Citrus Sinensis ID: 023081
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| 118489433 | 291 | unknown [Populus trichocarpa x Populus d | 0.975 | 0.962 | 0.807 | 1e-129 | |
| 224072650 | 291 | predicted protein [Populus trichocarpa] | 0.975 | 0.962 | 0.803 | 1e-129 | |
| 255554172 | 296 | conserved hypothetical protein [Ricinus | 0.965 | 0.935 | 0.801 | 1e-128 | |
| 225463848 | 292 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.955 | 0.773 | 1e-127 | |
| 147809817 | 292 | hypothetical protein VITISV_002585 [Viti | 0.972 | 0.955 | 0.773 | 1e-126 | |
| 224057581 | 292 | predicted protein [Populus trichocarpa] | 0.975 | 0.958 | 0.776 | 1e-124 | |
| 225464225 | 297 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.936 | 0.745 | 1e-122 | |
| 147814975 | 297 | hypothetical protein VITISV_025585 [Viti | 0.968 | 0.936 | 0.745 | 1e-122 | |
| 356567884 | 296 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.949 | 0.727 | 1e-118 | |
| 449432444 | 298 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.949 | 0.728 | 1e-117 |
| >gi|118489433|gb|ABK96519.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/280 (80%), Positives = 244/280 (87%)
Query: 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD 67
PYHV+HKLPPGDSPYVRAKHVQLVEKDP AAI LFWKAINAGDRVDSALKDMAVV+KQQD
Sbjct: 12 PYHVLHKLPPGDSPYVRAKHVQLVEKDPVAAIALFWKAINAGDRVDSALKDMAVVMKQQD 71
Query: 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127
R +EA+EAIK+FR CSKQAQESLDNVLIDLYKKCG+++EQIELLKQKLRMI+ GEAFNG
Sbjct: 72 RAEEAIEAIKAFRDRCSKQAQESLDNVLIDLYKKCGKVEEQIELLKQKLRMIHQGEAFNG 131
Query: 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187
K TKTARSHG+KFQVTVKQETSRILGNLGWAYMQKGNY +AEVVYRKAQ IDPDANKACN
Sbjct: 132 KATKTARSHGRKFQVTVKQETSRILGNLGWAYMQKGNYLAAEVVYRKAQSIDPDANKACN 191
Query: 188 LSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTTKKS 247
L CLIKQ RY EA+ VL+D+ GKL GS E K+ NR +ELL ELE QS L S
Sbjct: 192 LGLCLIKQTRYAEAQVVLDDIFRGKLLGSDEPKSRNRAQELLCELETHQSSSMFLEPSGS 251
Query: 248 SLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
SLED F+EGLD L +QWTPYRSRRLPIFEEIS FRDQLAC
Sbjct: 252 SLEDVFVEGLDQLTSQWTPYRSRRLPIFEEISSFRDQLAC 291
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072650|ref|XP_002303823.1| predicted protein [Populus trichocarpa] gi|222841255|gb|EEE78802.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/280 (80%), Positives = 243/280 (86%)
Query: 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD 67
PYHV+HKLPPGDSPYVRAKHVQLVEKDP AAI LFWKAINAGDRVDSALKDMAVV+KQQD
Sbjct: 12 PYHVLHKLPPGDSPYVRAKHVQLVEKDPGAAIALFWKAINAGDRVDSALKDMAVVMKQQD 71
Query: 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127
R +EA+EAIK+FR CSKQAQESLDNVLIDLYKKCG ++EQIELLKQKLRMI+ GEAFNG
Sbjct: 72 RAEEAIEAIKAFRDRCSKQAQESLDNVLIDLYKKCGNIEEQIELLKQKLRMIHQGEAFNG 131
Query: 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187
K TKTARSHG+KFQVTVKQETSRILGNLGWAYMQKGNY +AEVVYRKAQ IDPDANKACN
Sbjct: 132 KATKTARSHGRKFQVTVKQETSRILGNLGWAYMQKGNYLAAEVVYRKAQSIDPDANKACN 191
Query: 188 LSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTTKKS 247
L CLIKQ RY EA++VL+D+ GKL GS E K+ NR +ELL ELE QS S
Sbjct: 192 LGLCLIKQTRYAEAQAVLDDIFRGKLLGSDEPKSRNRAQELLCELETSQSSSMFSEPSGS 251
Query: 248 SLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
SLED F+EGLD L +QWTPYRSRRLPIFEEIS FRDQLAC
Sbjct: 252 SLEDVFVEGLDQLTSQWTPYRSRRLPIFEEISSFRDQLAC 291
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554172|ref|XP_002518126.1| conserved hypothetical protein [Ricinus communis] gi|223542722|gb|EEF44259.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/282 (80%), Positives = 250/282 (88%), Gaps = 5/282 (1%)
Query: 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD 67
P+HV+HKLPPGDSPYVRAKHVQLV KDPE AIVLFWKAINAGDRVDSALKDMA+V+KQQD
Sbjct: 18 PFHVIHKLPPGDSPYVRAKHVQLVHKDPEGAIVLFWKAINAGDRVDSALKDMAIVMKQQD 77
Query: 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127
R +EA+EAIKSFR CSKQAQESLDNVLIDLYKKCG+++EQIELLKQKLRMIY GEAFNG
Sbjct: 78 RAEEAIEAIKSFRDRCSKQAQESLDNVLIDLYKKCGKIEEQIELLKQKLRMIYEGEAFNG 137
Query: 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187
K TKTARSHGKKFQVT+KQETSRILGNLGWAYMQ+G+Y +AEVVYRKAQ IDPDANKACN
Sbjct: 138 KRTKTARSHGKKFQVTIKQETSRILGNLGWAYMQQGSYLAAEVVYRKAQSIDPDANKACN 197
Query: 188 LSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTTKKS 247
L CLIKQ RYTEA SVL DVL KLSGS + K+ +RVKELL ELE QS S+ T S
Sbjct: 198 LCLCLIKQTRYTEAHSVLNDVLQSKLSGSEDPKSRSRVKELLHELETCQS---SVVTSPS 254
Query: 248 --SLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
SLEDAF+EGL+ LM+QW+P+RS+RLPIFEEI+P RDQLAC
Sbjct: 255 GLSLEDAFVEGLEQLMSQWSPHRSKRLPIFEEITPCRDQLAC 296
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463848|ref|XP_002265262.1| PREDICTED: uncharacterized protein LOC100244941 [Vitis vinifera] gi|296088770|emb|CBI38220.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/283 (77%), Positives = 246/283 (86%), Gaps = 4/283 (1%)
Query: 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLK 64
+ +PYHV+HKLPPGD+PYVRAKH+QLVEKDPEAAI LFW+AIN GDRVDSALKDMAVV+K
Sbjct: 14 KQEPYHVIHKLPPGDTPYVRAKHLQLVEKDPEAAIALFWEAINVGDRVDSALKDMAVVMK 73
Query: 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA 124
QQ+RV+EA+EAIKSFR CSKQAQESLDNVL+DLYKKCG+L+EQIELLKQKLRMIY GEA
Sbjct: 74 QQNRVEEAIEAIKSFRDRCSKQAQESLDNVLMDLYKKCGKLEEQIELLKQKLRMIYQGEA 133
Query: 125 FNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184
FN KPTKTARSHG+KFQVT++QETSRILGNLGWAYMQ+ NY +AEVVYR+AQ IDPDANK
Sbjct: 134 FNRKPTKTARSHGRKFQVTIQQETSRILGNLGWAYMQQTNYATAEVVYREAQTIDPDANK 193
Query: 185 ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTT 244
ACNL CLIKQARY EARSVLEDVL GK GS + K+ NR ELL+E+EPWQS +T
Sbjct: 194 ACNLGLCLIKQARYDEARSVLEDVLHGKFCGSNDPKSRNRAHELLEEVEPWQSEAVFPST 253
Query: 245 KKSSLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
+ SLED F E LM Q +P R+RRLPIFEEISPFRDQLAC
Sbjct: 254 SEVSLEDCFFE----LMKQSSPSRTRRLPIFEEISPFRDQLAC 292
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147809817|emb|CAN73753.1| hypothetical protein VITISV_002585 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/283 (77%), Positives = 245/283 (86%), Gaps = 4/283 (1%)
Query: 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLK 64
+ +PYHV+HKLPPGD+PYVRAKH QLVEKDPEAAI LFW+AIN GDRVDSALKDMAVV+K
Sbjct: 14 KQEPYHVIHKLPPGDTPYVRAKHXQLVEKDPEAAIALFWEAINVGDRVDSALKDMAVVMK 73
Query: 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA 124
QQ+RV+EA+EAIKSFR CSKQAQESLDNVL+DLYKKCG+L+EQIELLKQKLRMIY GEA
Sbjct: 74 QQNRVEEAIEAIKSFRDRCSKQAQESLDNVLMDLYKKCGKLEEQIELLKQKLRMIYQGEA 133
Query: 125 FNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184
FN KPTKTARSHG+KFQVT++QETSRILGNLGWAYMQ+ NY +AEVVYR+AQ IDPDANK
Sbjct: 134 FNRKPTKTARSHGRKFQVTIQQETSRILGNLGWAYMQQTNYATAEVVYREAQTIDPDANK 193
Query: 185 ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTT 244
ACNL CLIKQARY EARSVLEDVL GK GS + K+ NR ELL+E+EPWQS +T
Sbjct: 194 ACNLGLCLIKQARYDEARSVLEDVLHGKFCGSNDPKSRNRAHELLEEVEPWQSEAVFPST 253
Query: 245 KKSSLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
+ SLED F E LM Q +P R+RRLPIFEEISPFRDQLAC
Sbjct: 254 SEVSLEDCFFE----LMKQSSPSRTRRLPIFEEISPFRDQLAC 292
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057581|ref|XP_002299278.1| predicted protein [Populus trichocarpa] gi|222846536|gb|EEE84083.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/282 (77%), Positives = 243/282 (86%), Gaps = 2/282 (0%)
Query: 8 PYH-VVHKLPP-GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ 65
PYH V+HKLPP GDSPYVRAKH QLVEKDPEAAI LFWKAINAGDRVDSALKDMAVV+KQ
Sbjct: 11 PYHHVIHKLPPPGDSPYVRAKHAQLVEKDPEAAIALFWKAINAGDRVDSALKDMAVVMKQ 70
Query: 66 QDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF 125
QDR +EA+EA+K+FR CSKQAQESLDNVLIDLYKKCG+++EQI+LLKQKL+MI+ GEAF
Sbjct: 71 QDRAEEAIEAVKAFRDRCSKQAQESLDNVLIDLYKKCGKIEEQIDLLKQKLKMIHQGEAF 130
Query: 126 NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185
N K TKTARSHG+KFQVTVKQETSRILGNLGWAYMQ+GNY +AE VY KAQ DPDANKA
Sbjct: 131 NRKATKTARSHGRKFQVTVKQETSRILGNLGWAYMQRGNYMAAEAVYHKAQSFDPDANKA 190
Query: 186 CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTTK 245
CNL CLIKQ RY EA+SV++D+L GKL GS E K+ NR +ELL+ELE QS
Sbjct: 191 CNLCLCLIKQTRYAEAKSVIDDILQGKLLGSDEPKSRNRAQELLRELETCQSSSMFSEPS 250
Query: 246 KSSLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
SLEDAF+EGLD LM+QWTPYRSRRLPIFEEISPF DQLAC
Sbjct: 251 GLSLEDAFVEGLDQLMSQWTPYRSRRLPIFEEISPFMDQLAC 292
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464225|ref|XP_002265748.1| PREDICTED: uncharacterized protein LOC100252818 [Vitis vinifera] gi|297744303|emb|CBI37273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/283 (74%), Positives = 245/283 (86%), Gaps = 5/283 (1%)
Query: 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD 67
P+ V+HKLP GD+PYVRAKH QLVEKDPE AIVLFWKAINAGDRVDSALKDMAVV+KQ D
Sbjct: 17 PFCVLHKLPSGDTPYVRAKHAQLVEKDPEVAIVLFWKAINAGDRVDSALKDMAVVMKQLD 76
Query: 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127
R +EA+EAIKSFR LCSKQAQESLDNVLIDLYKKCGR+DEQI+LLKQKLR+IY GEAFNG
Sbjct: 77 RTEEAIEAIKSFRSLCSKQAQESLDNVLIDLYKKCGRIDEQIDLLKQKLRLIYQGEAFNG 136
Query: 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187
KPTKTARSHGKKFQV++KQETSRILGNLGWAYMQK NY +AEVVY+KAQ+IDPDANKACN
Sbjct: 137 KPTKTARSHGKKFQVSIKQETSRILGNLGWAYMQKSNYMAAEVVYKKAQMIDPDANKACN 196
Query: 188 LSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP-WQSIPPSLTTK- 245
L+ CLIKQAR +EARS+L +VL G + GS + K NR +EL+ E+EP W +PPS K
Sbjct: 197 LALCLIKQARNSEARSILNEVLQGNIPGSEDCKAQNRAQELMVEVEPRW--LPPSTKMKI 254
Query: 246 -KSSLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
+ LED ++GL+ L+N+W P R++RLPIFEEIS +R+QLAC
Sbjct: 255 ARFDLEDDLIDGLEKLLNEWAPSRTKRLPIFEEISSYRNQLAC 297
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147814975|emb|CAN74743.1| hypothetical protein VITISV_025585 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/283 (74%), Positives = 245/283 (86%), Gaps = 5/283 (1%)
Query: 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD 67
P+ V+HKLP GD+PYVRAKH QLVEKDPE AIVLFWKAINAGDRVDSALKDMAVV+KQ D
Sbjct: 17 PFCVLHKLPSGDTPYVRAKHAQLVEKDPEVAIVLFWKAINAGDRVDSALKDMAVVMKQLD 76
Query: 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127
R +EA+EAIKSFR LCSKQAQESLDNVLIDLYKKCGR+DEQI+LLKQKLR+IY GEAFNG
Sbjct: 77 RTEEAIEAIKSFRSLCSKQAQESLDNVLIDLYKKCGRIDEQIDLLKQKLRLIYQGEAFNG 136
Query: 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187
KPTKTARSHGKKFQV++KQETSRILGNLGWAYMQK NY +AEVVY+KAQ+IDPDANKACN
Sbjct: 137 KPTKTARSHGKKFQVSIKQETSRILGNLGWAYMQKSNYMAAEVVYKKAQMIDPDANKACN 196
Query: 188 LSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP-WQSIPPSLTTK- 245
L+ CLIKQAR +EARS+L +VL G + GS + K NR +EL+ E+EP W +PPS K
Sbjct: 197 LALCLIKQARNSEARSILNEVLQGNIPGSEDCKAQNRAQELMLEVEPRW--LPPSTKMKI 254
Query: 246 -KSSLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
+ LED ++GL+ L+N+W P R++RLPIFEEIS +R+QLAC
Sbjct: 255 ARFDLEDDLIDGLEKLLNEWAPSRTKRLPIFEEISSYRNQLAC 297
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567884|ref|XP_003552145.1| PREDICTED: uncharacterized protein LOC100805188 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/283 (72%), Positives = 239/283 (84%), Gaps = 2/283 (0%)
Query: 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLK 64
+D YHV+HK+P GDSPYVRAKH QLVEKDPEAAIVLFWKAIN+GD+VDSALKDMAVV+K
Sbjct: 16 KDDLYHVLHKVPYGDSPYVRAKHAQLVEKDPEAAIVLFWKAINSGDKVDSALKDMAVVMK 75
Query: 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA 124
Q DR DEA+EAI+SFR LCSKQ+QESLDNVLIDLYKKCG++DEQIE+LK+KL++IY GEA
Sbjct: 76 QLDRSDEAIEAIRSFRSLCSKQSQESLDNVLIDLYKKCGKIDEQIEMLKRKLKLIYQGEA 135
Query: 125 FNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184
FNGK TKTARSHGKKFQV++KQETSR+LGNLGWAYMQK NY AEVVYRKAQ+IDPD NK
Sbjct: 136 FNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYMMAEVVYRKAQIIDPDCNK 195
Query: 185 ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTT 244
ACNL CLI+QARY EA+ VLEDVL G L GS ++K R ++L EL +PP +
Sbjct: 196 ACNLGLCLIRQARYEEAQLVLEDVLKGNLPGSDDSKARKRAQDLRTELRSM--LPPPHFS 253
Query: 245 KKSSLEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
L+D F++GL+ LMN+W P RS+RLPIFEEIS FRDQLAC
Sbjct: 254 DLLGLDDEFIKGLEQLMNEWGPIRSKRLPIFEEISSFRDQLAC 296
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432444|ref|XP_004134009.1| PREDICTED: uncharacterized protein LOC101216846 [Cucumis sativus] gi|449487532|ref|XP_004157673.1| PREDICTED: uncharacterized protein LOC101223392 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/291 (72%), Positives = 242/291 (83%), Gaps = 8/291 (2%)
Query: 3 QTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVV 62
Q + P+HVVHKLP GDSPYVRAKHVQLV+KDPEAAIVLFWKAINAGDRVDSALKDMAVV
Sbjct: 10 QNLETPFHVVHKLPAGDSPYVRAKHVQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVV 69
Query: 63 LKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG 122
+KQQDR +EA+EAI SFR CSKQAQESLDNVLIDLYKKCGR++EQI+LLKQKLRMI G
Sbjct: 70 MKQQDRAEEAIEAINSFRDRCSKQAQESLDNVLIDLYKKCGRVEEQIDLLKQKLRMINQG 129
Query: 123 EAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182
EAFNGK TKTARSHGKKFQVT++QETSRILGNLGWAYMQ+ N+ +AEVVY+KAQ+IDPDA
Sbjct: 130 EAFNGKATKTARSHGKKFQVTIRQETSRILGNLGWAYMQQENHKAAEVVYQKAQIIDPDA 189
Query: 183 NKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSL 242
NKACNLS CL+KQARY+EAR+VLE VL K+ GS + K+ R +EL++ELE +S L
Sbjct: 190 NKACNLSLCLMKQARYSEARAVLEQVLHDKVGGSNDQKSRKRAEELMKELEEAESANKLL 249
Query: 243 TTKKSS-----LEDAFLEGLDDLMNQWTPYR-SRRLPIFEEISPFRDQLAC 287
SS +D F+ L + NQ +P R SRRLPIFEEIS FRDQLAC
Sbjct: 250 MMGLSSGGSEDYDDGFINQL--VTNQRSPLRSSRRLPIFEEISQFRDQLAC 298
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| TAIR|locus:2010612 | 303 | AT1G04770 "AT1G04770" [Arabido | 0.972 | 0.920 | 0.697 | 1e-100 | |
| TAIR|locus:2156574 | 306 | ATSDI1 "SULPHUR DEFICIENCY-IND | 0.968 | 0.908 | 0.644 | 4.7e-96 | |
| TAIR|locus:2080858 | 430 | AT3G51280 "AT3G51280" [Arabido | 0.808 | 0.539 | 0.618 | 1.4e-73 | |
| TAIR|locus:2133099 | 450 | MS5 "MALE-STERILE 5" [Arabidop | 0.717 | 0.457 | 0.529 | 2.8e-57 | |
| TAIR|locus:2158750 | 469 | AT5G44330 [Arabidopsis thalian | 0.815 | 0.498 | 0.518 | 1.8e-55 | |
| TAIR|locus:4515103601 | 237 | AT5G22794 "AT5G22794" [Arabido | 0.250 | 0.303 | 0.722 | 2.1e-22 | |
| TAIR|locus:2031035 | 230 | AT1G49940 "AT1G49940" [Arabido | 0.083 | 0.104 | 0.708 | 0.00058 |
| TAIR|locus:2010612 AT1G04770 "AT1G04770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 198/284 (69%), Positives = 235/284 (82%)
Query: 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR 68
Y+VVHKLP GDSPYVRAKHVQLVEKD EAAI LFW AI A DRVDSALKDMA+++KQQ+R
Sbjct: 20 YNVVHKLPHGDSPYVRAKHVQLVEKDAEAAIELFWIAIKARDRVDSALKDMALLMKQQNR 79
Query: 69 VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128
+EA++AI+SFR LCS+QAQESLDNVLIDLYKKCGR++EQ+ELLKQKL MIY GEAFNGK
Sbjct: 80 AEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGEAFNGK 139
Query: 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNL 188
PTKTARSHGKKFQVTV++ETSRILGNLGWAYMQ +YT+AE VYRKAQLI+PDANKACNL
Sbjct: 140 PTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACNL 199
Query: 189 SHCLIKQARYTEARSVL-EDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTTKKS 247
CLIKQ ++ EARS+L DVL+ GS + + + RV+ELL EL+P + + + +
Sbjct: 200 CTCLIKQGKHDEARSILFRDVLMENKEGSGDPRLMARVQELLSELKPQEEEAAASVSVEC 259
Query: 248 SL---EDAFLEGLDDLMNQWT-PYRSRRLPIFEEISPFRDQLAC 287
+ E A +EGLD+ + +W PYR+RRLPIFEEI P RDQLAC
Sbjct: 260 EVGIDEIAVVEGLDEFVKEWRRPYRTRRLPIFEEILPLRDQLAC 303
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| TAIR|locus:2156574 ATSDI1 "SULPHUR DEFICIENCY-INDUCED 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 185/287 (64%), Positives = 230/287 (80%)
Query: 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ 65
D+ +HV+HK+P GD+PYVRAKH QL+EK+PE AIV FWKAIN GDRVDSALKDMAVV+KQ
Sbjct: 24 DELFHVIHKVPCGDTPYVRAKHAQLIEKNPEMAIVWFWKAINTGDRVDSALKDMAVVMKQ 83
Query: 66 QDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF 125
DR +EA+EAIKSFR CSK +Q+SLDNVLIDLYKKCGR++EQ+ELLK+KLR IY GEAF
Sbjct: 84 LDRSEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVELLKRKLRQIYQGEAF 143
Query: 126 NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185
NGKPTKTARSHGKKFQVTV+QE SR+LGNLGWAYMQ+ Y SAE VYRKAQ+++PDANK+
Sbjct: 144 NGKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAEAVYRKAQMVEPDANKS 203
Query: 186 CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPSLTTK 245
CNL+ CLIKQ R+ E R VL+DVL ++ G+ + +T R +ELL ELE S+P +
Sbjct: 204 CNLAMCLIKQGRFEEGRLVLDDVLEYRVLGADDCRTRQRAEELLSELE--SSLPRMRDAE 261
Query: 246 KSS-----LEDAFLEGLDDLMNQWTPYRSRRLPIFEEISPFRDQLAC 287
L+D F+ GL+++ + T ++S+RLPIFE+IS FR+ L C
Sbjct: 262 MEDVLGNILDDDFVLGLEEMTS--TSFKSKRLPIFEQISSFRNTLVC 306
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| TAIR|locus:2080858 AT3G51280 "AT3G51280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 146/236 (61%), Positives = 179/236 (75%)
Query: 1 MSQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMA 60
+S+T+ + +H +HK+P GDSPYVRAK+VQLVEKDPE AI LFWKAINAGDRVDSALKDMA
Sbjct: 22 ISRTQSESFHAIHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWKAINAGDRVDSALKDMA 81
Query: 61 VVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120
+V+KQQ+R +EA+EAIKS R CS QAQESLDN+L+DLYK+CGRLD+QI LLK KL +I
Sbjct: 82 IVMKQQNRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQ 141
Query: 121 HGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180
G AFNGK TKTARS GKKFQV+V+QE +R+LGNLGWA MQ+ N+ AE YR+A I P
Sbjct: 142 KGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAEDAYRRALSIAP 201
Query: 181 DANKACNLSHCLIKQARYTEARSVLEDVLLGKLSG----STETKTINRVKELLQEL 232
D NK CNL CL+KQ R EA+ L V + G + K R +++L +L
Sbjct: 202 DNNKMCNLGICLMKQGRIDEAKETLRRVKPAVVDGPRGVDSHLKAYERAQQMLNDL 257
|
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| TAIR|locus:2133099 MS5 "MALE-STERILE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 118/223 (52%), Positives = 159/223 (71%)
Query: 2 SQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAV 61
S+ RD P+H+VHK+P GDSPYVRAKH QL++KDP AI LFW AINAGDRVDSALKDMAV
Sbjct: 45 SERRD-PFHIVHKVPSGDSPYVRAKHAQLIDKDPNRAISLFWTAINAGDRVDSALKDMAV 103
Query: 62 VLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121
V+KQ R DE +EAIKSFR+LCS ++Q+S+DN+L++LYKK GR++E+ LL+ KL+ +
Sbjct: 104 VMKQLGRSDEGIEAIKSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQ 163
Query: 122 GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR-------- 173
G F G+ ++ R GK +T++QE +RILGNLGW ++Q NY AE YR
Sbjct: 164 GMGFGGRVSRAKRVQGKHVIMTIEQEKARILGNLGWVHLQLHNYGIAEQHYRFGFVTKIP 223
Query: 174 --------KAQLIDPDANKACNLSHCLIKQARYTEARSVLEDV 208
+A ++ D NK CNL+ CL++ +R EA+S+L+DV
Sbjct: 224 NIDYCLVMRALGLERDKNKLCNLAICLMRMSRIPEAKSLLDDV 266
|
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| TAIR|locus:2158750 AT5G44330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 125/241 (51%), Positives = 157/241 (65%)
Query: 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIK 77
GDSPYVRAKH QLV KDP AI LFW AINAGDRVDSALKDM VVLKQ +R DE +EAIK
Sbjct: 53 GDSPYVRAKHAQLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQLNRFDEGIEAIK 112
Query: 78 SFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137
SFR+LC ++Q+S+DN+L++LY K GR+ E ELL+ KLR + + + G+ RSH
Sbjct: 113 SFRYLCPFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAKRSHE 172
Query: 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQAR 197
++ T++QE +RILGNL W ++Q NY AE YR A ++PD NK CNL+ CLI+ R
Sbjct: 173 EQNNKTIEQEKARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLIRMER 232
Query: 198 YTEARSVLEDVL--LG-KLSGSTETKTINRVKELLQELEPWQSI--PPSLTTKKSSLEDA 252
EA+S+LEDV LG + K+ R E+L E E P L T SS D
Sbjct: 233 THEAKSLLEDVKQSLGNQWKNEPFCKSFERATEMLAEREQATVADKPEDLLT--SSFSDN 290
Query: 253 F 253
F
Sbjct: 291 F 291
|
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| TAIR|locus:4515103601 AT5G22794 "AT5G22794" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 81 HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKF 140
H+ QAQESL+NVLIDLYKK GR +EQ+ELLK +L MIY EAFNGKP K ARSHG+KF
Sbjct: 66 HISYGQAQESLENVLIDLYKKGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKF 125
Query: 141 QVTVKQETSRIL 152
QVTV++ETSR+L
Sbjct: 126 QVTVEKETSRML 137
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| TAIR|locus:2031035 AT1G49940 "AT1G49940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 93 (37.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 118 MIYHGEAFNGKPTKTARSHGKKFQ 141
MIY EAFNGKP K ARSHG+ F+
Sbjct: 1 MIYQEEAFNGKPAKIARSHGRNFR 24
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00031467 | hypothetical protein (292 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 287 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 3e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 5e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.001 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.002 | |
| pfam12895 | 80 | pfam12895, Apc3, Anaphase-promoting complex, cyclo | 0.004 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-07
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
L NLG Y + G+Y A Y KA +DPD A NL+ K +Y EA E L
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 147 ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVL 205
+ + NL AY + G Y A Y KA +DPD KA NL K +Y EA
Sbjct: 32 DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91
Query: 206 EDVL 209
E L
Sbjct: 92 EKAL 95
|
Length = 100 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181
+ L NLG AY++ G+Y A Y KA +DP+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181
++ L NLG AY++ G Y A Y KA ++P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181
R LG Y+Q G+Y A+ Y KA +DP+
Sbjct: 2 RAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33
|
Length = 34 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.001
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKA-----QLIDPDANKA---CNLSHCLIKQAR 197
+ + L NL + G+Y A + KA +L + A NL+ +
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 198 YTEARSVLEDVL 209
Y EA LE L
Sbjct: 62 YDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.001
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQ-ARYTEARSVLEDVL 209
NLG A + G+Y A Y KA +DPD +A NL+ +K Y EA LE L
Sbjct: 8 NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182
L NLG AY + G+Y A Y KA +DP+
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3 | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.004
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN--LSHCLIKQARYTEARSVLEDV 208
L Y +G Y A + RK +L D + C L+ CL+K +Y EA +VLE
Sbjct: 28 LAQCYFLQGQYKRAYELLRKLKL---DNSSGCRYLLAQCLLKLGKYDEAIAVLEKA 80
|
Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.83 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.82 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.82 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.81 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.81 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.81 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.81 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.69 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.68 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.67 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.61 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.58 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.58 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.54 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.52 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.51 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.49 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.46 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.45 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.44 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.42 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.39 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.36 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.29 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.29 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.28 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.27 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.26 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.26 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.24 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.23 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.22 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.22 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.22 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.22 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.2 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.2 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.18 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 99.16 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.15 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.15 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.11 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.11 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.1 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.1 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.08 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.06 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.03 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.02 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 99.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.0 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.99 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.97 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.96 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.95 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.93 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.92 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.91 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.8 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.77 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.74 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.74 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.72 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.59 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.51 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.51 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.43 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.4 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.35 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.33 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.32 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.27 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.25 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.25 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 98.09 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.09 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.08 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.05 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.05 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.03 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 98.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.95 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.92 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.86 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.85 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.84 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.81 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.81 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.77 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.75 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.68 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.67 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.61 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.54 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.47 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.46 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.44 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.43 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.4 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.4 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.39 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.36 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.34 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.31 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.3 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.26 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.18 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.08 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.06 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.01 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.97 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.86 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.85 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.85 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.83 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.81 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.8 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.76 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.75 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.72 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.7 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.65 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.65 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 96.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.41 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.35 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.33 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 96.27 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.26 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.26 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.21 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.21 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.19 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.18 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 96.17 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.14 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 96.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.04 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.03 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.98 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.98 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.98 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.83 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.82 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 95.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.72 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.46 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.4 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.33 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.31 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.14 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 95.12 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 95.04 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.04 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.99 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 94.99 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.89 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.83 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.77 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 94.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 94.69 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.69 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.57 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.45 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.37 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.35 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.35 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 94.28 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.14 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.97 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.91 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.9 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 93.86 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 93.58 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 93.54 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.37 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 93.26 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.23 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.23 | |
| PF12854 | 34 | PPR_1: PPR repeat | 93.15 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.08 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 93.06 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 93.05 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.9 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 92.58 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 92.23 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.2 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 91.8 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 91.74 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.72 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 91.64 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.59 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.39 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.36 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.25 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 91.22 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 91.0 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 90.26 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 89.94 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 89.75 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 89.7 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 89.65 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 89.39 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 89.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 89.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.78 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 88.5 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.42 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.33 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 88.33 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 88.03 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 87.95 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 87.66 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 87.55 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 87.36 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 87.19 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 87.14 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 87.01 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 86.59 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 86.45 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 85.87 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 85.77 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 85.73 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 85.23 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.9 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 84.28 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 83.62 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 83.6 | |
| KOG1497 | 399 | consensus COP9 signalosome, subunit CSN4 [Posttran | 83.48 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 82.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 82.22 | |
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 82.13 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 81.9 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.75 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 81.69 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 81.37 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.82 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 80.51 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 80.21 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=193.20 Aligned_cols=221 Identities=19% Similarity=0.173 Sum_probs=172.5
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..++|+..|..+-+|-.+|-++..+|+...|+..|++|+.++|....++++||.+|...+.+++|+..|.+++.+.|+++
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 34678888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
.++..+|.+|.++|..+-|+..|++++++.|.- .++ ......++..++.+ ++...|+++.+.++||.+
T Consensus 287 --~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk-aL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 287 --VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK-ALRLCPNHADAMNNLGNI 363 (966)
T ss_pred --hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH-HHHhCCccHHHHHHHHHH
Confidence 677788888888888888888888888887742 222 12245667777776 788888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
|.++|.+++|...|+++++..|+...+. +||.+|..+|+.++|+.+|++++.+ .+....++......+++++.
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI---~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI---KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc---CchHHHHHHhcchHHHHhhh
Confidence 8888888888888888888888887776 7888888888888888888888887 44444444444444444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=183.00 Aligned_cols=201 Identities=20% Similarity=0.201 Sum_probs=114.6
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
++++++.+|+..++|+++|.++...+.++.|+.+|.+|+...|+.+.++-++|.+|+.+|..+-|+..|++++++.|+.+
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 44567777777777777777777777777777776666666666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
.+++.++..+...|+..+|..+|.+++.+.|. ++++ .....+.|...+++ ++...|+.+.++.+||.+
T Consensus 321 --~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~-al~v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 321 --DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK-ALEVFPEFAAAHNNLASI 397 (966)
T ss_pred --HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH-HHhhChhhhhhhhhHHHH
Confidence 55555555555556666666666665555541 2222 11123334444443 455555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|.++|++++|+.+|++++.+.|...+++ ++|..|..+|+.+.|++.|.+++..
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 5555555555555555555555554444 4555555555555555555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=162.49 Aligned_cols=205 Identities=13% Similarity=0.074 Sum_probs=184.2
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.++..+|+.++.|-.+|.++-.+++++.|+++|++|+.++|+...++..+|.=+....+++.|..+|+.++..+|.+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-- 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY-- 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--
Confidence 478889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF---------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
++|+-+|.+|.++++++.|.-.|++|++++|...+. .-+..+.|...+++ ++.++|.++-..+..|.++.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~-A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK-AIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH-HHhcCCCCchhHHHHHHHHH
Confidence 899999999999999999999999999999954332 12356777888887 88999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCC
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGST 217 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 217 (287)
..+++++|+..+++.-++.|+...++ .+|.+|..+|+.+.|+..|.-|.+..+.+..
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999987665 8999999999999999999988888544433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=165.67 Aligned_cols=195 Identities=11% Similarity=0.045 Sum_probs=154.6
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.|+...++..+|.++...|++++|+..|++++..+|+...++..+|.++...|++++|+..|+++++.+|+++ .++..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence 4677788888888888888888899888888888888888888888888888888888888888888888877 78888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
+|.++...|++++|+..|+++++++|.. .++ ....++.+...++. ++...|+++.++..+|.++...|++
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~-al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR-CKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHccCH
Confidence 8888888888888988888888888842 222 23356777777776 6778888888888888888888888
Q ss_pred HHHHHHHHHHHhhCCCchHH-------HHHHHH-HHhccCHHHHHHHHHHHHhcc
Q 023081 166 TSAEVVYRKAQLIDPDANKA-------CNLSHC-LIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~~-------~~l~~~-~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++|+..|++++.+.|+.... ++.+.+ +...|++++|...+++++...
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88888888888888764221 122323 344688888888888888763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-20 Score=162.08 Aligned_cols=197 Identities=14% Similarity=0.095 Sum_probs=115.2
Q ss_pred hcCCCCchHHHHhHHhHHh---hCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 13 HKLPPGDSPYVRAKHVQLV---EKDPEAAIVLFWKAINAG---DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+.+|.....+..+|..... .+++++|+..|++++..+ |....++..+|.++...|++++|+..|++++..+|+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3455555555555544332 355666666666666542 4445556666666666666666666666666666655
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
. ..+..+|.++...|++++|+..|+++++.+|.. ..+ ....++.|...+++ ++..+|++..++..+|.
T Consensus 365 ~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k-al~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 T--QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK-SIDLDPDFIFSHIQLGV 441 (615)
T ss_pred H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCccCHHHHHHHHH
Confidence 4 455566666666666666666666666665521 111 12244555555555 55666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++...|++++|+..|++++...|+++..+ .+|.++..+|++++|+..|++++...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666665554 56666666666666666666666553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=132.93 Aligned_cols=168 Identities=21% Similarity=0.158 Sum_probs=155.8
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
..+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++. .+.++.|..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHH
Confidence 357889999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
++.+|++++|...|++++..- .-+..+.+|-++|.|..+.|+++.|..+|+++++.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 999999999999999998641 12335788999999999999999999999999999
Q ss_pred CCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|+.+... .++..++..|++-.|..+++......
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 99997775 89999999999999999999988763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-19 Score=157.23 Aligned_cols=197 Identities=16% Similarity=0.118 Sum_probs=88.3
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++ .
T Consensus 102 ~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~--~ 179 (656)
T PRK15174 102 LLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG--D 179 (656)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH--H
Confidence 44455555555555555555555555555555555555555555555555555555555555555555544444332 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccch---------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYH---------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
.+..++ .+...|++++|+..+++++...|. +..+ .......+...++. ++...|+++.++..+|.++.
T Consensus 180 a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~-al~~~p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 180 MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES-ALARGLDGAALRRSLGLAYY 257 (656)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHH
Confidence 111111 122333333333333333332210 0000 01122233333333 33444444555555555555
Q ss_pred HcCCHHH----HHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 161 QKGNYTS----AEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 161 ~~g~~~~----A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|++++ |+..|++++..+|++...+ .+|.++..+|++++|+..+++++..
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555443 4455555555555444433 4455555555555555555554444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=156.21 Aligned_cols=177 Identities=13% Similarity=0.013 Sum_probs=136.9
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhh---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVE---------KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (287)
+-+.+++..+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus 282 ~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 282 KLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 345568999999999999999887643 44899999999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 77 KSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 77 ~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
+++++++|+++ ..+..+|.++...|++++|+..++++++++|. ++..+..++
T Consensus 362 ~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--------------------------~~~~~~~~~ 413 (553)
T PRK12370 362 KQANLLSPISA--DIKYYYGWNLFMAGQLEEALQTINECLKLDPT--------------------------RAAAGITKL 413 (553)
T ss_pred HHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------------------ChhhHHHHH
Confidence 99999999988 78889999999999999999999999999884 333333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLID-PDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.+++..|++++|+..+++++... |+++..+ ++|.++..+|++++|...+.++..
