  Score=108.35  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE   92 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~   92 (287)
                      .|+|+|||||||||+|+.||++||+++++.++.....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~   40 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR   40 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhh
Confidence            4888999999999999999999999999998776653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=4.9e-13  Score=110.59  Aligned_cols=166  Identities=14%  Similarity=0.133  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccH--------------
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVSD--------------  115 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~--------------  115 (287)
                      .+|+|+|++||||||+|+.|. .+|++++++|.+.++.+..+......+.+.+...     ..+..              
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            478899999999999999986 6899999999999987766665555554443321     11221              


Q ss_pred             ----HHHHHHHHHHHHhcc-cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccc
Q 023080          116 ----EIIFNLLSKRLEAGQ-AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNV  190 (287)
Q Consensus       116 ----~~~~~~l~~~l~~~~-~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~  190 (287)
                          .+++..+.+.+.... ......+++++ |.-.+.    .....++.+|++++++++.++|+..|+           
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~-~ll~e~----~~~~~~~~iI~V~a~~e~r~~R~~~R~-----------  146 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVEN----SLYKKANRVLVVDVSPETQLKRTMQRD-----------  146 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTT----TGGGGCSEEEEEECCHHHHHHHHHHHH-----------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceee-eecccc----cccccCCEEEEEeCCHHHHHHHHHHhh-----------
Confidence                122333333332210 11123455554 222110    011237889999999999999999874           


Q ss_pred             ccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHH
Q 023080          191 ANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL  270 (287)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I  270 (287)
                                                       ..+.+.+..++....    +........+  ++|+++++++++..+|
T Consensus       147 ---------------------------------~~~~~~~~~~~~~Q~----~~~~k~~~aD--~vI~N~~~le~l~~~v  187 (208)
T d1vhta_         147 ---------------------------------DVTREHVEQILAAQA----TREARLAVAD--DVIDNNGAPDAIASDV  187 (208)
T ss_dssp             ---------------------------------TCCHHHHHHHHHHSC----CHHHHHHHCS--EEEECSSCTTSHHHHH
T ss_pred             ---------------------------------hhhHHHHHHHHHhCC----CHHHHHHhCC--EEEECCCCHHHHHHHH
Confidence                                             223455555554431    1222223333  4588899999999888


Q ss_pred             HHHhcc
Q 023080          271 LEALNL  276 (287)
Q Consensus       271 ~~~l~~  276 (287)
                      .+.+..
T Consensus       188 ~~l~~~  193 (208)
T d1vhta_         188 ARLHAH  193 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=8e-14  Score=115.57  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=37.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA   94 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~   94 (287)
                      +++|+|.|||||||||+|+.|+++||++|+|+++++|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            44899999999999999999999999999999999998543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.9e-13  Score=107.98  Aligned_cols=102  Identities=16%  Similarity=0.063  Sum_probs=77.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ  130 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~  130 (287)
                      .++|..|+++|+|||||||+|+.|++.+++.+|+.|++...                        ......+...+..  
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~--   64 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ--   64 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT--
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC--
Confidence            34778999999999999999999999999999999776321                        1123444455554  


Q ss_pred             cCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCcc
Q 023080          131 AGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMC  181 (287)
Q Consensus       131 ~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~  181 (287)
                         +..+|+|+...+..+...+...    +..-.+|+|++|.+++++|...|..+
T Consensus        65 ---g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~  116 (172)
T d1yj5a2          65 ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMT  116 (172)
T ss_dssp             ---TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             ---CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhccc
Confidence               3689999988887776665443    23446789999999999999988643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=8.3e-13  Score=108.51  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCccc----HHHHHHHHH----
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS----DEIIFNLLS----  123 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~----~~~~~~~l~----  123 (287)
                      |+|+|.|+.||||||+++.|+++|   |..++-+..     ...+.+.+..+...+..+....    ......+..    
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~-----P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF-----PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-----SCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec-----CCCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            689999999999999999999987   554432200     0012233333333332221110    001100000    


Q ss_pred             ---HHHHhcccCCCccEEEeCCCCCH-----------------HHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCC
Q 023080          124 ---KRLEAGQAGGESGFILDGFPRTV-----------------KQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       124 ---~~l~~~~~~~~~g~Ildg~p~~~-----------------~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                         ......... +..+|+|-+..+.                 .....+...    ..||++|||+++++++.+|+.+|.
T Consensus        76 ~~~~~~~~~~~~-~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~  154 (208)
T d1gsia_          76 GAVHTIQGLCRG-YDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA  154 (208)
T ss_dssp             TTHHHHHHHHHH-SSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHhhh-cccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhh
Confidence               001000111 3567788543211                 111222222    249999999999999999999885

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.33  E-value=2.2e-12  Score=102.35  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh-HHHHHHHHcCCchHHHHHHHHhcCC-ccc-H--HHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG-DLVREELASSGSLSQQLSEIVNQGK-LVS-D--EIIFNLLSKRLEA  128 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d-~llr~~~~~~~~~~~~i~~~l~~g~-~~~-~--~~~~~~l~~~l~~  128 (287)
                      +.+|+|+|+|||||||+|+.|+++++..+++++ +.+....... .........+..+. ... +  ..+...+...+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLK-MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGG-GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcccccc-ccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999998765543 3333321100 00000000001111 110 0  1111122211111


Q ss_pred             cccCCCccEEEeCC-CCCHHHHHHHHHh--cCccEEEEEecCHHHHHHHHhCCC
Q 023080          129 GQAGGESGFILDGF-PRTVKQAEILEEV--MDIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       129 ~~~~~~~g~Ildg~-p~~~~~~~~l~~~--~~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .... ...++++.. .........+...  .....+|+|+++++++.+|...|.
T Consensus        82 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~  134 (178)
T d1qhxa_          82 MARA-GARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHT-TCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHhh-ccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcC
Confidence            1111 345666653 2332222222222  235567999999999999998875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.9e-11  Score=101.04  Aligned_cols=81  Identities=12%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHH
Q 023080          157 DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV  236 (287)
Q Consensus       157 ~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~  236 (287)
                      .||++|||+++++++++|+.+|+...                                       ....+.+.++.-.+.
T Consensus       152 ~Pdl~i~Ld~~pe~~~~Ri~~r~~~~---------------------------------------e~~~~~~yl~~l~~~  192 (241)
T d1p5zb_         152 ELDGIIYLQATPETCLHRIYLRGRNE---------------------------------------EQGIPLEYLEKLHYK  192 (241)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGG---------------------------------------GTTCCHHHHHHHHHH
T ss_pred             CCceeeeeccCHHHHHHHHHhhcchh---------------------------------------hhcCCHHHHHHHHHH
Confidence            59999999999999999998775211                                       001233444433333


Q ss_pred             HHhhchHH----HHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080          237 YNEKSQPV----EEFYRNRGKLLEFDLPGGIPESWPKLLEALNL  276 (287)
Q Consensus       237 y~~~~~~~----~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~  276 (287)
                      |++.....    ...+.....++.||++.++++++++|.+.|+.
T Consensus       193 y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i~~~i~~  236 (241)
T d1p5zb_         193 HESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKE  236 (241)
T ss_dssp             HHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            43321110    00112234688999999999999999998864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.5e-11  Score=101.77  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      |.+|+|.|+.||||||+++.|+++|+-..+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i~   32 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA   32 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCCc
Confidence            7799999999999999999999999766553

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.6e-12  Score=106.13  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC----------CeeehhHHHHHHHHcCCchHHHHHHHHhc-----CCcccHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV----------PHIATGDLVREELASSGSLSQQLSEIVNQ-----GKLVSDEI  117 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~----------~~i~~d~llr~~~~~~~~~~~~i~~~l~~-----g~~~~~~~  117 (287)
                      .|.+|.|.|++||||||+|+.|++.++.          .++++|++.+..     ............     -.....+.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL-----TSEQKAKALKGQFNFDHPDAFDNEL   75 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC-----CHHHHHHHHTTCSCTTSGGGBCHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccccccc-----chhhhhhhhhcccccCCcHHHHHHH
Confidence            4789999999999999999999999864          357776653210     000000000000     01111223


Q ss_pred             HHHHHHHHHHhcc-------------------cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080          118 IFNLLSKRLEAGQ-------------------AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       118 ~~~~l~~~l~~~~-------------------~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      +...+........                   ......+|++|.+.-..  ..+..  .+|+.|||+++.++.++|...|
T Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~--~~l~~--~~D~~i~v~~~~~~~~~R~~~R  151 (213)
T d1uj2a_          76 ILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD--LFQMKLFVDTDADTRLSRRVLR  151 (213)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH--HCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhcc--HHHHh--hhheeeeecCCHHHHHHHHHHH
Confidence            3333333222110                   01134577888654321  11111  2689999999999999998877