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 44555555666666666555543 4444433 555555556666666666555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=138.61 Aligned_cols=198 Identities=13% Similarity=0.012 Sum_probs=155.8
Q ss_pred hhhHhhcCC----CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 8 PYHVVHKLP----PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 8 ~~~~l~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+.++|...| ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++
T Consensus 49 ~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 49 LNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred HHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345665444 2356799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh---h-----cCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA---F-----NGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
|++. .++..+|.++...|++++|++.|+++++.+|.... + .......+...+.......+|+ .|. .
T Consensus 129 P~~~--~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~---~~~-~ 202 (296)
T PRK11189 129 PTYN--YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE---QWG-W 202 (296)
T ss_pred CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc---ccH-H
Confidence 9987 78899999999999999999999999999985431 1 1234666777665422222222 232 4
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-------hhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQ-------LIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.++...|++.++ ..+..+. ++.|....+| ++|.++..+|++++|+.+|+++++..
T Consensus 203 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 203 NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5666677776554 2333333 4445555565 89999999999999999999999884
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-18 Score=150.85 Aligned_cols=203 Identities=13% Similarity=0.038 Sum_probs=177.5
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-+..++...|+++.+++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++
T Consensus 64 l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 64 LLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh-------h-cCCChhHHHHHHHHHhhhcCC-CcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-------F-NGKPTKTARSHGKKFQVTVKQ-ETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~lg~ 157 (287)
. .++..++.++...|++++|+..+++++...|.... + ....+..|...++. .+...| ........++.
T Consensus 144 ~--~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~-~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 144 S--QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA-LLPFFALERQESAGLAVD 220 (656)
T ss_pred H--HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcchhHHHHHHH
Confidence 8 78889999999999999999999999888774221 1 23456777777776 355554 34445566788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH----HHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE----ARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~----A~~~~~~~l~~~ 212 (287)
++...|++++|+..|++++..+|+++..+ ++|.++...|++++ |...|+++++..
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998776 89999999999986 899999999984
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-18 Score=132.49 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=153.1
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
..+..++.+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+. ..+..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999877 6888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
.++...|++++|+..+++++...+ .+.....+..+|.++...|++++|...+.+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPL------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccc------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999987532 12256678889999999999999999999999
Q ss_pred hhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 177 LIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 177 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
...|++...+ .+|.++...|++++|..++++++..
T Consensus 163 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999887665 8999999999999999999999987
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-18 Score=155.60 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=177.2
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.++...|+++..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|++.
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 533 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL-- 533 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--
Confidence 455678889999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..+..++.++...|++++|+..+++++...|... .+ .......+...++. .+...|.++.+|..+|.++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE-AADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHH
Confidence 7888899999999999999999999998887321 22 24457777777777 57778889999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|++++|+..|+++++..|+++..+ .+|.++...|++++|...|+++++..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999987776 89999999999999999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=152.36 Aligned_cols=200 Identities=12% Similarity=0.028 Sum_probs=160.6
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
.+.+...|++. ....+|.++...|++++|+..|++++...|.. ..+..+|.++...|++++|+.++++++...|+..
T Consensus 500 ~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~- 576 (987)
T PRK09782 500 LQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN- 576 (987)
T ss_pred HHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-
Confidence 34566667543 35556666677888888888888876665554 5577888888888888888888888888887665
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc--------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN--------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..+..++......|++++|+..|+++++.+|....+. ....+.+...+++ ++..+|+++.++.++|.++.
T Consensus 577 -~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~-AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 577 -ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA-ALELEPNNSNYQAALGYALW 654 (987)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHH
Confidence 4555556666667999999999999999988643331 3357778888887 79999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|++++|+..|+++++.+|+++.++ ++|.++..+|++++|+..|+++++..+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998886 999999999999999999999998853
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=145.52 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH-------------------------------- 81 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------------- 81 (287)
+..+|+..|++.-...++...++..+|.+|+.+++|++|..+|+.+.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 444555555553333344445555555555555555555555555444
Q ss_pred --hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-hhhhh--cCC------ChhHHHHHHHHHhhhcCCCcHH
Q 023081 82 --LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY-HGEAF--NGK------PTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 82 --~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~--~~~------~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.+|+.+ +.|..+|++|..+++++.|+++|+++++++| ..-+| .|. .++.|...++. ++..+|.+..
T Consensus 414 i~~~~~sP--esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~-Al~~~~rhYn 490 (638)
T KOG1126|consen 414 IDTDPNSP--ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK-ALGVDPRHYN 490 (638)
T ss_pred HhhCCCCc--HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh-hhcCCchhhH
Confidence 344445 6788889999999999999999999999888 23333 232 35667777776 7888899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|+.+|.+|.++++++.|+-.|++|++++|.+... ..+|.++.++|+.++|+.+|++|+...
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998666 489999999999999999999999875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=138.29 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=149.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
++..-.+|..|..+++.++|+.+|+++++++|....+|..+|.-|..+.+...|++.|+++++++|.+- .+|+.+|+.
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhHH
Confidence 445556788888899999999999999999999999999999999999999999999999999999887 889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
|.-++...=|+-+|+++++.-| +++.+|..+|.||.+.++.++|+++|++++..
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kP--------------------------nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKP--------------------------NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCC--------------------------CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999998776655 49999999999999999999999999999998
Q ss_pred CCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.....+ +.||.+|.++++..+|..+|++.++..
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7776555 599999999999999999999999854
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=143.53 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=132.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+++ |..|..++..|+..+|+-.|+.++..+|.++++|..||.+....++-..|+..++++++++|++. .+...|+.
T Consensus 285 ~pdP-f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--eaLmaLAV 361 (579)
T KOG1125|consen 285 HPDP-FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL--EALMALAV 361 (579)
T ss_pred CCCh-HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH--HHHHHHHH
Confidence 3444 57799999999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhh-----cC------C-C----hhHH-HHHHHHHhhhcCC--CcHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAF-----NG------K-P----TKTA-RSHGKKFQVTVKQ--ETSRILGNLGWA 158 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~------~-~----~~~a-~~~~~~~~~~~~~--~~~~~~~~lg~~ 158 (287)
.|...|.-.+|..++.+.+...|.-.-. .+ . . .... ..+++ +....| .++++...||.+
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLe--aa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLE--AARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHH--HHHhCCCCCChhHHhhhHHH
Confidence 9999999999999999998866510000 00 0 0 0001 11111 222223 355555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|...|+|++|+.+|+.||...|++...| .||..+..-.+..+|+..|++|+++.
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 5555555555555555555555555555 45555555555555555555555553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=157.20 Aligned_cols=204 Identities=17% Similarity=0.159 Sum_probs=168.5
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-------------------------
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAV------------------------- 61 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~------------------------- 61 (287)
-+.+++...|++..+++.+|.++...|++++|++.|+++++.+|.+..++..++.
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 3446888899999999999999999999999999999999999998776655544
Q ss_pred -----------------HHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh
Q 023081 62 -----------------VLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA 124 (287)
Q Consensus 62 -----------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 124 (287)
++...|++++|+..|+++++.+|+++ .++..++.+|...|++++|+..++++++..|....
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV--WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 44567999999999999999999988 67889999999999999999999999998873221
Q ss_pred -h-------c-CCChhHHHHHHHHH---------------------------------------hhhcCCCcHHHHHHHH
Q 023081 125 -F-------N-GKPTKTARSHGKKF---------------------------------------QVTVKQETSRILGNLG 156 (287)
Q Consensus 125 -~-------~-~~~~~~a~~~~~~~---------------------------------------~~~~~~~~~~~~~~lg 156 (287)
+ . ......+..+++.. .+...|.++.++..+|
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 0 0 11122222211110 1345788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.++...|++++|+..|+++++.+|+++.++ +++.++...|++++|+..++++++..
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999998886 89999999999999999999988764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-17 Score=138.55 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=165.7
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.+.+++..+|++..+++.+|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|+++++.
T Consensus 57 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 57 LFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 3446778889888899999999999999999999998888754332 256788899999999999999999999988
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh------h-------h-cCCChhHHHHHHHHHhhhcCCCc
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------A-------F-NGKPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~-------~-~~~~~~~a~~~~~~~~~~~~~~~ 148 (287)
.|.+. ..+..++.++...|++++|++.++++++..|... . + .......+...+++ .+...|++
T Consensus 137 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~ 213 (389)
T PRK11788 137 GDFAE--GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK-ALAADPQC 213 (389)
T ss_pred CcchH--HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhHCcCC
Confidence 77665 6788889999999999999999999888765311 1 1 23456777777777 67778888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++..+|.++...|++++|+..+++++..+|.+. ..+ .++.++...|++++|...++++++..
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999998888763 334 78899999999999999999988874
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=138.36 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=170.0
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+.+++-.+|...|.+.+.|+.+|..|....+.++-...|.+|..++|.++.+|+..|.+++-++++++|+.-|++++.++
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45566678889998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-h-------h-cCCChhHHHHHHHHHhhhcCCC------c
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-A-------F-NGKPTKTARSHGKKFQVTVKQE------T 148 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-------~-~~~~~~~a~~~~~~~~~~~~~~------~ 148 (287)
|++. -.+..++.+.++++.++++...|+.+.+..|... + + ..+.++.|...+.+ ++.+.|. +
T Consensus 425 pe~~--~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~-ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 425 PENA--YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK-AIELEPREHLIIVN 501 (606)
T ss_pred hhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH-HHhhcccccccccc
Confidence 9887 5677778888888899999999999999888422 1 1 13356777777776 6777776 5
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYM-QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+..+...|.+.. -.+++..|+..+.++++++|....++ .||.+..++|+.++|+++|++++...
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555555554433 34899999999999999999998887 89999999999999999999998763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-18 Score=139.21 Aligned_cols=201 Identities=18% Similarity=0.107 Sum_probs=175.0
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
++++..|+.+-.|+..|..|...|.+++|.++|.++..++|....+|...|..|...|+.++|+..|..+-++.|...
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-- 380 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-- 380 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---------cCCChhHHHHHHHHHhh---hcCC---CcHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF---------NGKPTKTARSHGKKFQV---TVKQ---ETSRILGN 154 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~~ 154 (287)
--...+|.-|...++++-|...|.+++.+.|..+.. ....+..|..+++.... ...+ .....+.+
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 345567778888999999999999999999954332 23356677777776311 1112 23566999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|.++.+.+.+++|+.+|++++.+.|.+...+ .+|.+|..+|+++.|+.+|.+++.+.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998887 89999999999999999999999884
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-17 Score=150.38 Aligned_cols=198 Identities=20% Similarity=0.194 Sum_probs=124.8
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++...|++...++.++..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++ .
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~ 636 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA--L 636 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--H
Confidence 44455666666666666666666666666666666666666666666666666666666666666666666666555 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
.+..++.++...|++++|+..|+++++..|... .+ .......+...++. .....|.++.++..+|.++..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS-LQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcCChHHHHHHHHHHHH
Confidence 556666666666666666666666666665311 11 12234455555554 344456666666777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|++++|+..|++++...|++.....++.++...|++++|...++++++.
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777777777776666644446677777777777777777776665
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=129.75 Aligned_cols=178 Identities=13% Similarity=0.032 Sum_probs=156.6
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+++...|++..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...+...
T Consensus 54 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 54 LDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999998643221
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
....+..+|.++...|++++|...+.+++...|. ++.++..+|.++...|++++
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--------------------------RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------------------ChHHHHHHHHHHHHcCCHHH
Confidence 1256778899999999999999999998877663 67788999999999999999
Q ss_pred HHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 168 AEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|..++++++...|.++..+ .++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999988776664 7889999999999999988776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=134.81 Aligned_cols=192 Identities=21% Similarity=0.171 Sum_probs=169.4
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
++++.+|....+|-.+|+-|...++...|+..|++|++.+|.+-.+|++||.+|.-++-+.=|+-+|+++....|+++
T Consensus 355 RALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs-- 432 (559)
T KOG1155|consen 355 RALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS-- 432 (559)
T ss_pred HHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch--
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+|..+|.+|.+.++.++|+++|.+++..... +..++..+|.+|.+.++.++|.
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------------------------e~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------------------------EGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------------------------chHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999987652 5688999999999999999999
Q ss_pred HHHHHHHhhC-------CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccccc
Q 023081 170 VVYRKAQLID-------PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQ 236 (287)
Q Consensus 170 ~~~~~al~~~-------~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 236 (287)
.+|.+.++.. |....+. .|+.-+.+.+++++|-.+...++.. ....+.+..++.++...+
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------ETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHhc
Confidence 9999998833 3333333 7999999999999999999888864 122256666777666554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=156.75 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=155.8
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHcCCHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS--------------ALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~g~~~~A 72 (287)
.+-+++..+|+++.+++.+|.++...|++++|+..|+++++.+|+... ....+|.++...|++++|
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 344577788888888888888888888888888888888888876532 123457778888888888
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hhcCCChhHHHHHHHHHhhh-
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AFNGKPTKTARSHGKKFQVT- 143 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~a~~~~~~~~~~- 143 (287)
+..|+++++.+|++. .++..+|.++...|++++|++.|+++++..|... .+.....+.+..+++.+...
T Consensus 371 ~~~~~~Al~~~P~~~--~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 371 ERLYQQARQVDNTDS--YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH
Confidence 888888888888776 6777788888888999999999999888887422 12222344455444432000
Q ss_pred -------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 144 -------VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 -------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...-....+..+|.++...|++++|+..|+++++.+|+++..+ .+|.++..+|++++|+..++++++..
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0001133566788889999999999999999999999998775 89999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-18 Score=147.37 Aligned_cols=177 Identities=12% Similarity=0.012 Sum_probs=153.9
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+-++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+ .....++.++...|++++|+..+++++...+ |+++..+..+|.++...|+++
T Consensus 406 ~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-------------------------p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 406 A--AAGITKLWITYYHTGIDDAIRLGDELRSQHL-------------------------QDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred h--hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-------------------------ccCHHHHHHHHHHHHhCCCHH
Confidence 6 3444556567778999999999999876642 346888999999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...+.+.....|...... .++..+...|+ +|...++..++..
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 99999999888888776665 78888888884 7888888877654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-16 Score=133.12 Aligned_cols=192 Identities=19% Similarity=0.145 Sum_probs=165.5
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh---HHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA---QESLDNVLI 96 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~~l~ 96 (287)
..+..+|.++...|++++|+..|+++++.+|....++..++.++...|++++|+..+++++...|.+. ....+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 56788999999999999999999999999998889999999999999999999999999999877542 123566789
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHcCCHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQET-SRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~ 166 (287)
.++...|++++|+..|+++++..|.. ..+ .....+.|...+++ .+..+|.+ ..++..++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER-VEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999988742 222 24467778888887 56666664 567889999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...+++++...|+......++.++...|++++|...++++++..
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999988666789999999999999999999999873
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=145.45 Aligned_cols=196 Identities=7% Similarity=-0.017 Sum_probs=174.3
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|.....++.+|.++...|++++|+.+|++++..+|........++......|++++|+..++++++.+|+ + ..+
T Consensus 536 ~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~--~a~ 612 (987)
T PRK09782 536 SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-A--NAY 612 (987)
T ss_pred hccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-H--HHH
Confidence 3345556778899999999999999999999999999998888878888788889999999999999999996 5 688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
..+|.++.+.|++++|+..|++++.+.|... ++ .....+.+...+++ ++..+|+++.+++++|.++...|
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~-AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER-AHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999533 22 23357888888888 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++++|+..|++++++.|+..... ..|.+.....+++.|.+.+.+.....
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999997775 89999999999999999999998874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=133.35 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=139.0
Q ss_pred ccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
...+.++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|
T Consensus 84 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 84 RNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-hh----hh--hcCCChhHHHHHHHHH------hhhcCCCcHHH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY-HG----EA--FNGKPTKTARSHGKKF------QVTVKQETSRI 151 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~----~~--~~~~~~~~a~~~~~~~------~~~~~~~~~~~ 151 (287)
+++...++. .+....+++++|+..|.+.+...+ .. .. +.+.... . ..+..+ .....|+.+.+
T Consensus 164 ~~~~~~~~~---~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~-~-~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 164 NDPYRALWL---YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISE-E-TLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred CCHHHHHHH---HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCH-H-HHHHHHHhcCCCcHHHHHHHHHH
Confidence 876322222 234456889999999987765432 21 11 1233221 1 122221 23455667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHH
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-NKA 185 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 185 (287)
|+.+|.++...|++++|+.+|+++++.+|.+ ...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 9999999999999999999999999999744 444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=117.56 Aligned_cols=183 Identities=15% Similarity=0.064 Sum_probs=157.3
Q ss_pred CccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 2 SQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 2 ~~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.++++.+.++|+.+|++..+|..++.+|...|+.+.|-+.|++|+.++|++.+++++.|..+..+|++++|...|++++.
T Consensus 52 ~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 52 AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 82 LCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 82 ~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
. |... ....+.++|.|..++|+.+.|...|+++++.+|+ .+.....++..++
T Consensus 132 ~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--------------------------~~~~~l~~a~~~~ 184 (250)
T COG3063 132 D-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--------------------------FPPALLELARLHY 184 (250)
T ss_pred C-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC--------------------------CChHHHHHHHHHH
Confidence 4 4221 1267888999999999999999999998888764 7888899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|+|..|..++++.....+-..... ....+-...|+-+.+..+=.+....
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999888777555554 4446667788877776665555554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-16 Score=122.69 Aligned_cols=188 Identities=15% Similarity=0.048 Sum_probs=150.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ES 90 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~ 90 (287)
.+..+..++.+|..+...|+++.|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++. ..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456778899999999999999999999999999998875 67899999999999999999999999999997651 12
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 91 LDNVLIDLYKKC--------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 91 ~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
.++.+|.++... |++++|+..|++++..+|...... .+...... ...........+|.+|...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----~a~~~~~~----~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP-----DAKKRMDY----LRNRLAGKELYVARFYLKR 179 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHc
Confidence 577888888876 889999999999999988532110 01100000 0000123345789999999
Q ss_pred CCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 163 GNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|++.+|+..+++++...|+.+ .++ .+|.++..+|++++|..+++.....
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999987753 444 8999999999999999998877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-17 Score=133.46 Aligned_cols=178 Identities=18% Similarity=0.222 Sum_probs=154.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
..+++.+|.+.++|..||.+....++-..||..++++++++|++..++..||..|...|.-.+|+.++.+.+...|...+
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~ 388 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH 388 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999877653211
Q ss_pred -----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 89 -----------------------------------------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 89 -----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
..+...||.+|...|+|++|+++|+.+|
T Consensus 389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL----------- 457 (579)
T KOG1125|consen 389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL----------- 457 (579)
T ss_pred ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH-----------
Confidence 1234455666666666666666666655
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHH
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~ 206 (287)
..+|++...|+.||-.+....+.++|+..|.+|+++.|.+..+ ++||.+++.+|.|++|..+|-
T Consensus 458 ---------------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 458 ---------------QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred ---------------hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 4555699999999999999999999999999999999999877 499999999999999999999
Q ss_pred HHHhcc
Q 023081 207 DVLLGK 212 (287)
Q Consensus 207 ~~l~~~ 212 (287)
.++...
T Consensus 523 ~AL~mq 528 (579)
T KOG1125|consen 523 EALSMQ 528 (579)
T ss_pred HHHHhh
Confidence 999876
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-16 Score=120.48 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=176.1
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.|.+..-++.+|..++..|++..|+..|..|++.+|++-.+++..|.+|...|+-.-|+.-+.+++++.|+.. .+...
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--AARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--HHHHH
Confidence 4556677899999999999999999999999999999999999999999999999999999999999999987 67778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchhhh-----------------------h-cCCChhHHHHHHHHHhhhcCCCcHH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHGEA-----------------------F-NGKPTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------~-~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.|.++.++|.++.|..-|+.++...|.... + .+.....++.+... .+++.|-++.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~-llEi~~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITH-LLEIQPWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHH-HHhcCcchhH
Confidence 899999999999999999999998872111 1 12245566677666 6889999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
.+...+.||...|++..|+..++.+-++..++... +.++.++...|+.+.++...+++++. +++|.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK 257 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHK 257 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---Ccchh
Confidence 99999999999999999999999999999998766 58999999999999999999999998 55664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-16 Score=126.94 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=155.4
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+-.+...+|.+++.|+..|++.+..+++++|+.-|++++.++|.++-++..++.+.+++++++++...|+.+....|+-+
T Consensus 383 F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 383 FNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch------hh-hh---------cCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH------GE-AF---------NGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~-~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
+.+...+.++..++++++|++.|+.++.+.|. +. .+ +......+...+++ +++++|..-.+
T Consensus 463 --Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K-A~e~Dpkce~A 539 (606)
T KOG0547|consen 463 --EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK-AIELDPKCEQA 539 (606)
T ss_pred --hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH-HHccCchHHHH
Confidence 89999999999999999999999999999884 11 11 12245667778877 89999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+..+|.+..++|+.++|+++|+++..+....
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999998876554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=113.72 Aligned_cols=125 Identities=9% Similarity=-0.040 Sum_probs=103.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 39 IVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 39 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..+|+++++.+|+. +..+|.++...|++++|+..|++++..+|.+. .++..+|.++...|++++|+..|++++++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45788888888864 56788888899999999999999998888877 78888888888899999999998887776
Q ss_pred cchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 119 IYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 119 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
+|. ++.+++++|.++...|++++|+..|++++...|+++..+ +.+.+...
T Consensus 88 ~p~--------------------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DAS--------------------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCC--------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 654 788889999999999999999999999999999888776 66665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-15 Score=114.25 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=164.6
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+..+++.+|...++.+.+|..+..+|..+.||+.-+..+. .|+. .-+...||.-|...|-++.|...|....+.
T Consensus 58 F~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 58 FLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 3457788888888889999999999999999988765554 4443 456778888888899999999888887764
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh-------------h-cCCChhHHHHHHHHHhhhcCCCc
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-------------F-NGKPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~a~~~~~~~~~~~~~~~ 148 (287)
..-.. .+...+..+|-...+|++|++.-++..++.+.... . .....+.+...+++ ++..+|+.
T Consensus 137 ~efa~--~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k-Alqa~~~c 213 (389)
T COG2956 137 GEFAE--GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK-ALQADKKC 213 (389)
T ss_pred hhhhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHhhCccc
Confidence 33222 46777888999999999999999998888763211 1 13356778888888 89999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+-..+|.++...|+|.+|++.++.+++.+|+. +.+. .|..||..+|+..+...++.++.+..
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999998 4454 89999999999999999999999875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=127.79 Aligned_cols=198 Identities=21% Similarity=0.205 Sum_probs=98.9
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--hhh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--SKQ 86 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~ 86 (287)
-+++...|.++..+..++.+ ...+++++|+..++++.+..+ ++..+..+..++...|+++++...++++.... |.+
T Consensus 68 ~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 68 EKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC
Confidence 35777788888888888888 789999999999999887664 45777788888999999999999999987654 344
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--------c-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------N-GKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
+ .++..+|.++.+.|++++|+..|+++++..|..... . ......+...++.+ ....|.++..|..+|.
T Consensus 146 ~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~-~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 146 A--RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL-LKAAPDDPDLWDALAA 222 (280)
T ss_dssp H--HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH-HHH-HTSCCHCHHHHH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH-HHHCcCHHHHHHHHHH
Confidence 5 688899999999999999999999999999953221 1 22344455566553 3333778888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++...|++++|+.+|++++..+|+++... .+|.++...|+.++|..++++++..
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred Hhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999998876 8999999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-15 Score=124.32 Aligned_cols=199 Identities=17% Similarity=0.205 Sum_probs=162.4
Q ss_pred hHhhcCCCCchH-HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch----
Q 023081 10 HVVHKLPPGDSP-YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---- 84 (287)
Q Consensus 10 ~~l~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---- 84 (287)
++.+..|++..+ ....+.++...|+++.|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+
T Consensus 143 ~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 143 RAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 456667766433 345588999999999999999999999999999999999999999999999977766654321
Q ss_pred --------------------------------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh--
Q 023081 85 --------------------------------------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-- 124 (287)
Q Consensus 85 --------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 124 (287)
+++ .+...++..+...|+.++|...++++++..++...
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~--~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~ 300 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV--ALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVL 300 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 111 24556688888999999999999999996664432
Q ss_pred -h---cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHH
Q 023081 125 -F---NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTE 200 (287)
Q Consensus 125 -~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~ 200 (287)
+ .......+....+. .+...|+++..+..+|.++...|++++|..+|+++++..|++.....++.++..+|+.++
T Consensus 301 l~~~l~~~~~~~al~~~e~-~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQ-QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HHhhccCCChHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 2 12345556666666 578899999999999999999999999999999999999999887799999999999999
Q ss_pred HHHHHHHHHhc
Q 023081 201 ARSVLEDVLLG 211 (287)
Q Consensus 201 A~~~~~~~l~~ 211 (287)
|..+|++++..
T Consensus 380 A~~~~~~~l~~ 390 (398)
T PRK10747 380 AAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=125.70 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=163.8
Q ss_pred hHhhcCCCCc-hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---chh
Q 023081 10 HVVHKLPPGD-SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL---CSK 85 (287)
Q Consensus 10 ~~l~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~ 85 (287)
++.+..|++. ......+.++...|+++.|...+++..+..|+++.++..++.++...|++++|.+.+.+..+. +|.
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 3556677765 455567999999999999999999999999999999999999999999999888888777643 111
Q ss_pred hh-------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-----
Q 023081 86 QA-------------------------------------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----- 123 (287)
Q Consensus 86 ~~-------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 123 (287)
.. ...+...++..+...|++++|.+.++++++..|+..
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 10 013456678889999999999999999999988655
Q ss_pred hhc------CCChhHHHHHHHHHhhhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCchHHHHHHHHHH
Q 023081 124 AFN------GKPTKTARSHGKKFQVTVKQETS--RILGNLGWAYMQKGNYTSAEVVYR--KAQLIDPDANKACNLSHCLI 193 (287)
Q Consensus 124 ~~~------~~~~~~a~~~~~~~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~l~~~~~ 193 (287)
.+. ......+...+++ .+...|+++ .....+|+++.+.|++++|.++|+ .+++..|++.....+|.++.
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~-~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEK-QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 221 2234556666665 688999999 899999999999999999999999 68888898877779999999
Q ss_pred hccCHHHHHHHHHHHHhc
Q 023081 194 KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 194 ~~g~~~~A~~~~~~~l~~ 211 (287)
.+|+.++|..+|++++..
T Consensus 382 ~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-15 Score=114.57 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=90.5
Q ss_pred hhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCC
Q 023081 142 VTVKQETS----RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGS 216 (287)
Q Consensus 142 ~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 216 (287)
+..+|..+ ..+-.+..|+..-|++.+|+....+++..+|++..++ ..+.+|.....|+.|+.-|+.+.+....+.
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 45556532 3344567788899999999999999999999998775 899999999999999999999999854444
Q ss_pred CchhHHHHHHHHHHhcccc---ccCCCccccccccchHHHHhhhHhhhhcccccc
Q 023081 217 TETKTINRVKELLQELEPW---QSIPPSLTTKKSSLEDAFLEGLDDLMNQWTPYR 268 (287)
Q Consensus 217 ~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (287)
.......++..+....+.. ...+...++.. .++.+.+.++...|+|..
T Consensus 376 ~~reGle~Akrlkkqs~kRDYYKILGVkRnAsK----qEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 376 RAREGLERAKRLKKQSGKRDYYKILGVKRNASK----QEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhcccccH----HHHHHHHHHHHHhcCCcc
Confidence 4445556666666555543 21222233333 778888899999999863
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=125.89 Aligned_cols=213 Identities=16% Similarity=0.189 Sum_probs=100.2
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.|+++..|..+|.+....++++.|+..|++++..++..+..+..++.+ ...+++++|+.+++++.+..++. ..+..
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---~~l~~ 115 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---RYLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc---chhhH
Confidence 378888888999999999999999999999999999888888888888 79999999999999998876543 45666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccc--h--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIY--H--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~--~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
.+.++...++++++...++++....+ . +..+ .....+.|...+++ ++..+|+++.++..+++++...|
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~-al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK-ALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH-HHHH-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCC
Confidence 77788999999999999999776442 1 1112 23456788888888 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
+++++...++......|+++..+ .+|.++..+|++++|+.+|++++.. .+.++.........+...+..
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~---~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL---NPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHT-----
T ss_pred ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc---ccccccccccccccccccccc
Confidence 99999999988888888887776 8999999999999999999999986 556666656666666666654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=115.85 Aligned_cols=215 Identities=19% Similarity=0.161 Sum_probs=186.2
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++.........|+.-|...+..+++..|+.+-+++|..+|++..++...|.++...|+.++|+-.|+.+..+.|..- .
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--~ 369 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--E 369 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--H
Confidence 44455567788899999999999999999999999999999999999999999999999999999999999999876 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhh--cC--------CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAF--NG--------KPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~--~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
.|..+..+|...|.+.+|...-+.++...|.. .++ .| ...+.|..++++ .+.++|....+-..++.++
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek-~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK-SLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh-hhccCCccHHHHHHHHHHH
Confidence 89999999999999999999999998877632 121 22 246778888888 8999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
...|.+.+++..+++.+...|+......||.++...+.+++|...|..++.. ++.+. ++.+.+..++..
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~----~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSK----RTLRGLRLLEKS 517 (564)
T ss_pred HhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---Cccch----HHHHHHHHHHhc
Confidence 9999999999999999999999887789999999999999999999999998 44443 344455555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=117.62 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=111.2
Q ss_pred HhhcCCCCchHHHHhHHhHHhhC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhchhhh
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEK-DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRV--DEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~p~~~ 87 (287)
+|..+|++..+|...|.++...| ++++++..+.+++..+|++..+|...+.++...|+. ++++.++.++++.+|++.
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy 142 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence 44555555555555555555554 345555555555555555555555555555555542 445555555555555554
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc---CC
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK---GN 164 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~ 164 (287)
.+|...+.++...|+++++++.+.++++ .+|.+..+|+..|.+.... |.
T Consensus 143 --~AW~~R~w~l~~l~~~~eeL~~~~~~I~--------------------------~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 143 --HAWSHRQWVLRTLGGWEDELEYCHQLLE--------------------------EDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------------------HCCCchhHHHHHHHHHHhcccccc
Confidence 4555555555555555555555555544 4555889999999988776 33
Q ss_pred H----HHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 165 Y----TSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 165 ~----~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+ ++++.+..+++..+|++..+| .++.++.. +++..+|...+.+++..
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 3 478888899999999998888 68888876 45667788888887764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=125.64 Aligned_cols=181 Identities=22% Similarity=0.198 Sum_probs=147.0
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS- 84 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 84 (287)
..|.-..+...+|..|..+|+++.|+..++.+++. .|........+|.+|...+++.+|+..|++++.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35666677788999999999999999999999987 344445556699999999999999999999998733
Q ss_pred ----hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 85 ----KQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 85 ----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
+++ ...+...|+.+|...|++++|..++++++++... .-....|+-...+.+++.++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~------------------~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK------------------LLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH------------------hhccChHHHHHHHHHHHHHH
Confidence 222 3367889999999999999999999999998542 01122233466788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-----CCch---HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 160 MQKGNYTSAEVVYRKAQLID-----PDAN---KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~-----~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++++++|..++++++++- ++++ ... +||.+|..+|++++|..+|++++...
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999998743 3332 222 89999999999999999999999875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-14 Score=122.83 Aligned_cols=224 Identities=18% Similarity=0.164 Sum_probs=173.0
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
+-+..+|+.+|.++.+|+.+|.+|..+|+.+++...+-.|--++|.+...|..++....++|++++|.-+|.++++.+|.
T Consensus 160 ~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 160 EILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred HHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-------h------hc--C----------------CC-----
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-------A------FN--G----------------KP----- 129 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~------~~--~----------------~~----- 129 (287)
+. .+....+.+|.+.|++..|...|.+++...|..+ + +. + ..
T Consensus 240 n~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e 317 (895)
T KOG2076|consen 240 NW--ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE 317 (895)
T ss_pred ch--HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc
Confidence 75 6788889999999999999999999998876100 0 00 0 00
Q ss_pred --------------h------------------------------------------------------------hHHHH
Q 023081 130 --------------T------------------------------------------------------------KTARS 135 (287)
Q Consensus 130 --------------~------------------------------------------------------------~~a~~ 135 (287)
+ ....+
T Consensus 318 d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e 397 (895)
T KOG2076|consen 318 DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLE 397 (895)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHH
Confidence 0 00001
Q ss_pred HHHHHhhhcC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 136 HGKKFQVTVK--Q-ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 136 ~~~~~~~~~~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.+..+....+ | +++..+..++..+...|++.+|+.+|..+....+... .+| .+|.||..+|.+++|+++|++++.
T Consensus 398 ~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 398 ALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 1111111111 2 2577888899999999999999999999988766654 344 899999999999999999999998
Q ss_pred cccCCCCchhHHHHHHHHHHhccc
Q 023081 211 GKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
.. +++....-...+++..++.
T Consensus 478 ~~---p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 478 LA---PDNLDARITLASLYQQLGN 498 (895)
T ss_pred cC---CCchhhhhhHHHHHHhcCC
Confidence 73 4444333444555555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=109.15 Aligned_cols=107 Identities=14% Similarity=-0.009 Sum_probs=100.1
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++..+|++ ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++
T Consensus 18 ~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~-- 92 (144)
T PRK15359 18 QLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP-- 92 (144)
T ss_pred HHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--
Confidence 467778764 677899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..+..+|.++...|++++|+..|+++++..|.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999998888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=132.16 Aligned_cols=200 Identities=10% Similarity=0.075 Sum_probs=157.5
Q ss_pred HhhcCCCCchHH----HH-hHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 11 VVHKLPPGDSPY----VR-AKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 11 ~l~~~p~~~~~~----~~-lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
....+|+....+ +. +| .+...|++++|+..|+++++..|.. ..+...+|.+|...|++++|+..|++++...|
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 335566554322 22 33 3467789999999999998876442 23445578899999999999999999988877
Q ss_pred hhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-----------------------hhhh-cCCChhHHHHHHH
Q 023081 85 KQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-----------------------GEAF-NGKPTKTARSHGK 138 (287)
Q Consensus 85 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------------------~~~~-~~~~~~~a~~~~~ 138 (287)
.+. .......++.++...|++++|+..++++....|. +..+ .....+.|...++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 541 1134566677788999999999999999887651 0011 2345677888888
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 139 KFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 139 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
. .+...|+++.++..+|.++...|++++|+..+++++..+|++.... .+|.++..+|++++|...++++++..
T Consensus 384 ~-al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 384 E-LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred H-HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7 6888999999999999999999999999999999999999998875 89999999999999999999999984
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-14 Score=119.02 Aligned_cols=208 Identities=15% Similarity=0.093 Sum_probs=167.6
Q ss_pred HhhcCCCCchHH-HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 11 VVHKLPPGDSPY-VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 11 ~l~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++.+|-+.+.+ +.+| ++...|+..+-.-+-.+.+...|..+-.|+..|.-|...|++++|..+|.++..++|...
T Consensus 270 lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-- 346 (611)
T KOG1173|consen 270 LLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-- 346 (611)
T ss_pred HHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc--
Confidence 556667665554 4455 555566666555555666777888888999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhhc-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAFN-GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..|...|..|.-.|+.+.|+.+|..|-++.|. |..|. -...+.|..++.. ++.+.|.+|.++..+|.+.+
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~-A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ-ALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH-HHhcCCCcchhhhhhhheee
Confidence 78999999999999999999999999998872 33342 4467888888887 89999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC----ch----HHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 161 QKGNYTSAEVVYRKAQLIDPD----AN----KACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~----~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
..+.|.+|..+|+.++..-++ .. ...+||.++.+++++++|+..|++++... +.++..+..+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~---~k~~~~~asi 495 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS---PKDASTHASI 495 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC---CCchhHHHHH
Confidence 999999999999999953222 21 12289999999999999999999999984 4444443333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-15 Score=127.47 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=166.3
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+--++...|++.-+++..|.+.+.+++|..|+.+|++++..+|.. +.....+|.|++.+|+.+.|+..|.++++++|.
T Consensus 152 ~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~ 231 (1018)
T KOG2002|consen 152 QFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT 231 (1018)
T ss_pred HHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh
Confidence 3445889999999999999999999999999999999999999876 567889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccchhhh---------hcCCChhHHHHHHHHHhhhc---CCCcHH
Q 023081 86 QAQESLDNVLIDLYKKCG---RLDEQIELLKQKLRMIYHGEA---------FNGKPTKTARSHGKKFQVTV---KQETSR 150 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~---~~~~~~ 150 (287)
.+ .+...||.+-.... .+..++..+.++...++..+. |....+..+...... ++.. .+--+.
T Consensus 232 ~v--~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~-ai~~t~~~~~~ae 308 (1018)
T KOG2002|consen 232 CV--SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH-AIKNTENKSIKAE 308 (1018)
T ss_pred hH--HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH-HHHhhhhhHHHHH
Confidence 76 66666666655443 477888899999988774322 123344444444433 2222 222466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HH-HHHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KA-CNLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
.++.+|.+|..+|+|++|..+|.+++..++++. -. +.||..+...|+.+.|..+|++++...+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 799999999999999999999999999999983 33 389999999999999999999999986443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=109.73 Aligned_cols=172 Identities=20% Similarity=0.212 Sum_probs=147.8
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
.+....+|++.+. +.++..+...|+-+.+.....++....|.+...+..+|......|++.+|+..++++....|++.