Q ss_pred             C
Q 023080          179 R  179 (287)
Q Consensus       179 ~  179 (287)
                      .
T Consensus       152 d  152 (213)
T d1uj2a_         152 D  152 (213)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=1.7e-11  Score=98.71  Aligned_cols=161  Identities=15%  Similarity=0.142  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCC--------chHHHHHHHHhcCCcccHHH--------
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSG--------SLSQQLSEIVNQGKLVSDEI--------  117 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~--------~~~~~i~~~l~~g~~~~~~~--------  117 (287)
                      +.+|+|+||+||||||+++.|.+++.-.+++.....|.. ..+.        .....+......|.++....        
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~-r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP-RPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCC-CccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            357899999999999999999999854444433333221 1110        11245555555555432211        


Q ss_pred             --HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080          118 --IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN  194 (287)
Q Consensus       118 --~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~  194 (287)
                        ....+...+..     +..++++..+..   +..+.... .+..++++..+.+++.+|+.+|.               
T Consensus        81 g~~~~~~~~~~~~-----g~~~i~~~~~~g---~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg---------------  137 (182)
T d1znwa1          81 GTLAQPVRAAAAT-----GVPVLIEVDLAG---ARAIKKTMPEAVTVFLAPPSWQDLQARLIGRG---------------  137 (182)
T ss_dssp             EEEHHHHHHHHHH-----TCCEEEECCHHH---HHHHHHHCTTSEEEEEECSCHHHHHHHHHTTS---------------
T ss_pred             ccccchhhhhhhc-----CCccccccccch---hhhhhhcCcceeEEeeecccHHHHHHHhhhcC---------------
Confidence              11223333333     356777754333   33333333 34444555667899999999884               


Q ss_pred             ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080          195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL  274 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l  274 (287)
                                                   .++.+.+++|++.++...    .++...+ .+.+ + .+.++.+++|.++|
T Consensus       138 -----------------------------~~~~e~I~~Rl~~~~~e~----~~~~~fD-~vI~-N-ddle~a~~~l~~iI  181 (182)
T d1znwa1         138 -----------------------------TETADVIQRRLDTARIEL----AAQGDFD-KVVV-N-RRLESACAELVSLL  181 (182)
T ss_dssp             -----------------------------CSCHHHHHHHHHHHHHHH----HGGGGSS-EEEE-C-SSHHHHHHHHHHHH
T ss_pred             -----------------------------cchHHHHHHHHHHHHHHH----hhHhcCC-EEEE-C-cCHHHHHHHHHHHh
Confidence                                         467889999998876432    2223223 3333 3 37999999988775

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=3.7e-11  Score=97.60  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ..+|++|+|.|+.||||||+++.|+++++...+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~   39 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL   39 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            4588999999999999999999999999765543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=4.8e-11  Score=96.55  Aligned_cols=164  Identities=14%  Similarity=0.148  Sum_probs=97.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCe-eehhHHHHHHHH---cCC----chHHHHHHHHhcCCcccHHH--------HHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPH-IATGDLVREELA---SSG----SLSQQLSEIVNQGKLVSDEI--------IFN  120 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~-i~~d~llr~~~~---~~~----~~~~~i~~~l~~g~~~~~~~--------~~~  120 (287)
                      |+|+||+||||||+++.|++.+...+ +......|..-.   .+.    .....+......|.++....        ...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            88999999999999999999875321 111111111000   000    12345666666776543211        123


Q ss_pred             HHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCC
Q 023080          121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGG  198 (287)
Q Consensus       121 ~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~  198 (287)
                      .+...+..     +..+|+|+.+....   .+....  .+.+++++..+.+++.+|+.+|+                   
T Consensus        84 ~i~~~~~~-----g~~~i~~~~~~~~~---~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg-------------------  136 (186)
T d1gkya_          84 SVKQVSKS-----GKTCILDIDMQGVK---SVKAIPELNARFLFIAPPSVEDLKKRLEGRG-------------------  136 (186)
T ss_dssp             HHHHHHHH-----TSEEEEECCHHHHH---HHHTCGGGCCEEEEEECSCHHHHHHHHHHHS-------------------
T ss_pred             hHHHHhcC-----CCeEEecchHHHHH---HHHHhhcccceEEEecCCcHHHHHHHHHhhc-------------------
Confidence            33333443     35778887654433   333322  35567778889999999998874                   


Q ss_pred             CCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       199 ~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                               .++.+.+.+|+..+.....   ..+......+.+|  .+.++.+.+|.++|..+
T Consensus       137 -------------------------~~~~~~I~~Rl~~~~~e~~---~~~~~~fd~vI~N--~dle~a~~~l~~iI~~e  185 (186)
T d1gkya_         137 -------------------------TETEESINKRLSAAQAELA---YAETGAHDKVIVN--DDLDKAYKELKDFIFAE  185 (186)
T ss_dssp             -------------------------CSCHHHHHHHHHHHHHHHH---HHTTTCSSEEEEC--SSHHHHHHHHHHHHHTC
T ss_pred             -------------------------cchhHHHHHHHHHHHHHHH---hhhhcCCCEEEEC--cCHHHHHHHHHHHHHhc
Confidence                                     4677888889888764322   1121111233343  47999999999988754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=8.7e-11  Score=95.90  Aligned_cols=122  Identities=12%  Similarity=0.152  Sum_probs=66.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA  128 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~  128 (287)
                      |.+|+++|.|||||||+|+.|++.++.     ..++.| .+|...................+...........+...+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG-QYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc-ceehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            678999999999999999999998853     356664 46665543322111000000000000111222222222222


Q ss_pred             cccCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHh
Q 023080          129 GQAGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCL  176 (287)
Q Consensus       129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~  176 (287)
                      ....++..+|+|+......+...+...    ..+.+++.+.++.+.++++..
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI  132 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhH
Confidence            111113568889877776666555443    234566778888777766543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.05  E-value=3.9e-10  Score=92.80  Aligned_cols=113  Identities=19%  Similarity=0.104  Sum_probs=63.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh----CC--CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH--H
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL----GV--PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL--L  122 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l----g~--~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~--l  122 (287)
                      ..++++|.|+|.|||||||+|+.|++++    +.  .+++. |.+|..+...-......+.          +....+  +
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~----------~~~~r~~~~   89 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRN----------ENIRRIAEV   89 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHH----------HHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHH----------HHHHHHHHH
Confidence            3588899999999999999999999765    43  34555 5556544222111111111          111111  1


Q ss_pred             HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHh----------cCccEEEEEecCHHHHHHHHhCC
Q 023080          123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEEV----------MDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~----------~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      ...+...    +..+|++.........+.....          +.+-+.|||+||.+++.+|..++
T Consensus        90 a~~~~~~----g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~  151 (208)
T d1m7ga_          90 AKLFADS----NSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG  151 (208)
T ss_dssp             HHHHHHT----TCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC
T ss_pred             HHHHhcc----CCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc
Confidence            2222222    3567777544433333332221          12346799999999999887654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.5e-10  Score=94.00  Aligned_cols=164  Identities=15%  Similarity=0.142  Sum_probs=92.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCe-eehhHHHHHHHH---cCC----chHHHHHHHHhcCCcccHHH--------HHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPH-IATGDLVREELA---SSG----SLSQQLSEIVNQGKLVSDEI--------IFN  120 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~-i~~d~llr~~~~---~~~----~~~~~i~~~l~~g~~~~~~~--------~~~  120 (287)
                      |+|+||+||||||+++.|++.++..+ .......|..-.   .+.    .....+......|.++....        ...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            88999999999999999999986432 221111111000   000    12345556666666542211        112


Q ss_pred             HHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCC
Q 023080          121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGN  199 (287)
Q Consensus       121 ~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~  199 (287)
                      .+...+..     +..++++..+   .-...+.... .+..++++..+.+++.+|+.+|+                    
T Consensus        83 ~v~~~~~~-----g~~~~~~~~~---~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~--------------------  134 (190)
T d1lvga_          83 AVRAVQAM-----NRICVLDVDL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRN--------------------  134 (190)
T ss_dssp             HHHHHHHT-----TCEEEEECCH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHT--------------------
T ss_pred             hhhhhhcC-----CCceeecchH---hhhhhhhhccccceEEEEecchHHHHHHHHhhcc--------------------
Confidence            22333333     3456666532   2223333322 24345555556789999998764                    


Q ss_pred             CCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcC--cEEEEeCCCCcccHHHHHHHHhccc
Q 023080          200 GNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRG--KLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       200 ~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~--~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                              .++.+.+.+|+..+.....    +....+  .++.++  .+.|+.+++|..+|..+
T Consensus       135 ------------------------~~~~e~i~~rl~~~~~~~~----~~~~~~~fd~iI~N--~dle~a~~~l~~iI~~~  184 (190)
T d1lvga_         135 ------------------------TETEESLAKRLAAARTDME----SSKEPGLFDLVIIN--DDLDKAYATLKQALSEE  184 (190)
T ss_dssp             ------------------------CSCHHHHHHHHHHHHHHTT----GGGSTTTCSEEEEC--SSHHHHHHHHHHHTHHH
T ss_pred             ------------------------ccchHHHHHHHHHHHHHHH----hhhhcCCCCEEEEC--cCHHHHHHHHHHHHHHH
Confidence                                    5678899999988766432    111111  233444  36899999999888855


Q ss_pred             h
Q 023080          278 E  278 (287)
Q Consensus       278 ~  278 (287)
                      .
T Consensus       185 ~  185 (190)
T d1lvga_         185 I  185 (190)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=2.6e-10  Score=93.68  Aligned_cols=165  Identities=14%  Similarity=0.193  Sum_probs=100.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC--CeeehhHHHHHHHHc---CC----chHHHHHHHHhcCCcccHHHH------
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV--PHIATGDLVREELAS---SG----SLSQQLSEIVNQGKLVSDEII------  118 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~--~~i~~d~llr~~~~~---~~----~~~~~i~~~l~~g~~~~~~~~------  118 (287)
                      ++.|+|+||+||||||+.+.|.+.+..  ..+++....|..-..   +.    -....+...+.+|.++....+      
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            567999999999999999999998752  222222222221010   11    124567777888877643221      


Q ss_pred             --HHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhCCCccccCCCccccccccc
Q 023080          119 --FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINV  195 (287)
Q Consensus       119 --~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~  195 (287)
                        ...+...+..     +..+|+|.-+...   ..+..... +-.++++..+.+++.+|+.+|.                
T Consensus        82 t~~~~v~~~~~~-----g~~~ildid~~g~---~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg----------------  137 (205)
T d1s96a_          82 TSREAIEQVLAT-----GVDVFLDIDWQGA---QQIRQKMPHARSIFILPPSKIELDRRLRGRG----------------  137 (205)
T ss_dssp             EEHHHHHHHHTT-----TCEEEEECCHHHH---HHHHHHCTTCEEEEEECSSHHHHHHHHHTTS----------------
T ss_pred             cccchHHHHHhc-----CCceeecCcHHHH---HHHHhhhcccceeeeeccchHHHHHHHHhcC----------------
Confidence              2333333443     4678888654443   33444332 3344556667788999998874                


Q ss_pred             cCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080          196 KGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN  275 (287)
Q Consensus       196 ~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~  275 (287)
                                                  .++++.++.|+........    ++... ..+.+|  .+.++.+.+|.++|.
T Consensus       138 ----------------------------~~~~~~i~~Rl~~a~~E~~----~~~~f-D~vIvN--ddl~~a~~el~~iI~  182 (205)
T d1s96a_         138 ----------------------------QDSEEVIAKRMAQAVAEMS----HYAEY-DYLIVN--DDFDTALTDLKTIIR  182 (205)
T ss_dssp             ----------------------------CSCHHHHHHHHHHHHHHHT----TGGGS-SEEEEC--SSHHHHHHHHHHHHH
T ss_pred             ----------------------------CchHHHHHHHHHHHHHHHH----HHhCC-CEEEEC--cCHHHHHHHHHHHHH
Confidence                                        5567788888887765432    22222 234443  378999999998886


Q ss_pred             cc
Q 023080          276 LD  277 (287)
Q Consensus       276 ~~  277 (287)
                      .+
T Consensus       183 ~e  184 (205)
T d1s96a_         183 AE  184 (205)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.1e-11  Score=95.60  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLV   89 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ll   89 (287)
                      ++++|+|+|+|||||||+|+.|+++++..+++++.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~   54 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   54 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchh
Confidence            7889999999999999999999999977666554433

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.88  E-value=6.9e-09  Score=82.02  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      .+.+|+|+|+|||||||+|+.|+++||.+++..+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            3567999999999999999999999999998763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.87  E-value=4.5e-09  Score=82.80  Aligned_cols=31  Identities=19%  Similarity=0.196  Sum_probs=27.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +.++++|.|+|+|||||||+|+.|+++|+..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~   33 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQ   33 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            4588999999999999999999999998543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.85  E-value=2.1e-09  Score=86.28  Aligned_cols=30  Identities=27%  Similarity=0.207  Sum_probs=26.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      +..|++|.|.|++||||||+|+.|++.++.
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            346888999999999999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.59  E-value=1.8e-08  Score=84.95  Aligned_cols=119  Identities=12%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHcCCchHHHHHHHHhcC----CcccHHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELASSGSLSQQLSEIVNQG----KLVSDEIIFNLLSK  124 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g----~~~~~~~~~~~l~~  124 (287)
                      ...|..|+|.|||||||||+|+.||..++  +..++.|++...    ..............-    ...........+..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ----HPNFDELVKLYEKDVVKHVTPYSNRMTEAIISR  104 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT----STTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH----hccCcccchhhhHHHHHHHHhhccchHHHHHHH
Confidence            34677899999999999999999999984  456777655321    111111111100000    00011122222223


Q ss_pred             HHHhcccCCCccEEEeCCCCCHHHHHHH-HH---hcCccEEEEEecCHHHHHHHHhCC
Q 023080          125 RLEAGQAGGESGFILDGFPRTVKQAEIL-EE---VMDIDLVVNLKLCEDVLLEKCLGR  178 (287)
Q Consensus       125 ~l~~~~~~~~~g~Ildg~p~~~~~~~~l-~~---~~~~d~vi~L~~~~e~l~~Rl~~R  178 (287)
                      .+..     ....++|...........+ ..   .+....+.++..+.+..+.|...|
T Consensus       105 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R  157 (273)
T d1gvnb_         105 LSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER  157 (273)
T ss_dssp             HHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHhh-----CCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcC
Confidence            3332     2466777765554443322 22   222334567888999998888766

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.56  E-value=1.3e-07  Score=82.50  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      -++|+|.|+.||||||+++.|++.++..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3679999999999999999999988643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.55  E-value=3.3e-07  Score=79.98  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +.++|+|.|+.||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            567899999999999999999999884

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.51  E-value=7.3e-07  Score=77.51  Aligned_cols=28  Identities=21%  Similarity=0.127  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ..++|+|.|+.||||||+++.|++.++.
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4467999999999999999999988743

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=3.2e-08  Score=85.61  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLVR   90 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~llr   90 (287)
                      .....|.+|.|.|++||||||+|+.|++.+.       +.+|++|++..
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            4456889999999999999999999999873       34688888863

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.24  E-value=3.8e-07  Score=75.63  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREEL   93 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~   93 (287)
                      .+|+|+|+.||||||+|+.|++++|+++++..|.++..+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            478999999999999999999999999999656555544

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.21  E-value=5.5e-07  Score=76.73  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLV   89 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~ll   89 (287)
                      ++++|.|+|++||||||+++.|.+.+   ++  .+|+.|++.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            45589999999999999999998876   33  478888875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.5e-06  Score=68.95  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .|+|+||+||||||+.+.|.+.+.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCC
Confidence            488899999999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=1.8e-06  Score=71.24  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ..++|.||||+||||+|+.|++.++..++.
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            358899999999999999999999987764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.6e-06  Score=65.86  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++|+|+|++||||||+++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368999999999999999999876

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.93  E-value=3.3e-06  Score=69.61  Aligned_cols=32  Identities=34%  Similarity=0.462  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +..++|.||||+||||+|+.|++.+++.+..+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            34588999999999999999999999876554

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=3.1e-06  Score=72.03  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh--------CCCeeehhHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL--------GVPHIATGDLV   89 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l--------g~~~i~~d~ll   89 (287)
                      ..+|.+|.|.|++||||||+|..|.+.+        .+.++++|++.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            3478899999999999999998876554        34568999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.91  E-value=3.8e-06  Score=70.04  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ++.-|+|.||||||||++|+.||+.+|++++.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            345689999999999999999999999988765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.90  E-value=3.2e-06  Score=66.08  Aligned_cols=27  Identities=33%  Similarity=0.583  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      |+|+|+||+||||||+++.|+..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            579999999999999999999988643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=4.6e-06  Score=69.99  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .|.-|+|.||||||||++++.||+.++.+++.+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i   76 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEE
Confidence            456689999999999999999999999987654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=4.6e-06  Score=69.62  Aligned_cols=37  Identities=32%  Similarity=0.455  Sum_probs=30.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLV   89 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~ll   89 (287)
                      .|.-|+|.||||||||++++.|++.+|++++.+  .+++
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~   79 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   79 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhh
Confidence            455689999999999999999999999988654  4544