T Consensus 57 ~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~- 134 (257)
T COG5010 57 GAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW- 134 (257)
T ss_pred HHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh-
Confidence 4566778888888 88888899999988888888888888888888888899999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.+++.+|.+|.+.|++++|...|.+++++.|. ++.+..++|..+.-.|+++.|
T Consensus 135 -~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------------------------~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 135 -EAWNLLGAALDQLGRFDEARRAYRQALELAPN--------------------------EPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred -hhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------------------------CchhhhhHHHHHHHcCCHHHH
Confidence 88999999999999999999999998877664 788899999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
..++..+....+.+..+. +++.+....|++++|..+..+-+
T Consensus 188 ~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 188 ETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999999888777676664 89999999999998887665444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-16 Score=119.06 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=166.0
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
...++..| .++.+..+.++|....++..|+..|.+.+...|.++..+..+|.++..+++.++|+++|+.+++.+|.+.
T Consensus 247 qssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv- 324 (478)
T KOG1129|consen 247 QSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV- 324 (478)
T ss_pred HHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc-
Confidence 34555555 7889999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhh--------cCCChhHHHHHHHHH-hhhcCCC-cHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAF--------NGKPTKTARSHGKKF-QVTVKQE-TSRILGNLGW 157 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~--------~~~~~~~a~~~~~~~-~~~~~~~-~~~~~~~lg~ 157 (287)
+..-.++.-|+-.++.+-|+.+|++.+++.-.. ..| .+..++-+...+.+. ....+|+ -.++|+++|.
T Consensus 325 -EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 325 -EAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGF 403 (478)
T ss_pred -eeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccce
Confidence 666667778888899999999999999976422 222 233444455555442 2333343 4789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+....|++..|..+|+-++..++++..++ |||.+-.+.|+.++|..++..+.+..
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred eEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999998876 89999999999999999999888764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-14 Score=107.94 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=120.7
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRL 105 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 105 (287)
+-.|+..|+++......+... +|.. -+...++.++++..++++++.+|++. ..|..+|.+|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCH
Confidence 345677788777544432221 1111 11126778899999999999999888 7899999999999999
Q ss_pred HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCc
Q 023081 106 DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY-MQKGN--YTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 106 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~~~~ 182 (287)
++|+..|++++++.|. ++.++..+|.++ ...|+ +++|...++++++.+|++
T Consensus 90 ~~A~~a~~~Al~l~P~--------------------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 90 DNALLAYRQALQLRGE--------------------------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence 9999999988777664 888999999874 67777 589999999999999999
Q ss_pred hHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 183 NKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 183 ~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
..++ ++|.++..+|++++|+.+|+++++..+.+.+..
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 8776 899999999999999999999998865544443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-14 Score=127.01 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=160.9
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
.-..|+.+...+..+.+....|+++.|+..|+++++.+|..+.+...++.++...|+.++|+.++++++ .|.+.....
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~ 104 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRG 104 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHH
Confidence 345788999999999999999999999999999999999996444488899999999999999999999 554442245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-c--------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-N--------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
...+|.+|...|++++|++.|+++++.+|..... . ......+...+++ ....+|..... ..++.++...
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~-l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE-LAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH-hcccCcchHHH-HHHHHHHHhc
Confidence 5556889999999999999999999998853211 1 1223344444443 34444543332 3344444445
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccccccCCCc
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPS 241 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 241 (287)
++..+|+..+++++..+|++..++ .+..++...|-...|.+...+--... .+.+... -........++.. ..+..
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f--~~~~~~~-l~~~~~a~~vr~a-~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV--SAEHYRQ-LERDAAAEQVRMA-VLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc--CHHHHHH-HHHHHHHHHHhhc-ccccc
Confidence 556557777777777777666554 56666666666666665554433221 1111111 1111111111111 01122
Q ss_pred cccccccchHHHHhhhHhhhhccc
Q 023081 242 LTTKKSSLEDAFLEGLDDLMNQWT 265 (287)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~ 265 (287)
...+++...+..+..++.++..|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcc
Confidence 345566677889999999888777
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.6e-15 Score=110.48 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=114.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH-HHHcCC--HHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL-YKKCGR--LDEQ 108 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~-~~~~g~--~~~A 108 (287)
.++.++++..+++++..+|+++..|..+|.+|...|++++|+..|++++++.|+++ .++..+|.+ +...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence 56778999999999999999999999999999999999999999999999999988 888999986 467787 5999
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 184 (287)
...++++++.+|. ++.+++.+|..+...|++++|+.+++++++..|.+..
T Consensus 130 ~~~l~~al~~dP~--------------------------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN--------------------------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC--------------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999998887764 8999999999999999999999999999999887643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=127.25 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=133.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+........|+++++++.+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++...|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+ ...+.+|.++.+.|++++|+.+|++++...| +++.++..+|.++...|+.+
T Consensus 154 ~--~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--------------------------~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 154 A--REILLEAKSWDEIGQSEQADACFERLSRQHP--------------------------EFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred H--HHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--------------------------CcHHHHHHHHHHHHHcCCHH
Confidence 8 7888899999999999999999999887544 37889999999999999999
Q ss_pred HHHHHHHHHHhhCCCchH
Q 023081 167 SAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~ 184 (287)
+|...|++++....+-..
T Consensus 206 ~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 206 RARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHHHHHhhCcchH
Confidence 999999999987655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-14 Score=113.51 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=145.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
..++-.+-.++...+.+++|+..+.++|..+|.+..+|...+.++...| ++++++..+.+++..+|++. .+|+..+.
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny--qaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY--QIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch--HHhHHHHH
Confidence 3444455556677889999999999999999999999999999999998 68999999999999999987 67888888
Q ss_pred HHHHcCCH--HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 98 LYKKCGRL--DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 98 ~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
++...|+. ++++.+++++++.+| ++..+|...|+++...|++++|++++.++
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dp--------------------------kNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDA--------------------------KNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCc--------------------------ccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88777763 667777777666654 48999999999999999999999999999
Q ss_pred HhhCCCchHHH-HHHHHHHhc---cCH----HHHHHHHHHHHhcccCCCCch
Q 023081 176 QLIDPDANKAC-NLSHCLIKQ---ARY----TEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~~---g~~----~~A~~~~~~~l~~~~~~~~~~ 219 (287)
++.+|.+..+| +.+.++..+ |.+ ++++.+..+++...+.+...|
T Consensus 169 I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 169 LEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999888 778777665 333 478888889999876665555
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-14 Score=107.98 Aligned_cols=190 Identities=9% Similarity=0.073 Sum_probs=167.0
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC 102 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 102 (287)
..+|++|+..|-+.+|.+.++.++...|-. +.+..|+.+|.+..+...|+..+.+.++..|.++ .+...++.++..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--T~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--TYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--hhhhhhHHHHHHH
Confidence 569999999999999999999999988754 8899999999999999999999999999999988 7788889999999
Q ss_pred CCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 103 GRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 103 g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
+++++|.++|+.+++..|... .| .+...+-+..++++ .+.....+++.++++|.|....++++-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR-iLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR-ILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH-HHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999999999988422 12 35567778888888 577888899999999999999999999999999
Q ss_pred HHHhhCCCc---hHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 174 KAQLIDPDA---NKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 174 ~al~~~~~~---~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
+++....+. .++| |||.+....|++.-|...|+-++.. +.++.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ 429 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHG 429 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchH
Confidence 999876533 4556 9999999999999999999999975 45553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=120.62 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=138.7
Q ss_pred hHHhHHhhCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 25 AKHVQLVEKDPEAAIVL---FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~---~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
+-.+....+....+... ........|.++.++..||.+....|.+++|...++.+++..|++. .+...++.++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~~ 132 (694)
T PRK15179 55 ARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVKR 132 (694)
T ss_pred HHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHH
Confidence 33344444443333333 3333455688899999999999999999999999999999999998 789999999999
Q ss_pred cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
.+++++|+..+++++...|+ ++..++.+|.++...|++++|...|++++..+|+
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~--------------------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSS--------------------------SAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred hccHHHHHHHHHHHhhcCCC--------------------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 99999999999998877665 8999999999999999999999999999999999
Q ss_pred chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 182 ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 182 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.++ .+|.++..+|+.++|...|+++++..
T Consensus 187 ~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 187 FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 88887 99999999999999999999999985
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-14 Score=100.23 Aligned_cols=118 Identities=14% Similarity=0.010 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 40 VLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 40 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
..|++++..+|++..+...+|.++...|++++|+..+++++..+|.++ .++..+|.++...|++++|...++++++..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356777777887777778888888888888888888888888777766 677777888888888888888887766665
Q ss_pred chhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 120 YHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 120 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
|. ++..++.+|.++...|++++|+..|+++++.+|++...
T Consensus 82 p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PD--------------------------DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CC--------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 43 67777788888888888888888888888887777554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=124.38 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=151.5
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|-++....-...+....|+.++|+..+.++....|....++..+|.++...|++++|+..++++++..|+++ .+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Confidence 45666666777778889999999999999999988899988999999999999999999999999999999887 6788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
.++.++...|++++|+..++++++..|. ++. +..+|.++...|++++|+..++
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~--------------------------~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPD--------------------------KAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------------CHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999998877664 777 9999999999999999999999
Q ss_pred HHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 174 KAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 174 ~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
++++..|+++..+ .++.++...|..++|+..++++..
T Consensus 141 ~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 9999999998875 889999999999999988886554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=109.94 Aligned_cols=151 Identities=15% Similarity=0.034 Sum_probs=127.2
Q ss_pred chhhHhhcCCCCc---hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCHHHH
Q 023081 7 QPYHVVHKLPPGD---SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS---ALKDMAVVLKQQ--------DRVDEA 72 (287)
Q Consensus 7 ~~~~~l~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~--------g~~~~A 72 (287)
.+.+++...|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++|
T Consensus 55 ~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A 134 (235)
T TIGR03302 55 YFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREA 134 (235)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 4445778888876 57899999999999999999999999999998765 789999999876 889999
Q ss_pred HHHHHHHHHhchhhhHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 73 VEAIKSFRHLCSKQAQES---------------LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
+..+++++..+|++.... ....+|.+|...|++.+|+..+++++...|.
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------- 198 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD---------------- 198 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC----------------
Confidence 999999999999763111 1235788899999999999999999988763
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
.|..+.+++.+|.++...|++++|..+++......|
T Consensus 199 -------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 199 -------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 244578999999999999999999999988766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-12 Score=109.90 Aligned_cols=173 Identities=9% Similarity=-0.012 Sum_probs=124.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD-SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
..-+..+..|+....+...|.+....|+++.|..++.++.+..|+.. .+....+.++...|+++.|...++++++..|+
T Consensus 106 ~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~ 185 (409)
T TIGR00540 106 LIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR 185 (409)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 33445566676677788889999999999999999999999888874 46666799999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-hhh--------hcCCC----hhHHHHHHHHHhhhcCC----Cc
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-GEA--------FNGKP----TKTARSHGKKFQVTVKQ----ET 148 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~--------~~~~~----~~~a~~~~~~~~~~~~~----~~ 148 (287)
++ .+...++.++...|++++|.+.+.+..+.... ... +.+.. .......+.. .....| ++
T Consensus 186 ~~--~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~-~~~~~p~~~~~~ 262 (409)
T TIGR00540 186 HK--EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN-WWKNQPRHRRHN 262 (409)
T ss_pred CH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHCCHHHhCC
Confidence 98 78899999999999999999999999876321 110 10000 0000112222 122223 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+.++..+|..+...|++++|.+.++++++..|++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 6666666666666676666666666666654444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=98.34 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=108.6
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 74 EAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 74 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
+.+++++..+|++. .....++..+...|++++|...+++++..+|. ++.++.
T Consensus 4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~ 55 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--------------------------NSRYWL 55 (135)
T ss_pred hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--------------------------cHHHHH
Confidence 46889999999887 67888999999999999999999988777654 789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHH
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKEL 228 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (287)
.+|.++...|++++|..++++++..+|+++..+ .+|.++...|++++|+..|+++++..+.+........++...
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999999999997776 899999999999999999999999865444433343344433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=109.84 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=165.0
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++..+..++.+..+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-++..+--+++ .
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--E 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--H
Confidence 55666778888999999999999999999999999999988899999999999999999999999999988777777 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc----------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN----------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
+...++.+|....+...|++++.++..+.|...... |...+...-++. .-...|-+.++.-.+|..|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yd--syryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYD--SYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhh--cccccCcchHHHHHHHHHHH
Confidence 889999999999999999999999999888544321 222222233333 34556778888888999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...-+++|+.+|+++--+.|+...+. .++.|+.+.|+|+.|...|+..-...
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999999999988888776553 78999999999999999998776553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=96.51 Aligned_cols=127 Identities=15% Similarity=0.032 Sum_probs=102.2
Q ss_pred HHhc-hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 80 RHLC-SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 80 ~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
..+. ++.. +..+.+|..+...|++++|...|+....++|. +...|++||.+
T Consensus 27 ~~~~~~~~l--~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--------------------------~~~y~~gLG~~ 78 (157)
T PRK15363 27 LDDDVTQPL--NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--------------------------SFDYWFRLGEC 78 (157)
T ss_pred HCCChHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHH
Confidence 3444 4444 56777888889999999999999987777664 78889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
+..+|+|.+|+..|..++.++|+++... ++|.|+...|+.+.|...|+.++...-..+.+.....++...|..+..
T Consensus 79 ~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998875 999999999999999999999998754344555566667777766543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-13 Score=113.57 Aligned_cols=201 Identities=20% Similarity=0.216 Sum_probs=152.9
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK- 85 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~- 85 (287)
.|.-......+|.+|...+++.+|+..|++|+.+. |..+.++.+||.+|...|++++|..++++++++...
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 34334445569999999999999999999999643 445778999999999999999999999999887432
Q ss_pred ----hh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh-cCCCcHHHHHHHHHHH
Q 023081 86 ----QA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT-VKQETSRILGNLGWAY 159 (287)
Q Consensus 86 ----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~lg~~~ 159 (287)
.+ .......++.++..++++++|..++++++++... +.. .++..+....++|.+|
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~-------------------~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD-------------------APGEDNVNLAKIYANLAELY 377 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh-------------------hccccchHHHHHHHHHHHHH
Confidence 11 1245778899999999999999999999988531 111 1223577899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC-----c---h-HHHHHHHHHHhccCHHHHHHHHHHHHhcc-cCCCCc---hhHHHHHH
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPD-----A---N-KACNLSHCLIKQARYTEARSVLEDVLLGK-LSGSTE---TKTINRVK 226 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~-----~---~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~---~~~~~~~~ 226 (287)
..+|++++|.+.|++++.+... + . ..|+||..+.+.+++.+|...|.+++.+. ..++++ ...+....
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 9999999999999999986421 1 2 23589999999999999999999988765 223333 33444444
Q ss_pred HHHHhccc
Q 023081 227 ELLQELEP 234 (287)
Q Consensus 227 ~~l~~l~~ 234 (287)
.....++.
T Consensus 458 ~~Y~~~g~ 465 (508)
T KOG1840|consen 458 ALYRAQGN 465 (508)
T ss_pred HHHHHccc
Confidence 44455554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.9e-13 Score=115.06 Aligned_cols=200 Identities=15% Similarity=0.069 Sum_probs=124.0
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD---RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
-..+|++|.+...++.-++-.|+|..+..+...++.... -.++.++.+|.+|..+|++++|..+|.+++..+|++..
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 345666666666666666666666666666666665442 22445666666666666666666666666666665521
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhhc----------------------------------
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAFN---------------------------------- 126 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~---------------------------------- 126 (287)
-...-+|++|+..|+++.|+.+|+++++..|+ |..|.
T Consensus 343 -l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 343 -LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred -ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 23445666666666666666666666666552 11111
Q ss_pred ----CCChhHHHHHHHHH----hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCch------HHHH
Q 023081 127 ----GKPTKTARSHGKKF----QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI-----DPDAN------KACN 187 (287)
Q Consensus 127 ----~~~~~~a~~~~~~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~------~~~~ 187 (287)
.........++... .....+-.+++++++|..++..|++.+|...|+.++.. +++.. .-+|
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 11111112222221 11122345778888888888888999999888888875 22221 1248
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 188 LSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 188 l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|.++..+++++.|.+.|..+++.+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 8888888888888888888888764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=109.21 Aligned_cols=225 Identities=14% Similarity=0.104 Sum_probs=177.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH----------
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ---------- 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------- 88 (287)
..+-+.-+.++...|++++|...--..+++++.+..+++-.|.+++..++.+.|+.+|++++.++|++.-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 3455667788888999999999999999999999999999999999999999999999999999997621
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
...+..-|+-.++.|+|.+|.++|..+|.++|... ..++..+.+.+.+..+.|+..+|
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~----------------------~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK----------------------KTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc----------------------chhHHHHHHhHhhhcccCCchhh
Confidence 12355668888999999999999999999998411 11577899999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc---ccCCCcccc
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW---QSIPPSLTT 244 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~ 244 (287)
+.....++.+++....++ ..|.|+..++++++|++.|+++++.... ....+...++...|+.-... ...+....+
T Consensus 307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~a 385 (486)
T KOG0550|consen 307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGISRNA 385 (486)
T ss_pred hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhc
Confidence 999999999999998776 7899999999999999999999998532 44556667777666644332 111111111
Q ss_pred ccccchHHHHhhhHhhhhcccccccc
Q 023081 245 KKSSLEDAFLEGLDDLMNQWTPYRSR 270 (287)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 270 (287)
. .+++.+....+...|+|....
T Consensus 386 s----~~eikkayrk~AL~~Hpd~~a 407 (486)
T KOG0550|consen 386 S----DDEIKKAYRKLALVHHPDKNA 407 (486)
T ss_pred c----cchhhhHHHHHHHHhCCCcCc
Confidence 1 144556666666677776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-12 Score=98.23 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=158.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh---hHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---AQESLDNVL 95 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~~l 95 (287)
.+.-|..|.-++..++.++|++.|...++.+|...+++..||.+|...|+.+.|+.+-+..+.. |+- ....+...+
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL 113 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQL 113 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444677888999999999999999999999999999999999999999999999998887764 422 222467789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccc--------hhhhh-cCCChhHHHHHHHHHhhhcCCC-----cHHHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIY--------HGEAF-NGKPTKTARSHGKKFQVTVKQE-----TSRILGNLGWAYMQ 161 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~-~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~lg~~~~~ 161 (287)
|.-|...|-++.|...|....+... ....| ..+.++.|++..+++ ....+. -+..++.++..+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L-~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL-VKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHcCCccchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999887433 22333 244567777776653 333333 25678899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+++.|...++++++.+|....+. .+|.++...|++..|++.++.+++.+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 9999999999999999999998774 89999999999999999999999873
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-12 Score=108.26 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=70.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
..+..+|+|+.+.++++..|..+++.+.|.+..+++++.+ .+++.+|..+|.++...+++.+|+.+...+++-.|+|
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 4677899999999999999999999999999999999994 5668999999999999999999999999998887763
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=106.66 Aligned_cols=127 Identities=25% Similarity=0.282 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
-+..-|.-+...++|.+|+..|.+++.++|.++ .++...+.+|.+.|.++.|++.++.++.++|.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------------- 147 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------------- 147 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-------------
Confidence 344566777778888999999999999988887 67888888888889999999888888777764
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHH---HHHHHHHHHH
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYT---EARSVLEDVL 209 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~---~A~~~~~~~l 209 (287)
+..+|.+||.+|..+|++++|++.|+++|.++|++..++ +|..+-.+++... .+...++.+.
T Consensus 148 -------------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~ 213 (304)
T KOG0553|consen 148 -------------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAG 213 (304)
T ss_pred -------------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhh
Confidence 678888899999999999999999999999999888776 7777766666555 3444444333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-12 Score=112.16 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=148.3
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
....+..|...+..|++++|...+.++|+.+|.++.+|+.||.+|.+.|+.+++...+-.+..++|++. ..|..++..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHH
Confidence 456778888899999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
..++|++..|.-+|.++++..|. +....+..+.+|.++|+...|...|.+++..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~--------------------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS--------------------------NWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc--------------------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 99999999999999999888774 6777888999999999999999999999999
Q ss_pred CCCch------HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 179 DPDAN------KACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 179 ~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|... .++..+..+...++-+.|++.++.++..
T Consensus 271 ~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 271 DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 98321 2235677788888889999999999984
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-12 Score=105.84 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=162.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-----hHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-----AQESLD 92 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~ 92 (287)
.....-.+|.......++..|++.|..++.++ .+...+.+.+.+|...|.+.+.+....++++..-.. ......
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999 888889999999999999999999999988765432 112234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccch----------------------------------hhh-hcCCChhHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYH----------------------------------GEA-FNGKPTKTARSHG 137 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------------~~~-~~~~~~~~a~~~~ 137 (287)
..+|..|...++++.|+.+|.+++..... |.. |....+..|..++
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 44777899999999999999998874221 111 1233467777777
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.. ++..+|+++..+.+.|.||...|.+..|+...+.+++++|++...| .-|.++..+.+|+.|...|+++++..
T Consensus 382 te-AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 382 TE-AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HH-HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77 8999999999999999999999999999999999999999998887 78999999999999999999999874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-11 Score=104.62 Aligned_cols=201 Identities=11% Similarity=0.073 Sum_probs=136.4
Q ss_pred hhhHhhcCCCC---chHHHHh-HHhHHhhCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 8 PYHVVHKLPPG---DSPYVRA-KHVQLVEKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 8 ~~~~l~~~p~~---~~~~~~l-g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
..+.+...|+. +..++.+ +.+....|+++.|..+|.++.+..|+... .....+.++...|++++|+..++++.+.
T Consensus 103 A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~ 182 (398)
T PRK10747 103 VEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV 182 (398)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34555555553 4555554 66669999999999999999999998743 3345589999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh---------hhhc--------CCChhHHHHHHHHHhhhcC
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG---------EAFN--------GKPTKTARSHGKKFQVTVK 145 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~--------~~~~~~a~~~~~~~~~~~~ 145 (287)
.|+++ .+...++.+|...|++++|++.+.+..+..... .++. ....+......+. .....
T Consensus 183 ~P~~~--~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~-lp~~~ 259 (398)
T PRK10747 183 APRHP--EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN-QSRKT 259 (398)
T ss_pred CCCCH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh-CCHHH
Confidence 99998 789999999999999999998888887654321 0110 0000111111111 01112
Q ss_pred CCcHHHHHHHHHHHHHc-------------------------------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHH
Q 023081 146 QETSRILGNLGWAYMQK-------------------------------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLI 193 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~-------------------------------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~ 193 (287)
|+++.+...++..+... ++++++++..++.++..|+++... .+|.++.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 33444444444444444 445555555555555666666654 7888888
Q ss_pred hccCHHHHHHHHHHHHhc
Q 023081 194 KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 194 ~~g~~~~A~~~~~~~l~~ 211 (287)
..+++++|..+|+++++.
T Consensus 340 ~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HCCCHHHHHHHHHHHHhc
Confidence 888888888888888876
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=108.21 Aligned_cols=193 Identities=8% Similarity=-0.014 Sum_probs=147.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
+|+.+.++..+|..+...|+++.+...+.++....|.. .+.....+.++...|++++|...++++++.+|++. ..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HH
Confidence 68999999999999999999999988888888776644 45677778899999999999999999999999876 33
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----hccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKL----RMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al----~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
+.. +..+...|++..+.....+++ ...|. +..+ ....+..+...+++ .+..+|+++.++..+|.+
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~-al~~~p~~~~~~~~la~i 157 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR-ALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCcHHHHHHHHH
Confidence 332 334444444433333333333 23331 1112 23356778887777 788899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchH-----HHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANK-----ACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+...|++++|+.++++++...|..+. .+.++.++..+|++++|+..|++++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999999998774422 237999999999999999999999765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-12 Score=106.56 Aligned_cols=214 Identities=14% Similarity=0.066 Sum_probs=165.3
Q ss_pred ccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
|.-+..++..+|++.+.|+..-++.....+++.|..+|.++....|.- .+|+.-+.....+++.++|+..++++++..|
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe-Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE-RVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc-hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 334445566666666666666666666667777777776666655544 6777778888888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc---------CCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------GKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
+.. .+|..+|+++.++++.+.|.+.|...++..|....++ ....-.|...+.+ +...+|++...|...
T Consensus 683 ~f~--Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr-arlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 683 DFH--KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR-ARLKNPKNALLWLES 759 (913)
T ss_pred chH--HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH-HHhcCCCcchhHHHH
Confidence 877 8999999999999999999999999999988655542 1134556666766 778899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCch------------------------------HH-HHHHHHHHhccCHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDAN------------------------------KA-CNLSHCLIKQARYTEARSV 204 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~-~~l~~~~~~~g~~~~A~~~ 204 (287)
..+-.+.|..+.|.....+|++..|.+. .. ..+|..+....+++.|..+
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998666543 11 2567778888899999999
Q ss_pred HHHHHhcccCCCCchhHH
Q 023081 205 LEDVLLGKLSGSTETKTI 222 (287)
Q Consensus 205 ~~~~l~~~~~~~~~~~~~ 222 (287)
|.++++..+...+.|-.+
T Consensus 840 f~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHHccCCccchHHHHH
Confidence 999999865555555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-12 Score=105.52 Aligned_cols=205 Identities=11% Similarity=0.073 Sum_probs=160.4
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
..++..|+....|+.+|+++...++.+.|...|...++.-|..+..|..++.+--..|...+|...++++.-.+|++.
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-- 753 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-- 753 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc--
Confidence 356677888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc---------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
.+|.....+-.+.|+.+.|.....++++-.|..-.++ ++......+ ++....+++.++...|.+++
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D-----ALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID-----ALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH-----HHHhccCCchhHHHHHHHHH
Confidence 6777777777788888888888888888777422211 111122222 34444668999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhH
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKT 221 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 221 (287)
...++++|.++|.+++..+|++.++| .+-..+...|.-++-.+.+.++....+.....|.+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 99999999999999999999999998 77788889999999999999999875544455544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-12 Score=101.75 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
.|....+++..|..++..|++++|+..++..+...|+|+ .++...++++...++..+|.+.+++++..+|.
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------- 372 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDPN------- 372 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------
Confidence 367778888888888888888888888888888888887 57777888888888888888888888888774
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
.+.++.++|.++.+.|++.+|+..++..+..+|+++..| .|+.+|..+|+..+|...+.+
T Consensus 373 -------------------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 373 -------------------SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred -------------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 577788888888888888888888888888888888887 788888888888888877777
Q ss_pred HHhc
Q 023081 208 VLLG 211 (287)
Q Consensus 208 ~l~~ 211 (287)
....
T Consensus 434 ~~~~ 437 (484)
T COG4783 434 GYAL 437 (484)
T ss_pred HHHh
Confidence 6654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=107.60 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=110.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhchhhhHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFR----HLCSKQAQESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~~ 93 (287)
..+..+..|.++...|++++|+..+++++..+|++..++.. +..+...|+...+.....+++ ...|... ....
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 118 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW--YLLG 118 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH--HHHH
Confidence 34456777888899999999999999999999988766664 445544444333333333333 2334333 3555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCc----HHHHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQET----SRILGNLGWAYM 160 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~ 160 (287)
.++.++..+|++++|...+++++++.|.. .++ .....+.+..++++ .+...|.+ ...+..+|.++.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~-~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES-WRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh-hhhccCCCcchhHHHHHHHHHHHH
Confidence 67778888888888888888888887742 122 23356677777766 45554432 345678999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 023081 161 QKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~ 181 (287)
..|++++|+..|++++...|.
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HCCCHHHHHHHHHHHhccccC
Confidence 999999999999999877664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-13 Score=102.15 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=93.0
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.+-.-|.-....++|.+|+..|.+||+++|+++..|.+.|.+|.++|.++.|++-++.++.++|... ..|..+|.+|.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys--kay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS--KAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH--HHHHHHHHHHH
Confidence 3455677888999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred HcCCHHHHHHHHHHHHhccch
Q 023081 101 KCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+|++++|++.|+++++++|+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCC
Confidence 999999999999999988886
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=91.84 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---------
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------- 125 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------- 125 (287)
.+-....+....|+.+-|..++++.....|+.. .+...-|..+...|++++|+++|+..++-+|...+.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 333444444555555555555555555555444 444444555555555555555555555555532221
Q ss_pred -cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhcc---CHHH
Q 023081 126 -NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQA---RYTE 200 (287)
Q Consensus 126 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g---~~~~ 200 (287)
.|+.. .++..+.. -+...+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+ .+|.++.-+| +..-
T Consensus 132 a~GK~l-~aIk~ln~-YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNL-EAIKELNE-YLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcH-HHHHHHHH-HHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 12222 22222222 2444566999999999999999999999999999999999999887 8998887666 5678
Q ss_pred HHHHHHHHHhccc
Q 023081 201 ARSVLEDVLLGKL 213 (287)
Q Consensus 201 A~~~~~~~l~~~~ 213 (287)
|.++|.++++..+
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999854
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-12 Score=94.24 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
..+...+-.....+|++..+ .+++..+...|+-+.+..+..++...+|.+. .+...+|...+..|++..|+..++++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33555555777788999888 9999999999999999999999988888876 56666899999999999999999998
Q ss_pred HhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 116 LRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 116 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
....|. +..+|+.+|.+|.+.|++++|...|.+++++.|..+.+. |+|..+.-
T Consensus 127 ~~l~p~--------------------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 127 ARLAPT--------------------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred hccCCC--------------------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 877664 899999999999999999999999999999999998886 99999999
Q ss_pred ccCHHHHHHHHHHHHhc
Q 023081 195 QARYTEARSVLEDVLLG 211 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~ 211 (287)
.|+++.|..++..+...
T Consensus 181 ~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 181 RGDLEDAETLLLPAYLS 197 (257)
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 99999999999999876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-13 Score=93.88 Aligned_cols=105 Identities=14% Similarity=0.023 Sum_probs=99.5
Q ss_pred hcC-CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 13 HKL-PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 13 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
... ++.-+..|.+|..+...|++++|...|+-+...+|.+...|++||.++...|++.+|+..|.+++.++|+++ ..
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp--~~ 105 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP--QA 105 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hH
Confidence 344 677788999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
....|.++...|+.+.|.+.|+.++...
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-11 Score=98.80 Aligned_cols=174 Identities=18% Similarity=0.110 Sum_probs=151.3
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|....+.|..+..++..|++++|...++..+...|+++..+...+.++...++..+|.+.+++++.++|+.. .+.
T Consensus 300 ~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~ 377 (484)
T COG4783 300 RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQ 377 (484)
T ss_pred HhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHH
Confidence 344788899999999999999999999999999999999999999999999999999999999999999999887 689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+|++|.+.|++.+|+..++..+..+|. ++..|..||..|..+|+-.+|...+
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~--------------------------dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPE--------------------------DPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC--------------------------CchHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999999999999999987766554 8999999999999999999887654
Q ss_pred HHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 173 RKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 173 ~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+..+...|++++|+..+..+.+....+..+| .++...+..+.
T Consensus 432 ----------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~---aR~dari~~~~ 473 (484)
T COG4783 432 ----------------AEGYALAGRLEQAIIFLMRASQQVKLGFPDW---ARADARIDQLR 473 (484)
T ss_pred ----------------HHHHHhCCCHHHHHHHHHHHHHhccCCcHHH---HHHHHHHHHHH
Confidence 4566778999999999999998865555555 44554444444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-12 Score=101.61 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=162.4
Q ss_pred chhh-HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYH-VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~-~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
++|+ ++..+.....+++++|..+...|+.++|+++|-+...+--++++++..++.+|..+.+..+|++++.++..+-|+
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 4454 677777888999999999999999999999999988777788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh---hhh------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG---EAF------NGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++ .+...++.+|-+.|+-..|..++-......|-. ..| ..+.++.++.++++ +.-+.|+.......++
T Consensus 591 dp--~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek-aaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DP--AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK-AALIQPNQSKWQLMIA 667 (840)
T ss_pred CH--HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-HHhcCccHHHHHHHHH
Confidence 98 889999999999999999999988888888732 112 23356778888888 6778898888889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
.|+.+.|+|.+|...|+..-...|.+.... .|.++...+|-
T Consensus 668 sc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999987665 66677666663
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=111.39 Aligned_cols=168 Identities=11% Similarity=-0.009 Sum_probs=138.1
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+.+.+.++++.+|+++.+...+..++...|+.++|+.++++++...|........+|.++...|++++|++.|+++++.+
T Consensus 53 Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 53 VLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44556678999999865555888888889999999999999994444455556666889999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-----c--C-CChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-----N--G-KPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~--~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
|+++ .++..++.+|...++.++|++.++++...+|....+ . + .....+...+++ .+..+|++..++..+
T Consensus 133 P~n~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek-ll~~~P~n~e~~~~~ 209 (822)
T PRK14574 133 PTNP--DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE-AVRLAPTSEEVLKNH 209 (822)
T ss_pred CCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH-HHHhCCCCHHHHHHH
Confidence 9987 677788999999999999999999999999853322 1 1 123236666666 788999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~ 174 (287)
..++...|-...|++..++
T Consensus 210 ~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHcCCcHHHHHHHHh
Confidence 9999999999999977665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-11 Score=92.05 Aligned_cols=176 Identities=19% Similarity=0.163 Sum_probs=128.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~ 93 (287)
++..++..|...+..|++.+|+..|++++...|.. ..+.+.+|.++...|+++.|+..+++.++..|+++ ...+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988765 67899999999999999999999999999999764 224566
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 94 VLIDLYKKC-----------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 94 ~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
.+|.++... +...+|+..|+..+...|++. ....+...+..+ ...-..--+.+|..|.+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-----y~~~A~~~l~~l----~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-----YAEEAKKRLAEL----RNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-----THHHHHHHHHHH----HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHc
Confidence 677766543 334588999999999988522 111222211110 000133345689999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchHH---H-HHHHHHHhccCHHHHH
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKA---C-NLSHCLIKQARYTEAR 202 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~---~-~l~~~~~~~g~~~~A~ 202 (287)
|.+..|+..++.+++..|+.+.. . .++.++..+|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999998544 2 7999999999988554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-12 Score=111.50 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=141.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL 111 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 111 (287)
+++...|...|-+++++++..+.++..||..|+..-+...|..+|+++.+++|.+. ..+-..++.|.+..+++.|...
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHH
Confidence 34577788888888888888888888888888887788888888888888888776 6777778888888888888887
Q ss_pred HHHHHhccchhhh----------h-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 112 LKQKLRMIYHGEA----------F-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 112 ~~~al~~~~~~~~----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
.-.+-+..|.... + .......+...++. ++..+|++...|..+|.+|...|++.-|++.|.++..++|
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs-ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS-ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 6666665552211 1 12234556666665 7888888999999999999999999999999999999999
Q ss_pred CchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 181 DANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 181 ~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+.-. +..+.+...+|++.+|+..+...+...
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 98554 588889999999999999999888653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-11 Score=94.89 Aligned_cols=201 Identities=14% Similarity=0.058 Sum_probs=151.1
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------------------------
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVL-------------------------- 63 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-------------------------- 63 (287)
......|++......+|.++...|++.+|+..|+++...+|....+.-..|.++
T Consensus 223 e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 345667999999999999999999999999999999999988655544433333
Q ss_pred --------HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-hhh-------h-c
Q 023081 64 --------KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-GEA-------F-N 126 (287)
Q Consensus 64 --------~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~-------~-~ 126 (287)
+..+++..|+.+-+++++.+|++. ..+...|.++...|+.++|+-.|+.++.+.|. -.. | .
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~--~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNH--EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccc--hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 344557778888888888888776 67778888888888888888888888888762 122 2 1
Q ss_pred CCChhHHHHHHHHHhhhcCCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHH
Q 023081 127 GKPTKTARSHGKKFQVTVKQETSRILGNLG-WAYMQ-KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARS 203 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~ 203 (287)
.+..++|.-.... ....-|.++.++..+| .++.. ----++|.+++++++.+.|+...+ ..++.++...|++++++.
T Consensus 381 ~~~~kEA~~~An~-~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 381 QKRFKEANALANW-TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hchHHHHHHHHHH-HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 2334444444443 4555566777777665 33332 233478999999999999999665 489999999999999999
Q ss_pred HHHHHHhccc
Q 023081 204 VLEDVLLGKL 213 (287)
Q Consensus 204 ~~~~~l~~~~ 213 (287)
.+++.+...+
T Consensus 460 LLe~~L~~~~ 469 (564)
T KOG1174|consen 460 LLEKHLIIFP 469 (564)
T ss_pred HHHHHHhhcc
Confidence 9999998753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-11 Score=90.00 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=129.9
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+-...|.+...--.-|..+...|++++|+++|+..++.+|.+...+...-.+...+|+..+|++.+...++..+.+. +
T Consensus 78 L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~--E 155 (289)
T KOG3060|consen 78 LRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ--E 155 (289)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH--H
Confidence 34567988888888899999999999999999999999999988888888888999999999999999999999888 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---CHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG---NYTS 167 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~ 167 (287)
+|..++.+|...|+|++|.-++++++-+.|. ++-.+..+|.+++-+| ++.-
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~--------------------------n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPF--------------------------NPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC--------------------------cHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999998877774 6777777888877666 5778
Q ss_pred HHHHHHHHHhhCCCchHH
Q 023081 168 AEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~ 185 (287)
|.++|.++++++|.+...