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.83  E-value=5e-06  Score=71.65  Aligned_cols=32  Identities=34%  Similarity=0.536  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      +|..|+|.||||||||++|+.||+.++.+++.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~   79 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   79 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhc
Confidence            34457899999999999999999999876543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=7.3e-06  Score=67.83  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ....++|.||||+||||+++.||+.++..++.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhhc
Confidence            44568899999999999999999999877653

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=3.6e-05  Score=61.79  Aligned_cols=158  Identities=12%  Similarity=0.053  Sum_probs=85.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCe-eehhHHHHHHH---HcCCc-----hHHHHHHHHhcCCcccHHH--------HH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGVPH-IATGDLVREEL---ASSGS-----LSQQLSEIVNQGKLVSDEI--------IF  119 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~~~-i~~d~llr~~~---~~~~~-----~~~~i~~~l~~g~~~~~~~--------~~  119 (287)
                      |+|+||   ||+|+.++|.+.+.-.+ ..+....|..-   ..+..     ....+...+..|.++....        ..
T Consensus        12 ivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~YGt~~   88 (199)
T d1kjwa2          12 IIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSV   88 (199)
T ss_dssp             EEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCccceee
Confidence            666776   69999999999875321 21111122100   00000     1234666666666543211        12


Q ss_pred             HHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCC
Q 023080          120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGN  199 (287)
Q Consensus       120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~  199 (287)
                      ..+...+..     ++.+|+|.-+....+   +......-++|||..|.-..+.|+.+|                     
T Consensus        89 ~~i~~~~~~-----gk~~lldid~~g~~~---lk~~~~~~i~IfI~pps~e~l~~l~kr---------------------  139 (199)
T d1kjwa2          89 QSVREVAEQ-----GKHCILDVSANAVRR---LQAAHLHPIAIFIRPRSLENVLEINKR---------------------  139 (199)
T ss_dssp             HHHHHHHHT-----TCEEEECCCTTHHHH---HHHTTCCCEEEEECCSSHHHHHHHCTT---------------------
T ss_pred             eEEEehhcC-----CCcccccccchHHhh---hhhhccceeEEeeccccHHHHHhhhcc---------------------
Confidence            334444444     467888876555443   333333346788887765555665444                     


Q ss_pred             CCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080          200 GNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD  277 (287)
Q Consensus       200 ~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~  277 (287)
                                               .+++.+++|++...+....    +......+.++  .+.++.+.+|.++|...
T Consensus       140 -------------------------~~~~~i~~r~~~~~~~e~~----~~~~fd~vI~N--ddle~a~~~l~~iI~~~  186 (199)
T d1kjwa2         140 -------------------------ITEEQARKAFDRATKLEQE----FTECFSAIVEG--DSFEEIYHKVKRVIEDL  186 (199)
T ss_dssp             -------------------------SCHHHHHHHHHHHHHHHHH----HGGGCSEEECC--SSHHHHHHHHHHHHHHH
T ss_pred             -------------------------ccHHHHHHHHHHHHHHHHH----hhccCCEEEEC--cCHHHHHHHHHHHHHHh
Confidence                                     2356677777665443332    33222233333  47899999999988754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=9.1e-06  Score=63.17  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .|+|+|+|||||||+++.+++.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            58899999999999999999887

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=1e-05  Score=73.02  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .|..|+|+||+|||||.+|+.||+.+++|++.+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            456899999999999999999999999998754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.5e-05  Score=67.02  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+.-|+|.||||||||++++.||..+|++++.+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~   72 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI   72 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEE
Confidence            455689999999999999999999999987665

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.7e-05  Score=66.36  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .|.-|+|.||||||||++++.+|..++.+++.+
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            445689999999999999999999999887765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.56  E-value=2.7e-05  Score=68.38  Aligned_cols=33  Identities=27%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      .+..++|.||||+|||++|+.|++.+|..++++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            445789999999999999999999999999875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=3.6e-05  Score=62.43  Aligned_cols=29  Identities=28%  Similarity=0.521  Sum_probs=25.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.+|.+|+|+||+|+||||.+..||.++
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578889999999999999999999876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.49  E-value=3.5e-05  Score=63.68  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ..+..++|.||||+||||+++.|++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4566799999999999999999999873

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.48  E-value=3.3e-05  Score=63.03  Aligned_cols=26  Identities=42%  Similarity=0.456  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ..++|.||||+||||+++.|++.++.
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            35889999999999999999998743

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.46  E-value=4.5e-05  Score=61.60  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+++|.+|+|+||+||||||.+..||.++
T Consensus         2 ~~~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           2 VEPKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CCCSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34577889999999999999999999876

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=3.8e-05  Score=59.38  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +|.|+|++||||||+...|..+|
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            56799999999999999998876

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.43  E-value=4.4e-05  Score=61.86  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=21.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.+.|.+|+|.||+|+||||.+..||.++
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578889999999999999999999876

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.34  E-value=6.1e-05  Score=61.39  Aligned_cols=24  Identities=33%  Similarity=0.668  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++|+|+|++||||||+.++|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            578999999999999999998765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.34  E-value=9.2e-05  Score=59.73  Aligned_cols=30  Identities=27%  Similarity=0.504  Sum_probs=25.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |....+.+|+|.||+|+||||.+..||.++
T Consensus         5 p~~~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           5 PVLKDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CCCCSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            444566778999999999999999999876

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=8.5e-05  Score=63.84  Aligned_cols=31  Identities=35%  Similarity=0.524  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      ..++|+||+|+|||.+|+.||+.++.+++.+
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~   83 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRF   83 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEe
Confidence            3688999999999999999999998776533

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.32  E-value=0.003  Score=44.59  Aligned_cols=98  Identities=27%  Similarity=0.300  Sum_probs=64.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES  135 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~  135 (287)
                      .|++.||..|=|||++..|++.+.++.|.-..+--.                ..|    .+-+..-+ +.+..     ..
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfela----------------ksg----neklfehf-nklad-----ed   55 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA----------------KSG----NEKLFEHF-NKLAD-----ED   55 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHH----------------HHC----HHHHHHHH-HHHTT-----CC
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhh----------------hcc----CHHHHHHH-Hhhcc-----cc
Confidence            588999999999999999999999998854322100                001    01111111 11222     25


Q ss_pred             cEEEeCC---------------CCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCC
Q 023080          136 GFILDGF---------------PRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRR  179 (287)
Q Consensus       136 g~Ildg~---------------p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~  179 (287)
                      .+|+|.|               ..+..|.+.++... ...-+|||.+++.++.+|+.-|+
T Consensus        56 nviidrfvysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrg  115 (164)
T d2axpa1          56 NVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG  115 (164)
T ss_dssp             SEEEESCHHHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHT
T ss_pred             ceeeehhhhhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhcccc
Confidence            6777753               24667777766533 34568999999999999998774

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=5.3e-05  Score=61.48  Aligned_cols=26  Identities=31%  Similarity=0.378  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .++|.||||+||||+|+.|++.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcc
Confidence            47899999999999999999987653

>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.25  E-value=4.4e-05  Score=41.22  Aligned_cols=29  Identities=31%  Similarity=0.565  Sum_probs=23.6

Q ss_pred             CCCccccCCCccccccccccCCCCCCCccCCCCCCCc--ccccccccC
Q 023080          177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA--HCMSKLITR  222 (287)
Q Consensus       177 ~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~L~~r  222 (287)
                      +|+++|.||.+||+.                 |.||+  ++..||++|
T Consensus         1 GRR~DP~TG~iYH~~-----------------f~ppp~~ei~~RLvqr   31 (31)
T d1zaka2           1 GRRLDPVTGKIYHLK-----------------YSPPENEEIASRLTQR   31 (31)
T ss_dssp             TEEECTTTCCEEESS-----------------SSCCCSSGGGGGCBCC
T ss_pred             CCcCCCCCCcEeEEe-----------------cCCCCCHHHHHHHhcC
Confidence            467899999999995                 66776  678899875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=8.1e-05  Score=60.52  Aligned_cols=23  Identities=39%  Similarity=0.584  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++|.||||+||||+++.|++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            47899999999999999999975

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00012  Score=59.07  Aligned_cols=28  Identities=25%  Similarity=0.411  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+|.+|+|+||+|+||||.+..||.++
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999999776

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.20  E-value=5.6e-05  Score=62.75  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..++|.||||+||||+++.+++.+
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHH
Confidence            345668999999999999999986

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=9e-05  Score=60.83  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..++|.||||+||||+++.+++.+
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            358899999999999999999987

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00011  Score=59.46  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .++|.||||+||||+++.|++.++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhc
Confidence            3779999999999999999998643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=0.00015  Score=63.48  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=28.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA   84 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~   84 (287)
                      ..++..|+|+||+|+|||-+|+.||+.++.+++-
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir   98 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI   98 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhcccceee
Confidence            3455679999999999999999999998777553

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.00028  Score=54.15  Aligned_cols=30  Identities=20%  Similarity=0.280  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .++.+|++.|.-||||||+++.+++.+|..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            356789999999999999999999999874

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.01  E-value=0.00033  Score=56.95  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-.++|.|+||||||++|..++...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55678999999999999999999875

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00012  Score=41.95  Aligned_cols=32  Identities=28%  Similarity=0.530  Sum_probs=26.1

Q ss_pred             CCCccccCCCccccccccccCCCCCCCccCCCCCCCc------ccccccccCCCC
Q 023080          177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITRADD  225 (287)
Q Consensus       177 ~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~L~~r~~d  225 (287)
                      +|++++.||+.||+.                 |+||.      .|+..|++|.||
T Consensus         1 GRr~C~~cG~~Yh~~-----------------~~ppk~~g~CD~cg~~L~qR~DD   38 (38)
T d1akya2           1 GRLIHPASGRSYHKI-----------------FNPPKEDMKDDVTGEALVQRSDD   38 (38)
T ss_dssp             TEEECTTTCCEEETT-----------------TBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             CccCCcCccchhhhh-----------------ccCcCcCCccCCCCCEeeecCCC
Confidence            478899999999995                 56664      578899999886

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.93  E-value=0.00027  Score=53.27  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++|+|+|+|||||||+.++|..
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00028  Score=60.82  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+..+|.|+|+||+||||+...|...+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999998776

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.89  E-value=0.00023  Score=61.07  Aligned_cols=29  Identities=21%  Similarity=0.186  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC--CCeee
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG--VPHIA   84 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg--~~~i~   84 (287)
                      .+++.||||+|||.+++.||...|  .++++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~  155 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYAT  155 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEE
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEE
Confidence            345589999999999999999975  44444

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.82  E-value=0.00038  Score=59.87  Aligned_cols=28  Identities=36%  Similarity=0.567  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+..+|.|+|+||+||||+...|.+.+
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3477899999999999999999999865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0004  Score=53.73  Aligned_cols=28  Identities=25%  Similarity=0.461  Sum_probs=24.0

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      |++.+...|+|+|.+|+||||+.++|..
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHh
Confidence            4555778999999999999999998875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.80  E-value=0.00046  Score=56.63  Aligned_cols=28  Identities=21%  Similarity=0.146  Sum_probs=24.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      ..++|.|++|+||||+++.+++..+..+
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            4688999999999999999999887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.78  E-value=0.00047  Score=53.12  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=23.1

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      .++.+.+.|+|+|.+|+||||+.++|.
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHh
Confidence            344577899999999999999999884

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0004  Score=56.75  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||+||||||+.++|+--+
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            55689999999999999999997543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.66  E-value=0.00044  Score=56.45  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||+||||||+.+.|+--+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCC
Confidence            55689999999999999999997643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.65  E-value=0.00049  Score=52.94  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++..+|+|+|.+|+||||+..+|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5677899999999999999998853

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.62  E-value=0.00074  Score=51.02  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+.++|+|+|.||+||||+.++|..
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhC
Confidence            3557899999999999999998865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.61  E-value=0.00053  Score=56.27  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +++|+||.||||||+.+.|+--+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67799999999999999998654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.61  E-value=0.00047  Score=57.15  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+++.|+.-+
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            55689999999999999999997655

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00049  Score=56.55  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||+||||||+.+.|+--.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            55689999999999999999997543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00058  Score=53.67  Aligned_cols=26  Identities=15%  Similarity=0.029  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +...+.|.|+|||||||+|..|+...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00049  Score=56.61  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++-+++|+|++||||||+.+.|..-+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            556899999999999999999987663

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.59  E-value=0.00055  Score=56.34  Aligned_cols=26  Identities=38%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|+.-+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            56689999999999999999998655

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.58  E-value=0.00066  Score=51.73  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.++|+|+|++||||||+.++|..
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcC
Confidence            346899999999999999998854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.58  E-value=0.00066  Score=55.68  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-++.|+||+||||||+.+.|+--+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            55689999999999999999998654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00074  Score=55.13  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      |..++|.||||+||||+|+.+++.++.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            445889999999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.55  E-value=0.00067  Score=55.68  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||+||||||+.+.|+--+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45589999999999999999997644

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00089  Score=57.24  Aligned_cols=27  Identities=41%  Similarity=0.700  Sum_probs=23.3

Q ss_pred             CCCe-EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNV-QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~-~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+|. .++|.||+|+|||.+|+.||+.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            3444 67889999999999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0007  Score=56.00  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+|++||||||+.+.|..-+
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            55689999999999999999998765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.001  Score=53.14  Aligned_cols=28  Identities=21%  Similarity=0.375  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .|-.++|.||+|+||||+++.+++.+..
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            3445889999999999999999998743

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.46  E-value=0.00084  Score=52.38  Aligned_cols=32  Identities=31%  Similarity=0.339  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      ..-|+|.|++|+||||++-.|.++ |...++-|
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD   45 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLIADD   45 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecC
Confidence            445899999999999999999875 87777653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.45  E-value=0.00092  Score=51.28  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +-++|+|+|.|||||||+..+|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            447899999999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.44  E-value=0.00056  Score=55.75  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-++.|+||+||||||+.+.|+--+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            55689999999999999999998654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.43  E-value=0.00063  Score=54.31  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|.||.||||||+.+.|+..+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            45578999999999999999997654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.0014  Score=50.76  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=23.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      |.....++|+|+|.+|+||||+..+|..
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3344678999999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.00095  Score=56.12  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-+++|+||.||||||+.+.|+-.+
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            55689999999999999999998655

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.0013  Score=51.56  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La   75 (287)
                      +.|+|+|.||+||||+.+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            469999999999999999996

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.33  E-value=0.00054  Score=56.27  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||+||||||+.+.|+--+
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            55689999999999999999998644

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.31  E-value=0.00058  Score=58.63  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++|.|+||+||||+++.|+.-+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            58999999999999999999866

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.28  E-value=0.001  Score=55.17  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.-++.|+|++||||||+++.|+--
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            5568999999999999999999753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0016  Score=51.56  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...++|+|+||+|||++++.||.+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            3468899999999999999999875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.26  E-value=0.0022  Score=51.45  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=27.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHH
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVRE   91 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~   91 (287)
                      ++|.|++|||||.+++.++..+     .+.+++..++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   78 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH
Confidence            7799999999999999999876     3446666666544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.0013  Score=49.14  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +|+|+|+||+||||+..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.00088  Score=51.61  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=23.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      |....+.|+|+|.|++||||+.++|..
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            355778999999999999999998854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.22  E-value=0.001  Score=51.90  Aligned_cols=32  Identities=22%  Similarity=0.275  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      ..-|+|.|++|+||||++-.|.++ |...++-|
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD   46 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK-NHLFVGDD   46 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence            445889999999999999999865 87776654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0014  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .++|+|+|.+|+||||+.++|..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999998875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.20  E-value=0.00068  Score=56.20  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++-+++|+|++||||||+.+.|..-+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            556899999999999999999976553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0016  Score=49.14  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++.|+|+|.|++||||+.++|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            36799999999999999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.15  E-value=0.0016  Score=50.43  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG   86 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d   86 (287)
                      ...-|+|.|++|+||||++-.|.++ |...++-|
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD   46 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD   46 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCC
Confidence            3456899999999999999988876 77766553

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.001  Score=53.47  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...+.|.|+|||||||+|-.++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5668899999999999999988753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.13  E-value=0.0016  Score=52.83  Aligned_cols=27  Identities=22%  Similarity=0.261  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.-.++|.|+|||||||+|-.++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356688999999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.13  E-value=0.0018  Score=49.29  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.|+|+|++|+||||+..+|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999865

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.08  E-value=0.00049  Score=39.07  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=24.2