T Consensus 210 arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHHhChHhHHH
Confidence 999999999999966444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-10 Score=90.94 Aligned_cols=183 Identities=12% Similarity=0.003 Sum_probs=138.5
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSA---LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~ 93 (287)
++..++..|......|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++. ..+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56678899999999999999999999999999987544 589999999999999999999999999997642 13566
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 94 VLIDLYKKCG---------------R---LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 94 ~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
.+|.++...+ + ..+|+..|+..++..|+..-. ..+...+.. +...-..--+.+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya-----~~A~~rl~~----l~~~la~~e~~i 181 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT-----TDATKRLVF----LKDRLAKYELSV 181 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH-----HHHHHHHHH----HHHHHHHHHHHH
Confidence 6776643332 1 357889999999999953211 111111110 000012234468
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchH---HH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANK---AC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
|..|.+.|.|..|+.-++.+++..|+.+. +. .++.+|..+|..++|..+.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 99999999999999999999999888743 33 78999999999999988776543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.7e-12 Score=99.82 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=136.3
Q ss_pred CccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCH
Q 023081 2 SQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------------DSALKDMAVVLKQQDRV 69 (287)
Q Consensus 2 ~~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~ 69 (287)
+.+..+..++++.++.+.++.+..|.++...++.+.|+.+|++++.++|+. ...+..-|.-.++.|++
T Consensus 186 ~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 345566778899999999999999999999999999999999999999886 33455678889999999
Q ss_pred HHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC
Q 023081 70 DEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 70 ~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
..|.+.|..++.++|++. ...++...+.+....|+..+|+...+.++++++.
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-------------------------- 319 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-------------------------- 319 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH--------------------------
Confidence 999999999999999763 3356888899999999999999999999988774
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
...++...|.++...++|++|.+.|+++++...+
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5777899999999999999999999999998776
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.9e-12 Score=105.98 Aligned_cols=175 Identities=12% Similarity=-0.001 Sum_probs=134.1
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-.++.++ .|+++..|-.+|.+.....-|++|.++.+. ....+...+|......++++++...++..++++|-.
T Consensus 446 i~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq 518 (777)
T KOG1128|consen 446 INRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ 518 (777)
T ss_pred HHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc
Confidence 3344555 455677777777665555444444444432 223456666766677788888888888888888865
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
. ..|+.+|-+..+.++++.|.+.|..++.+.| ++..+|++++..|...|+-.
T Consensus 519 ~--~~wf~~G~~ALqlek~q~av~aF~rcvtL~P--------------------------d~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 519 L--GTWFGLGCAALQLEKEQAAVKAFHRCVTLEP--------------------------DNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred h--hHHHhccHHHHHHhhhHHHHHHHHHHhhcCC--------------------------CchhhhhhhhHHHHHHhhhH
Confidence 5 6777788888888888888888887666555 48999999999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCC
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGS 216 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 216 (287)
+|...++++++.+-++...| |...+..+.|.+++|+..+.+.+.......
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99999999999997778888 899999999999999999999998864444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=101.57 Aligned_cols=98 Identities=15% Similarity=0.018 Sum_probs=93.1
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
+...|...+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++ .++..+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999999999999999999999887 789999999999
Q ss_pred cCCHHHHHHHHHHHHhccch
Q 023081 102 CGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~ 121 (287)
.|++++|+..|+++++++|.
T Consensus 83 lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999988875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-09 Score=101.70 Aligned_cols=155 Identities=13% Similarity=0.084 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--cchhhhh------
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM--IYHGEAF------ 125 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~------ 125 (287)
.+..+...|.+.|++++|.+.|+++.+.+. .+. ..++.+...|.+.|++++|..+|+.+.+. .|+...|
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~--~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP--EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333344444444444444444444433321 111 23444444555555555555555554443 2222221
Q ss_pred --cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHH
Q 023081 126 --NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEA 201 (287)
Q Consensus 126 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A 201 (287)
.....+.+...++.+.....+.+..++..+...|.+.|++++|...|+++... .|+...+..|...|.+.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 12234445544444222222335566777777777777777777777766543 23322222567777777777777
Q ss_pred HHHHHHHHhc
Q 023081 202 RSVLEDVLLG 211 (287)
Q Consensus 202 ~~~~~~~l~~ 211 (287)
.++|+++...
T Consensus 739 lelf~eM~~~ 748 (1060)
T PLN03218 739 LEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHc
Confidence 7777776654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=99.83 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARS 135 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~ 135 (287)
+...|..++..|++++|+..|.++++.+|++. .++..+|.+|...|++++|+..+++++.++|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-------------- 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELDPS-------------- 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------
Confidence 55678889999999999999999999999988 78999999999999999999999998887664
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhc
Q 023081 136 HGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQ 195 (287)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~ 195 (287)
++.+++.+|.++...|++++|+..|++++.++|++.... .++.|...+
T Consensus 69 ------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 ------------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999998775 666665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-11 Score=98.73 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=129.4
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAG--------------------------DRVDSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~ 74 (287)
+...+|..+...++++.|+.+|++++... |.....-..-|..++..|+|..|+.
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 34457778888899999999999988543 2222333346888889999999999
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|.+++..+|+++ .++.+.+.+|.+.|.+..|+...+.+++++|. ....|..
T Consensus 380 ~YteAIkr~P~Da--~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~--------------------------~~kgy~R 431 (539)
T KOG0548|consen 380 HYTEAIKRDPEDA--RLYSNRAACYLKLGEYPEALKDAKKCIELDPN--------------------------FIKAYLR 431 (539)
T ss_pred HHHHHHhcCCchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch--------------------------HHHHHHH
Confidence 9999999999888 78899999999999999999998888877664 6888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
.|.++..+.+|++|++.|+++++.+|++..+. .+..|...+.......+..+++.
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence 99999999999999999999999999997776 77888776544444445555533
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=104.53 Aligned_cols=189 Identities=16% Similarity=0.130 Sum_probs=133.8
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-------------------HHHHHHHHHHHHcCCHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD-------------------SALKDMAVVLKQQDRVD 70 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------~~~~~la~~~~~~g~~~ 70 (287)
..+...|+....|+.+|.++...+++.++.-. .++...+... .+++.+|.||-.+|+.+
T Consensus 56 ~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ 133 (906)
T PRK14720 56 EHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK 133 (906)
T ss_pred HHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH
Confidence 35667788888888888888887777776655 5555444443 78888888888888889
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC---
Q 023081 71 EAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE--- 147 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 147 (287)
+|...++++++.+|+++ .+.+.+|..|... +.++|+.++.+++...-+ .+.+..+.+...+ -+..+|+
T Consensus 134 ka~~~yer~L~~D~~n~--~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~-----~kq~~~~~e~W~k-~~~~~~~d~d 204 (906)
T PRK14720 134 KLKGVWERLVKADRDNP--EIVKKLATSYEEE-DKEKAITYLKKAIYRFIK-----KKQYVGIEEIWSK-LVHYNSDDFD 204 (906)
T ss_pred HHHHHHHHHHhcCcccH--HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh-----hhcchHHHHHHHH-HHhcCcccch
Confidence 99999999988888887 7888888888888 888888888888876431 1112222222222 1222222
Q ss_pred -----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 148 -----------------TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 148 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
-...+.-+=..|...++|++++.+++.+++.+|.+..+. .++.||. +.|.. ...++..+
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 233444455788888999999999999999999986664 8888887 44544 66666666
Q ss_pred hcc
Q 023081 210 LGK 212 (287)
Q Consensus 210 ~~~ 212 (287)
+..
T Consensus 282 ~~s 284 (906)
T PRK14720 282 KMS 284 (906)
T ss_pred HHh
Confidence 653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-09 Score=87.05 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=151.6
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----------------
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC---------------- 83 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------- 83 (287)
......+++...+|+++.|..-..++++..|.++.+......+|...|++.+...++.+..+..
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 4556677888889999999999999999999999999999999999999988888776654321
Q ss_pred --------hhh------hH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--c----CCChhHH
Q 023081 84 --------SKQ------AQ----------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--N----GKPTKTA 133 (287)
Q Consensus 84 --------p~~------~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~----~~~~~~a 133 (287)
++. -| ..+...++.-+..+|+.++|.+....+++...+.... . ......-
T Consensus 234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l 313 (400)
T COG3071 234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPL 313 (400)
T ss_pred HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHH
Confidence 000 00 1344556777788899999999999999976554432 1 1222233
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
....++ .+...|+++..+..+|.++.+.+.|.+|..+|+.+++..|+......+|.++.++|+..+|.+.+++++...
T Consensus 314 ~k~~e~-~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 314 IKAAEK-WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHH-HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 333333 577889999999999999999999999999999999999988888899999999999999999999999553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-11 Score=100.88 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=113.2
Q ss_pred hhcCCCCchHH--HHhHHhHHhhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 023081 12 VHKLPPGDSPY--VRAKHVQLVEKD---PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD--------RVDEAVEAIKS 78 (287)
Q Consensus 12 l~~~p~~~~~~--~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 78 (287)
....|.+.++| +..|..+...++ ...|+.+|+++++.+|+++.++..++.++.... +...+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34456666665 566777765544 789999999999999999999998888775542 23455555666
Q ss_pred HHHh--chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 79 FRHL--CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 79 ~~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++.. .|..+ .++..+|..+...|++++|...+++++.++| +..++..+|
T Consensus 410 a~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p---------------------------s~~a~~~lG 460 (517)
T PRK10153 410 IVALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDLEM---------------------------SWLNYVLLG 460 (517)
T ss_pred hhhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------CHHHHHHHH
Confidence 5554 44444 5777788888888999999999999888876 577889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.++...|++++|.+.|++|+.++|.++..
T Consensus 461 ~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 461 KVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999999998764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-10 Score=95.58 Aligned_cols=202 Identities=14% Similarity=0.061 Sum_probs=132.7
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.+++..|++++.....|......|+-++|..+.+.++..++.....|.-+|.++....+|++|+.+|+.++...|+|.
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~-- 109 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL-- 109 (700)
T ss_pred HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--
Confidence 356677777787777777777778888888887777777777777777788888777888888888888888777776
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc---------CCChhHHHHHHHHHhhhc--CCC-----cHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------GKPTKTARSHGKKFQVTV--KQE-----TSRILG 153 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~--~~~-----~~~~~~ 153 (287)
.++..++.+..++++++.....-.+.++..|...+++ ......+...++.+.-.. .|. ......
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 6777777777777777777777777777776433321 112233333333331111 122 233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
....++.+.|.+++|++.+..--..--+..... ..+.++.++++.++|...|...+..++
T Consensus 190 y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 190 YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 555666677777777666544211111111111 578888999999999999999998743
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-09 Score=98.75 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=80.2
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGD-RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVLI 96 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l~ 96 (287)
..|..+-..+...|+.+.|...|+++.+.+. -+...|..+...|.+.|++++|+..|.++... .|+. ..++.+.
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~---vTYnsLI 549 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR---VVFNALI 549 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence 3344444444444555555555544444321 12344444555555555555555555444332 2222 2444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHh----ccchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 97 DLYKKCGRLDEQIELLKQKLR----MIYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~----~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
..|.+.|++++|.++|..+.. +.|+...| .....+.|...++.+.-..-+.++.+|..+...|.+.|+
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 455555555555555554433 12222111 112233344444432111112234445555555555555
Q ss_pred HHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 165 YTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 165 ~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
+++|...|+++... .|+...+..+...+.+.|+.++|.++++.+.+
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55555555554443 22211112344444555555555555554444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=86.88 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=38.4
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|++. ..+..+|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP--SALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHH
Confidence 334444444444455555555555444443321 23444444444445555555555554444444433 3333444
Q ss_pred HHHHHcCCH
Q 023081 97 DLYKKCGRL 105 (287)
Q Consensus 97 ~~~~~~g~~ 105 (287)
.++...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-09 Score=92.40 Aligned_cols=193 Identities=16% Similarity=0.089 Sum_probs=146.2
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
..+..++...++...|++++|++++++....-.+...+.-..|.++..+|++++|...|...+..+|++. ..+..+..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~--~Yy~~L~~ 80 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY--DYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHH
Confidence 4567788889999999999999999998888888889999999999999999999999999999999886 55665655
Q ss_pred HHHHc-----CCHHHHHHHHHHHHhccchhhh-------------hc-------------CCC---------------hh
Q 023081 98 LYKKC-----GRLDEQIELLKQKLRMIYHGEA-------------FN-------------GKP---------------TK 131 (287)
Q Consensus 98 ~~~~~-----g~~~~A~~~~~~al~~~~~~~~-------------~~-------------~~~---------------~~ 131 (287)
+..-. .+.+.-...|++....+|.+.+ |. |.. ..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 54222 2456667778877776652111 10 100 01
Q ss_pred HHHHHHHHHh--hh------------cCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 132 TARSHGKKFQ--VT------------VKQETS--RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 132 ~a~~~~~~~~--~~------------~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
.....+..+. +. ..|... .+++.++..|...|++++|+.+.++++...|..+..+ ..|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1112222211 10 112222 3558889999999999999999999999999998887 89999999
Q ss_pred ccCHHHHHHHHHHHHhcc
Q 023081 195 QARYTEARSVLEDVLLGK 212 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~~ 212 (287)
.|++.+|...++.+-...
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD 258 (517)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 999999999999999874
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=99.06 Aligned_cols=185 Identities=17% Similarity=0.110 Sum_probs=155.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.....-..++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++..| ++ ..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~--~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-DP--RLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cc--hhHHHh
Confidence 445566678899999999999999999764 6788889999999999999999999999444 45 688889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccc--hhh-hhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIY--HGE-AFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~--~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
|++.....-|++|.++.+..-.... .+. .+....+..+..+++. .+.++|-...+|+.+|.+..+.+++..|.++|
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~-sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLER-SLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHH-HhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8887777778888887776554421 111 1234567778888887 89999999999999999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++.++|++...| |++.+|...|+..+|...+.++++.+
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999998 89999999999999999999999875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.6e-11 Score=91.27 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=103.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD---RVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~ 85 (287)
...+..+|++.+.|..||.+|+..|+++.|...|.+++++.|++++.+..+|.++.... ...++...+++++..+|.
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~ 225 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA 225 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc
Confidence 34677899999999999999999999999999999999999999999999999987764 367999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+. .....++..++.+|+|.+|+..++.+++..|.
T Consensus 226 ~i--ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 226 NI--RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cH--HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 98 88999999999999999999999999999874
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=76.97 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=47.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhch
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p 84 (287)
++..|..+|.++...|++++|+..|.++++.+|+++.+++++|.++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566777777777777777777777777777777777777777777777 57777777777777665
|
... |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=96.69 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=143.8
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|....+++..+.-.+..++|.+.+...+..++..|.+++.+...|..+...|+.++|......++..++... ..|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~--vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH--VCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc--hhHHHH
Confidence 445567777777888899999999999999999999999999999999999999999999999999988876 689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|.++...++|++|+++|+.|+.+.|+ +..+|..++.+..++++++.....-.+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d--------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD--------------------------NLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC--------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999998888765 6777777777777888888777777777
Q ss_pred HhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 176 QLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++..|.....| ..+.++...|++..|...++...+..
T Consensus 136 Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777776666 67777777788887777777666553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-10 Score=80.79 Aligned_cols=129 Identities=20% Similarity=0.142 Sum_probs=104.6
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLI 96 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~ 96 (287)
..|.........++...+...++..+...|+. ..+.+.+|.++...|++++|...|+.++...|+..+ ..+...++
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444555557899999999999999999888 567888999999999999999999999998765432 23577789
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
.++...|++++|+..++..-.. +-.+.++..+|.++...|++++|...|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652111 1146678889999999999999999999875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=85.12 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=86.8
Q ss_pred HhhcCCCC--chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 11 VVHKLPPG--DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 11 ~l~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
++...+.+ ...++.+|..+...|++++|+..|++++...|+. +.++.++|.++...|++++|+..+++++...|.
T Consensus 25 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 25 ILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 33444544 5677999999999999999999999999887653 458999999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHhcc
Q 023081 86 QAQESLDNVLIDLYK-------KCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~al~~~ 119 (287)
.. ..+..++.++. ..|++++|+..+.+++...
T Consensus 105 ~~--~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 105 LP--QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred cH--HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence 65 45555566665 8889888887777776553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-11 Score=78.07 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=91.7
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.++.+|..+...|++++|+..++++++..|....++..+|.++...|++++|+..+++++...|.+. ..+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHH
Confidence 5788999999999999999999999999999989999999999999999999999999999999876 68889999999
Q ss_pred HcCCHHHHHHHHHHHHhccc
Q 023081 101 KCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~ 120 (287)
..|++++|...+.++++..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999988765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=80.45 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=92.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNV 94 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~ 94 (287)
++.++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+..|++++...|++. ...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999988876 57899999999999999999999999999988753 1257888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+|.++...|++++|...++++++..|.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999885
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-11 Score=93.86 Aligned_cols=186 Identities=17% Similarity=0.136 Sum_probs=115.8
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD--RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
...+...++..+...++-+.++..++..+.... .++......|.++...|++++|+..+.+. .+. +.....
T Consensus 65 ~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l--E~~al~ 137 (290)
T PF04733_consen 65 ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSL--ELLALA 137 (290)
T ss_dssp CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH--HHHHHH
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc--cHHHHH
Confidence 344444455544444455566665554443221 22334455556666677777777766553 122 344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhh------hh----c-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGE------AF----N-GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~----~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
..+|...++++.|.+.++.+.+.+.+.. +| . +..++.+.-.++.+ ....+.++.+++.++.++..+|+
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El-~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL-SDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH-HCCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHhCC
Confidence 6677777777777777777766655322 22 1 22455566655542 23335688999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH-HHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY-TEARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~-~~A~~~~~~~l~~ 211 (287)
|++|...+++++..+|.++... |++.+...+|+. +.+.+++.+....
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999998886 999999999998 4455566665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-10 Score=86.16 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=141.8
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
....+|.+||+++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|... ......++.+.+.+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~--qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE--QYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH--HHHHHHHHHHHHhcccHHHH
Confidence 5677899999999999999999989999999999999999999999999999999877 45556678888999999999
Q ss_pred HHHHHHHhccch---------hhhhcCCChhHHHHHHHHHhhhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 110 ELLKQKLRMIYH---------GEAFNGKPTKTARSHGKKFQVTVKQ--ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 110 ~~~~~al~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
............ ...|....+..+...++ ..| +++.+..+.|.+.++.|+++.|++-|+.+++.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve-----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE-----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH-----hccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 887766553211 11111222222333322 234 57888999999999999999999999999998
Q ss_pred CCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..-.+.. ++++.++...|++..|+++..+.++..
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 7766544 799999999999999999999888776
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-10 Score=99.61 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=113.0
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh------
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA------ 87 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------ 87 (287)
-.|++..++..+...+...+++++|+..++.++...|+...+++.+|.++.+.++++++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 46888999999999999999999999999999999999999999999999999998887766 5555544221
Q ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 88 -----------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 88 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
...++..+|.+|-+.|++++|...|+++++.+|. ++.+++++|
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--------------------------n~~aLNn~A 157 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--------------------------NPEIVKKLA 157 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--------------------------cHHHHHHHH
Confidence 0136777888999999999999999988877654 788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~ 178 (287)
..|... ++++|++++.+|+..
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH
Confidence 888888 888888888888764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.5e-10 Score=99.99 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=122.9
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNV 94 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 94 (287)
.+...+..+...|...|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|++.... .|+. ..+..
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~---~t~~~ 330 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ---FTFSI 330 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHH
Confidence 355666677777888888888888887652 345577888888888888888888888877653 3443 35666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccc--h-------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIY--H-------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~--~-------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
+...+.+.|++++|.+.+..+++... + ...| .....+.|...++.. ...+..+|+.+...|.+.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m----~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC----CCCCeeeHHHHHHHHHHcCC
Confidence 77777777888888877777776542 1 1112 123455555555532 11255677777778888888
Q ss_pred HHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.++|++.|+++... .|+......+..++...|..++|..+|+...+.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 88888888877653 344333346667777777777777777777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=78.78 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
..++.+|..+...|++++|+..|.+++..+|++.. ......+|.++...|++++|+..|+.++...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----------- 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----------- 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-----------
Confidence 56777888888888888888888888887775421 145667788888888888888888887776552
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.+..+.++..+|.++...|++++|+..+++++...|++...
T Consensus 72 ------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 72 ------------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred ------------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 11135667778888888888888888888888887776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-11 Score=76.97 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=70.2
Q ss_pred hCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
+|+++.|+..|++++...|. +...++.+|.++++.|++++|+.++++ ...+|.+. .....+|.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~--~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP--DIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH--HHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999999985 456788899999999999999999999 77777665 56777899999999999999
Q ss_pred HHHHHH
Q 023081 110 ELLKQK 115 (287)
Q Consensus 110 ~~~~~a 115 (287)
+.|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=73.20 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=56.6
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999988763
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=96.88 Aligned_cols=129 Identities=19% Similarity=0.091 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
.|...+..+...++.++|.-++.++-.++|-.+ ..++..|.++...|.+++|.+.|..++.++|+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~--~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------------- 716 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSA--SVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------------- 716 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH--HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-------------
Confidence 344455555555555555555555555555444 44555555555555555555555555555443
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV--VYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++.+...+|.++.+.|+..-|.. .+..+++.+|.++.+| .+|.++..+|+.++|..+|..+++.
T Consensus 717 -------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 717 -------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred -------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 44455555555555555544444 5555555555555554 4555555555555555555555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-09 Score=82.06 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
.+..++..|..+...|++.+|+..|++++...|... ...+...+|.++...|++++|+..+++.++..|..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------- 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------- 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 467899999999999999999999999999999653 22568889999999999999999999999998841
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCchH---------------
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-----------NYTSAEVVYRKAQLIDPDANK--------------- 184 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~--------------- 184 (287)
|.-+.+++.+|.++.... ...+|+..|+..+...|+.+-
T Consensus 76 ---------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 76 ---------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred ---------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 234667788888766543 346899999999999998641
Q ss_pred ---HHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 185 ---ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 185 ---~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
-+.+|..|.+.|.+..|+..++.+++.++.............+....++
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 0157899999999999999999999986444333344444444444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=72.74 Aligned_cols=67 Identities=24% Similarity=0.198 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccc
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG-RLDEQIELLKQKLRMIY 120 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~ 120 (287)
++.+|..+|.++...|++++|+..|.++++.+|+++ .++..+|.+|..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~--~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA--EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 468899999999999999999999999999999988 89999999999999 79999999999999876
|
... |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-09 Score=100.00 Aligned_cols=185 Identities=10% Similarity=0.016 Sum_probs=146.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVL 95 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l 95 (287)
+...+..+-..|...|+.++|...|... +.+..+|..+...|...|+.++|++.|++..+. .|+.. .+..+
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~~~l 595 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV---TFISL 595 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc---cHHHH
Confidence 3444455667788899999999999775 455688999999999999999999999988764 45543 56666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc---cchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRM---IYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
...+.+.|.+++|..+|+.+.+. .|+...| .....++|...++. ....| ++.+|..+-..+...|+
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~--m~~~p-d~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK--MPITP-DPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH--CCCCC-CHHHHHHHHHHHHHcCC
Confidence 77788899999999999998843 3433332 23457778877775 34455 46778888888899999
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+.+....++++++.|++...+ .|+.+|...|++++|.+..+...+..
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 9999999999999999998776 78999999999999999999888765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-10 Score=99.96 Aligned_cols=188 Identities=13% Similarity=0.023 Sum_probs=155.7
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDN 93 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~ 93 (287)
+.+...+..+...|...|++++|...|++..+ | +..+|..+...|.+.|+.++|++.|+++.+. .|+. ..+.
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~---~T~~ 430 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH---VTFL 430 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH---HHHH
Confidence 56778888999999999999999999988754 3 4478999999999999999999999998765 4554 4678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---cchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRM---IYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
.+...+...|..++|.++|+.+.+. .|....| .....++|.+.++. ....| +..+|..+...+...
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--~~~~p-~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--APFKP-TVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH--CCCCC-CHHHHHHHHHHHHHc
Confidence 8888999999999999999999863 3433222 23356777777664 23334 567799999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+++.|...+++.+...|++...+ .|+.+|...|++++|.+.++...+..
T Consensus 508 g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999886665 79999999999999999999988765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.1e-10 Score=81.86 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=91.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRV--DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A 108 (287)
..++..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+.. ...++..+|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344666666665555555444 66789999999999999999999999998876532 124788999999999999999
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHH
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM-------QKGNYT-------SAEVVYRK 174 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~ 174 (287)
+..+++++.+.|. ....+.++|.++. ..|+++ +|+.+|++
T Consensus 92 ~~~~~~Al~~~~~--------------------------~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 92 LEYYFQALERNPF--------------------------LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHhCcC--------------------------cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 9999999888663 4455566666666 777776 44444455
Q ss_pred HHhhCCCc
Q 023081 175 AQLIDPDA 182 (287)
Q Consensus 175 al~~~~~~ 182 (287)
++..+|.+
T Consensus 146 a~~~~p~~ 153 (168)
T CHL00033 146 AIALAPGN 153 (168)
T ss_pred HHHhCccc
Confidence 55566654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-10 Score=98.04 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=147.6
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhchhh
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ-----QDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+..|+-...+-...........+.++.-++.+++...-+.....+..+..++. ..+...|+..|-++++++|..
T Consensus 412 ~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~ 491 (1238)
T KOG1127|consen 412 ANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSL 491 (1238)
T ss_pred HhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccch
Confidence 445566666666666666666667777777776666665554444444433322 245889999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhhc-CCChhHHHHHHHHHhhhcCCC--cHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAFN-GKPTKTARSHGKKFQVTVKQE--TSRILGNL 155 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~-~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 155 (287)
+ ..+..+|.+|...-+...|..+|+++.++++.. ..|. ...++.+....-. .-+..|. -...|..+
T Consensus 492 a--paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~-~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 492 A--PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR-AAQKAPAFACKENWVQR 568 (1238)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH-HhhhchHHHHHhhhhhc
Confidence 7 789999999999999999999999999999831 2221 2233444333222 2222222 24457779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|..|.+.+++.+|+..|+.++..+|.+...| .+|.+|...|++..|++.|.++....
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 9999999999999999999999999998888 89999999999999999999999873
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=74.65 Aligned_cols=98 Identities=29% Similarity=0.355 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
+++.+|.++...|++++|+..++++++..|.+. .++..+|.++...|++++|++.+++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPD------------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------------
Confidence 355666666666777777777777666666554 45566666666666666666666666555442
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
+..++..+|.++...|++++|...+.+++...|
T Consensus 67 -------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 67 -------------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------------chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 345566666666666666666666666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-09 Score=80.88 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
..+..++..|..+...|++++|+..|++++...|...+. .....+|.+|.+.+++++|+..+++.++..|.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-------- 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-------- 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--------
Confidence 356778899999999999999999999999999976422 34678999999999999999999999999884
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCchH-------
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG---------------N---YTSAEVVYRKAQLIDPDANK------- 184 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~------- 184 (287)
+|+.+.+++.+|.++...+ + ..+|+..|++.+...|+..-
T Consensus 102 ---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 102 ---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred ---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 3446788888998865543 1 25788999999999998641
Q ss_pred -----------HHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 185 -----------ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 185 -----------~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
-+.+|..|.+.|.+..|+.-++.+++.++..+.....+....+....++..
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 015788899999999999999999998766655555555555555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=84.94 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC
Q 023081 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 68 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
..+.-+.-++.-+..+|+++ +-|..+|.+|...|++..|...|.+++++.|+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-------------------------- 188 (287)
T COG4235 137 EMEALIARLETHLQQNPGDA--EGWDLLGRAYMALGRASDALLAYRNALRLAGD-------------------------- 188 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--------------------------
Confidence 34555556666667777766 66777777777777777777777777777654
Q ss_pred cHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 148 TSRILGNLGWAYMQKG---NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
++..+..+|.++.... .-.++...+++++..+|.+.... .||..++..|++.+|...++..++..+.+.+..
T Consensus 189 n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 189 NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 5666666666655443 34567777777777777776664 677777777777777777777777654444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-09 Score=87.43 Aligned_cols=215 Identities=17% Similarity=0.152 Sum_probs=141.8
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++...|++.++...--.+....+.|++|+...+.-....... ...+..|.|.++.+..++|+..++ ..++.+.
T Consensus 37 Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~-- 110 (652)
T KOG2376|consen 37 KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD-- 110 (652)
T ss_pred HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccch--
Confidence 4566678888888887777888888888885443322211111 222678888899999999988888 2233333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhhcCCChhH--HHHHH--HHHhhhcCCC-cHHHHHHHHHHHHHcC
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAFNGKPTKT--ARSHG--KKFQVTVKQE-TSRILGNLGWAYMQKG 163 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~--a~~~~--~~~~~~~~~~-~~~~~~~lg~~~~~~g 163 (287)
.+....++++++.|+|++|.+.|+..++..... +.-.....-. +.... .. .+...|. +.+.+++.+.++...|
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q-~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ-SVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH-hccCCCcchHHHHHHHHHHHHhcc
Confidence 477778999999999999999999988765421 1110000000 00111 11 3344454 6778999999999999
Q ss_pred CHHHHHHHHHHHHhh--------CCCch------HH--HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q 023081 164 NYTSAEVVYRKAQLI--------DPDAN------KA--CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKE 227 (287)
Q Consensus 164 ~~~~A~~~~~~al~~--------~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (287)
+|.+|++.+++++.+ +.+.. .. ..|+.++..+|+..+|...|...++..+ .+.....-+..
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~---~D~~~~Av~~N 266 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP---ADEPSLAVAVN 266 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC---CCchHHHHHhc
Confidence 999999999999442 11111 11 1789999999999999999999998743 33333344445
Q ss_pred HHHhccc
Q 023081 228 LLQELEP 234 (287)
Q Consensus 228 ~l~~l~~ 234 (287)
.|-.+..
T Consensus 267 NLva~~~ 273 (652)
T KOG2376|consen 267 NLVALSK 273 (652)
T ss_pred chhhhcc
Confidence 5544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-09 Score=84.15 Aligned_cols=173 Identities=19% Similarity=0.222 Sum_probs=128.7
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD--R----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQ 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~ 88 (287)
.+.|...|..|...+++++|...|.++..... + ....+...+.+|... ++++|+.++++++.+.-.. ..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46678899999999999999999999975431 1 145566777777666 9999999999999874321 22
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 89 ESLDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 89 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
......+|.+|... |++++|+++|+++++..... ........++..+|.++...|+|++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--------------------~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--------------------GSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--------------------CChhhHHHHHHHHHHHHHHhCCHHH
Confidence 35788899999999 99999999999999986420 0000025567789999999999999
Q ss_pred HHHHHHHHHhhCCCch-------HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDAN-------KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~-------~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|++.|++.....-+.+ ..+ ..+.|+...|+...|...+++.....
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999887543321 122 56788899999999999999998774
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-09 Score=76.14 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
...+..|.-++.+|++++|...|+-..-.++. ++..|+.||.++..+++|++|+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--------------------------n~~Y~~GLaa~~Q~~k~y~~Ai 91 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY--------------------------NPDYTMGLAAVCQLKKQFQKAC 91 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999876665543 7888999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
..|..+..++++++... +.|.|+..+|+...|...|..++.. +.+.....++...|..+...
T Consensus 92 ~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 92 DLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER----TEDESLRAKALVYLEALKTA 154 (165)
T ss_pred HHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHcc
Confidence 99999999999987774 9999999999999999999999974 45666677888888877654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-08 Score=73.95 Aligned_cols=168 Identities=15% Similarity=0.065 Sum_probs=138.3
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHHcCC
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-CSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
+......=|++...+-..+.+...|.. .-.+.||..+...|++.+|...|++++.- ..+++ .+...+++..+..++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~--a~lLglA~Aqfa~~~ 139 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA--AMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH--HHHHHHHHHHHhhcc
Confidence 344455567777777777888888876 77889999999999999999999999763 33445 577788889999999
Q ss_pred HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Q 023081 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 105 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 184 (287)
+..|...+++..+..|... ++.....+|.++...|++.+|...|+.++...|+...
T Consensus 140 ~A~a~~tLe~l~e~~pa~r------------------------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFR------------------------SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HHHHHHHHHHHhhcCCccC------------------------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 9999999999988877422 5777888999999999999999999999999999888
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchh
Q 023081 185 ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETK 220 (287)
Q Consensus 185 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 220 (287)
....+..+.++|+.++|..-+..+.+....+..++.
T Consensus 196 r~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 196 RIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 888999999999999998888777766544555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-09 Score=85.69 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=133.6
Q ss_pred cCCCCc---hHH----HHhHHhHHhhC---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CCHHH
Q 023081 14 KLPPGD---SPY----VRAKHVQLVEK---DPEAAIVLFWKAI---NAGDRVDSALKDMAVVLKQQ---------DRVDE 71 (287)
Q Consensus 14 ~~p~~~---~~~----~~lg~~~~~~~---~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~---------g~~~~ 71 (287)
..|.+. ++| +..|...+..+ ....|+.+|.+++ ..+|+.+.++..+|.|++.. ....+
T Consensus 243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~ 322 (458)
T PRK11906 243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK 322 (458)
T ss_pred CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 335555 444 77777776654 4567899999999 99999999999999998765 24678
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 72 AVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 72 A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
|....+++++++|.++ .+...+|.+....++++.|...|++++.++|+ .+.+
T Consensus 323 a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn--------------------------~A~~ 374 (458)
T PRK11906 323 ALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTD--------------------------IASL 374 (458)
T ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc--------------------------cHHH
Confidence 8999999999999998 67778888888889999999999998777664 8999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH--HHHH-HHHhccCHHHHHHHHHHH
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC--NLSH-CLIKQARYTEARSVLEDV 208 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~l~~-~~~~~g~~~~A~~~~~~~ 208 (287)
|+..|++....|+.++|.+.++++++++|....+. .+-. .|. ....++|+..|-+-
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 99999999999999999999999999999875543 3333 343 44567788777543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=90.60 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=134.2
Q ss_pred CchHHHHhHHhHHhhCC--------------------HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHH
Q 023081 18 GDSPYVRAKHVQLVEKD--------------------PEAAIVLFWKAINAGDR------VDSALKDMAVVLKQQDRVDE 71 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~ 71 (287)
...++|++|.+|..+|. ++.|.++|+.-+++... ...++-+||..|+-+|+|+.
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 46789999999988765 45566777666554322 23567789999999999999
Q ss_pred HHHHHHHHHHhchhh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC
Q 023081 72 AVEAIKSFRHLCSKQ----AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 72 A~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
|+..-+.-+.+.... +.-.++..+|+++...|+++.|++.|...+.+ ++++...
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L----------------------Aielg~r 271 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL----------------------AIELGNR 271 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH----------------------HHHhcch
Confidence 999988877764422 23357888999999999999999999998877 3333222
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-------HHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 148 --TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-------KACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 148 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+...+.+|+.|.-..++++|+.++.+-+.+...-. ..|.||.++-.+|..++|+.+.+..++..
T Consensus 272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999887654321 23589999999999999999998888765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-08 Score=81.38 Aligned_cols=206 Identities=13% Similarity=0.066 Sum_probs=168.9
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHH-HHHHcCCHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---------DSALKDMAV-VLKQQDRVDEAVEA 75 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~-~~~~~g~~~~A~~~ 75 (287)
-+..+.+..+|.+.++|+..-+.....|+.+.-.+.|++|+..-|-. ...|.+.+. .-....+.+.+.++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35567899999999999998888888999999999999999877653 222333332 12456899999999
Q ss_pred HHHHHHhchhh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC--------ChhHHHHHHHHHhhhcC
Q 023081 76 IKSFRHLCSKQ--AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK--------PTKTARSHGKKFQVTVK 145 (287)
Q Consensus 76 ~~~~~~~~p~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~~ 145 (287)
|+.++++-|.. ....+|...+..-.++.+...|.+.+-.++...|....+.+. ..+.....+++| +...
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf-le~~ 467 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF-LEFS 467 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH-HhcC
Confidence 99999999843 344789999999999999999999999999999977666443 356667777774 8899
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHH-H-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-NKA-C-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|.+..+|...|.+-..+|+.+.|...|.-|++...-+ +.. | .....-...|.++.|..+|++.++..
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999876544 555 4 56667788999999999999999875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-10 Score=72.43 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=68.6
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV 144 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 144 (287)
..|+++.|+.+++++++..|.+.....+..+|.+|+..|+|++|+..+++ .+..+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~----------------------- 56 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS----------------------- 56 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-----------------------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-----------------------
Confidence 36899999999999999999532225677799999999999999999998 555442
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 145 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
++...+.+|.++..+|++++|+..|+++
T Consensus 57 ---~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 57 ---NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ---HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 5677778899999999999999999875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.6e-09 Score=74.63 Aligned_cols=121 Identities=19% Similarity=0.131 Sum_probs=96.9
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT 143 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~ 143 (287)
..++...+...++..+..+|+.++. .....++.++...|++++|...|+.++...++..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-------------------- 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-------------------- 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------------
Confidence 5788999989999999999977322 4577799999999999999999999998754200
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
-.+.+.+.+|.++...|++++|+..++.. ...+-.+..+ .+|.++...|++++|+..|++++
T Consensus 83 ---l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 ---LKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 02557888999999999999999999763 2222223444 79999999999999999999875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=84.31 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=91.6
Q ss_pred chHHHHhHHhH-HhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHH
Q 023081 19 DSPYVRAKHVQ-LVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDN 93 (287)
Q Consensus 19 ~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~ 93 (287)
....|..|..+ +..|+|++|+..|+..+...|+. +.+++.+|.+|+..|++++|+..|++++...|+++ ...++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888776 55799999999999999999987 57999999999999999999999999999999753 225788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+|.++...|++++|...|+++++.+|.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999999985
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-10 Score=68.32 Aligned_cols=64 Identities=28% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
.+|..+...|++++|+..|+++++..|. ++.+++.+|.++..+|++++|+.+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD--------------------------NPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT--------------------------HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566666777777777777776665543 56677777777777777777777777
Q ss_pred HHHhhCCCch
Q 023081 174 KAQLIDPDAN 183 (287)
Q Consensus 174 ~al~~~~~~~ 183 (287)
++++.+|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 7777777653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=76.07 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
...+++.+|..+...|++++|+.+|+++++..|+.. ...++..+|.++...|++++|+..+++++...|.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------- 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--------- 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------
Confidence 355567777777777777777777777776655422 1146667777777777777777777776655443
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
++..+..+|.++...|+...+...+..