Q ss_pred             CCccccCCCccccccccccCCCCCCCccCCCCCCCc------ccccccccCCC
Q 023080          178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITRAD  224 (287)
Q Consensus       178 R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~L~~r~~  224 (287)
                      |++++.||+.||+.                 |+||.      .|+..|++|.|
T Consensus         2 R~vc~~cG~~Yh~~-----------------~~pPk~~g~CD~cg~~L~qR~D   37 (37)
T d2ak3a2           2 RWIHPGSGRVYNIE-----------------FNPPKTMGIDDLTGEPLVQRED   37 (37)
T ss_dssp             EEEETTTTEEEETT-----------------TBCCSSTTBCTTTCCBCBCCGG
T ss_pred             ceeeCCcCChhhhc-----------------cCCccccCCccCCCCcCEecCC
Confidence            67899999999995                 56663      57888998864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.06  E-value=0.002  Score=49.31  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..|+|+|.+|+||||+..+|...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            46999999999999999998753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0024  Score=51.58  Aligned_cols=26  Identities=15%  Similarity=0.018  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++...++|.|+||||||++|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46678999999999999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0019  Score=50.76  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .|+|+|+||+||||+..+|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.99  E-value=0.0017  Score=53.27  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||.||||||+.+.|+--+
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55689999999999999999997654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0021  Score=49.93  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+|+|.|.+|+||||+.++|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4699999999999999998864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.002  Score=49.23  Aligned_cols=21  Identities=38%  Similarity=0.604  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .|+|+|.+|+||||+.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999963

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0025  Score=46.19  Aligned_cols=28  Identities=11%  Similarity=0.057  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++...|+|+|-+||||+|+|+.|...+
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3477899999999999999999998776

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.0024  Score=48.94  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++|+|+|.+|+||||+..+|..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            4689999999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0024  Score=48.82  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..|+|+|.+|+||||+.++|...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999999763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0026  Score=48.84  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+.+++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4689999999999999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.87  E-value=0.0019  Score=49.54  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+.+.|+|+|.+|+||||+.++|..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            3567899999999999999998853

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0026  Score=48.79  Aligned_cols=22  Identities=18%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++|+|+|.+|+||||+.++|..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5699999999999999999864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0026  Score=48.35  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.|+++|.+|+||||+.++|..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0029  Score=52.58  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...++|+|+||+|||++++.||.+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            3468899999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0028  Score=48.71  Aligned_cols=22  Identities=36%  Similarity=0.661  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.|+|+|.+|+||||+.++|..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998865

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.84  E-value=0.0021  Score=53.09  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|+||.||||||+.+.|+-.+
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            55689999999999999999997654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0022  Score=51.82  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++++|+|..||||||+.++|.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            568899999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0026  Score=49.23  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++...|+|+|.+|+||||+.++|...
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            35678999999999999999998753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0025  Score=48.54  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.++|..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            446799999999999999999865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0028  Score=48.00  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      -..|+|+|.+|+||||+.+++..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            35699999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.81  E-value=0.0023  Score=52.31  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-++.|.||.||||||+.+.|+-.+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            55688999999999999999998655

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0028  Score=48.19  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+||||+.++|...
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            3467999999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.80  E-value=0.0024  Score=49.35  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      ..+...|+|+|.+|+||||+.++|.
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHh
Confidence            3467889999999999999998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0032  Score=48.15  Aligned_cols=24  Identities=25%  Similarity=0.446  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.+++..
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            446799999999999999999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0021  Score=52.30  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++-++.|+||.||||||+.+.|+-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            556899999999999999999975

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0031  Score=49.72  Aligned_cols=22  Identities=27%  Similarity=0.221  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .|+|+|+|||||||+.++|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0035  Score=47.62  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+|+|+|.+|+||||+.++|..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.68  E-value=0.0026  Score=48.97  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      -|+|+|.||+||||+.+.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999964

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.63  E-value=0.0036  Score=49.62  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT   85 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~   85 (287)
                      +...|+|.|||++|||+++..|.+-++..+++.
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            446789999999999999999999987666554

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.61  E-value=0.0038  Score=48.27  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++|+|+|.+|+||||+.++|..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.004  Score=47.34  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .+|+|+|.+|+||||+.+++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.60  E-value=0.0031  Score=47.97  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|.+|+||||+.++|..
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            346799999999999999999875

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.019  Score=45.23  Aligned_cols=26  Identities=8%  Similarity=0.063  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .+..++|.|++|+||||+|..|++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999999865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0039  Score=48.81  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+..+|..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            4689999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.56  E-value=0.0038  Score=49.94  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++.-+++|.|+||+||||++..++...
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.55  E-value=0.0032  Score=50.14  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +++..++|.|+||+|||++|..++.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3667899999999999999977653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.53  E-value=0.0048  Score=51.38  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...+|+|.|+.|.||||+|+.+..+
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3457889999999999999998765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.50  E-value=0.0039  Score=47.90  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .|+|+|.+|+||||+.++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0045  Score=47.37  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+..+|..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.49  E-value=0.0025  Score=54.50  Aligned_cols=109  Identities=15%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG  133 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~  133 (287)
                      .|+|+|++||||||+.+.|....+  ...+.+.+...-.+......    .. +..+..+   ....++...+...    
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~----~~-~~~~~~~---~~~~ll~~~lR~~----  235 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNY----TQ-LFFGGNI---TSADCLKSCLRMR----  235 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSE----EE-EECBTTB---CHHHHHHHHTTSC----
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhccccccc----ce-eccccch---hHHHHHHHHhccC----
Confidence            489999999999999999987663  23333322110000000000    00 0111111   1234444444442    


Q ss_pred             CccEEEeCCCCCHHHHHHHHHhc--CccEEEEEec-CHHHHHHHHhC
Q 023080          134 ESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKL-CEDVLLEKCLG  177 (287)
Q Consensus       134 ~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~-~~e~l~~Rl~~  177 (287)
                       ..+|+=|--+..+-...++...  ..-.+--+++ +....+.|+..
T Consensus       236 -pd~iivgEiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~  281 (323)
T d1g6oa_         236 -PDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN  281 (323)
T ss_dssp             -CSEEEESCCCSTHHHHHHHHHHTTCSCEEEEECCSSHHHHHHHHHH
T ss_pred             -CCcccCCccCchhHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHH
Confidence             3455556556655445554432  2334555665 44677777754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0045  Score=47.01  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +...|+|+|.+|+|||++.+++...
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4467999999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0048  Score=47.03  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+|||++.+++..
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999876

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0051  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+.+++..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0053  Score=47.11  Aligned_cols=24  Identities=25%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +.++|+|+|.+|+||||+.++|..
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            346899999999999999998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0047  Score=46.99  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+..+|..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0044  Score=47.36  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +|+|+|.|++||||+.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999964

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0054  Score=46.49  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+..+|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0054  Score=46.72  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+..+|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.0058  Score=46.49  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+.|+|+|.+|+||||+.+++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            367999999999999999988653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.29  E-value=0.0015  Score=49.29  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.|+|+|.|++||||+.++|...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0056  Score=47.57  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRL   74 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~L   74 (287)
                      |-..|+|.|.+||||||+..++
T Consensus         1 r~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHH
Confidence            3467999999999999999998

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0019  Score=36.12  Aligned_cols=29  Identities=34%  Similarity=0.573  Sum_probs=22.2

Q ss_pred             CCCccccCCCccccccccccCCCCCCCccCCCCCCCc------ccccccccC
Q 023080          177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITR  222 (287)
Q Consensus       177 ~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~L~~r  222 (287)
                      .|++++.||+.||+.                 |+||.      .|++.|++|
T Consensus         1 GRr~c~~cG~~Yh~~-----------------~~PPk~~g~CD~cg~~L~qR   35 (35)
T d1e4va2           1 GRRVHAPSGRVYHVK-----------------FNPPKVEGKDDVTGEELTTR   35 (35)
T ss_dssp             TEEEETTTTEEEETT-----------------TBCCSSTTBCTTTCCBCBCC
T ss_pred             CccCCcCcCChhhhc-----------------cCccccCCcccCCCCEeecC
Confidence            478899999999995                 56663      567777765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0054  Score=46.70  Aligned_cols=21  Identities=38%  Similarity=0.687  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .|+|+|.+|+||||+.++|..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            589999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0056  Score=46.19  Aligned_cols=21  Identities=38%  Similarity=0.580  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +|+|+|.+|+||||+.++|..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0059  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..|+|+|.+|+||||+..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46889999999999999988753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.23  E-value=0.0055  Score=50.42  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..++.|+|+|.+|+||||+.+.|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            4668999999999999999999964

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.18  E-value=0.0038  Score=48.25  Aligned_cols=21  Identities=38%  Similarity=0.506  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .|.|+|+|++||||+.++|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999853

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0044  Score=48.06  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....|+|+|.+|+||||+..+|..
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhh
Confidence            446799999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.10  E-value=0.0068  Score=46.13  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+.+++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.05  E-value=0.0082  Score=49.39  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .++-.++|.|+||+||||++..++-.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            35668999999999999999888754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0072  Score=52.31  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=17.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRL   74 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~L   74 (287)
                      ..+.+|.||||+||||+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            447889999999999887544

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0067  Score=46.37  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+.+++..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998863

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0042  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=9.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+.++|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.97  E-value=0.0044  Score=47.66  Aligned_cols=20  Identities=20%  Similarity=0.503  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 023080           57 WVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~   76 (287)
                      |.|+|.|++||||+.++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999853

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.95  E-value=0.008  Score=46.32  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      +.|+|+|.+|+|||++.+++...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999988763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.90  E-value=0.0092  Score=47.95  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |+++|+|+|.+.+||||+...|....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            66679999999999999999997643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.90  E-value=0.0066  Score=50.42  Aligned_cols=15  Identities=27%  Similarity=0.355  Sum_probs=12.4

Q ss_pred             EEEEcCCCCCHHHHH
Q 023080           57 WVFLGCPGVGKGTYA   71 (287)
Q Consensus        57 Ivi~G~pGSGKTTla   71 (287)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            567899999999764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0067  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ...|+|+|.+|+|||++..++..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999998875

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.013  Score=48.43  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATG   86 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d   86 (287)
                      ..|.+|++.|.=|+||||++..||..+   |..  .+++|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            356688899999999999888888776   443  45654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.71  E-value=0.01  Score=45.16  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+++|.+|+||||+.+++..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999998875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.69  E-value=0.0088  Score=50.13  Aligned_cols=15  Identities=20%  Similarity=0.346  Sum_probs=12.6

Q ss_pred             EEEEcCCCCCHHHHH
Q 023080           57 WVFLGCPGVGKGTYA   71 (287)
Q Consensus        57 Ivi~G~pGSGKTTla   71 (287)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            667899999999764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.0096  Score=47.98  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ....+|+|++|+||||+.+.|..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCCHHHHHHhhcc
Confidence            45788999999999999999853

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.54  E-value=0.012  Score=51.69  Aligned_cols=26  Identities=23%  Similarity=0.087  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      .-.|+|+||.||||||....+-+.++
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhc
Confidence            34688999999999988888877663

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0065  Score=46.37  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|+|+|.+|+||||+..+|..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999988754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.48  E-value=0.011  Score=45.58  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|.|+|.|.+||||+.++|..
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            446799999999999999999964

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.42  E-value=0.016  Score=42.24  Aligned_cols=29  Identities=17%  Similarity=-0.005  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      .-...+|.+|.|||||+++-.+....|..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            34566889999999999987776666644

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.36  E-value=0.0097  Score=51.99  Aligned_cols=23  Identities=35%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++|+|+||+|||+++..||.+.
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHH
Confidence            45788999999999999999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.015  Score=44.71  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      -..|+++|.+|+||||+..++..
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999998865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.015  Score=47.60  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ..+.+|.|+||+||||++-.||..+
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999998763

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.16  E-value=0.018  Score=47.65  Aligned_cols=30  Identities=13%  Similarity=0.149  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      ++...++|.||+++||||++..|.+-+|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            355678899999999999999999988653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.15  E-value=0.015  Score=46.05  Aligned_cols=27  Identities=22%  Similarity=0.197  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      ++..|+++|-+++|||||..+|....|
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            447899999999999999999965443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.15  E-value=0.014  Score=46.56  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..|+|+|.+|+||||+.+++...
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.12  E-value=0.015  Score=44.74  Aligned_cols=25  Identities=20%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      -+.|+|+|..|+||||+..++....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3679999999999999999997653

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.12  E-value=0.0056  Score=34.08  Aligned_cols=15  Identities=40%  Similarity=1.263  Sum_probs=13.0

Q ss_pred             CCCccccCCCccccc
Q 023080          177 GRRMCSQCGGNFNVA  191 (287)
Q Consensus       177 ~R~~~~~~g~~y~~~  191 (287)
                      .|++++.||+.||+.
T Consensus         1 GRr~C~~CG~~Yh~~   15 (35)
T d1zina2           1 GRRICRNCGATYHLI   15 (35)
T ss_dssp             TEEEETTTCCEEETT
T ss_pred             CccCCcCcCchhccc
Confidence            477899999999995

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.018  Score=47.46  Aligned_cols=27  Identities=15%  Similarity=0.006  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++..++.|.|+|||||||+|-.++...
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            356688899999999999999988765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.034  Score=45.49  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--Ceeehh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATG   86 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d   86 (287)
                      ...+|++.|.=|+||||++-.||..+   |.  ..++.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            55678889999999999988887766   43  345554

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=93.68  E-value=0.0077  Score=33.50  Aligned_cols=15  Identities=40%  Similarity=1.185  Sum_probs=13.0

Q ss_pred             CCCccccCCCccccc
Q 023080          177 GRRMCSQCGGNFNVA  191 (287)
Q Consensus       177 ~R~~~~~~g~~y~~~  191 (287)
                      +|++++.||+.||+.
T Consensus         1 GR~~C~~CG~~Yh~~   15 (35)
T d1s3ga2           1 GRRICKVCGTSYHLL   15 (35)
T ss_dssp             SEEEETTTCCEEETT
T ss_pred             CccCCcCcCchhccc
Confidence            477899999999995

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.60  E-value=0.023  Score=43.46  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      -..|+|+|..|+||||+.++|...
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            357999999999999999998654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.032  Score=43.51  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=21.0

Q ss_pred             eEEEEEcC-CCCCHHHHHHHHHHHh
Q 023080           55 VQWVFLGC-PGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~G~-pGSGKTTla~~La~~l   78 (287)
                      .+++|+|- +|+||||++-.||..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            46889999 4999999999998876

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.02  Score=50.10  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      ..|+.|+|+|.||+||||+.+.|.
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh
Confidence            357899999999999999999995

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.48  E-value=0.021  Score=46.49  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q 023080           57 WVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |+|.|++||||+++|+.|....
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            7889999999999999998653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.09  E-value=0.0095  Score=48.18  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ++...+|+|++|+||||+.+.|..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             ccceEEEECCCCccHHHHHHhhcc
Confidence            445678999999999999999854

>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.46  E-value=0.024  Score=30.18  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=17.6

Q ss_pred             ccCCCccccccccccCCCCCCCccCCCCCCCc------ccccccccC
Q 023080          182 SQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITR  222 (287)
Q Consensus       182 ~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~L~~r  222 (287)
                      |.||+.||+.                 |+||.      .|+..|++|
T Consensus         1 P~sG~~Yhv~-----------------f~PPk~~g~cD~cg~~L~qR   30 (30)
T d1ak2a2           1 PQSGRSYHEE-----------------FNPPKEPMKDDITGEPLIRR   30 (30)
T ss_dssp             TTTCCEEBTT-----------------TBCCSSTTBCTTTCCBCEEC
T ss_pred             CCCCCCcccc-----------------ccCCCCCCccCCCCCCcccC
Confidence            4689999995                 66774      567777765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.052  Score=45.15  Aligned_cols=29  Identities=17%  Similarity=0.324  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      |-.++-++.|+|++|+||||++..+++..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            33477799999999999999999998743

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.0087  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.+|+|+.||||||+...|.--+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999997655

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.88  E-value=0.06  Score=44.34  Aligned_cols=29  Identities=21%  Similarity=0.014  Sum_probs=23.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .-+.+.+..|.|++||||||+|-.++...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            34466788899999999999998887654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.79  E-value=0.031  Score=40.07  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=16.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYA   71 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla   71 (287)
                      .+....+|.+|+|||||+++
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            35567889999999999766

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.78  E-value=0.05  Score=44.79  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeeh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIAT   85 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~   85 (287)
                      +.+.+.-|.|++||||||+|-.++...   |  +.+|++
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            466688899999999999999887654   2  345665

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.72  E-value=0.096  Score=38.66  Aligned_cols=28  Identities=25%  Similarity=0.076  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           51 KDRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ...+..=+|+||+.|||||-.-+.+.++
T Consensus         4 ~~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           4 KDHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceeEEEEEeccccHHHHHHHHHHHHh
Confidence            3466677889999999999877777665

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.65  E-value=0.075  Score=41.48  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      +...|+|+|-..+||||+..+|..
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHh
Confidence            447899999999999999999953

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.53  E-value=0.061  Score=44.72  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      ..|.|.|.|.|.|||||+-+.|..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHC
Confidence            568899999999999999999975

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.51  E-value=0.057  Score=46.98  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=19.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ....++|+|++|||||+..+.|...
T Consensus        49 ~~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          49 EPRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCcHHHHHHHHHHH
Confidence            4456899999999999987765543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.43  E-value=0.038  Score=42.70  Aligned_cols=24  Identities=21%  Similarity=0.055  Sum_probs=20.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           57 WVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      |+|+|+.+||||..|..|+...+-
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~   25 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQ   25 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSS
T ss_pred             EEEECCCCccHHHHHHHHHhcCCC
Confidence            689999999999999999866543