T Consensus 105 -----------------~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 105 -----------------QPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred -----------------cHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 566667777777777665554444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-09 Score=82.52 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=60.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 54 SALKDMAVVL-KQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 54 ~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
...+..|..+ ...|++++|+..|+..+..+|+..+ ..+++.+|.+|...|++++|+..|+++++.+|.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------
Confidence 3444555544 3456666666666666666665421 135556666666666666666666666655542
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
+|..+.+++.+|.++...|++++|...|+++++..|+..
T Consensus 213 -------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 213 -------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred -------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 122455566666666666666666666666666655543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.3e-09 Score=70.83 Aligned_cols=97 Identities=25% Similarity=0.229 Sum_probs=84.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh---hhHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK---QAQESLD 92 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 92 (287)
+.+.|.+|..+-..|+.++|+.+|++++...... ..++..+|.++...|++++|+..+++.+...|+ +. .+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHH
Confidence 3578999999999999999999999999976443 578999999999999999999999999999887 34 456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
..++.++...|++++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6678899999999999999887764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-08 Score=89.64 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHH
Q 023081 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTIN 223 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 223 (287)
+.+..+|+.+...|...|+.++|+..|+++.+. .|+......+..++.+.|..++|..+|+...+... ...+...|.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-i~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-CCCchHHHH
Confidence 445667777778888888888888888877663 34444444566677778888888888887774421 223445666
Q ss_pred HHHHHHHhcccc
Q 023081 224 RVKELLQELEPW 235 (287)
Q Consensus 224 ~~~~~l~~l~~~ 235 (287)
-....+.+.+..
T Consensus 630 ~lv~~l~r~G~~ 641 (857)
T PLN03077 630 CVVDLLGRAGKL 641 (857)
T ss_pred HHHHHHHhCCCH
Confidence 677777776664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=76.76 Aligned_cols=102 Identities=6% Similarity=-0.176 Sum_probs=94.5
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.++.-+..|..|.-++..|++++|...|+-....+|.++..+..||.++...++|++|+..|..+..+.++++ ...+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--Cccch
Confidence 4445677889999999999999999999999999999999999999999999999999999999999999888 67888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.|.+|...|+.+.|..+|+.++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999985
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.8e-08 Score=82.11 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=136.5
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhchhhhH-
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-----RVDEAVEAIKSFRHLCSKQAQ- 88 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~- 88 (287)
-++.....-..|.++...|++++|...|+..|..+|++...+..+..+..... +.+.-...|++.....|....
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~ 113 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP 113 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch
Confidence 45666778889999999999999999999999999999888888888873333 456667777777666553210
Q ss_pred -----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------cchhh
Q 023081 89 -----------------------------ESLDNVLIDLYKKCGRLDEQIELLKQKLRM----------------IYHGE 123 (287)
Q Consensus 89 -----------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~ 123 (287)
..+...+-.+|.......-...++...... .|...
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 011222222222111111111122221111 01110
Q ss_pred hh----------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 124 AF----------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 124 ~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
.| .-..+..|..++++ ++...|..++.++..|.++-..|++.+|..+++.+-.+++.+--.. ..+..+
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~-aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDK-AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 11 12246677777777 7888888999999999999999999999999999999999887665 678888
Q ss_pred HhccCHHHHHHHHHHHHhc
Q 023081 193 IKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 193 ~~~g~~~~A~~~~~~~l~~ 211 (287)
.+.|++++|...+......
T Consensus 273 LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHCCCHHHHHHHHHhhcCC
Confidence 9999999999998877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-07 Score=71.93 Aligned_cols=213 Identities=13% Similarity=0.131 Sum_probs=152.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
+...-.|...+......||++.|=.++.++-+..++ ...+....+......|+++.|.....++++..|.++ .+...
T Consensus 115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--~vlrL 192 (400)
T COG3071 115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--EVLRL 192 (400)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--HHHHH
Confidence 334456677778888999999999999999887433 356777888999999999999999999999999888 78888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchh---------hhhcCC-----ChhHH---HHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHG---------EAFNGK-----PTKTA---RSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~-----~~~~a---~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
...+|...|+|.+....+.+.-+..-.+ .++.+- ....+ ..+.+. ....-.+++.+-..++.
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~-~pr~lr~~p~l~~~~a~ 271 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN-QPRKLRNDPELVVAYAE 271 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh-ccHHhhcChhHHHHHHH
Confidence 8999999999999999888777643211 111110 00011 112221 11112235777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHh-------------------------------hCCCchHHH-HHHHHHHhccCHHHHHHHH
Q 023081 158 AYMQKGNYTSAEVVYRKAQL-------------------------------IDPDANKAC-NLSHCLIKQARYTEARSVL 205 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~-------------------------------~~~~~~~~~-~l~~~~~~~g~~~~A~~~~ 205 (287)
-+...|+.++|.+..+++++ ..|+++..+ .||..+.+.+.+.+|..+|
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888888888877765 345555555 7999999999999999999
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 206 EDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
+.+++..+ ....+......+..++..
T Consensus 352 eaAl~~~~----s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 352 EAALKLRP----SASDYAELADALDQLGEP 377 (400)
T ss_pred HHHHhcCC----ChhhHHHHHHHHHHcCCh
Confidence 99998742 222235556666666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-08 Score=80.70 Aligned_cols=207 Identities=15% Similarity=0.104 Sum_probs=175.2
Q ss_pred ccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 3 QTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 3 ~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+.|.++.+.|..+.-+...|+.-|+-...++++..|...|++|+..+..+...|...+.+-++......|...+.+++..
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 45778888899998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC--------CChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG--------KPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
-|.-. .+|+....+-...|+...|.+.|++-++..|...+++. +..+.+.+.+++|.+.. | ....|..
T Consensus 137 lPRVd--qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P-~v~~wik 212 (677)
T KOG1915|consen 137 LPRVD--QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-P-KVSNWIK 212 (677)
T ss_pred cchHH--HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-c-cHHHHHH
Confidence 99654 57777766667789999999999999999998777632 24567888888764333 4 5778899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--H--HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKA--C--NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~--~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
.+..-.+.|...-|...|.+|+..-.++... . ..+..-..+..++.|..+|.-+++.-+
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999876665332 2 456666788899999999999998753
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.2e-09 Score=76.92 Aligned_cols=104 Identities=13% Similarity=-0.008 Sum_probs=69.2
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+|-|+-+.+...|+-++++.++|..+...|+++.|.+.|...++++|..-.++.+.|..++.-|++.-|.+-+.+..+.+
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 35566666777777777777777777777777777777777777777776777777777777777777777777777777
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
|+++.-.+|..+.. ..-++.+|..
T Consensus 164 ~~DPfR~LWLYl~E---~k~dP~~A~t 187 (297)
T COG4785 164 PNDPFRSLWLYLNE---QKLDPKQAKT 187 (297)
T ss_pred CCChHHHHHHHHHH---hhCCHHHHHH
Confidence 76664444443322 2334555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=66.60 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=58.6
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
+..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++ .++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP--EYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH--HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH--HHHHHHhc
Confidence 5689999999999999999999999999999999999999999999999999999876 55555543
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=82.96 Aligned_cols=121 Identities=22% Similarity=0.283 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
.+-..+...++++.|+..+++..+.+|+ ....++.++...++..+|+..+++++...|.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---------------- 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQ---------------- 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----------------
Confidence 3455666778999999999999998876 3445788888899999999999998866553
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
+...+...+..+...++++.|+...++++...|++...| .|+.+|..+|++++|+..++.+-
T Consensus 233 ----------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 ----------DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788899999999999999999999999999999998888 89999999999999998887554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=82.18 Aligned_cols=97 Identities=21% Similarity=0.228 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..+.+++.+|.+.++|.+|+....++|...|. ++.+++..|.++...|+|+.|+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--------------------------N~KALyRrG~A~l~~~e~~~A~ 311 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN--------------------------NVKALYRRGQALLALGEYDLAR 311 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--------------------------chhHHHHHHHHHHhhccHHHHH
Confidence 46778899999999999999999999988765 8899999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHH-HHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYT-EARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~-~A~~~~~~~l~~~ 212 (287)
..|++++++.|++-.+. .|..+-.+..++. ...++|..++...
T Consensus 312 ~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 312 DDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999996664 6777766655544 4478888888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-08 Score=82.71 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=105.3
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD 106 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 106 (287)
.+....+.++.|+..|++..+.+|+ +...++.++...++..+|+..+.+++...|.+. .+....+..+...++++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHH
Confidence 4455678999999999999888874 567799999999999999999999999999887 78889999999999999
Q ss_pred HHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 107 EQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 107 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.|+...+++....|. +...|..|+.+|...|+++.|+..+..+
T Consensus 252 lAL~iAk~av~lsP~--------------------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPS--------------------------EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCch--------------------------hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999998888775 7889999999999999999999887754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=87.50 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=126.7
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch--hh--hHHHHHHHHHH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS--KQ--AQESLDNVLID 97 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~--~~~~~~~~l~~ 97 (287)
|.-....|+....+.+|+.|++...++ ..+|..||.+|+.+++|++|+++-..=+.+.. .+ ......-.+|+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 445677899999999999999888665 45677899999999999999987654433321 11 11134556788
Q ss_pred HHHHcCCHHHHHHHHHHHHhccc--------------hhhhhc--CCC-------------------hhHHHHHHHHHhh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIY--------------HGEAFN--GKP-------------------TKTARSHGKKFQV 142 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~--~~~-------------------~~~a~~~~~~~~~ 142 (287)
++.-.|.|++|+.+..+-+.+.. .+.+|. |+. +..|..++.. .+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e-NL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME-NL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH-HH
Confidence 88888999999988777666432 233342 110 2223333322 22
Q ss_pred hcCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 143 TVKQ--E----TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 143 ~~~~--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
.+.. . ...++-++|+.|+-.|+|++|+..-+.-+.+...+.+ ++ +||.++.-+|+++.|+++|...+
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 2211 1 3456788999999999999999998888876655421 22 89999999999999999998866
Q ss_pred hcc
Q 023081 210 LGK 212 (287)
Q Consensus 210 ~~~ 212 (287)
...
T Consensus 263 ~LA 265 (639)
T KOG1130|consen 263 NLA 265 (639)
T ss_pred HHH
Confidence 543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=80.38 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.+++.++.++++|.+|+....++|..+|++..+. .-|.++..+|+++.|+..|+++++.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555554442 5555555555555555555555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-07 Score=70.05 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=137.8
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~ 93 (287)
.++.+|.-|...+..|++++|++.|+.+....|.. ..+...++.++++.+++++|+..+++.+.+.|.++- .-+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46788999999999999999999999998877654 678899999999999999999999999999997641 12455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 94 VLIDLYKKC--------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 94 ~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
..|.+++.. .-..+|+..|+..+...|+.. ...++..-+..+ +..-..--..+|..|.+.|.+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-----Ya~dA~~~i~~~----~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-----YAPDAKARIVKL----NDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-----chhhHHHHHHHH----HHHHHHHHHHHHHHHHHhcCh
Confidence 566665532 224567778888888888421 111111111111 000123345689999999999
Q ss_pred HHHHHHHHHHHhhCCCchHH---H-HHHHHHHhccCHHHHHHHHHHHHhcccCCCC
Q 023081 166 TSAEVVYRKAQLIDPDANKA---C-NLSHCLIKQARYTEARSVLEDVLLGKLSGST 217 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 217 (287)
..|...++.+++.-|+.... + .+..+|..+|-.++|...- +++..+.+++.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s~ 238 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCCc
Confidence 99999999999987776433 3 7899999999999887654 46665444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=80.77 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=119.3
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhh----h
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--DR----VDSALKDMAVVLKQQ-DRVDEAVEAIKSFRHLCSKQ----A 87 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~----~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~----~ 87 (287)
...+...+.++.. .++++|+.+|++++... .+ -...+..+|.+|... |++++|+++|+++++..... .
T Consensus 75 a~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 75 AKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 3455666666544 49999999999998753 11 256788999999999 99999999999999885422 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
.......++.++...|+|++|++.|++......... .........+...+.+++..|++..
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-------------------l~~~~~~~~~l~a~l~~L~~~D~v~ 214 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-------------------LLKYSAKEYFLKAILCHLAMGDYVA 214 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-------------------TTGHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-------------------ccchhHHHHHHHHHHHHHHcCCHHH
Confidence 235678899999999999999999999887532100 0001123456678889999999999
Q ss_pred HHHHHHHHHhhCCCchHH--H----HHHHHHH--hccCHHHHHHHHHHHHhc
Q 023081 168 AEVVYRKAQLIDPDANKA--C----NLSHCLI--KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~--~----~l~~~~~--~~g~~~~A~~~~~~~l~~ 211 (287)
|...+++....+|..... . .|..++. ....+.+++.-|...-.+
T Consensus 215 A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 215 ARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 999999999998876432 1 4555553 344566777776665554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.1e-08 Score=82.74 Aligned_cols=139 Identities=11% Similarity=-0.070 Sum_probs=100.7
Q ss_pred cCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH--------HHHHHHHH
Q 023081 48 AGDRVDSAL--KDMAVVLKQQDR---VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD--------EQIELLKQ 114 (287)
Q Consensus 48 ~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~ 114 (287)
..|.+..+| +..|.-+...++ ...|+.+|+++++++|+++ .++..++.+|.....+. .+....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a--~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT--YAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345665554 455666665544 8899999999999999987 44444455544332222 12222222
Q ss_pred HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHH
Q 023081 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLI 193 (287)
Q Consensus 115 al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~ 193 (287)
++ .+...|.++.++..+|..+...|++++|...+++++.++|+ ...+ .+|.++.
T Consensus 410 a~------------------------al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~ 464 (517)
T PRK10153 410 IV------------------------ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYE 464 (517)
T ss_pred hh------------------------hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 11 22345667888999999999999999999999999999995 4454 8999999
Q ss_pred hccCHHHHHHHHHHHHhccc
Q 023081 194 KQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 194 ~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|++++|+..|++++...+
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999853
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-07 Score=69.39 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=127.4
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG--DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
...++.+....++-++-+....+.+... ..+...+..-|.+|...|++++|+........+ ++.-.-..++
T Consensus 75 vr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~Al~VqI~ 147 (299)
T KOG3081|consen 75 VRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------EAAALNVQIL 147 (299)
T ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------HHHHHHHHHH
Confidence 3344444444555555554444443322 222234455567777888888888777663222 2222233456
Q ss_pred HHcCCHHHHHHHHHHHHhccch------hhhh-----cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 100 KKCGRLDEQIELLKQKLRMIYH------GEAF-----NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~------~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.+..+.+-|...++++.+++.+ +.+| .+....++--.++.+ ....|.++...+.++.++..+|+|++|
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~-s~k~~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL-SEKTPPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH-hcccCCChHHHccHHHHHHHhcCHHHH
Confidence 6667778888888888777652 2333 122344444444432 223455788899999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHh
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQE 231 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 231 (287)
...++.++..+++++... |+..+-..+|...++..-+-.-+....+.....+.+.....-+.+
T Consensus 227 e~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDr 290 (299)
T KOG3081|consen 227 ESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDR 290 (299)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 999999999999998886 888888899998888877766665543344444554444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.1e-08 Score=66.27 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.+++.+|.++-..|+.++|+.+|++++....... ....+..+|..+...|++++|+..+++++...|.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----------- 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----------- 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------
Confidence 4566677777777777777777777766543221 1245666666666667777777666666554442
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
++.+..+...++.++...|++++|+..+-.++.
T Consensus 71 ------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 ------------DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011344455566666666666666666655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-08 Score=77.31 Aligned_cols=176 Identities=18% Similarity=0.086 Sum_probs=126.5
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHH
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDE 107 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 107 (287)
++...||..|+.+++-....+... ......+|.|+++.|+|++|+..|.-+...+..+. .++..++-+++-.|.|.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHH
Confidence 567789999999998887665333 36677899999999999999999998877543334 789999999999999999
Q ss_pred HHHHHHHHHhccchhh--hhc----CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 108 QIELLKQKLRMIYHGE--AFN----GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 108 A~~~~~~al~~~~~~~--~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
|...-.++-+. |... .++ -...+....+-.. + .+..+-...++.+++..-.|.+|++.|++.+..+|+
T Consensus 110 A~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~--L---qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 110 AKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSS--L---QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHH--H---hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 99876665432 1100 000 0011111111111 0 112344566788888888999999999999998888
Q ss_pred chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 182 ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 182 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..... +++.||.++.-++-+.+.+.--++..
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 76664 89999999999998888887777663
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-08 Score=79.67 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
....|.++...|++++|++.+.+. ...+.......++...++++.|.+.++.+.+.+.+.....+...+..++..
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 344555555566666666655432 344555555666666666666666666665555554322222222222222
Q ss_pred cCCHHHHHHHHHHHHhccchh------h--hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHH
Q 023081 102 CGRLDEQIELLKQKLRMIYHG------E--AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY-TSAEVV 171 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~------~--~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~ 171 (287)
.+.+.+|...|+......+.. . +. ....++.|...+.. ++..+|+++.++.+++.+....|+. +.+.++
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~-al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE-ALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH-HCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 234666666666655544311 1 11 13345555555555 5667777999999999999999998 556678
Q ss_pred HHHHHhhCCCchHHH
Q 023081 172 YRKAQLIDPDANKAC 186 (287)
Q Consensus 172 ~~~al~~~~~~~~~~ 186 (287)
+.+....+|+++..-
T Consensus 259 l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 259 LSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHCHHHTTTSHHHH
T ss_pred HHHHHHhCCCChHHH
Confidence 888777889887553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-08 Score=76.79 Aligned_cols=102 Identities=16% Similarity=-0.006 Sum_probs=93.8
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVL 95 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l 95 (287)
.-.|..|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+++.. .....+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 347999999999999999999999999998876 7899999999999999999999999999999876432 678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|.+....|+.++|...|+++++.+|.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999995
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=64.36 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=58.8
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+..++...+++++|+..+++++..+|+++..+..+|.++...|++.+|+..++++++..|+++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 357889999999999999999999999999999999999999999999999999999999776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-07 Score=84.58 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=140.6
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHh-cCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN-AGDR----VDSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
+.+|+.+++...|++.-.|+.--..++..++.++|.+.+++|+. +++. ....|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34577789999999999999888888899999999999999996 3333 245566666666666777788889999
Q ss_pred HHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-hhhh-------cCC-ChhHHHHHHHHHhhhcCCC--
Q 023081 79 FRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-GEAF-------NGK-PTKTARSHGKKFQVTVKQE-- 147 (287)
Q Consensus 79 ~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~-------~~~-~~~~a~~~~~~~~~~~~~~-- 147 (287)
+.+.+... .++..|..+|...+.+++|.++++.+++.... -..| ... ..+++...+.+ ++..-|.
T Consensus 1523 Acqycd~~---~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~r-AL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYCDAY---TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKR-ALKSLPKQE 1598 (1710)
T ss_pred HHHhcchH---HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHH-HHhhcchhh
Confidence 98876543 47888999999999999999999999987652 1111 111 12334444444 4444444
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.......|.+-++.|+.+.+...|+..+...|...+.| -+...-.+.|+.+.....|++++..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 455555566666666666666666666666666665555 3555556666666666666666655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=78.49 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=101.4
Q ss_pred hhhHh---hcCCCCchHHHHhHHhHHhh---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 8 PYHVV---HKLPPGDSPYVRAKHVQLVE---------KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 8 ~~~~l---~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 75 (287)
+.+++ ..+|+.+.+|-.++.+++.. .+..+|.+..+++++++|.++.++..+|.+....|+++.|...
T Consensus 281 f~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~ 360 (458)
T PRK11906 281 FDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHIL 360 (458)
T ss_pred HHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHH
Confidence 34577 88899999999999888764 3466789999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 76 IKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 76 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|++++.++|+.+ ..++..|.+....|+.++|.+.++++++++|.
T Consensus 361 f~rA~~L~Pn~A--~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 361 FEQAKIHSTDIA--SLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHhhcCCccH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999998 78888999999999999999999999999984
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=66.52 Aligned_cols=104 Identities=15% Similarity=0.040 Sum_probs=87.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~ 93 (287)
.+..++..|...+..|+|.+|++.|+......|.. ..+...++.+|+..|++++|+..+++.++++|.++.. -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45778999999999999999999999988876654 6889999999999999999999999999999977411 3567
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGR---------------LDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~---------------~~~A~~~~~~al~~~~~ 121 (287)
..|.++..+.. ...|...|++.+...|+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 77777777765 67778888888877774
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=73.31 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++.|.-++..|+|..|...|...++..|+.. ..+++++||.+++.+|+|++|...|..+.+..|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 34444444444555555555555555444331 113344444444444444444444444444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=64.08 Aligned_cols=69 Identities=30% Similarity=0.462 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh-cCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT-VKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.++..+|.+|...|++++|+.+|++++++... .. ..|....++.++|.++...|++++|
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~a~~~~~lg~~~~~~g~~~~A 65 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQ--------------------LGDDHPDTANTLNNLGECYYRLGDYEEA 65 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------------------TTTHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------HCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 67888999999999999999999999987221 11 1122477899999999999999999
Q ss_pred HHHHHHHHhh
Q 023081 169 EVVYRKAQLI 178 (287)
Q Consensus 169 ~~~~~~al~~ 178 (287)
++++++++++
T Consensus 66 ~~~~~~al~i 75 (78)
T PF13424_consen 66 LEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-07 Score=75.79 Aligned_cols=160 Identities=20% Similarity=0.162 Sum_probs=120.7
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.++.--..+...++|++|+....+.+...|++..+...-..++.+.+.|++|+...+.-......+ ...+..+.|.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHH
Confidence 444445566788999999999999999999999999999999999999999995554432222222 23367788999
Q ss_pred HcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 023081 101 KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID- 179 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 179 (287)
+.+..++|+..++. + ++ .+..+....|.++++.|+|++|+..|+..++.+
T Consensus 91 rlnk~Dealk~~~~-~--~~--------------------------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG-L--DR--------------------------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HcccHHHHHHHHhc-c--cc--------------------------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 99999999999882 2 11 144566667888888888888888888765422
Q ss_pred -----------------------------CCc--hHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 180 -----------------------------PDA--NKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 180 -----------------------------~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|.+ ...+|.+.++...|++.+|++.++.++.+.
T Consensus 142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 211 123489999999999999999999995543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=81.52 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=66.2
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS---ALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
.+|+++.+++++|.++...|++++|+..|+++++++|++.. +|+++|.+|..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999975 49999999999999999999999999973
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.4e-07 Score=64.05 Aligned_cols=138 Identities=8% Similarity=-0.008 Sum_probs=115.5
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN-AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+...|+. .-.+.+|......|++.+|...|++++. ....++..+..++.+.+..+++..|...+++..+.+|......
T Consensus 83 ~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 83 LAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 4445543 3457899999999999999999999986 4467788999999999999999999999999999988432224
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
....++..+...|.+..|...|+.++...| .+......+..+.++|+.++|..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~yp---------------------------g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYP---------------------------GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHhcchhHHHH
Confidence 566788899999999999999999999988 47777788999999999998887
Q ss_pred HHHHHHh
Q 023081 171 VYRKAQL 177 (287)
Q Consensus 171 ~~~~al~ 177 (287)
.+....+
T Consensus 215 q~~~v~d 221 (251)
T COG4700 215 QYVAVVD 221 (251)
T ss_pred HHHHHHH
Confidence 7766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-07 Score=63.17 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
.+..++.-|......|+|++|++.|+.+....|...+ ..+...++.+|+..+++++|+..+++-+++.|.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--------- 79 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--------- 79 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 3577899999999999999999999999999985431 246888999999999999999999999999884
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCc
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN---------------YTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------------~~~A~~~~~~al~~~~~~ 182 (287)
+|+-..+++..|.++..+.. ..+|...|++.+...|++
T Consensus 80 --------------hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 80 --------------HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred --------------CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 34457888999998888766 555666666666655554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-06 Score=70.89 Aligned_cols=190 Identities=12% Similarity=0.160 Sum_probs=135.9
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN-AGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
++..+|++...|.. ++-+..|+..+-+..|.+|+. .+|.. ...|..+|..|...|+.+.|...|+++....-
T Consensus 341 lLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 56778988888866 455667899999999999985 45543 45788999999999999999999999988743
Q ss_pred hh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-h-hcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 85 KQ--AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-A-FNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 85 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
.. ....+|...|.+-....+++.|..+.+.+...-.... . |.+...-++. ..+ +..+|..++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r-lhr---------SlkiWs~y~DleE 488 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR-LHR---------SLKIWSMYADLEE 488 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH-HHH---------hHHHHHHHHHHHH
Confidence 21 2336888899999999999999999999887532211 1 1111111111 111 4566777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|-++.....|.+.+.+.--.|... |.|..+....-++++.+.|++.+.+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 77777777777777777666555553 77777777777777777777777764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-08 Score=60.70 Aligned_cols=61 Identities=30% Similarity=0.362 Sum_probs=44.0
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|++++|+..|++++..+|. +..++..+|.+|...|++++|...+++++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------------------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------------------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567777777777776666554 67777778888888888888888888877777
Q ss_pred CCchHHH
Q 023081 180 PDANKAC 186 (287)
Q Consensus 180 ~~~~~~~ 186 (287)
|+++.++
T Consensus 56 ~~~~~~~ 62 (68)
T PF14559_consen 56 PDNPEYQ 62 (68)
T ss_dssp TTHHHHH
T ss_pred cCHHHHH
Confidence 7765554
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=79.95 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=64.9
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH----HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA----CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
-..+|+++..|+++|.+|...|+|++|+..|+++++++|++..+ +++|.+|..+|+.++|+..++++++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999999999753 49999999999999999999999986
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-08 Score=61.97 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----hhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC----SKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
+...++.++|.+|...|++++|+.+|++++++. ++++ ....+..+|.++...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 345677888888888888888888888887652 1222 23567788888888888888888888887763
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-07 Score=66.73 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+..-|.-++..|+|++|..-|..++.+.|.. ....++...|.++.+++.++.|+....+++++.|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---------- 166 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---------- 166 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch----------
Confidence 34456777888889999999999999888843 23346777788888888899999888888888774
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 184 (287)
+..++...+.+|.++.+|++|++.|++.++.+|....
T Consensus 167 ----------------y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 167 ----------------YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred ----------------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 4556667888888888899999999999888887643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=60.26 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=42.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
..+|...+++++|++++++++..+|. ++..|...|.++...|++.+|...|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD--------------------------DPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc--------------------------cchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566667777777777766655543 5666777777777777777777777777
Q ss_pred HhhCCCchHH
Q 023081 176 QLIDPDANKA 185 (287)
Q Consensus 176 l~~~~~~~~~ 185 (287)
++..|+++..
T Consensus 56 l~~~p~~~~~ 65 (73)
T PF13371_consen 56 LELSPDDPDA 65 (73)
T ss_pred HHHCCCcHHH
Confidence 7777766544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-06 Score=58.55 Aligned_cols=98 Identities=18% Similarity=0.089 Sum_probs=84.8
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--hHHHHHHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--AQESLDNVLIDLYK 100 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~l~~~~~ 100 (287)
-..|......|+.+.|++.|.+++.+.|..+.++.+.+.++.-+|+.++|++-+++++++..+. .....+...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456666778999999999999999999999999999999999999999999999999986532 12245777899999
Q ss_pred HcCCHHHHHHHHHHHHhccc
Q 023081 101 KCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~ 120 (287)
..|+-+.|..-|+.+-++..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 99999999999999988754
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-05 Score=62.13 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
.+..++.-|....+.|++++|+..|+.+...+|..++. .+...++..+.+.++++.|+...++-+.+.|.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~--------- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT--------- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---------
Confidence 46789999999999999999999999999999965432 46778899999999999999999999999884
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCch---------------HH--
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKG--------NYTSAEVVYRKAQLIDPDAN---------------KA-- 185 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~---------------~~-- 185 (287)
+|+-..+++..|.++...= -..+|...|++.+...|+.. .+
T Consensus 104 --------------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 104 --------------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred --------------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 3445667777887765432 23678888889999888753 01
Q ss_pred -HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 186 -CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 186 -~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
..+|..|.+.|.+-.|+..++.+++.++..+.....+.+..+....++-.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~ 220 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLT 220 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCCh
Confidence 15789999999999999999999998755555566667777777666643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-06 Score=78.09 Aligned_cols=173 Identities=13% Similarity=0.023 Sum_probs=130.0
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQESL 91 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ 91 (287)
....+|.++...|++++|...+++++...+.. ..+...+|.++...|++++|...+++++...... .....
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34556788889999999999999998854432 2356778999999999999999999998764421 12235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
...++.++...|++++|...+++++...... .....+....++..+|.++...|++++|...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQ------------------HLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh------------------ccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6778999999999999999999998864310 0000011233456789999999999999999
Q ss_pred HHHHHhhCCCc-----hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 172 YRKAQLIDPDA-----NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 172 ~~~al~~~~~~-----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.+++...... ...+ .++.++...|++++|...+.++...
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998753321 1222 6899999999999999999998765
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-05 Score=61.41 Aligned_cols=199 Identities=25% Similarity=0.280 Sum_probs=144.8
Q ss_pred HhhcCCC--CchHHHHhHHhHHhhCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 11 VVHKLPP--GDSPYVRAKHVQLVEKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 11 ~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 49 ALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred HHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence 3444444 367778888888888999999999888886 667777888888999999999999999999988876654
Q ss_pred hHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhccch----hhhh--c------CCChhHHHHHHHHHhhhcCCC-cHHHH
Q 023081 87 AQESLDNVLID-LYKKCGRLDEQIELLKQKLRMIYH----GEAF--N------GKPTKTARSHGKKFQVTVKQE-TSRIL 152 (287)
Q Consensus 87 ~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~----~~~~--~------~~~~~~a~~~~~~~~~~~~~~-~~~~~ 152 (287)
. ......+. ++...|+++.|...+.+++...+. .... . ......+...+.. .+...+. ....+
T Consensus 129 ~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~ 205 (291)
T COG0457 129 D--LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK-ALKLNPDDDAEAL 205 (291)
T ss_pred c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH-HHhhCcccchHHH
Confidence 3 23333333 788889999999999998775541 1111 0 1134445555444 4556666 57888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++..+...+++.+|...+..++...|..... ..++..+...+..+++...+.+++...
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888988889999999999998888874333 366666667777888888888888764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-06 Score=62.92 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=87.7
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
.+-.-|.-++..|+|++|..-|..|+..-|.. .-.+.+.|.++.+++.++.|+.-+.++++++|.+. .+....
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RR 174 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERR 174 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHH
Confidence 34456788899999999999999999998875 33567889999999999999999999999999876 677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+.+|.+...|++|+.-|.+.++.+|.
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999994
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.7e-06 Score=77.27 Aligned_cols=174 Identities=14% Similarity=-0.031 Sum_probs=125.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-- 87 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-- 87 (287)
+......+.++...|++++|...+..+....+. .......++.++...|++++|...+++++...|...
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 445566778888889999999988887653221 123445577888889999999999999887544221
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 88 -QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 88 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
.......++.++...|++++|...+++++..... .........++..+|.++...|+++
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~--------------------~g~~~~~~~~~~~la~~~~~~G~~~ 548 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ--------------------HDVYHYALWSLLQQSEILFAQGFLQ 548 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--------------------hcchHHHHHHHHHHHHHHHHCCCHH
Confidence 1234567788888899999999999988876331 0000002346678999999999999
Q ss_pred HHHHHHHHHHhhCCCc-----h-H--H-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDA-----N-K--A-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~-----~-~--~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...+.+++...... . . . ..+|.++...|++++|...+++++...
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 9999999998753221 1 1 1 267889999999999999999988763
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-06 Score=61.53 Aligned_cols=186 Identities=13% Similarity=0.016 Sum_probs=127.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
+..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|.-+...|+++.|.+.|...++++|... -+..+.|..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lNRgi~ 142 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIA 142 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhcccee
Confidence 456788899999999999999999999999999999999999999999999999999999999999775 344455556
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhh---h---c--CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEA---F---N--GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~---~---~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
+.--|++.-|.+-+.+-.+.+|..+- | + ....+.|...+..-+...+. .-..|+..+ +-.|+..+ ..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~-e~WG~~iV~---~yLgkiS~-e~ 217 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK-EQWGWNIVE---FYLGKISE-ET 217 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccH-hhhhHHHHH---HHHhhccH-HH
Confidence 66669999999999988888775331 1 1 11233333322211111111 111122211 12233221 23
Q ss_pred HHHHHHhhCCCch-------HH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 171 VYRKAQLIDPDAN-------KA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 171 ~~~~al~~~~~~~-------~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.++++.....++. .. +.||.-+...|+.++|...|+-++..
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3444444333332 12 27899999999999999999999875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-06 Score=66.58 Aligned_cols=164 Identities=11% Similarity=-0.026 Sum_probs=107.8
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
.+..|.+-..+-.+|.+|+...++..|.++|++.-...|.........|..+++.+.+..|+.+....... |. .....
T Consensus 37 ~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~-L~~~~ 114 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PA-LHSRV 114 (459)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HH-HHHHH
Confidence 35678888889999999999999999999999999999998888888899999999999998877665442 21 11122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccc-hhhh------hcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIY-HGEA------FNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
...-+.+....+++..+..+.++.-.-+. .+.. |.....+.+..-+.. +++..--.+-+-++++.++++.|+
T Consensus 115 lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa-AlqvsGyqpllAYniALaHy~~~q 193 (459)
T KOG4340|consen 115 LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA-ALQVSGYQPLLAYNLALAHYSSRQ 193 (459)
T ss_pred HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH-HHhhcCCCchhHHHHHHHHHhhhh
Confidence 22333344444555554444443321111 0000 001112222222221 333333467888999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 023081 165 YTSAEVVYRKAQLI 178 (287)
Q Consensus 165 ~~~A~~~~~~al~~ 178 (287)
++.|+++..+.++.
T Consensus 194 yasALk~iSEIieR 207 (459)
T KOG4340|consen 194 YASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888763
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=73.57 Aligned_cols=186 Identities=11% Similarity=-0.038 Sum_probs=127.8
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
.-..|.-|+.+|.|++||++|.+++..+|.++..+.+.|.+|++...+..|..-+..++.++.... .+|...+..-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--KAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--HHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999887665 788888888889
Q ss_pred cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHH-HhhhcCCCcHHH---------HHHHHHHHHHcCCHHHHHHH
Q 023081 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKK-FQVTVKQETSRI---------LGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~---------~~~lg~~~~~~g~~~~A~~~ 171 (287)
.|...+|.+-++.++++.|....+... +....+..++ ......|....+ .-.-|..+...|.++.++..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~-~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~ 256 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKS-LARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVD 256 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHH-HHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeE
Confidence 999999999999999999853322100 0000000000 011111111111 12346666777777777777
Q ss_pred HHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 172 YRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 172 ~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+-+-+....++...- + +..+.+.-++++|+.--.+++..
T Consensus 257 ~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~ 296 (536)
T KOG4648|consen 257 VVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP 296 (536)
T ss_pred eeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence 766555443333322 3 55666666666766555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=58.21 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARS 135 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~ 135 (287)
+-.-|..+...|+.+.|++.|.+++.+.|..+ .++++.++.+.-+|+.++|++-+++++++... ....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~----------~trt 113 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGD----------QTRT 113 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCc----------cchH
Confidence 34567778888999999999999999999888 78999999999999999999999999887542 0000
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 136 HGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
-..++...|.+|...|+-+.|...|..+-++...+.
T Consensus 114 ------------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 114 ------------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred ------------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 244577788999999999999999998888776653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-05 Score=60.32 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.+.+.++.++.-.|+|.-++..+.+.++.+| ..+ .+...++.+..+.|+.+.|..+|+.+-+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~------------ 243 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ------------ 243 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHh------------
Confidence 4566788888899999999999999999985 445 6788899999999999999999997765433
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+..-.....+..+.+.+|.-.+++..|...|.+++..+|.++.+. +-+.|+.-+|+..+|++.++.++..
T Consensus 244 --------kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 244 --------KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred --------hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222233566778889999999999999999999999999998886 8899999999999999999999987
Q ss_pred c
Q 023081 212 K 212 (287)
Q Consensus 212 ~ 212 (287)
.
T Consensus 316 ~ 316 (366)
T KOG2796|consen 316 D 316 (366)
T ss_pred C
Confidence 4
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=67.25 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=109.7
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------------------------CHHHHHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------------------------VDSALKDMAVVLK 64 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------------------------~~~~~~~la~~~~ 64 (287)
++++.+|+.+++|..++.-. .....+|.++|+++++.+.. .+.+...+|.|..
T Consensus 193 eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 193 EALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 46777777777777766532 22355666666666543211 0233446777777
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV 144 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 144 (287)
+.|+.++|++.++..++..|......+...+..++...+.|.++...+.+--++.