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.18  E-value=0.1  Score=38.05  Aligned_cols=25  Identities=28%  Similarity=0.109  Sum_probs=19.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +..-+|+||+.|||||-.-+.+.++
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHHHHH
Confidence            4456789999999999776666665

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.15  E-value=0.068  Score=41.74  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...|+++|-..+||||++.+|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHH
Confidence            367999999999999999988643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.13  E-value=0.086  Score=43.24  Aligned_cols=29  Identities=38%  Similarity=0.594  Sum_probs=24.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ....++..|+|+|.|.+||||+...|..+
T Consensus       107 ~~~~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         107 GVKPRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             TCCCCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cCCCCceEEEEEecCccchhhhhhhhhcc
Confidence            34457889999999999999999999754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.98  E-value=0.073  Score=43.77  Aligned_cols=24  Identities=33%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+.|.|+|.|.+||||+-+.|...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            468999999999999999999853

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.78  E-value=0.11  Score=42.14  Aligned_cols=32  Identities=28%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CC--Ceeehh
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATG   86 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d   86 (287)
                      ..|+|.|.=|+||||++-.||..+   |.  ..||.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            468899999999999998888776   43  346664

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.087  Score=42.33  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ...++|+||.++||||+.+.++--
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            356889999999999999988653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.44  E-value=0.06  Score=44.42  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +-+|+|+.||||||+...|+=-+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            557899999999999998864443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.27  E-value=0.11  Score=42.88  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ..|+|+|..||||||++..|...-|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            36999999999999999999866554

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.87  E-value=0.12  Score=42.41  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .|+|+|..|+||||++..|.-.-|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            5899999999999999999655443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.73  E-value=0.11  Score=39.81  Aligned_cols=20  Identities=20%  Similarity=0.263  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q 023080           57 WVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        57 Ivi~G~pGSGKTTla~~La~   76 (287)
                      .++.+|.|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            56789999999998777664

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.067  Score=44.80  Aligned_cols=17  Identities=41%  Similarity=0.651  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYAS   72 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~   72 (287)
                      .-+|+|.+|+|||||+.
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          16 VAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEEECSTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            45799999999999874

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.59  E-value=0.12  Score=38.02  Aligned_cols=23  Identities=22%  Similarity=-0.070  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .=+++||+.|||||-.-+.+.++
T Consensus         4 L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHHHHH
Confidence            44689999999999555555544

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.41  E-value=0.094  Score=43.82  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      |.|.|.|.|.+||||+-+.|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            5689999999999999999953

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.34  E-value=0.14  Score=40.06  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=18.5

Q ss_pred             EEEE-EcCCCCCHHHHHHHHHHHh
Q 023080           56 QWVF-LGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        56 ~Ivi-~G~pGSGKTTla~~La~~l   78 (287)
                      +|.| .|.-|+||||++..||..+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            3444 5999999999999888766

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.33  E-value=0.11  Score=41.40  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .++|+||..+||||+.+.++-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            6789999999999999877643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=89.28  E-value=0.11  Score=40.09  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Q 023080           54 NVQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La   75 (287)
                      -..|+++|-..+|||||..+|.
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEEEeccCCcHHHHHHHHH
Confidence            3578999999999999999995

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.20  E-value=0.16  Score=40.36  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .-++|+++|-..+||||++.+|....|.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4467899999999999999999776664

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.19  E-value=0.14  Score=41.11  Aligned_cols=29  Identities=24%  Similarity=0.226  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +.+.|+++|-.++||||++.+|.-..|..
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i   33 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGI   33 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            34789999999999999999998777754

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.99  E-value=0.079  Score=44.56  Aligned_cols=18  Identities=39%  Similarity=0.556  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYAS   72 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~   72 (287)
                      -.-+|+|.+|+||||++.
T Consensus        15 d~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CEEEEECCTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            345799999999999984

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.96  E-value=0.12  Score=44.20  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLG   79 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg   79 (287)
                      +-+|+|+.||||||+...|+=-+|
T Consensus        27 l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999863344

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.86  E-value=0.2  Score=39.12  Aligned_cols=24  Identities=33%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHHHh
Q 023080           55 VQWVFL-GCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        55 ~~Ivi~-G~pGSGKTTla~~La~~l   78 (287)
                      .+|.|. +.-|+||||++..||..+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHH
Confidence            356665 789999999999998776

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.66  E-value=0.19  Score=41.05  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehh
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFL---GVP--HIATG   86 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d   86 (287)
                      .|+|.|.=|+||||++-.||..|   |..  .||.|
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            57789999999999888777655   544  35553

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.64  E-value=0.19  Score=39.12  Aligned_cols=27  Identities=22%  Similarity=0.148  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGVPH   82 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~~~   82 (287)
                      ..+|.+|+|+|||.++-.++.+++...
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~  113 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTPT  113 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCE
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCce
Confidence            456788999999999999988886543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.53  E-value=0.16  Score=41.76  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ++-++.|+|++|+||||++..++..
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            5558999999999999999999866

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.53  E-value=0.071  Score=44.79  Aligned_cols=18  Identities=39%  Similarity=0.562  Sum_probs=15.3

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYAS   72 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~   72 (287)
                      -.-+|+|.+|+|||||+.
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            356899999999999875

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.11  E-value=0.2  Score=39.64  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           54 NVQWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        54 ~~~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      ...|+++|--++||||++..|.-..|.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999766664

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.16  Score=41.81  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      .+|.|+|+.+|||||+...|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            47789999999999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.36  E-value=0.46  Score=32.25  Aligned_cols=34  Identities=26%  Similarity=0.222  Sum_probs=28.0

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080           49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI   83 (287)
Q Consensus        49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i   83 (287)
                      |...+...|.|+|.-|+|-|.+|+.|.++ |+.+.
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~Vs   36 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNE-GYQIS   36 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEE
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhC-CCEEE
Confidence            45667789999999999999999998774 76554

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.50  E-value=0.11  Score=40.18  Aligned_cols=18  Identities=17%  Similarity=0.095  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCCHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASR   73 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~   73 (287)
                      .+++.+|+|||||+++..
T Consensus        42 ~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             CEEEECSSHHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHHH
Confidence            478999999999988643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.17  E-value=0.24  Score=39.86  Aligned_cols=29  Identities=28%  Similarity=0.452  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP   81 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~   81 (287)
                      +...|+++|-.++||||++.+|.-..|..
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i   51 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMV   51 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            44569999999999999999997766653

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.03  E-value=0.4  Score=44.48  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-.|+|.|-+|||||+-++.+-+.+
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45589999999999999999998765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.88  E-value=0.4  Score=44.66  Aligned_cols=26  Identities=19%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-.|+|.|-+|||||+-++.+-+.+
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55679999999999999999998776

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.84  E-value=0.3  Score=40.20  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLS   75 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La   75 (287)
                      +.|+|+|-..|||||+.+.|.
T Consensus        25 P~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHh
Confidence            368899999999999999995

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.74  E-value=0.47  Score=44.30  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      .++-.|+|.|-+|||||+-++.+-+.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356689999999999999999887765

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.73  E-value=0.36  Score=39.47  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q 023080           56 QWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .|+|+|--.|||||+.+.|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHhC
Confidence            688999999999999999963

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.52  E-value=0.35  Score=40.91  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080           56 QWVFLGCPGVGKGTYASRLSKFLGV   80 (287)
Q Consensus        56 ~Ivi~G~pGSGKTTla~~La~~lg~   80 (287)
                      .|+|+|..++||||++.+|-...|.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCC
Confidence            4999999999999999999876664

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.46  E-value=0.5  Score=44.01  Aligned_cols=26  Identities=23%  Similarity=0.472  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      +.-.|+|.|-+|||||+-++.+-+.+
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999987765

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.16  E-value=0.53  Score=37.48  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080           52 DRNVQWVFLGCPGVGKGTYASRLSKF   77 (287)
Q Consensus        52 ~~~~~Ivi~G~pGSGKTTla~~La~~   77 (287)
                      ..++..+|.|..|||||-++-..+..
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            47788899999999999998877654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.95  E-value=0.27  Score=38.91  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q 023080           55 VQWVFLGCPGVGKGTYASRLSK   76 (287)
Q Consensus        55 ~~Ivi~G~pGSGKTTla~~La~   76 (287)
                      .-+++.+|.|||||+.+-..+-
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHH
Confidence            3577899999999987766554

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.79  E-value=0.52  Score=44.46  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080           53 RNVQWVFLGCPGVGKGTYASRLSKFL   78 (287)
Q Consensus        53 ~~~~Ivi~G~pGSGKTTla~~La~~l   78 (287)
                      ++-.|+|.|-+|||||+-++.+-+.+
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999887765