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~------------------------- 325 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS------------------------- 325 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-------------------------
Confidence 7777777777777777776643323567777777777777777777766632221
Q ss_pred CCCcHHHHHHHHHHHHH-------------cCC---HHHHHHHHHHHHhhCCCchHHH----HHH---HHHHhccCHHHH
Q 023081 145 KQETSRILGNLGWAYMQ-------------KGN---YTSAEVVYRKAQLIDPDANKAC----NLS---HCLIKQARYTEA 201 (287)
Q Consensus 145 ~~~~~~~~~~lg~~~~~-------------~g~---~~~A~~~~~~al~~~~~~~~~~----~l~---~~~~~~g~~~~A 201 (287)
-|+++.+.+.-+.+-.+ .|- -..|.+.+.+|++.+|.-+.+. .|. .-..+.|+ .||
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEA 404 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEA 404 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHH
Confidence 12233444433333222 110 1347789999999999887664 221 22345665 788
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHHHH
Q 023081 202 RSVLEDVLLGKLSGSTETKTINRVKELLQ 230 (287)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 230 (287)
+.+---.+ .+|+...-|.++|.
T Consensus 405 iaYAf~hL-------~hWk~veGAL~lL~ 426 (539)
T PF04184_consen 405 IAYAFFHL-------QHWKRVEGALNLLH 426 (539)
T ss_pred HHHHHHHH-------HHHhcCHhHHHHHH
Confidence 87766666 35555455555554
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-06 Score=67.32 Aligned_cols=178 Identities=9% Similarity=-0.026 Sum_probs=128.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--h--HH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--A--QE 89 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~--~~ 89 (287)
.+++.++++.+...-++.+++.+-...+..-.. ..++...+|.++.-.+.++++++.|++++....++ + ..
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 356777888877777888888777666554321 23567778899999999999999999998875432 2 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++..+|.+|....++++|.-+..++.++...- ..++....+ ..-+++.++..+..+|+.-.|.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~------~l~d~~~ky----------r~~~lyhmaValR~~G~LgdA~ 226 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY------GLKDWSLKY----------RAMSLYHMAVALRLLGRLGDAM 226 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc------CcCchhHHH----------HHHHHHHHHHHHHHhcccccHH
Confidence 457788899999999999999988888774310 000000000 2456788999999999999999
Q ss_pred HHHHHHHhhCCC--c-hHH----HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPD--A-NKA----CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~--~-~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.+++.++.-. + +.. ..+|.+|...|+.+.|..-|+++....
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 999998775432 2 211 168999999999999999999988753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-06 Score=65.28 Aligned_cols=138 Identities=17% Similarity=0.067 Sum_probs=99.5
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh------------
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA------------ 87 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------------ 87 (287)
+.-.-+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+||.+++..|.|.+|.....++ |+++
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHH
Confidence 455678999999999999999998888766666789999999999999999998877664 2221
Q ss_pred ------HH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 88 ------QE----------SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 88 ------~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
+. +-...++.+.+..-.|++|++.|.+++.- +|+....
T Consensus 134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--------------------------n~ey~al 187 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--------------------------NPEYIAL 187 (557)
T ss_pred hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--------------------------Chhhhhh
Confidence 00 11223344444444555555555555444 4445566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHH
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 187 (287)
...++.||+++.-|+-+-+.++-.++..|+.+.+.+
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 677888888888888888888888888888876653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.8e-05 Score=58.79 Aligned_cols=192 Identities=23% Similarity=0.200 Sum_probs=146.5
Q ss_pred CchHHHHhHHhHHh-hCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hchhhhHHHHH
Q 023081 18 GDSPYVRAKHVQLV-EKDPEAAIVLFWKAINAGDR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRH--LCSKQAQESLD 92 (287)
Q Consensus 18 ~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~ 92 (287)
........+..... .+.+..+...+...+...+. ........+..+...+.+..+...+..... ..+... ..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (291)
T COG0457 21 EALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA--EAL 98 (291)
T ss_pred hHHHHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH--HHH
Confidence 33333444444343 57888999999999988876 378899999999999999999999999987 455544 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchh--------h-hh-cCCChhHHHHHHHHHhhhcCC---CcHHHHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------E-AF-NGKPTKTARSHGKKFQVTVKQ---ETSRILGNLGWAY 159 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~-~~-~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~lg~~~ 159 (287)
...+..+...+++..++..+..++...+.. . .+ .......+...+.+ ++...| .........+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK-ALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCccchHHHHHHhhhHH
Confidence 888889999999999999999999866532 1 12 33455666666665 345555 3556666677778
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC-chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPD-ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~-~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...+++..|+..+.+++...+. ....+ .++.++...+++..|...+..++...
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888999999999999998888 45554 88888988999999999999988874
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=62.35 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcC
Q 023081 69 VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC---GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVK 145 (287)
Q Consensus 69 ~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 145 (287)
++.|.+.++.....+|.++ ..+...|..+... ....++.++++.++..... ++.++
T Consensus 7 FE~ark~aea~y~~nP~Da--dnL~~WG~ALLELAqfk~g~es~~miedAisK~ee-------------------AL~I~ 65 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA--DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEE-------------------ALKIN 65 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH-------------------HHHH-
T ss_pred HHHHHHHHHHHHHhCcHhH--HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH-------------------HHhcC
Confidence 4566677777777777665 4444444444443 3334566666666554432 67777
Q ss_pred CCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchHHH
Q 023081 146 QETSRILGNLGWAYMQKGN-----------YTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~ 186 (287)
|+...+++.+|.+|...+. |++|..+|+++...+|++..+.
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 7789999999999987654 6788888999999999987665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-07 Score=71.67 Aligned_cols=96 Identities=21% Similarity=0.151 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
-..|+-|+++|.|++|+++|.+++..+|. ++..+.+.+.+|++...|..|...+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~--------------------------NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH--------------------------NPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC--------------------------CccchhhHHHHHHHHHHHHHHHHhH
Confidence 45688999999999999999999888775 7888889999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccC
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLS 214 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 214 (287)
..++.++.....++ ..+.+-..+|...+|.+-++.++++.+.
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 99999988887777 7788888999999999999999988544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.7e-05 Score=55.78 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=118.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH----
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG----DR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ---- 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 88 (287)
.+.+...|..|-..++|+.|=..|.++-... .. ....+...+.+|.+ ++.++|+.++++++++..+-..
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4566777888888888888888887775432 21 23445555555544 4999999999999998775431
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 89 ESLDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 89 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
......+|.+|... .++++|+.+|+++-+.+.... ... ..-..+...+..-...++|.+
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~s-----------sANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVS-----------SANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhh-----------hHHHHHHHHHHHHHHHHHHHH
Confidence 12355788888765 889999999998877654200 000 012335556677778899999
Q ss_pred HHHHHHHHHhhCCCchHH-H-------HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDANKA-C-------NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~-~-------~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+..|++.....-+++.. | .-|.|+.-..+.-.+...+++-.+..
T Consensus 173 Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 999999988766665432 2 45777777777777777777777764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00035 Score=62.38 Aligned_cols=210 Identities=15% Similarity=0.045 Sum_probs=142.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+.-+++++.|+...+...-|....+.|..++|..+++..-...+++...+..+-.+|...|++++|...|++++..+|..
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSE 110 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcH
Confidence 44568899999999999999999999999999988877666677777888899999999999999999999999999983
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-c------------------CCChhHHHHHHHHHhhhcC-C
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-N------------------GKPTKTARSHGKKFQVTVK-Q 146 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~------------------~~~~~~a~~~~~~~~~~~~-~ 146 (287)
.....+-.+|.+.+.|.+-.+.--+..+..|...-| + +....-|....+. .+... +
T Consensus 111 ---ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~-~l~~~gk 186 (932)
T KOG2053|consen 111 ---ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK-LLEKKGK 186 (932)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH-HhccCCc
Confidence 455555556677777766555544455555521111 0 1112233344443 22222 2
Q ss_pred Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCchHHH--HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhH
Q 023081 147 ET--SRILGNLGWAYMQKGNYTSAEVVYRKA-QLIDPDANKAC--NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKT 221 (287)
Q Consensus 147 ~~--~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 221 (287)
-. .++. ..-.++..+|++++|+..+..- .+..+..+... .-...+..++++.+-.+...+++.. ++++++.
T Consensus 187 ~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Ddy~~ 262 (932)
T KOG2053|consen 187 IESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK---GNDDYKI 262 (932)
T ss_pred cchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---CCcchHH
Confidence 11 2222 2234567889999999999433 33333333332 4567778899999999999999987 4454544
Q ss_pred HHH
Q 023081 222 INR 224 (287)
Q Consensus 222 ~~~ 224 (287)
+..
T Consensus 263 ~~~ 265 (932)
T KOG2053|consen 263 YTD 265 (932)
T ss_pred HHH
Confidence 333
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=65.29 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
+-.-|..++....|..|+..|.++|..+|..+..+.+.+.++.+..+++.+..-..+++++.|+.+ ...+.+|.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v--k~h~flg~~~l~ 90 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV--KAHYFLGQWLLQ 90 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH--HHHHHHHHHHHh
Confidence 344567778888999999999999999999999999999999999999999999999999999987 778889999999
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 023081 102 CGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~ 119 (287)
...|++|+..+.++..+.
T Consensus 91 s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hccccHHHHHHHHHHHHH
Confidence 999999999999997764
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=63.19 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=124.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh------
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ------ 86 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------ 86 (287)
......+|.++...+.++++++.|+.|++...++ .++...||..|.+..++++|+-+..++.++....
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 3556678999999999999999999999875332 4678899999999999999999999998774311
Q ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 87 --AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 87 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
...-..+.++..+..+|+...|.++.+++.++.- . ....+-......-+|.+|...|+
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--------------~------~Gdra~~arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--------------Q------HGDRALQARCLLCFADIYRSRGD 261 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--------------H------hCChHHHHHHHHHHHHHHHhccc
Confidence 0113466788889999999999999999988732 0 00112245667789999999999
Q ss_pred HHHHHHHHHHHHhhCCCch----HH--H-HHHHHHHhccCHH-----HHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDAN----KA--C-NLSHCLIKQARYT-----EARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~----~~--~-~l~~~~~~~g~~~-----~A~~~~~~~l~~ 211 (287)
.+.|..-|+++......-. .. . ..+.++....-.. .|+++-.++++.
T Consensus 262 ~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~lev 320 (518)
T KOG1941|consen 262 LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEV 320 (518)
T ss_pred HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 9999999999987543321 11 1 4555554333222 266655555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=49.00 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=27.1
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAV 61 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 61 (287)
.+++.+|..+...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666666666666666666666666666666666553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-05 Score=61.33 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=109.0
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ-QDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
+|....+.....+..+.|...|.++.+..+-...+|...|.+-+. .++.+.|..+|+.+++..|.+. .++....+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHH
Confidence 456666777777779999999999997666667899999999777 5666779999999999999887 7888888899
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...++.+.|..+|++++...+... ....+|......-...|+.+......+++.+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~-----------------------~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEK-----------------------QSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHH-----------------------HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchh-----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998755200 024567777888888999999999999999988
Q ss_pred CCchH
Q 023081 180 PDANK 184 (287)
Q Consensus 180 ~~~~~ 184 (287)
|+...
T Consensus 138 ~~~~~ 142 (280)
T PF05843_consen 138 PEDNS 142 (280)
T ss_dssp TTS-H
T ss_pred hhhhH
Confidence 87543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=48.57 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSH 190 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~ 190 (287)
|.++..+|.+|...|++++|+..|+++++.+|+++.++ .+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45788999999999999999999999999999999887 6664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=55.64 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=115.6
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh---HH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA---QE 89 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~ 89 (287)
.+.|...+..|...+++++|-.++.++++-..++ +.++-..|.+......+.++..+++++..+.-.+. ..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4667788888889999999999999998655444 23445566777777888999999999877643221 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
......+--..+.-++++|+.+|++++.+...+. ..+. -.+.+...+.++.+..+|++|-
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~d-----r~~m---------------a~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDD-----RDQM---------------AFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-----hHHH---------------HHHHHHHhhhHhhhhHHhhHHH
Confidence 1222223334566788889999888887644211 0111 1334555778888888888888
Q ss_pred HHHHHHHhhCCC---chHH---H-HHHHHHHhccCHHHHHHHHHHHHhcc-cCCCCchhH
Q 023081 170 VVYRKAQLIDPD---ANKA---C-NLSHCLIKQARYTEARSVLEDVLLGK-LSGSTETKT 221 (287)
Q Consensus 170 ~~~~~al~~~~~---~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 221 (287)
..+.+-...... .+.. + ....++.-..++..|...++..-+.. ..++.+..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 777764332111 1111 1 33444555668888888888877664 333444433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.8e-06 Score=59.89 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR----------VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++++.++|+.. .++..+|..|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 4566666766677777777777776666655532 4556666666677777654 455555555554332
Q ss_pred -----------HHHHHHHHHHHHhccch
Q 023081 105 -----------LDEQIELLKQKLRMIYH 121 (287)
Q Consensus 105 -----------~~~A~~~~~~al~~~~~ 121 (287)
|++|..+|+++...+|.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444455555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-05 Score=63.65 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=116.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHH--------HHHH----HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMA--------VVLK----QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la--------~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
.||-+.+++.+.++.+. ++.-.....+. ..+. .....+.|.+.+.......|+.+ -.....|.++
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~gR~~ 277 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFEGRLE 277 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 68999999999998773 33211111111 1111 24567889999999999999987 4566778899
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|+.++|++.|++++..... .+.+ ..-.++.+|+++..+++|++|..+|.+..+.+
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~---------------~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSE---------------WKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhh---------------HHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 9999999999999998854221 1111 35668899999999999999999999999876
Q ss_pred CCchHHH--HHHHHHHhccCH-------HHHHHHHHHHHhcc
Q 023081 180 PDANKAC--NLSHCLIKQARY-------TEARSVLEDVLLGK 212 (287)
Q Consensus 180 ~~~~~~~--~l~~~~~~~g~~-------~~A~~~~~~~l~~~ 212 (287)
.-....+ ..|.|+...|+. ++|..+|.++-...
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 6655544 688999999999 88888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=60.35 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=113.9
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQESLDNVL 95 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~l 95 (287)
..+.+..++...|.|.-.++.+.+.++.+ |..+.....||.+-++.|+.+.|..+|++.-+.... ..-.-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34667778888899999999999999988 667888999999999999999999999976543221 1111356677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+.+|.-++++.+|...|.+.+..++. ++.+.++.|.|..-.|+..+|++....+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~--------------------------~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR--------------------------NAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC--------------------------chhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999988877664 7888899999999999999999999999
Q ss_pred HhhCCCc
Q 023081 176 QLIDPDA 182 (287)
Q Consensus 176 l~~~~~~ 182 (287)
+...|..
T Consensus 313 ~~~~P~~ 319 (366)
T KOG2796|consen 313 VQQDPRH 319 (366)
T ss_pred hccCCcc
Confidence 9999986
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00014 Score=67.76 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=93.0
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
..-|.-+...+.|++|.+..... .++..|..+|...+.+++|.++++..++...+.. ..|..++..++.+.+-++|.
T Consensus 1508 n~yG~eesl~kVFeRAcqycd~~-~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1508 NAYGTEESLKKVFERACQYCDAY-TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HhhCcHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHH
Confidence 33445555556666665544322 4566666666666666666666666666555333 46666666666666666666
Q ss_pred HHHHHHHhccchhh-----------hhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 110 ELLKQKLRMIYHGE-----------AFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 110 ~~~~~al~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
..+.+|++.-|... .|.....+.....++. .+...|.-.++|.-+...-.+.|+.+.+...|++++.+
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg-ll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG-LLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH-HHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 66666666655200 0111123334444444 45556668899999999999999999999999999886
Q ss_pred CC
Q 023081 179 DP 180 (287)
Q Consensus 179 ~~ 180 (287)
.-
T Consensus 1664 ~l 1665 (1710)
T KOG1070|consen 1664 KL 1665 (1710)
T ss_pred CC
Confidence 53
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.9e-07 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=24.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAV 73 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 73 (287)
|+++|+.+|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777877777777777775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00021 Score=61.68 Aligned_cols=193 Identities=11% Similarity=0.065 Sum_probs=118.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-------h
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-DR---VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK-------Q 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~ 86 (287)
....|...|..|...|+.+.|...|+++.... +. -..+|..-|..-....+++.|+.+.+++...-.+ +
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 34678899999999999999999999999876 22 2678999999999999999999999998754211 0
Q ss_pred ---h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--h------h-cCCChhHHHHHHHHHhhh--cCC
Q 023081 87 ---A------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--A------F-NGKPTKTARSHGKKFQVT--VKQ 146 (287)
Q Consensus 87 ---~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~------~-~~~~~~~a~~~~~~~~~~--~~~ 146 (287)
+ ...+|..++++-...|-++.....|++.+.+.-..+ + + ....+..+-..+++ .+. ..|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr-gI~LFk~p 544 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER-GISLFKWP 544 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc-CCccCCCc
Confidence 0 124677788888888999999999999988643100 0 0 11122222222222 222 223
Q ss_pred CcHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhhCCCc-hHHH--HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 147 ETSRILGNLGWA---YMQKGNYTSAEVVYRKAQLIDPDA-NKAC--NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 147 ~~~~~~~~lg~~---~~~~g~~~~A~~~~~~al~~~~~~-~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+-.++|+..-.. -+..-..+.|...|+++++..|.. .... ..+..-..-|--..|+.+|+++-..
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 334444332211 222335566666666666655422 1111 3344444455566666666665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00016 Score=56.73 Aligned_cols=161 Identities=15% Similarity=0.043 Sum_probs=101.7
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...=....+.. +..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~----~~~---- 205 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA----AHG---- 205 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH----HHH----
Confidence 344556666677778888888888888888888888888888888888888887776655322222211 110
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
....++.+.++-...+ .....+ .+..+|++..+-+.+|..+...|+.+.|++.+-..+..
T Consensus 206 ------l~a~i~ll~qaa~~~~------------~~~l~~--~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 206 ------LQAQIELLEQAAATPE------------IQDLQR--RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred ------HHHHHHHHHHHhcCCC------------HHHHHH--HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111333333333221 111111 46677889999999999999999999999999888887
Q ss_pred CCCch--HHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 179 DPDAN--KAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 179 ~~~~~--~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
+.... ... .+-.++...|..+.+...+++
T Consensus 266 d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 266 DRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 65542 222 566666666644444444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0007 Score=55.18 Aligned_cols=180 Identities=14% Similarity=0.061 Sum_probs=129.3
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL---------------------------- 82 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------- 82 (287)
..|+.+.|+.+-+.+-...|.-..++...-......|+++.|++..+.....
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 3466666666666666666666666666666667778888888877554321
Q ss_pred -------------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh----cCCChhHHHHHHHHH--hhh
Q 023081 83 -------------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF----NGKPTKTARSHGKKF--QVT 143 (287)
Q Consensus 83 -------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~~--~~~ 143 (287)
.|+.. .....-+..+++.|+..++-.+++.+.+..|+.... ..+.-+.+..-+++. ...
T Consensus 246 ~~Ar~~A~~a~KL~pdlv--Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 246 ASARDDALEANKLAPDLV--PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHHHHHhhcCCccc--hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 11111 234445677888888888888999999988865443 122222333333322 356
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH-hccCHHHHHHHHHHHHhcc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLI-KQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 212 (287)
+.|++.+.....+..-+..|+|..|..--+.+....|....+..|+.+-. ..|+-.+...++.++++..
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999888777778888875 4599999999999999873
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-06 Score=44.21 Aligned_cols=34 Identities=41% Similarity=0.615 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00045 Score=56.92 Aligned_cols=169 Identities=14% Similarity=0.016 Sum_probs=108.4
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhc-hhhhHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINA----GDRVDSALKDMAVVLKQ---QDRVDEAVEAIKSFRHLC-SKQAQESL 91 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~-p~~~~~~~ 91 (287)
+....+=..|....+|+.-+.+.+..-.. -++...+.+.+|.++.+ .|+.++|+..+..++... +.++ ..
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~--d~ 219 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP--DT 219 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh--HH
Confidence 34445555677778898888888666554 34456778899999999 899999999999965543 3444 56
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 92 DNVLIDLYKKC---------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 92 ~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
+..+|.+|... ...++|+..|.++.++.++ ...-.|++.++...
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~---------------------------~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD---------------------------YYSGINAATLLMLA 272 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc---------------------------ccchHHHHHHHHHc
Confidence 77777766432 2477888888888888752 22223344444444
Q ss_pred CCHHHHHHHHHHHH--------hh--CCCchHHH---HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchh
Q 023081 163 GNYTSAEVVYRKAQ--------LI--DPDANKAC---NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETK 220 (287)
Q Consensus 163 g~~~~A~~~~~~al--------~~--~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 220 (287)
|.-.+...-.++.. +. -.....+| .++.+..-.|++++|.++++++++. .++.|.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l---~~~~W~ 340 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL---KPPAWE 340 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCcchh
Confidence 43222221111111 00 11223455 6888889999999999999999987 456653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.2e-05 Score=59.23 Aligned_cols=153 Identities=10% Similarity=-0.012 Sum_probs=90.6
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhhh-HHHHHHHHHHHHHHcCCHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-CSKQA-QESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A 108 (287)
.+|++.+|....++.+...|.+.-++..--.+++.+|+...-...+++.+.. +|+.+ ...+.-.++..+.+.|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444555555555555555555444444445555555555555555555443 33322 011222334444455555555
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN----- 183 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----- 183 (287)
.+.-++++ ++++.+.-+...++.++...|++.++.++..+.-..-.+..
T Consensus 195 Ek~A~ral--------------------------qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 195 EKQADRAL--------------------------QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred HHHHHhhc--------------------------cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 55555544 44555778888889999999999999998877543322211
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Q 023081 184 KACNLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 184 ~~~~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
..|+.+.++..-++++.|..+|.+-+
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHH
Confidence 23467888888899999999997655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=43.19 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0015 Score=53.35 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=112.5
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
+-.++.-++..+..|+++.|.+-|+.++. +|.. .-.+..|-.--...|..+-|..+-+++....|.-.| .+...-.
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~W--A~~AtLe 196 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPW--AARATLE 196 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCch--HHHHHHH
Confidence 34455667888899999999999976653 4443 112333333445789999999999999999998763 4444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchh----------------hhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHG----------------EAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
..+..|+|+.|+++.+......... ..........+.+.-.. ++++.|+-...-..-+..+++
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~-a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE-ANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-HhhcCCccchHHHHHHHHHHh
Confidence 6678899999999988776632210 00111122333333333 678888888888888999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~ 182 (287)
.|+..++-..++.+.+..|..
T Consensus 276 d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred ccchhhhhhHHHHHHhcCCCh
Confidence 999999999999998877754
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00055 Score=57.55 Aligned_cols=170 Identities=17% Similarity=0.137 Sum_probs=117.5
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----------
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---------- 86 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------- 86 (287)
+....-..+-+-.....++..-++.-.+|++.+|+.+.++..||.-. .....+|..+++++++.....
T Consensus 166 D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 166 DALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred CccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 33444455566678889999999999999999999999998887622 234677777777776543211
Q ss_pred -------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 87 -------------AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 87 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
+...+-..++.+..+.|+.++|++.++..++..|.. +...+..
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------------------------~~l~Ire 299 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------------------------DNLNIRE 299 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------------------------chhhHHH
Confidence 112345568889999999999999999998876631 1456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHH-HHHHHHHh-ccC---------------HHHHHHHHHHHHhcc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLID-PDANKAC-NLSHCLIK-QAR---------------YTEARSVLEDVLLGK 212 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~-~l~~~~~~-~g~---------------~~~A~~~~~~~l~~~ 212 (287)
++..++...+.|.++...+.+.-++. |.....+ .-+.+..+ .++ ...|.+.+.+|++.+
T Consensus 300 nLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 300 NLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999988864332 3333332 22222111 111 134677888888865
|
The molecular function of this protein is uncertain. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00061 Score=49.05 Aligned_cols=108 Identities=24% Similarity=0.279 Sum_probs=76.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhc---C-CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---G-KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
+......++.+.++..+++++.+... ..+. . .........++.. ...+...++..+...|++++|+..
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G-~~l~~~~~~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRG-DFLPDLDDEEWVEPERERLREL-------YLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--S-STTGGGTTSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCC-CCCCCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCHHHHHHH
Confidence 44445567888888888888887642 1111 1 1122222222221 356777889999999999999999
Q ss_pred HHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 172 YRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 172 ~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+++++..+|.+...+ .+..++...|+..+|+..|++....
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999998887 8999999999999999999988764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=41.95 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+|+++|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.9e-05 Score=64.65 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=119.8
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhch------hhhHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF-RHLCS------KQAQESLDNVL 95 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p------~~~~~~~~~~l 95 (287)
.+.-+.++...+...+..-...++....+.+.+....+..++..|++.+|.+.+... +...| .-....+++.+
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 334455566677777777777788777888899999999999999999999988765 22222 21222457899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|-++++.|.|.-+..+|.+++...-. ..-+|-..... ..-.......+.++.|..|...|++-.|.++|.++
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~-qL~~g~~~~~~-------~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCS-QLRNGLKPAKT-------FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHH-HHhccCCCCcc-------eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999972210 00011000000 00011225788999999999999999999999999
Q ss_pred HhhCCCchHHH-HHHHHHHh
Q 023081 176 QLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~ 194 (287)
......+|..| .|+.|++.
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999998 89999864
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-05 Score=59.52 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=73.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|..++...+|+.|+.+|.+++.++|. .+..|.+.+.+|++..+++.+....+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~--------------------------~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPT--------------------------VASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCC--------------------------cchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 44455556778888888877777664 5677888899999999999999999999
Q ss_pred HhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 176 QLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 176 l~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+++.|+.... +.+|.+......+++|+..+.++.+..
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999888766 488999988899999999999886654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0015 Score=50.55 Aligned_cols=192 Identities=15% Similarity=0.114 Sum_probs=111.6
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHh----------
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVD--------------EAVEAIKSFRHL---------- 82 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------------~A~~~~~~~~~~---------- 82 (287)
+-++..|+|..++..-++.-... ....-...+...|..+|.+. .|+..+...++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHH
Confidence 44455677877777665543332 45556666666776666532 222222221111
Q ss_pred -------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch---hhhh-cCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 83 -------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH---GEAF-NGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 83 -------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
............-+.+|...|++++|.+.......+.-. ..++ .....+.++..+++ ...++. -.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~-mq~ide--d~t 171 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKK-MQQIDE--DAT 171 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccch--HHH
Confidence 100010023334567888999999999988875443221 1111 12234455555554 233332 233
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 152 LGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 152 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
+..||..+.. .+++.+|.-+|++.-...|..+... .++.|+..+|++++|...++.++.. ++.++..+...
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k---d~~dpetL~Nl 247 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK---DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc---cCCCHHHHHHH
Confidence 4444444432 3578999999999887555555554 8999999999999999999999987 44444443333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00023 Score=57.19 Aligned_cols=131 Identities=8% Similarity=-0.016 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK-CGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
-+|..+.....+.+..+.|..+|.+++...+... .+|...|.+-.. .++.+.|..+|+.+++..+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~----------- 68 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFPS----------- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----------
Confidence 3677777888888889999999999985544333 678888888666 56666699999999988775
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhccCHHHHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQARYTEARSVLEDV 208 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~ 208 (287)
+...|......+...|+.+.|...|++++..-+... ..| .....-...|+.+....+.+++
T Consensus 69 ---------------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 69 ---------------DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp ----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788899999999999999999999999998766655 345 5677778889999999988888
Q ss_pred Hhcc
Q 023081 209 LLGK 212 (287)
Q Consensus 209 l~~~ 212 (287)
.+..
T Consensus 134 ~~~~ 137 (280)
T PF05843_consen 134 EELF 137 (280)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00065 Score=60.44 Aligned_cols=171 Identities=10% Similarity=0.071 Sum_probs=104.7
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
-...+......|-.++|..+|++.-+ +-.|-..|...|.+++|.+..+.--++.-. +.++..+.-+..
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEA 870 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHh
Confidence 33445555666667777777765532 223445666677777776655432222222 356667777788
Q ss_pred cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 023081 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--- 178 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 178 (287)
.++.+.|+++|+++-.......-......+..+.++++ ..++..|...|..+...|+.+.|+.+|..+-..
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 88999999998876332111000011122233333332 235677777888888899999999888876541
Q ss_pred ------------------CCCchHH-HHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 179 ------------------DPDANKA-CNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 179 ------------------~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+..+ +.||+.|...|+..+|+.+|.++-.
T Consensus 945 VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1122233 4899999999999999999987654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0012 Score=50.09 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=103.5
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhh----
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD------SALKDMAVVLKQQ-DRVDEAVEAIKSFRHLCSKQ---- 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~---- 86 (287)
.++.|...+.+|- +.++.+|+.++++++++..+.. ..+..+|.+|-.. .++++|+.+|+++-+.....
T Consensus 73 aat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 3456666666654 5589999999999998765432 3355788888665 89999999999998765422
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
.-.......+..-...++|.+|+..|++.....-+.. .++. .--..++.-|.|+.-..+.-
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~------------LLKy-------s~KdyflkAgLChl~~~D~v 212 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN------------LLKY-------SAKDYFLKAGLCHLCKADEV 212 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HHHh-------HHHHHHHHHHHHhHhcccHH
Confidence 1113455566666777999999999998876532110 0000 01233566788888889998
Q ss_pred HHHHHHHHHHhhCCCchHH
Q 023081 167 SAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~ 185 (287)
.+...+++..+++|.+...
T Consensus 213 ~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 213 NAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHhcCCccccc
Confidence 8999999999999988554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00062 Score=60.56 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=100.2
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhchhhh-------
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF----------RHLCSKQA------- 87 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------~~~~p~~~------- 87 (287)
+-+.|...|.|++|.+.-+.-=++ .--..+++.|.-+...++.+.|+++|+++ +.-+|...
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 445556667777666654322111 11357889999999999999999999987 22344321
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 88 -QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 88 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
-..++...|......|+.+.|+.+|..+-.......+. .|+..+.+.- .....+..+.+.+|..|...|+
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i-------A~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI-------AEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH-------HHhcccHHHHHHHHHHhhhhHH
Confidence 11467888998899999999999999988766543332 4444333322 2224467888999999999999
Q ss_pred HHHHHHHHHHHHh
Q 023081 165 YTSAEVVYRKAQL 177 (287)
Q Consensus 165 ~~~A~~~~~~al~ 177 (287)
+.+|+.+|.++-.
T Consensus 983 v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.001 Score=49.04 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcH
Q 023081 71 EAVEAIKSFRHLCSKQAQES-LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETS 149 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (287)
+.....++....+|...+.. ....++..+...|++++|...++.++....+ +.+ ..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-------------e~l----------k~ 126 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD-------------ENL----------KA 126 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-------------HHH----------HH
Confidence 45556666666665543222 3566788889999999999999998876432 111 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA--CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+-.++|.+...+|.+++|+..+.... ++..... -..|.++...|+.++|+..|++++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 456779999999999999998887653 2233332 26899999999999999999999987
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00059 Score=49.15 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=73.2
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDR----------------------VDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
..|......++.+.++..+++++.+... ...+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 3455666778999999999999976421 123444678888999999999999999999
Q ss_pred hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
.+|-+- .++..+..+|...|+..+|+..|++.....
T Consensus 91 ~dP~~E--~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 91 LDPYDE--EAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999876 789999999999999999999999887653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.1e-05 Score=41.97 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=17.3
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 141 QVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 141 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
+++.+|+++.+|+++|.+|...|++++|+
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666666666666666666665554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00075 Score=58.33 Aligned_cols=122 Identities=14% Similarity=-0.015 Sum_probs=99.3
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcCCHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
..+.+.|.+.+.......|+.+-..+..|.++...|+.++|++.|++++....... ..-.+..++.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 55778899999999999999999999999999999999999999999885433221 1135777888999999999999
Q ss_pred HHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhh
Q 023081 110 ELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY-------TSAEVVYRKAQLI 178 (287)
Q Consensus 110 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 178 (287)
..|....+.+.- ......+..|.++...|+. ++|...|+++-..
T Consensus 326 ~~f~~L~~~s~W-------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESKW-------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhcccc-------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999998876441 0245567789999999999 8888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00021 Score=54.45 Aligned_cols=101 Identities=10% Similarity=-0.075 Sum_probs=86.7
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAIN--------AGDRVD----------SALKDMAVVLKQQDRVDEAVEAIKSFR 80 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~ 80 (287)
..+...-|+-++..|+|.+|...|+.|+. ..|..+ ..+.+++.|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566788889999999999999999873 235442 346688999999999999999999999
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
...|.+. .+++..|......-+.++|..-|.++++++|.
T Consensus 258 ~~~~~nv--KA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNV--KAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 9999998 78888999999889999999999999999884
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0028 Score=46.84 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
...+|..+...|++++|+..++.++....+... .-+-..++.+...+|.+++|+..+...-.-.-
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-------------- 157 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-------------- 157 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--------------
Confidence 446888999999999999999999976555432 23467789999999999999998876443321
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
.+......|.++...|+-++|...|++++...++.+
T Consensus 158 -------------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 158 -------------AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -------------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 244566789999999999999999999999875543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00078 Score=53.85 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+...++..+.+.|-|++|.+..++++++++.+..+. ..+.++...|+++++.++..+--.
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 366677788899999999999999999999999997765 799999999999999998876443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0019 Score=49.45 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QE---SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
...+..-+.+|....++++|...+.++.+-..++. ++ ..+...+.+......+.++..+|+++..++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~-------- 102 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV-------- 102 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------
Confidence 34566678889999999999999999987655442 11 2355667777788899999999999987753
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHH----HHHHHHHhccCHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN---KAC----NLSHCLIKQARYTEA 201 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~----~l~~~~~~~g~~~~A 201 (287)
-...|+....-...+--..+.-++++|++.|++++.+-.... ..+ ..++++.+..++.+|
T Consensus 103 -------------E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 103 -------------ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred -------------HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 223344444444445555678899999999999988544332 222 578889999999999
Q ss_pred HHHHHHHHh
Q 023081 202 RSVLEDVLL 210 (287)
Q Consensus 202 ~~~~~~~l~ 210 (287)
...+.+-..
T Consensus 170 a~a~lKe~~ 178 (308)
T KOG1585|consen 170 ATAFLKEGV 178 (308)
T ss_pred HHHHHHhhh
Confidence 887766443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0056 Score=50.32 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=117.9
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKD------------PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAV 73 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 73 (287)
.++-+.+..+|++.++|..+.......-. .+.-+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45667899999999999988766544322 456678899999999999888888888888888999999
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHH
Q 023081 74 EAIKSFRHLCSKQAQESLDNVLIDLYK---KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 74 ~~~~~~~~~~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.-+++++..+|++. .+|....+... ..-.+......|.+++........-............. .-..
T Consensus 86 ~~we~~l~~~~~~~--~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~--------~~l~ 155 (321)
T PF08424_consen 86 KKWEELLFKNPGSP--ELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEE--------FMLY 155 (321)
T ss_pred HHHHHHHHHCCCCh--HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHH--------HHHH
Confidence 99999999999876 55554433222 23468888999999888644211000000000000000 0356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
++..+.......|..+.|+..++..++.+-..
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNFFR 187 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHcCC
Confidence 67788888899999999999999999976433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00095 Score=59.74 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=79.8
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
...+++.+|+....+.++..|+...+...-|..+.++|+.++|..+++..-...+++. .....+-.+|..++++++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~--~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD--LTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch--HHHHHHHHHHHHHhhhhHHH
Confidence 5578999999999999999999999999999999999999999987777666666554 56777888999999999999
Q ss_pred HHHHHHHhccch
Q 023081 110 ELLKQKLRMIYH 121 (287)
Q Consensus 110 ~~~~~al~~~~~ 121 (287)
.+|++++..+|.
T Consensus 98 ~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 98 HLYERANQKYPS 109 (932)
T ss_pred HHHHHHHhhCCc
Confidence 999999999984
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0014 Score=52.26 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=85.8
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
-|-.-|.-|+...+|..|+..|.+.|+..-.+ +..|.+.|.+....|+|..|+.-..+++..+|.+. ..+..-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhhh
Confidence 34557888999999999999999999875332 55688999999999999999999999999999987 6777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccc
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++....++.+|..+++..+.++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 899999999999999999988765
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0017 Score=54.03 Aligned_cols=153 Identities=17% Similarity=0.071 Sum_probs=96.9
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------------C------------CCC---HHHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------------G------------DRV---DSALKD 58 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------~------------~~~---~~~~~~ 58 (287)
+..++..+|.+.+++..++.++..+|+.+.|.++.++|+-. + +.+ --+.+.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 44567788888888888888888888888888888877611 1 111 123444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 59 MAVVLKQQDRVDEAVEAIKSFRHLCSK-QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 59 la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
....+.+.|-+.-|+++.+-.+.++|. ++. .+...+-....+.++|+--++.++........ .
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~-------------~-- 172 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYR-------------N-- 172 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh-------------h--
Confidence 556667777777777777777777776 542 23333334444566666666655543331000 0
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCc
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNY---------------TSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 182 (287)
.+.. -|..-+..+.++...++- ++|...+++|+...|.-
T Consensus 173 ---~~~~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 173 ---WLSL---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ---hhhh---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 0001 345666777788888877 89999999998866653
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.7e-05 Score=39.01 Aligned_cols=32 Identities=38% Similarity=0.515 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
.+|+.+|.+|...|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46888999999999999999999999998884
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0037 Score=47.91 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC----------cHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE----------TSRILGNLGWAY 159 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~lg~~~ 159 (287)
.+...-|+-++..|+|.+|...|+.++..-.+ +.+...|. ....+.+.+.|+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~------------------L~lkEkP~e~eW~eLdk~~tpLllNy~QC~ 240 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRN------------------LQLKEKPGEPEWLELDKMITPLLLNYCQCL 240 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH------------------HHhccCCCChHHHHHHHhhhHHHHhHHHHH
Confidence 45667788899999999999999998875331 12222222 455788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
...|+|-++++.....+...|++..++ ..|.+....-+..+|..-|..+++.
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999998876 8899998888999999999999987
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=37.70 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
.+++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455566666666666666666666666555
|
... |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00013 Score=60.77 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=86.8
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 103 (287)
.-+...+..++++.|+..|.++|+++|+.+..+.+.+.++.+.+++..|+.-+.++++.+|... ..+...|......+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~--K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI--KAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh--heeeeccHHHHhHH
Confidence 4466678889999999999999999999988899999999999999999999999999999877 67888888888899
Q ss_pred CHHHHHHHHHHHHhccch
Q 023081 104 RLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 104 ~~~~A~~~~~~al~~~~~ 121 (287)
.+.+|...|+......|+
T Consensus 87 ~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHHHHHHhhhcCcC
Confidence 999999999998888775
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00014 Score=60.64 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
.-+.-....+.++.|+..|.++++++|+.+ .++...+..+.+.+++..|+.-+.++++.+|.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---------------- 70 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHDALKAIELDPT---------------- 70 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHHHHhhhhcCch----------------
Confidence 445566677889999999999999999887 56666778888999999999999998888764
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHC 191 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~ 191 (287)
...+++..|.+....+++.+|+..|+......|+++.+. .+..|
T Consensus 71 ----------~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 71 ----------YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred ----------hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 567788889999999999999999999999999998775 44444
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00072 Score=53.87 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A 168 (287)
.-+-.-|+-|++.++|..|+..|.++++..- .+|+ +...|.+.+-+....|+|..|
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc-----------------------~D~dlnavLY~NRAAa~~~l~NyRs~ 138 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKC-----------------------ADPDLNAVLYTNRAAAQLYLGNYRSA 138 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-----------------------CCccHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455678889999999999999999998632 1222 577889999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+....+++..+|.+..++ .=+.|+..+.++.+|..+.+..+..
T Consensus 139 l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 139 LNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999997775 7889999999999999999888765
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=58.22 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRL 105 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 105 (287)
+.-.+..|.++.|++.|..+|.++|.....+...+.++..+++...|+.-+..++.++|+.. .-+-..+......|+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHhhch
Confidence 34456678899999999999999998888888899999999999999999999999988775 3444455566677999
Q ss_pred HHHHHHHHHHHhccc
Q 023081 106 DEQIELLKQKLRMIY 120 (287)
Q Consensus 106 ~~A~~~~~~al~~~~ 120 (287)
++|...+..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998888764
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=58.48 Aligned_cols=120 Identities=18% Similarity=0.118 Sum_probs=82.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh
Q 023081 63 LKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV 142 (287)
Q Consensus 63 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~ 142 (287)
.+..|.++.|++.|..++.++|... .++...+.++.+.+....|+.-+..+++++|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ein~D--------------------- 180 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEINPD--------------------- 180 (377)
T ss_pred HhcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhccCcc---------------------
Confidence 3456778888888888888888766 56667777788888888888887777766653
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
+...+-..|.....+|++.+|...+..+.+++-+...--.+-.+.-..+..++-...+++..+
T Consensus 181 -----sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 181 -----SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred -----cccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 555566678888888889999888888888765543333444444444444444444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.011 Score=49.03 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=99.0
Q ss_pred CCchHHHHhHHhHHh---hCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhc
Q 023081 17 PGDSPYVRAKHVQLV---EKDPEAAIVLFWKAI-NAGDRVDSALKDMAVVLKQQ---------DRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~ 83 (287)
+.....+..|.+... .|+.++|+..+..++ ...+.+++.+..+|.+|... ...++|+..|.++.+..
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 445666778888888 899999999999954 45567788999999888543 24899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKL-RMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
|+. ..+.+++.++.-.|.-.+.....++.. .+... ..++ ....+-.+....-.++.+..-.
T Consensus 257 ~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l--------------lg~k-g~~~~~~dYWd~ATl~Ea~vL~ 318 (374)
T PF13281_consen 257 PDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSL--------------LGRK-GSLEKMQDYWDVATLLEASVLA 318 (374)
T ss_pred ccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHH--------------HHhh-ccccccccHHHHHHHHHHHHHc
Confidence 754 245566666666676444443333322 22110 0000 0011111333445677888889
Q ss_pred CCHHHHHHHHHHHHhhCCCc
Q 023081 163 GNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~ 182 (287)
|++++|.+++++++...|..
T Consensus 319 ~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 319 GDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred CCHHHHHHHHHHHhhcCCcc
Confidence 99999999999999887654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.025 Score=47.80 Aligned_cols=175 Identities=14% Similarity=0.081 Sum_probs=121.5
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINA---GDR-------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDN 93 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~ 93 (287)
+.-+-...|++.+|++....+.+. .|. .+..+..+|......|.++.|...|..+.+... .+.+.-...
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444556789999999988777653 354 245677788888888999999999999988754 334445677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch-hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH-GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
.++..|...|+-+.-.+.++. +.|. ...+.+. .....+++..|...+.++++.+|...+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq-----------------~l~a~~~~v~glfaf~qn~lnEaK~~l 468 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ-----------------RLEASILYVYGLFAFKQNDLNEAKRFL 468 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH-----------------HHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 788899988876554444432 2221 0000000 002556778888999999999999999
Q ss_pred HHHHhhCCCc--hH--HH---HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 173 RKAQLIDPDA--NK--AC---NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 173 ~~al~~~~~~--~~--~~---~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
.+.++..... .. .+ -||.+....|+..++....+-++......++.+
T Consensus 469 ~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 469 RETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 9999876321 11 11 578899999999999999998887764445543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00026 Score=36.37 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.016 Score=39.11 Aligned_cols=102 Identities=16% Similarity=0.063 Sum_probs=68.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+.-....|-|++|...++++++....-+ ...+-++-- | +...+-.|+..+...|+|++++..-..+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP------~eEaFDh~G-F-------DA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIP------AEEAFDHDG-F-------DAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-------TTS---HHH-H-------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCC------hHhhccccc-H-------HHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4445566899999999999988643100 001111100 1 4667778899999999999887777777
Q ss_pred Hh-------hCCCchHHH-----HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 176 QL-------IDPDANKAC-----NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 176 l~-------~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+. ++.+....| +.+.++..+|+.++|+..|+.+-+.
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 64 556655555 6888999999999999999988764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.029 Score=44.42 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..-..-+.-....|++.+|...|..++...|++. .+...++.+|...|+.+.|...+...-..... +
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---------~-- 201 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAALPLQAQD---------K-- 201 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHhCcccchh---------h--
Confidence 4455667778899999999999999999999887 78889999999999999999887753222110 0
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...........+.+.....+. ..+++.+..+|++... +.++..+...|+.++|.+.+-..+...
T Consensus 202 --------------~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 202 --------------AAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred --------------HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 000100111222333333322 2345556779988665 699999999999999999999888774
Q ss_pred cCCCCchhHHHHHHHHHHhcccc
Q 023081 213 LSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
.+..+.....+..+++..++..
T Consensus 267 -~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 267 -RGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred -ccccCcHHHHHHHHHHHhcCCC
Confidence 2334444555666666666643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0005 Score=36.20 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+.+||.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666666666666665443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.002 Score=54.12 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=95.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccchhhhhcCCChhHHHHHHHH
Q 023081 61 VVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKL-RMIYHGEAFNGKPTKTARSHGKK 139 (287)
Q Consensus 61 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~a~~~~~~ 139 (287)
..+.+..+..-+..-.+.++....+.+ .......+.++-.|++.+|.+.+...= ...+
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~--~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~------------------- 272 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSS--MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEA------------------- 272 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCc--HHHHHHHHHHHHhcchHHHHHHHHhccccccc-------------------
Confidence 344444555555554454444444444 466677888888999999998765421 1111
Q ss_pred HhhhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----h----CC----------CchHHHHHHHHHHhccCH
Q 023081 140 FQVTVKQE--TSRILGNLGWAYMQKGNYTSAEVVYRKAQL-----I----DP----------DANKACNLSHCLIKQARY 198 (287)
Q Consensus 140 ~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~----~~----------~~~~~~~l~~~~~~~g~~ 198 (287)
.-.+.|. ....|+++|.++++.|.|.-+..+|++++. + .| .....++.|..|...|++
T Consensus 273 -g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP 351 (696)
T KOG2471|consen 273 -GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP 351 (696)
T ss_pred -CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc
Confidence 0111122 244578999999999999999999999995 1 11 112335899999999999
Q ss_pred HHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 199 TEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 199 ~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
-.|.++|.+++..+..++.-|..+.++
T Consensus 352 l~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 352 LLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999876666666544333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00039 Score=35.66 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+++.+|.++...|++++|...|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888888888888888888888763
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=41.52 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLK 113 (287)
Q Consensus 38 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 113 (287)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++.-......+..++...|.-+.-...++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4556777888888888888888888888888888888888888877654211344445555555565444444343
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00046 Score=36.34 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
++.++|.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888888888888886543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0075 Score=46.28 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhCCC--c----hHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYT-------SAEVVYRKAQLIDPD--A----NKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~~~--~----~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.++..+||+|...|+-+ .|+..|.+++..... . ... +.+|.+..++|++++|..+|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 677889999999999954 555666666553322 1 122 379999999999999999999999874
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.041 Score=48.91 Aligned_cols=161 Identities=16% Similarity=0.050 Sum_probs=111.3
Q ss_pred CCchHHHHhHHhHHhh-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVE-----KDPEAAIVLFWKAINA-----GDRVDSALKDMAVVLKQQD-----RVDEAVEAIKSFRH 81 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~ 81 (287)
.+..+.+.+|.++..- .|.+.|+.+|+.+... ....+.+.+.+|.+|.+.. +...|+.++.++..
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4567778888887653 6899999999988761 1114567888999998854 67889999999887
Q ss_pred hchhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 82 LCSKQAQESLDNVLIDLYKKCG---RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
....+ ....+|.+|..-. ++..|.++|..+.... +..+.+.+|.+
T Consensus 322 ~g~~~----a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----------------------------~~~A~~~la~~ 369 (552)
T KOG1550|consen 322 LGNPD----AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----------------------------HILAIYRLALC 369 (552)
T ss_pred cCCch----HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----------------------------ChHHHHHHHHH
Confidence 75543 5556677766544 5678888888877654 56778888888
Q ss_pred HHHc----CCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHh-ccCHHHHHHHHHHHHhc
Q 023081 159 YMQK----GNYTSAEVVYRKAQLIDPDANK-ACNLSHCLIK-QARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~----g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~-~g~~~~A~~~~~~~l~~ 211 (287)
|..- -+...|..+++++.+.+ .+. .+.++..+.. .++++.+...+....+.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 7643 47789999999998876 322 3344433321 16666666665555544
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.027 Score=38.10 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=73.5
Q ss_pred hHHHHhH--HhHHhhCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-
Q 023081 20 SPYVRAK--HVQLVEKDPEAAIVLFWKAINAGDR------------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS- 84 (287)
Q Consensus 20 ~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 84 (287)
.+|+.|+ .-.+..|-|++|...+++++...-. +.-.+..|+.++..+|+|++++....+++....
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3444444 4456779999999999999876422 244577899999999999999988888876532
Q ss_pred ------h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 85 ------K--QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 85 ------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
+ ..|..+....+..+...|+.++|+..|+.+-++.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 2 2465667778888899999999999999987763
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.02 Score=48.27 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=116.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--------
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-V--DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-------- 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------- 86 (287)
.+..++.+|.....-+.++.|...|..+.+.... + +..-.++|.+|...|+-+.--+.++. +.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHH
Confidence 3456678888888999999999999999876533 2 33455789999998876654444443 34432
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
-...+.+..|...+.++++.||...+++.++... +++..+- ..-.+..+|.+....|+..
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman------------aed~~rL--------~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN------------AEDLNRL--------TACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc------------hhhHHHH--------HHHHHHHHHHHHHHhcchH
Confidence 1224677778888899999999999999998853 2222222 4667788999999999999
Q ss_pred HHHHHHHHHHhhC---CCchH-HH---HHHHHHHhccC--HHHHHHHH
Q 023081 167 SAEVVYRKAQLID---PDANK-AC---NLSHCLIKQAR--YTEARSVL 205 (287)
Q Consensus 167 ~A~~~~~~al~~~---~~~~~-~~---~l~~~~~~~g~--~~~A~~~~ 205 (287)
++.....-++... ||.+. .| -+-.++...|+ .....+.+
T Consensus 503 es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 503 ESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 9999888887654 45533 35 35566777777 44444444
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.09 Score=42.65 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=88.4
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ----DRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK---- 101 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~---- 101 (287)
...+++..|...+..+-... ++.....++.+|... .+..+|..+|+.+.... ++ .....+|.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~--~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LA--EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cH--HHHHhHHHHHhcCCCc
Confidence 34455555555555554421 224455555555433 23555555555333321 11 233344555444
Q ss_pred cCCHHHHHHHHHHHHhccch-h--------hhh-cCC-------ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH---
Q 023081 102 CGRLDEQIELLKQKLRMIYH-G--------EAF-NGK-------PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ--- 161 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~-~--------~~~-~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~--- 161 (287)
..++.+|..+|+++.+.... + ..+ .+. ....+...+.+. ....++.+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a---a~~~~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA---AELGNPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH---HHhcCHHHHHHHHHHHHcCCC
Confidence 23556666666655554221 1 111 120 011222222221 111267888889988865
Q ss_pred -cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhcc---------------CHHHHHHHHHHHHhc
Q 023081 162 -KGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQA---------------RYTEARSVLEDVLLG 211 (287)
Q Consensus 162 -~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~l~~ 211 (287)
..++.+|..+|+++-+... ....+.++ ++...| +...|..++..+...
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 3488999999999988776 33334677 666555 556666666666654
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.12 Score=42.49 Aligned_cols=151 Identities=9% Similarity=-0.052 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHH
Q 023081 40 VLFWKAINAGDRVDSALKDMAVVLKQQDR------------VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDE 107 (287)
Q Consensus 40 ~~~~~al~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 107 (287)
..|++.++.+|.++.+|..+....-..-. .+.-+.+|++|++.+|++. .+...+-.+..+..+.++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHH
Confidence 45778899999999999998865544322 4677789999999999876 666666666677777778
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC----
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ---KGNYTSAEVVYRKAQLIDP---- 180 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~---- 180 (287)
..+.+++++..+|. ++.+|...-..... .-.++.....|.+++..-.
T Consensus 84 l~~~we~~l~~~~~--------------------------~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 84 LAKKWEELLFKNPG--------------------------SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHHHHCCC--------------------------ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence 78888887777654 45555443332222 2345666666666665210
Q ss_pred -------Cch----H---H-HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCc
Q 023081 181 -------DAN----K---A-CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTE 218 (287)
Q Consensus 181 -------~~~----~---~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 218 (287)
..+ . . +.+...+...|..+.|+..++..++.+...+..
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 000 1 1 156777789999999999999999988544444
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.14 Score=42.78 Aligned_cols=144 Identities=12% Similarity=0.029 Sum_probs=98.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----hh---------------------h-hHHHHHHHHHH
Q 023081 45 AINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-----SK---------------------Q-AQESLDNVLID 97 (287)
Q Consensus 45 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~---------------------~-~~~~~~~~l~~ 97 (287)
.+..+|.++.++..++.++..+|+.+.|.+.+++++-.. |. | ....+......
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 357789999999999999999999999999999885321 10 0 11223445566
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
...+.|.+..|.++.+-.+.++|..+ ...+.+.+-....+.++|+--+..++....
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~D------------------------P~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDED------------------------PLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCC------------------------cchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 77788999999999998888877421 123344444445566777766666665544
Q ss_pred hCC-C----c-hHHHHHHHHHHhccCH---------------HHHHHHHHHHHhcc
Q 023081 178 IDP-D----A-NKACNLSHCLIKQARY---------------TEARSVLEDVLLGK 212 (287)
Q Consensus 178 ~~~-~----~-~~~~~l~~~~~~~g~~---------------~~A~~~~~~~l~~~ 212 (287)
... + . .-.+..+.++..+++. +.|...+.+|+...
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 211 1 1 1234677777778877 89999999988764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.014 Score=39.00 Aligned_cols=92 Identities=10% Similarity=0.027 Sum_probs=68.8
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhchhhhHHH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQQDR-----------VDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
.+..++.+|++-+|++..+..+...++.. ..+..-|.++..+.. .-.|++.+.++..+.|..+ .
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A--~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA--H 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH--H
Confidence 46778899999999999999998877664 445556777755532 5678888888888888876 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..+.+|.-+.....|+++..-.++++.+
T Consensus 80 ~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 80 SLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666666655567788888877777765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.15 Score=47.40 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------Cc--h-----------HHH-HHHHHHHhccCHHHH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP------------DA--N-----------KAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------~~--~-----------~~~-~l~~~~~~~g~~~~A 201 (287)
+..-|..++..+...|+|..|....++|-.... .. . +-. .+...|...|-+++-
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 466688899999999999999888877643210 00 0 111 466778888999999
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHH
Q 023081 202 RSVLEDVLLGKLSGSTETKTINRVKEL 228 (287)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (287)
+..++.++.. ...|...+....-+
T Consensus 1299 Isl~Ea~LGL---ERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1299 ISLLEAGLGL---ERAHMGMFTELAIL 1322 (1666)
T ss_pred HHHHHhhhch---hHHHHHHHHHHHHH
Confidence 9999888865 33444444444333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0017 Score=32.58 Aligned_cols=32 Identities=44% Similarity=0.656 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
.++..+|.++...|++++|...++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777888888888888888888888887764
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0046 Score=35.59 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHH
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 187 (287)
+.++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35678999999999999999999999999999977653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.03 Score=40.35 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=66.1
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..++.+..+....++.+++...+.-.--+.|..+.....-|.++...|++.+|+..++.+.+..|..+ ..--.++.++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p--~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP--YAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh--HHHHHHHHHH
Confidence 55666777778888999999988777778899999999999999999999999999999887777665 3344455666
Q ss_pred HHcCCH
Q 023081 100 KKCGRL 105 (287)
Q Consensus 100 ~~~g~~ 105 (287)
...|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 666654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.36 Score=44.18 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=96.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--hHHH--HHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--AQES--LDN 93 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~--~~~ 93 (287)
...|.+....|+++.|+++.+.++..-|.. ..+...+|.+..-.|++++|..+...+.+..... .+.. ...
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 445677777888888888888888765543 3456677788888888888888888777664322 1111 233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
..+.+...+|+. +...-.++...... . -+...|-+.......+.++...-+++.+..-..
T Consensus 542 ~~s~il~~qGq~--~~a~~~~~~~~~~~-------------q-----~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear 601 (894)
T COG2909 542 QQSEILEAQGQV--ARAEQEKAFNLIRE-------------Q-----HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEAR 601 (894)
T ss_pred HHHHHHHHhhHH--HHHHHHHHHHHHHH-------------H-----HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhh
Confidence 345566677722 22222221111000 0 122223333344444444444444666665555
Q ss_pred HHHhhC----CCchH--H--HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 174 KAQLID----PDANK--A--CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 174 ~al~~~----~~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++.. |.... . +.|+.+....|+.++|...+.+.....
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 555432 22211 1 267888888888888888888877765
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.075 Score=44.26 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD----RVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.......+...+.+....|.++.|...+.++...++ ..+.+....+..++..|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567889999999999999999999999887652 2467888899999999999999999988887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0084 Score=51.67 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHH
Q 023081 58 DMAVVL-KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSH 136 (287)
Q Consensus 58 ~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 136 (287)
++|.+| ...|+...|+.++..++...|.... .....++++....|-.-.|-..+.+++.+...
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s--------------- 674 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSS--------------- 674 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---------------
Confidence 455555 4568999999999999988886532 24566788888888888888888888776532
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 137 GKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.|-.++.+|..+....+.+.|++.|++++..+|+++..-
T Consensus 675 -----------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 675 -----------EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred -----------CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhH
Confidence 577788899999999999999999999999999987653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.021 Score=45.41 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=51.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
-++-.++...++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|..-++..++.+|+++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 34556677778888888888888888888887788888888888888888888888888888765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.054 Score=40.29 Aligned_cols=99 Identities=13% Similarity=-0.038 Sum_probs=73.2
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQESLD 92 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~ 92 (287)
.++..+|..|...|+.+.|++.|.++....... .+.+..+..+....|++.....++.++-..... .....+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567789999999999999999999977654322 566778888888999999999998888655321 1122344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..-|..+...++|.+|...|-.+..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 45566677789999999888776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=37.84 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=47.0
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV--DSALKDMAVVLKQQDR 68 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~ 68 (287)
.+...+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++...|.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3456788999999999999999999999999999999999988665 4555555555555554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=33.93 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.++.+|..+.+.|+|++|..+.+.+++..|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 3567778888888888888888888888888765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.038 Score=43.95 Aligned_cols=61 Identities=16% Similarity=-0.003 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++-.+|.+.++++.|+.+.+..+.+.|+++.-+ ..|.+|.++|.+..|..-++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 44455666666666666666666666666665544 56666666666666666666666653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.24 Score=39.94 Aligned_cols=189 Identities=16% Similarity=0.085 Sum_probs=108.9
Q ss_pred chHHHHhHHhHHhhC-CHHHHHHHHHHHHhc----CC------CC----HHHHHHHHHHHHHcCCHH---HHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEK-DPEAAIVLFWKAINA----GD------RV----DSALKDMAVVLKQQDRVD---EAVEAIKSFR 80 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~----~~------~~----~~~~~~la~~~~~~g~~~---~A~~~~~~~~ 80 (287)
...+|..|.....++ +++.|+.+++++.+. .+ +. ..++..++.+|...+..+ +|..+++.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 356788999999999 999999999999876 21 11 345778899999888754 4555555555
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhh----------cCCChhHHHHHHHHH-hhhcCCCc
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAF----------NGKPTKTARSHGKKF-QVTVKQET 148 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~----------~~~~~~~a~~~~~~~-~~~~~~~~ 148 (287)
...|+.+ .++.....+..+.++.+++.+.+.+++...+.. ..+ .......+...+..+ .....|..
T Consensus 115 ~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 115 SEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5566655 444444445555788999999999998865411 110 122222333333221 22223322
Q ss_pred HHHHHHHHHH---HHHc--CC------HHHHHHHHHHHHh--hCCCch--------HHHHHHHHHHhccCHHHHHHHHHH
Q 023081 149 SRILGNLGWA---YMQK--GN------YTSAEVVYRKAQL--IDPDAN--------KACNLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 149 ~~~~~~lg~~---~~~~--g~------~~~A~~~~~~al~--~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~ 207 (287)
.. |.....+ +... ++ .+.....+..... ..|-.. ..|+.|...++.++|++|..+|+-
T Consensus 193 ~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 193 DQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred hH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 11 2222221 2221 22 2222233332111 111111 235789999999999999999997
Q ss_pred HHh
Q 023081 208 VLL 210 (287)
Q Consensus 208 ~l~ 210 (287)
++.
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 763
|
It is also involved in sporulation []. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.094 Score=40.31 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=70.0
Q ss_pred HcCCHHHHHHHHHHHHHhc-----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHH
Q 023081 65 QQDRVDEAVEAIKSFRHLC-----SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKK 139 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~ 139 (287)
....+++|++.|.-++-.. +......++..++-+|...|+.+.....+++|+......-
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~---------------- 152 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAY---------------- 152 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH----------------
Confidence 3456788888777775331 1222336788889999999998877777777777654210
Q ss_pred HhhhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 140 FQVTVKQ----ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 140 ~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
.....| +...+.+.+|.+..+.|++++|..+|.+++......
T Consensus 153 -~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 153 -ENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred -HhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 011111 236688899999999999999999999999865444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.38 Score=41.59 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|...++..-|...|+-.+...++.+... .....+..+|+-..+...|++++..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4567888888888988888888887764 6667778888888888888888876
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0049 Score=30.71 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=14.9
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCC
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGD 50 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 50 (287)
+++.+|.++...++++.|+..|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555544443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.15 Score=42.60 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
|..+...=+...+++++|.-|..-|..++++...|.+...-....+.+...- ...+--.+..||.++++.+-
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~v--------aSfIetklv~CYL~~rkpdl 246 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSV--------ASFIETKLVTCYLRMRKPDL 246 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHH--------HHHHHHHHHHhhhhcCCCch
Confidence 3344455567788899999999999999998765544322111111111111 13344568999999999999
Q ss_pred HHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+..-.+.+.++|.+..- ...+.|+..+.+|.+|...+--+.=.+
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988655 478999999999999988766555444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.23 Score=44.23 Aligned_cols=161 Identities=11% Similarity=0.040 Sum_probs=96.1
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCCHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSAL----------KDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~la~~~~~~g~~~~A~~~ 75 (287)
+|..+.++.+| ++..|-.++...+.+-+++.|...|-+.-. .+.. ..- ...|.+-..-|++++|...
T Consensus 680 edA~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 680 EDAIQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred HHHHHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 45666777888 778999999999988888888887755422 1211 111 1223333334666666665
Q ss_pred HHHHHH-------------------h-------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCC
Q 023081 76 IKSFRH-------------------L-------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGK 128 (287)
Q Consensus 76 ~~~~~~-------------------~-------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~ 128 (287)
|-.+-+ + ..+.....++..+|..+.....|++|.++|.+.-......+.+ ...
T Consensus 757 yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le 836 (1189)
T KOG2041|consen 757 YLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLE 836 (1189)
T ss_pred hhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHH
Confidence 533311 1 0111233567888888888899999999988765543332222 222
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
.++..+...+ .-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 837 ~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 837 LFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 2222222222 2366666777778888788877777776644
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.64 Score=41.50 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHHcC---
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-----DRVDEAVEAIKSFRHL---CSKQAQESLDNVLIDLYKKCG--- 103 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~---~p~~~~~~~~~~l~~~~~~~g--- 103 (287)
...|..+++.+... .+..+...+|.+|..- .+.+.|+.+++.+... .-...+....+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888877654 4567888888888654 5899999999999772 111111145667788887743
Q ss_pred --CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhh
Q 023081 104 --RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG---NYTSAEVVYRKAQLI 178 (287)
Q Consensus 104 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~ 178 (287)
++..|+.+|.++-... ++.+.+.+|.++.... ++..|.++|..|...
T Consensus 306 ~~d~~~A~~~~~~aA~~g----------------------------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG----------------------------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred cccHHHHHHHHHHHHhcC----------------------------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 6778888888887764 4777888999988766 678999999998653
Q ss_pred CCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 212 (287)
.+..+ ++++.||.. .-+...|..++.++.+..
T Consensus 358 --G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 358 --GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred --CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 44444 478888753 347789999999999873
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.27 Score=36.61 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
..++..+|..|.+.|+.++|++.|.++....... ....++..+..+....+++........++-.....+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d------- 108 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD------- 108 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch-------
Confidence 4678899999999999999999999988775422 23367888888999999999999999888766432110
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
.-. ....-..-|..+...++|.+|...|-.+....
T Consensus 109 ----~~~---------~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 ----WER---------RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred ----HHH---------HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 000 12233446777778899999999988776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=31.93 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777763
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0095 Score=51.37 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=83.1
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVD-SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC 102 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 102 (287)
..|......|+...|+.++..|+...|... ....+||.+....|-...|...+.+++.+....+ -..+.+|.+|...
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g~~~l~l 689 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLGNAYLAL 689 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcchhHHHH
Confidence 345555568999999999999999888653 4578999999999999999999999999986556 4677899999999
Q ss_pred CCHHHHHHHHHHHHhccchh
Q 023081 103 GRLDEQIELLKQKLRMIYHG 122 (287)
Q Consensus 103 g~~~~A~~~~~~al~~~~~~ 122 (287)
.+.+.|++.|+.+++..|..
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKC 709 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCC
Confidence 99999999999999998853
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.033 Score=36.66 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=47.3
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
.+.|+|.+|++.+.+.+........- ........++.++|.++...|++++|+..+++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~-----------------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNS-----------------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccc-----------------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 46699999999998888764320000 0000135567889999999999999999999999876
Q ss_pred CCch
Q 023081 180 PDAN 183 (287)
Q Consensus 180 ~~~~ 183 (287)
....
T Consensus 72 re~~ 75 (94)
T PF12862_consen 72 RENG 75 (94)
T ss_pred HHHC
Confidence 5543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=46.45 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=57.9
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
...+.-....|+.++|...|+.|+.++|++++++..+|......++.-+|-.+|-+++.+.|.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 44555567789999999999999999999999999999999999999999999999999999664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.27 Score=35.53 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
.+.+-..-|+++...|+|.+|+..|+.+....|..+..- .++.|+..+|+
T Consensus 43 ~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 43 FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 444455555555555555555555555555444444443 45555555554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0086 Score=45.46 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=53.8
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.....+|.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567899999999999999999999999999999999999999999999999999965
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.43 Score=37.38 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=91.7
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH-H
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD-E 107 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~-~ 107 (287)
.....-..|+.+-+.+|.++|.+-.+|...-.++..++ +..+-++++.+.++-+|++- .+|...-.+....|++. .
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY--QvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY--QVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch--hHHHHHHHHHHHhcCcccc
Confidence 44456677888888888888888777776666665554 57788888888888888876 56665555555556665 4
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
-++....++.. +.++-.+|...-++...-+.++.=+.+..+.++.+-.+..+|
T Consensus 132 ELef~~~~l~~--------------------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 132 ELEFTKLMLDD--------------------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred hHHHHHHHHhc--------------------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 45555555543 333677888888888888888888888888888776665555
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.53 Score=38.16 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=92.9
Q ss_pred chHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 19 DSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
..+.+.++..+.. ..+...|+.+|+.+. ....+.+.+.||..|.. ..+..+|..+|+++....-... ..
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~ 149 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-AL 149 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HH
Confidence 3566777777665 356788888888544 34556788888888876 4488888888888887743321 12
Q ss_pred HHHHHHHHHHHc-----C--CHHHHHHHHHHHHhccc------hhhhh-cCC----ChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 91 LDNVLIDLYKKC-----G--RLDEQIELLKQKLRMIY------HGEAF-NGK----PTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 91 ~~~~l~~~~~~~-----g--~~~~A~~~~~~al~~~~------~~~~~-~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
....++.+|..- - +...|...|.++..... .+..| .|. ....+...+.+ +... .+...+
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~-Aa~~--g~~~a~ 226 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKK-AAEQ--GDGAAC 226 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHHC--CCHHHH
Confidence 355555555543 1 33478888888776543 23333 221 34455555554 2222 237788
Q ss_pred HHHHHHHHHcC---------------CHHHHHHHHHHHHhhC
Q 023081 153 GNLGWAYMQKG---------------NYTSAEVVYRKAQLID 179 (287)
Q Consensus 153 ~~lg~~~~~~g---------------~~~~A~~~~~~al~~~ 179 (287)
+.++ ++...| +...|..++..+....
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 8888 666666 5555555555554433
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.45 Score=37.31 Aligned_cols=149 Identities=8% Similarity=0.011 Sum_probs=110.3
Q ss_pred hHhhcCCCCchHHHHhHHhHH-hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhchhhh
Q 023081 10 HVVHKLPPGDSPYVRAKHVQL-VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVD-EAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~p~~~ 87 (287)
.+|..+|-+...|.+.-.+.. ...+..+-++++.+.+..+|.+-++|...-.+....|++. .-++....++..+.++-
T Consensus 68 d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY 147 (318)
T KOG0530|consen 68 DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY 147 (318)
T ss_pred HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch
Confidence 467889999998877666654 3467888999999999999999999999988888889888 88899999999887765
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-hhhhhcCCC--------------hhHHHHHHHHHhhhcCCCcHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY-HGEAFNGKP--------------TKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
.+|...--+...-+.++.-+.+....++.+. +..+++.+. .+.-..+... .+...|++..+|
T Consensus 148 --HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~-~I~~vP~NeSaW 224 (318)
T KOG0530|consen 148 --HAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD-KILLVPNNESAW 224 (318)
T ss_pred --hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH-HHHhCCCCccHH
Confidence 4555544455556889999999999998765 333443221 1112222232 577888888888
Q ss_pred HHHHHHHHH
Q 023081 153 GNLGWAYMQ 161 (287)
Q Consensus 153 ~~lg~~~~~ 161 (287)
+.|.-++..
T Consensus 225 nYL~G~l~~ 233 (318)
T KOG0530|consen 225 NYLKGLLEL 233 (318)
T ss_pred HHHHHHHHh
Confidence 888777765
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.74 Score=39.70 Aligned_cols=169 Identities=16% Similarity=0.098 Sum_probs=111.0
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
.+.|-+...+..+-.++-....+.-....+.+++...... .++..++.+|... ..++-...+++.++.+-++. ...
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k-mal~el~q~y~en-~n~~l~~lWer~ve~dfnDv--v~~ 135 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK-MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV--VIG 135 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH--HHH
Confidence 3455555555555555555555555666677777776554 7899999999998 56677888999999988877 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccch-------hhhh------cCCChhHHHHHHHHHhhhcCCCcHHHHHHH-HHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYH-------GEAF------NGKPTKTARSHGKKFQVTVKQETSRILGNL-GWA 158 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-g~~ 158 (287)
..++..|.+ ++..++...|.+++...-. ...| .+...+.......+........-..+.+.- -.-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 888887766 9999999999999875421 0111 133333333333332222222233333333 244
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
|....++++|+..++..++.+..+..+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHH
Confidence 5677899999999999999887775543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.78 Score=39.69 Aligned_cols=221 Identities=13% Similarity=0.076 Sum_probs=133.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
....+..|+++...+.-+......|+.+.|+..++..+. +.. .-.++.+|.++.-..+|..|...+........
T Consensus 257 l~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 257 KKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 345677899999999999999999999999999988876 332 23466788999999999999999988877643
Q ss_pred hhhHHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHhc-------cc-----------------------hhh--
Q 023081 85 KQAQESLDNVLI-DLYK--------KCGRLDEQIELLKQKLRM-------IY-----------------------HGE-- 123 (287)
Q Consensus 85 ~~~~~~~~~~l~-~~~~--------~~g~~~~A~~~~~~al~~-------~~-----------------------~~~-- 123 (287)
-.. ..|..++ -++. ..|+-++|...++...++ .| .+.
T Consensus 335 WS~--a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~ 412 (546)
T KOG3783|consen 335 WSH--AFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPY 412 (546)
T ss_pred hhH--HHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchH
Confidence 211 1222222 2222 123444444444333221 11 000
Q ss_pred ---hh--cCC---ChhHHHHHHHHH-hhhc-CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCc----hHH
Q 023081 124 ---AF--NGK---PTKTARSHGKKF-QVTV-KQET-SRILGNLGWAYMQKGNYTSAEVVYRKAQLI---DPDA----NKA 185 (287)
Q Consensus 124 ---~~--~~~---~~~~a~~~~~~~-~~~~-~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~----~~~ 185 (287)
+| +|. ...........+ .-.. ++++ .-.+..+|.++...|+...|..+|+..++. ...+ |.+
T Consensus 413 ~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA 492 (546)
T KOG3783|consen 413 YELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFA 492 (546)
T ss_pred HHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 01 111 111111111100 0111 2222 334667899999999999999999988842 2222 223
Q ss_pred -HHHHHHHHhccC-HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 186 -CNLSHCLIKQAR-YTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 186 -~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+-+|..+..+|. ..++..++.+|-+.....+-..+..-++...+..++
T Consensus 493 ~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~~~r 542 (546)
T KOG3783|consen 493 LYELALLYWDLGGGLKEARALLLKAREYASDYELENRLHMRIQAALHTVR 542 (546)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHh
Confidence 379999999988 999999999999864222222344455555555554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.037 Score=30.42 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=27.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHh
Q 023081 187 NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQE 231 (287)
Q Consensus 187 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 231 (287)
+|+.+|..+|+.+.|...+++++.. .+......+..++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~-----~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE-----GDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhc
Confidence 6788888888888888888888853 223333566666654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.023 Score=30.63 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.++.++|.+|...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556666666666666666666666554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.1 Score=40.55 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHHHHcCCH
Q 023081 35 PEAAIVLFWKAINAG-DR---VDSALKDMAVVLK-QQDRVDEAVEAIKSFRHLCSKQ----AQESLDNVLIDLYKKCGRL 105 (287)
Q Consensus 35 ~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~ 105 (287)
...|+.+++-+++.. +. .+.++..+|.++. ...++++|..++++++.+...+ ........++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 566888888777422 11 1567888999887 7889999999999998876432 1234566778888888877
Q ss_pred HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCc-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhC--C
Q 023081 106 DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET-SRILGNL--GWAYMQKGNYTSAEVVYRKAQLID--P 180 (287)
Q Consensus 106 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~--~ 180 (287)
. |...+++.++.... .+.. ....+.+ ...+...+++..|++.++...... +
T Consensus 117 ~-a~~~l~~~I~~~~~-----------------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSET-----------------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred H-HHHHHHHHHHHHhc-----------------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 7 99999998876431 0001 1111222 222333389999999999988766 3
Q ss_pred CchHHH-----HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 181 DANKAC-----NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 181 ~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.++... ..+.+....+..+++++..+++..
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 444332 345666777878888888887754
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.27 Score=46.77 Aligned_cols=182 Identities=12% Similarity=0.019 Sum_probs=127.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHH------HHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIV------LFWKAI-NAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC------- 83 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~------~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------- 83 (287)
...-....|+.....|.+.+|.+ ++.... ...|.....+..++.++.+.|++++|+.+-.++.-+.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34455778888888889988888 444322 2347778889999999999999999999887775432
Q ss_pred -hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 84 -SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 84 -p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
|+.. ..+..++...+..+....|...+.++..+.... --...|....+..+++.++...
T Consensus 1011 s~~t~--~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls------------------~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1011 SPNTK--LAYGNLALYEFAVKNLSGALKSLNRALKLKLLS------------------SGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred CHHHH--HHhhHHHHHHHhccCccchhhhHHHHHHhhccc------------------cCCCCCchhhhhhHHHHHHhhH
Confidence 2223 346666767777778888888888777653210 0123455667778899999999
Q ss_pred CCHHHHHHHHHHHHhhCCC-----c-hHH--H-HHHHHHHhccCHHHHHHHHHHHHhcc--cCCCCch
Q 023081 163 GNYTSAEVVYRKAQLIDPD-----A-NKA--C-NLSHCLIKQARYTEARSVLEDVLLGK--LSGSTET 219 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~-----~-~~~--~-~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~ 219 (287)
++++.|+.+.+.|++.... . ... + .+++....++++..|....+.....+ ..++++.
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hs 1138 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHS 1138 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcc
Confidence 9999999999999985432 2 111 1 57777888888888877777666655 2344443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.62 Score=38.78 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-----
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----- 123 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 123 (287)
.....+...+.+....|+++.|...+.++....+... ...+....+.+.-..|+..+|+..++..+.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3456788899999999999999999999988653110 115666778888999999999999998888322111
Q ss_pred -h-hcCCC-h--hHH-HHHHHHHhhhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCchHHH-HHHH
Q 023081 124 -A-FNGKP-T--KTA-RSHGKKFQVTVKQETSRILGNLGWAYMQK------GNYTSAEVVYRKAQLIDPDANKAC-NLSH 190 (287)
Q Consensus 124 -~-~~~~~-~--~~a-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~-~l~~ 190 (287)
. ..... . ... ..... .........++..+|...... +..+++...|+++++.+|.....| .+|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLD---KESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHHhhccccccccccccchh---hhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 00000 0 000 00000 000011356778888888888 899999999999999999987776 5666
Q ss_pred HHH
Q 023081 191 CLI 193 (287)
Q Consensus 191 ~~~ 193 (287)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.43 Score=42.97 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A 168 (287)
.+-.+++-|...|+++.|.++|.++=.....-+.| ....+.++-.....+ ..|+ ....+...+.-+-+.|+|.+|
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhh
Confidence 46667888888999999999887764433322333 122333333332221 2233 234455555555566666554
Q ss_pred -------------HHHHHHH------Hh----hCCCc-hHH-HHHHHHHHhccCHHHHHHHHHHH
Q 023081 169 -------------EVVYRKA------QL----IDPDA-NKA-CNLSHCLIKQARYTEARSVLEDV 208 (287)
Q Consensus 169 -------------~~~~~~a------l~----~~~~~-~~~-~~l~~~~~~~g~~~~A~~~~~~~ 208 (287)
++.|++. +. ..|+. ... ..+|.-+...|+.++|...|-++
T Consensus 844 eqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 844 EQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 4444432 11 12222 111 15677777778887777666543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.081 Score=44.90 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=85.1
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHH
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 108 (287)
.+..||.-.|-+....++...|..+......+.++...|+|+.|...+..+-..-.... .....+-......|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHHHHHhhhchhhHHHH
Confidence 35578888888888888888888888888888999999999998887765543322111 1222333344566888888
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
.......+...-. ++++...-+......|-+++|..++++.+.++|..
T Consensus 377 ~s~a~~~l~~eie--------------------------~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIE--------------------------DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccC--------------------------ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8877766553221 34444444455556677788888888888777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.18 Score=35.79 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=56.1
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
............++++++...+...--+.|+.+.....-|.++...|++.+|+.+++...+..+..+ ..--.++.++.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p--~~kAL~A~CL~ 89 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP--YGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch--HHHHHHHHHHH
Confidence 3444455556677888888888776677788888888888888888888888888888777665544 22233444555
Q ss_pred HcCC
Q 023081 101 KCGR 104 (287)
Q Consensus 101 ~~g~ 104 (287)
..|+
T Consensus 90 al~D 93 (153)
T TIGR02561 90 AKGD 93 (153)
T ss_pred hcCC
Confidence 4454
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.15 Score=44.84 Aligned_cols=97 Identities=8% Similarity=0.071 Sum_probs=76.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
+.+.+-|.-.+...+|..++++|...+..-|.+ ......++.||....+.+.|.++++++-+.+|.++.. ..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~--q~ 432 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC--QL 432 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH--HH
Confidence 345666777788899999999999999876654 4556789999999999999999999999999987733 33
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.+-.+....|.-++|+.+..+....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3344555668889999888776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.1 Score=42.17 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch----hh-h-
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH----GE-A- 124 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~-~- 124 (287)
+.+.+|..+|.+..+.|...+|++.|-++ +++ ..+....+...+.|.|++-+.++..+.+.... +. .
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp--s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~ 1174 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP--SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIF 1174 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHH
Confidence 34688999999999999999999998764 233 35556667778889999999998887765331 11 0
Q ss_pred -h-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHH
Q 023081 125 -F-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 125 -~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A 201 (287)
| ......+.+++ -..|+.+. ....|.-.+..|.|+.|.-.|... .-| .|+..+..+|+|+.|
T Consensus 1175 AyAkt~rl~elE~f------i~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEF------IAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHHhchHHHHHHH------hcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHH
Confidence 1 01111111211 12343333 445788888889998887777543 123 788999999999999
Q ss_pred HHHHHHHHhc
Q 023081 202 RSVLEDVLLG 211 (287)
Q Consensus 202 ~~~~~~~l~~ 211 (287)
...-+++-+.
T Consensus 1240 VD~aRKAns~ 1249 (1666)
T KOG0985|consen 1240 VDAARKANST 1249 (1666)
T ss_pred HHHhhhccch
Confidence 9988887655
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.024 Score=43.18 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=51.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
...+.++.+.|.+.|.+++++.|. ....|+.+|....+.|+++.|...|.+.++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~--------------------------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE--------------------------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch--------------------------hhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 345668888888888888877664 788899999999999999999999999999
Q ss_pred hCCCch
Q 023081 178 IDPDAN 183 (287)
Q Consensus 178 ~~~~~~ 183 (287)
++|.+.
T Consensus 58 ldp~D~ 63 (287)
T COG4976 58 LDPEDH 63 (287)
T ss_pred CCcccc
Confidence 999874
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.59 Score=34.30 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=26.4
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
+.+..++|+..|..+-+-.-.....-.....+.+..+.|+...|+..|..+-.-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344555566555554433222111123344455555666666666666655443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.16 Score=43.30 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHH
Q 023081 71 EAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.-...|+.+....+.+. .+|........+.+.+.+-...|.+++...| +++.
T Consensus 89 rIv~lyr~at~rf~~D~--~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp--------------------------~~~d 140 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDV--KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP--------------------------NNPD 140 (568)
T ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------------------------CCch
Confidence 34456666666666555 5666655555555556666666766555544 4788
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHH
Q 023081 151 ILGNLGWAYMQKGN-YTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 151 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 186 (287)
+|..-|...+..+. .+.|...|.+++..+|+.+..|
T Consensus 141 LWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 141 LWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 88777777666665 7888888888888888887665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1 Score=36.30 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=98.1
Q ss_pred HHhhCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchh------------hh
Q 023081 29 QLVEKDPEAAIVLFWKAINAG----DRV----DSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSK------------QA 87 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~----~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~------------~~ 87 (287)
.+.+|+.+.|..++.++-... |+. ....++.|......+ +++.|..+++++.+..+. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999886543 332 456778888888889 999999999999887311 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
...+...++.+|...+.++...++. .+++. .....|+.+.++...-.+....++.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~-~~l~~----------------------l~~e~~~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKAL-NALRL----------------------LESEYGNKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHH-HHHHH----------------------HHHhCCCCcHHHHHHHHHHhccCChhH
Confidence 2346778888888888765443322 22221 112234455555444444445788888
Q ss_pred HHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.+.+.+++..-+-....+ +...-+.. .....|...+...+...
T Consensus 140 ~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 140 YEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHH
Confidence 8888888887543221112 11111222 23456666666666554
|
It is also involved in sporulation []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.5 Score=42.60 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=11.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~a 175 (287)
-...|.+.|+|.+|...-.+.
T Consensus 797 ai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh
Confidence 344555666666665554443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.46 Score=31.94 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=55.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 59 MAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCG----RLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 59 la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
+|.-++..|++-+|+++.+.++..++++. | -+....|.++.... +.+-=..++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~s----------------- 63 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGS----------------- 63 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHh-----------------
Confidence 46778899999999999999999887653 2 24455555543322 111111111111
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
.+.+.+ +..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 64 -ve~~s~-a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 64 -VECFSR-AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHHHH-HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 111111 33444445556666666555555566666666665543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.4 Score=37.55 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.++.+|+|.++.-+-.=..++.| ++.++..+|.++....+|.+|..++...
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP---------------------------S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP---------------------------SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC---------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34556666666665555444544 7999999999999999999999999864
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.4 Score=34.12 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
..+..+...-...++.+++...+..+.-+.|+.+ .+...-|.++...|+|.+|+..|+...+..+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK--ELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc--ccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3445555555668999999999999999999887 6777778899999999999999998776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.1 Score=38.79 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=107.4
Q ss_pred chHHHHhHHhHH-hhCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh---hhH
Q 023081 19 DSPYVRAKHVQL-VEKDPEAAIVLFWKAINAGDR--V----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK---QAQ 88 (287)
Q Consensus 19 ~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~ 88 (287)
...++.+|.+++ ...+++.|..++++++.+... . ..+...++.++.+.+... |...+++.++.... ..|
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 456788999987 678999999999999876633 2 234556788888888777 99999999887543 334
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHH
Q 023081 89 ESLDNVL-IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 89 ~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~ 166 (287)
......+ ...+...+++..|++.++........ ..+|. ...+....+.++...+..+
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~---------------------~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ---------------------RGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh---------------------cCCHHHHHHHHHHHHHHHhcCCCch
Confidence 3343333 44444448999999999988776320 00000 1223344567777888888
Q ss_pred HHHHHHHHHHhhCC------Cc--h--HHH-HH--HHHHHhccCHHHHHHHHHH
Q 023081 167 SAEVVYRKAQLIDP------DA--N--KAC-NL--SHCLIKQARYTEARSVLED 207 (287)
Q Consensus 167 ~A~~~~~~al~~~~------~~--~--~~~-~l--~~~~~~~g~~~~A~~~~~~ 207 (287)
++++..+++..... +. + .++ .+ -.+....|+++.+...+++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888754221 11 1 122 22 2244667777666665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.37 Score=41.25 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 023081 37 AAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR-LDEQIELLKQK 115 (287)
Q Consensus 37 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a 115 (287)
.-...|+.+....+.++..|........+.+.+.+-..+|.+++..+|+++ .+|..-+.-.+.-+. .+.|...|.++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 345678888888888888898888888888889999999999999999888 777777766666565 88889999999
Q ss_pred Hhccchhhhh
Q 023081 116 LRMIYHGEAF 125 (287)
Q Consensus 116 l~~~~~~~~~ 125 (287)
+..+|+.+..
T Consensus 167 LR~npdsp~L 176 (568)
T KOG2396|consen 167 LRFNPDSPKL 176 (568)
T ss_pred hhcCCCChHH
Confidence 9998865544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.11 Score=41.57 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
..+.-..+.|+.++|..+|+.++++.|. ++.++..+|......++.-+|-.+|-
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~--------------------------~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPT--------------------------NPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCC--------------------------CHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 3444456678888888888887777654 89999999999999999999999999
Q ss_pred HHHhhCCCchHHH
Q 023081 174 KAQLIDPDANKAC 186 (287)
Q Consensus 174 ~al~~~~~~~~~~ 186 (287)
+++.++|.+..+.
T Consensus 175 ~ALtisP~nseAL 187 (472)
T KOG3824|consen 175 KALTISPGNSEAL 187 (472)
T ss_pred eeeeeCCCchHHH
Confidence 9999999886553
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.2 Score=36.19 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=56.1
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-------------
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS------------- 84 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------------- 84 (287)
...+-+.+-+..+...+...-++.-..+++++|..+.++..+|.-- .--..+|...++++++...
T Consensus 183 ~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 183 FLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQS 260 (556)
T ss_pred ccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 3344445555556666666666666667777776666666655422 1223444444444433211
Q ss_pred ----------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 85 ----------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 85 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+....+-..++.+..++|+..+|++.++...+-.|.
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 0011223455666777777777777777776666553
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=27.03 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVV--YRKAQLIDPD 181 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~~~ 181 (287)
+.++.+|..+..+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577788889999999999999 4466666654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.9 Score=36.68 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------------hHHH---HHHHHHHhccCHHHHHHHHHHHH
Q 023081 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-------------NKAC---NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~---~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
|..+.+....|...++.+++++|++.+......-.+. ...+ ..+.++..+|++.+++.++++.+
T Consensus 76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 76 GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3455666666777777777777777665544321110 1111 35677777777777777777776
Q ss_pred hcc
Q 023081 210 LGK 212 (287)
Q Consensus 210 ~~~ 212 (287)
..-
T Consensus 156 ~~l 158 (549)
T PF07079_consen 156 ERL 158 (549)
T ss_pred HHH
Confidence 654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.24 Score=30.90 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..-|.-++...+..+|+..++++++..++.+..+ .+..++...|++.+.+.+--.-+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667799999999999999999988877665 6788899999999999887666554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.044 Score=26.22 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777776654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.56 Score=32.77 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 53 DSALKDMAVVLKQQD---RVDEAVEAIKSFRH-LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 53 ~~~~~~la~~~~~~g---~~~~A~~~~~~~~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+..+++|+++.... +..+.+.+++..+. -.|... -+..+.++..+.+.++|++++.+.+..++..|+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r-Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR-RECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc-hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 467778888887664 45677788888876 344322 145666777778888888888888888887764
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.8 Score=37.93 Aligned_cols=145 Identities=18% Similarity=0.081 Sum_probs=77.6
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc-----CC----------------CCHHH---HHHHHHHHHHcC
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA-----GD----------------RVDSA---LKDMAVVLKQQD 67 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~----------------~~~~~---~~~la~~~~~~g 67 (287)
+...|.+.+.++.++.+...+||.+.|..+.++++=. .| .+-.. ++..-..+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4455777777788888888888877777777666511 11 11111 111222334557
Q ss_pred CHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcC
Q 023081 68 RVDEAVEAIKSFRHLCSK-QAQESLDNVLIDLY-KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVK 145 (287)
Q Consensus 68 ~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 145 (287)
-+.-|.++.+-.+.++|. ++. ....+.++| .+..+|+=-++.++..-..+ .+..-
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl--~~l~~ID~~ALrareYqwiI~~~~~~e~~n---------------------~l~~~ 413 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPL--GILYLIDIYALRAREYQWIIELSNEPENMN---------------------KLSQL 413 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCch--hHHHHHHHHHHHHHhHHHHHHHHHHHHhhc---------------------cHhhc
Confidence 777777777777777775 552 222233333 34445554444444332221 12233
Q ss_pred CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Q 023081 146 QETSRILGNLGWAYMQKGN---YTSAEVVYRKAQLIDP 180 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~ 180 (287)
|+-+. -..++..|..... -..|+..+.+|+...|
T Consensus 414 PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 414 PNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 33222 2335555665555 5677778888877666
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.24 Score=32.48 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=35.7
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
.+..||+..|++.+.+.+..... ...+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45567777777776666543211 134556677777777777777777777776644
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.25 Score=47.02 Aligned_cols=146 Identities=14% Similarity=0.014 Sum_probs=107.0
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--- 82 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 82 (287)
..|+....|..++.++...+++++|+..-.++.-.. |+....+.+++...+..++...|+..+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 467788889999999999999999999987775332 556778889999999999999999999988765
Q ss_pred --chhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 83 --CSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 83 --~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
.|+++. ......+..++...++++.|+++.+.|.+.... + .....-.....+..++.++
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~---v---------------~g~~~l~~~~~~~~~a~l~ 1109 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK---V---------------LGPKELETALSYHALARLF 1109 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh---h---------------cCccchhhhhHHHHHHHHH
Confidence 222221 134566777777889999999999999885431 0 0001111455667778888
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 023081 160 MQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~ 177 (287)
...+++..|+...+....
T Consensus 1110 ~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1110 ESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhHHHHHHHHHHhhHHH
Confidence 888888888777776654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.058 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~ 76 (287)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444444444443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.7 Score=36.68 Aligned_cols=148 Identities=9% Similarity=-0.001 Sum_probs=98.5
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
-+-|+.+|.+.++|+.+-+.+..+ -+++....|++.+...|..+.+|...........+++.-...|.+++..--+-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-- 86 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-- 86 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH--
Confidence 457889999999999998887776 89999999999999999999999999999999999999999999987653332
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH--------
Q 023081 89 ESLDNVL-IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY-------- 159 (287)
Q Consensus 89 ~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~-------- 159 (287)
.+|... ..+-...|+...+....-++....-. .+..++.+..+|...+..+
T Consensus 87 -DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~-------------------kig~di~s~siW~eYi~FL~~vea~gk 146 (656)
T KOG1914|consen 87 -DLWKLYLSYVRETKGKLFGYREKMVQAYDFALE-------------------KIGMDIKSYSIWDEYINFLEGVEAVGK 146 (656)
T ss_pred -hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHH-------------------HhccCcccchhHHHHHHHHHccccccc
Confidence 233222 11223344444444444444333111 2223344444555444433
Q ss_pred -HHcCCHHHHHHHHHHHHhhC
Q 023081 160 -MQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 160 -~~~g~~~~A~~~~~~al~~~ 179 (287)
..+.+.+.-...|++++...
T Consensus 147 ~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 147 YEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 23346667778888888643
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.15 Score=43.40 Aligned_cols=113 Identities=12% Similarity=-0.048 Sum_probs=83.0
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+.+.++.+.|.++......+.++...|+|+.+...+..+-..-.....+...+-......|++++|.....-.+.-.-+
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC
Confidence 35678899999999999999999999999999999886654433333355566666777889999998888777654333
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
++ ++...-+......|-++++.-.+++.+.++|
T Consensus 390 ~~--ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 390 DE--EVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred Ch--hheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 33 2333333333455788999999999999877
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.39 Score=33.54 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=57.0
Q ss_pred CchHHHHhHHhHHhhC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 18 GDSPYVRAKHVQLVEK---DPEAAIVLFWKAIN-AGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.....++++.+..... +..+.+..++..++ ..|. .-+..+.||..+++.++|++|+.+.+..++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3456678888877654 56778999999986 4443 356788999999999999999999999999999886
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.45 E-value=2 Score=34.26 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHH------------------
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDR--------VDSALKDMAVVLKQQDRVDEAVEAI------------------ 76 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~------------------ 76 (287)
..+++-....+++++|+..|.+.+..+-. .-.+...++.+|...|++..--+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 56778888899999999999999876311 2356778899999988754333222
Q ss_pred -HHHHHhchh---h---h---------H----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 77 -KSFRHLCSK---Q---A---------Q----------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 77 -~~~~~~~p~---~---~---------~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
+..++..|. + . | ..+-..++.++.+.|.|.+|+......+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK---------- 156 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELK---------- 156 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----------
Confidence 222222221 0 0 0 01222345566666677666666554443211
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHH-H--HHHHHHHhccCHHHHH
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID-----PDANKA-C--NLSHCLIKQARYTEAR 202 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~-~--~l~~~~~~~g~~~~A~ 202 (287)
...-.|+-..++..-..+|....+..++...+..|-... |....+ . .-|.....-.+|.-|.
T Consensus 157 ----------k~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~ 226 (421)
T COG5159 157 ----------KYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTAS 226 (421)
T ss_pred ----------hhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHH
Confidence 122233345555555666666666666555554443221 111111 1 1244445566677777
Q ss_pred HHHHHHHhcccCCCCch
Q 023081 203 SVLEDVLLGKLSGSTET 219 (287)
Q Consensus 203 ~~~~~~l~~~~~~~~~~ 219 (287)
.+|-++++.......+.
T Consensus 227 SYF~Ea~Egft~l~~d~ 243 (421)
T COG5159 227 SYFIEALEGFTLLKMDV 243 (421)
T ss_pred HHHHHHHhccccccchH
Confidence 77777777654444444
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.79 Score=40.59 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
-+.-.++..+|..++++|...+...+... .+.........++.||....+.+.|.+++++
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~--------------------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~E 419 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDN--------------------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQE 419 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchh--------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455777889999999998888776311 0111255677899999999999999999999
Q ss_pred HHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 175 AQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 175 al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|-+.+|.++-.- .+..+....|.-++|+..........
T Consensus 420 AE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 420 AEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999886553 56667777888999999888776653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.75 Score=34.65 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=61.1
Q ss_pred hHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--hHHHHHHHHHHHHHHcCC
Q 023081 28 VQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--AQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~l~~~~~~~g~ 104 (287)
.++.+-.-+.|...|-++-... -++++..+.||..|. ..+.++++..+.+++++.+.+ .-..+...++.+|...|+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3466645677888886654332 245778888888776 678999999999999986533 222788899999999999
Q ss_pred HHHHHH
Q 023081 105 LDEQIE 110 (287)
Q Consensus 105 ~~~A~~ 110 (287)
++.|.-
T Consensus 194 ~e~AYi 199 (203)
T PF11207_consen 194 YEQAYI 199 (203)
T ss_pred hhhhhh
Confidence 998853
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.5 Score=32.28 Aligned_cols=130 Identities=16% Similarity=0.077 Sum_probs=71.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDL 98 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~ 98 (287)
|..+.-.-..+..++|+..|...-+.+-. ..-+....|.+..+.|+...|+..|..+-.-.|--. .-.....-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 33444445567777777777665554422 244566777788888888888888887765544211 11122233444
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+...|-|+.-....+.. +...+|--..+.-.||..-++.|++.+|..+|.+...
T Consensus 142 LvD~gsy~dV~srvepL-------------------------a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPL-------------------------AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhc-------------------------cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44555554443322211 2222333445555566666666666666666666554
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=27.47 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
.++..||.+-...++|++|+.-|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456778888888889999988888888753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.29 Score=42.17 Aligned_cols=103 Identities=14% Similarity=-0.025 Sum_probs=82.0
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ---DRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
...+-+..-|.-.+..+....|+..|.+++...|.....+.+.|.++.+. |+.-.|+.-.-.+++++|... .++.
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~--kah~ 449 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ--KAHF 449 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH--HHHH
Confidence 33444455555556667788999999999999999988888988888776 466667777777788888765 7888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.++.++...+++.+|+++...+....|.
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 8999999999999999998888877773
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.15 Score=27.00 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=16.3
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhc
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINA 48 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 48 (287)
.+..+|.+.+..++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666666666655543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.38 Score=37.95 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
-..+...++++.|....++.+..+|.++.-+.-.|.+|.+.|.+.-|++-++..++..|+.+
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 34455666777777777777777777766677777777777777777777777777776654
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.29 Score=25.53 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~ 75 (287)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.31 Score=26.79 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+.+|.+|...|+.+.|.+.+++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 45677777777777777777777643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.21 Score=40.06 Aligned_cols=81 Identities=9% Similarity=-0.014 Sum_probs=70.5
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKD-MAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+++.....|+++..|..-+......+-+.+--..|.+++...|.+++.|.. -+.-+...++++.+...|.++++.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3455667789999999888888888899999999999999999999998886 566778889999999999999999998
Q ss_pred hh
Q 023081 86 QA 87 (287)
Q Consensus 86 ~~ 87 (287)
.+
T Consensus 175 ~p 176 (435)
T COG5191 175 SP 176 (435)
T ss_pred Cc
Confidence 76
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.9 Score=32.77 Aligned_cols=59 Identities=7% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQ-QDRVDEAVEAIKSFR 80 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~ 80 (287)
+..++++....++|++.+.+..+++..++.. .+-...++.+|.. .|....+...+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 5678888888999999999999988887654 3445556666632 344444444444433
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.39 E-value=6.7 Score=36.46 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=98.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh---HHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA---QESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~ 93 (287)
-.+.+...+..+...|..++|+.+.-.| .+|.. .....+.+.-+...++..- +...+..-|... ...+..
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvl 419 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVL 419 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHH
Confidence 3566777777778888888888765332 22322 2223334444555555443 333333334321 003444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+-......++.+|..+..++...-+..+.. .+.. .....-..|.+....|++++|++..
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l------------------~ae~~aL~a~val~~~~~e~a~~la 481 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDL------------------LAEFQALRAQVALNRGDPEEAEDLA 481 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhH------------------HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45556667789999999888876654421100 0000 1233334566677778888888888
Q ss_pred HHHHhhCCCchHH------HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 173 RKAQLIDPDANKA------CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 173 ~~al~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.++..-|..... ..+|.+..-.|++++|..+..++.+.
T Consensus 482 r~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 482 RLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 8887766654211 16777777788888888777776665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.6 Score=37.32 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..++..++..+...|+++.++..+++.+..+|-+- ..+..+...|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E--~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDE--PAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45677789999999999999999999999999765 68888899999999999999999987664
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.26 E-value=4.3 Score=34.17 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=90.9
Q ss_pred hHHHH-hHHhHH-hhCCHHHHHHHHHHHHhcC----CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch----
Q 023081 20 SPYVR-AKHVQL-VEKDPEAAIVLFWKAINAG----DR-----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---- 84 (287)
Q Consensus 20 ~~~~~-lg~~~~-~~~~~~~A~~~~~~al~~~----~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---- 84 (287)
++|.+ ++.+++ .++++.+|...-...+..- -. .+..|+.+..+|...|+...-...+...+....
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 44433 333333 3578888887766654321 11 144577778888888886666555555544321
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
......+.+.+-..|...+.|+.|-....+.. .|. ...+.+.+..++.+|.+..-+++
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe--------------------~~snne~ARY~yY~GrIkaiqld 262 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPE--------------------AASNNEWARYLYYLGRIKAIQLD 262 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccc--------------------ccccHHHHHHHHHHhhHHHhhcc
Confidence 12233467777778888888888877665543 121 01111246678889999999999
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 023081 165 YTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~ 182 (287)
|..|.++|-+|+...|.+
T Consensus 263 YssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 263 YSSALEYFLQALRKAPQH 280 (493)
T ss_pred hhHHHHHHHHHHHhCcch
Confidence 999999999999999975
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.49 Score=35.61 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=48.0
Q ss_pred hhcCC--CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 023081 12 VHKLP--PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR----VDSALKDMAVVLKQQDRVDEAV 73 (287)
Q Consensus 12 l~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~ 73 (287)
++..| ++++..+.+|-.|. +.|.++++.++-+++++.+. +++++..|+.++...|+++.|-
T Consensus 132 ~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 132 LEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44455 35566666766655 67999999999999987633 4899999999999999999874
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.23 E-value=4.6 Score=34.98 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=23.8
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 76 (287)
+....+++++++....+.. ++-|.. ..-...++..+.+.|..+.|+...
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc
Confidence 4456678888877766421 222322 234556677777778777777643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.3 Score=40.28 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=65.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHH----HcCC---HHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYK----KCGR---LDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~----~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
..++.....|++|+..|++.....|.... .++....|.... ..|+ +++|+..|+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 543 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFS------------------ 543 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHH------------------
Confidence 35666677788888888888887774320 022333333322 2222 333333333
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.+...|.-|--|...|.+|.+.|++++=++.|.-+++..|++|..
T Consensus 544 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 544 ---------YLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred ---------HhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 344445556668888999999999999999999999999988755
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.21 Score=25.65 Aligned_cols=25 Identities=48% Similarity=0.663 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
..+..+...|.+.|+.++|.+.|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4677777788888888888887765
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.77 Score=38.55 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=55.8
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAG--------DR-----V-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~--------~~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
..++.+++|..|..-|..++++- |. + ..+-..|..||...++.+-|+...-+.+.++|...
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f- 262 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF- 262 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh-
Confidence 34455566666666666555432 11 1 12234689999999999999999999999999765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELL 112 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~ 112 (287)
.-....+.++....+|.+|...+
T Consensus 263 -rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 -RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333455666777777776643
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.4 Score=27.64 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..-|.-++...+.++|+..++++++..++.. .+.+...+..+|...|+|.+++++-.+-+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677778888888888887755432 2245566677778888888887765554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.4 Score=34.77 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHHHHcC
Q 023081 34 DPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ----ESLDNVLIDLYKKCG 103 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g 103 (287)
.....++++.+|+...... ......+|..|...|++++|+.+|+.+........| ..+...+..++...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445667777776543221 344557899999999999999999999665543322 245666778888889
Q ss_pred CHHHHHHHHHHHH
Q 023081 104 RLDEQIELLKQKL 116 (287)
Q Consensus 104 ~~~~A~~~~~~al 116 (287)
+.+..+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 8888877655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.98 Score=36.13 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=56.9
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|+++-..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345567788888999999999999999999999999999999999999999999999998664
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.72 Score=37.00 Aligned_cols=62 Identities=21% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 38 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
|..+|.+|+.+.|.....+..+|.++...|+.-.|+-+|-+++......+ .+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~--~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP--SARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888875432222 344555555444
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.56 E-value=4.4 Score=32.20 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=102.8
Q ss_pred hhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHHHHc
Q 023081 31 VEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QESLDNVLIDLYKKC 102 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~ 102 (287)
...++++|+..|++++++.+.. ..++..+..+++++|++++-.+.|.+.+..-...+ .....+.+-+.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3458999999999999988765 34567788899999999999999988876532110 000111111111122
Q ss_pred CCHHHHHHHHHHHHhcc---chhhhhc------CCC------hhHHHHHHHHHh----hhc-------CCCcHHHHHHHH
Q 023081 103 GRLDEQIELLKQKLRMI---YHGEAFN------GKP------TKTARSHGKKFQ----VTV-------KQETSRILGNLG 156 (287)
Q Consensus 103 g~~~~A~~~~~~al~~~---~~~~~~~------~~~------~~~a~~~~~~~~----~~~-------~~~~~~~~~~lg 156 (287)
.+.+--...|+..+..- .+...|. |+. +......++.+. ... ...-.+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 33333333343333321 1111111 111 111111111110 000 011234555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-------HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-------NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|..+.+-.+-...|.+++.+...-|... .=|..+.+.|++++|..-|-++.+.+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 678888888888888999988765543332 12455678899999998888888876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.49 Score=24.23 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
+..+|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 567788888888888888888888875
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.3 Score=35.40 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
..+...+..|...|.+.+|.++.++++..+|-+...+ .+..++..+|+.-.+...|++..+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667788999999999999999999999998887 788999999999999888876553
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=5.5 Score=31.64 Aligned_cols=70 Identities=17% Similarity=0.055 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+..++=..+...++++.|..+.++.+.++|. ++.-+.-.|.+|.+.|.+.-|+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~--------------------------dp~eirDrGliY~ql~c~~vAl 235 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPE--------------------------DPYEIRDRGLIYAQLGCYHVAL 235 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC--------------------------ChhhccCcHHHHHhcCCchhhH
Confidence 44445555666677777777777766655543 5666666777788888888888
Q ss_pred HHHHHHHhhCCCchHH
Q 023081 170 VVYRKAQLIDPDANKA 185 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~ 185 (287)
+.+...+...|+.+..
T Consensus 236 ~dl~~~~~~~P~~~~a 251 (269)
T COG2912 236 EDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHhCCCchHH
Confidence 8777777777777654
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.74 E-value=6.5 Score=32.33 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=93.8
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAIN----AG--DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQESL 91 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~----~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 91 (287)
..+...|...++|.+|+......+. .+ +.-++++..-..+|+...+..+|...+..+... .|......+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 3566778888999999888776653 22 223566667778888889999988888777543 343332334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhh----hh-----------cCCChhHHHHHHH-HHhhhcCCCcHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----AF-----------NGKPTKTARSHGK-KFQVTVKQETSRILGNL 155 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~-----------~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l 155 (287)
-..-|-++....+|..|..+|-++++-+.... +. .-...++....+. +.++.....+..++-..
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 44456677777899999999999988654211 00 0011111111111 11334444455566666
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHhhCC
Q 023081 156 GWAYMQ--KGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 156 g~~~~~--~g~~~~A~~~~~~al~~~~ 180 (287)
+..+.+ ..+|+.|+..|+.-+..+|
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 665543 3466666666666554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.72 E-value=9 Score=33.92 Aligned_cols=165 Identities=11% Similarity=0.058 Sum_probs=105.9
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDNVLIDL 98 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~l~~~ 98 (287)
..|..-.......|+++...-.|++++---......|...+......|+.+-|-..+.++.+..- ..+ .+...-+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~--~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP--IIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc--HHHHHHHHH
Confidence 44555556667889999999999998876667779999999999999999999988888877643 334 344455556
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhh---------hcCCChhHHHHHHHHH-hhhcCCC----cHHHHHHHHHHH-HHcC
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEA---------FNGKPTKTARSHGKKF-QVTVKQE----TSRILGNLGWAY-MQKG 163 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~a~~~~~~~-~~~~~~~----~~~~~~~lg~~~-~~~g 163 (287)
-...|++..|...+++...-.|.-.. +.......+..+...+ ....... ....+...++.. .-.+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 66778999999999999887763111 1011122222111111 1111111 133334444433 3456
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
+.+.|...+.+++...|++-..+
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~ 478 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLY 478 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHH
Confidence 77788888888888877775554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.1 Score=25.14 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
+..+|+.+-..+.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45667778888888888888888888887643
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.59 E-value=9.3 Score=33.84 Aligned_cols=132 Identities=13% Similarity=-0.007 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 33 KDPEAAIVLFWKAINAGDRVDSALKD--MAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 33 ~~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
+...-++..+...+..+|..+..+.. +...+...+....+.-.+...+..+|++. .....++......|....+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHH
Confidence 44444666666666777777665333 47777788888888889999999999887 667777766666666655555
Q ss_pred HHHH-HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 111 LLKQ-KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 111 ~~~~-al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.+.. +....|.... .+. +...++.+|......|+..++.....++....|.++...
T Consensus 123 ~~~~~a~~~~~~~~~-----------~~~---------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 123 DISEIAEWLSPDNAE-----------FLG---------HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHHHHhcCcchHH-----------HHh---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 4444 4444442100 000 122233368888888888888888888888888875543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.39 E-value=5.4 Score=31.72 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhchhhh-H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 67 DRVDEAVEAIKSFRHLCSKQA-Q-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 67 g~~~~A~~~~~~~~~~~p~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.+.++|+..|++++++.+... | +.+.-.+..+++..|+|++.++.|.+.+....
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk 96 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK 96 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 479999999999999987432 1 23566778899999999999999999887654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.36 E-value=8.6 Score=33.02 Aligned_cols=66 Identities=5% Similarity=0.003 Sum_probs=37.0
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
.+.-.|-.+..|+.-.......+|-+.|+...++++...|. ....++.+|....+-+....+|+++
T Consensus 294 ~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 294 ILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHH
Confidence 33444555556655555555566666666666555554443 4556666666555555555555444
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.25 E-value=8.2 Score=34.17 Aligned_cols=107 Identities=14% Similarity=0.028 Sum_probs=77.1
Q ss_pred CCCCchHHHH--hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhchhhhH---
Q 023081 15 LPPGDSPYVR--AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKS-FRHLCSKQAQ--- 88 (287)
Q Consensus 15 ~p~~~~~~~~--lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~p~~~~--- 88 (287)
+|.+++.+.. +.......++...+.-.+...+..+|....+..+|+.+....|....+...+.. +....|++..
T Consensus 61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 4444444322 344455567777888888899999999999999999999888877777766665 6677776641
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 89 -ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 89 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
...++.++......|+..++....+++....|.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 011222677888888899999888888888774
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.22 E-value=8.3 Score=32.56 Aligned_cols=103 Identities=10% Similarity=-0.034 Sum_probs=75.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hchhhhHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-----DR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRH--LCSKQAQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~ 90 (287)
+..|+++..++...|+...-...+...+... .. .......|-..|...+.|+.|-....++.- ...++-|..
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 4567888888888888666555555444321 22 234455677888889999999888877642 122345668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..+.+|.+..-+++|..|.++|.+++...|.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 8889999999999999999999999999985
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.4 Score=35.57 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=67.9
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH--HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC--NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
....|+++..|...+..-...|-+.+--..|.+++..+|.+.+.| .-+.=+...++++.+..+|.+++..++..+.-|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 445577899999888888888899999999999999999998888 355666788999999999999999876666666
Q ss_pred hHHHHH
Q 023081 220 KTINRV 225 (287)
Q Consensus 220 ~~~~~~ 225 (287)
-.|-+.
T Consensus 180 ~eyfr~ 185 (435)
T COG5191 180 IEYFRM 185 (435)
T ss_pred HHHHHH
Confidence 444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.55 E-value=2.5 Score=32.38 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=54.3
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHH
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLID 97 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~ 97 (287)
..+..+..++|+...+.-++..|.+......+-.++.-.|++++|...++-+-++.|+.. ...+|..+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 346677888999999888899999888888888888899999999999988888888653 2234444433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.8 Score=37.56 Aligned_cols=89 Identities=12% Similarity=-0.043 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh
Q 023081 67 DRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG---RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT 143 (287)
Q Consensus 67 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~ 143 (287)
+....|+..|.+++...|... .++...+.++.+.+ +.-.|+.-...++ .
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~--~~l~nraa~lmkRkW~~d~~~AlrDch~Al--------------------------r 439 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAI--YLLENRAAALMKRKWRGDSYLALRDCHVAL--------------------------R 439 (758)
T ss_pred HHHHHHHHHHHHHhhhccchh--HHHHhHHHHHHhhhccccHHHHHHhHHhhc--------------------------c
Confidence 456778888888888888765 45555555555443 3333444444444 4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++|-...+|+.|+.++...+++.+|+.....+....|.+.
T Consensus 440 ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 440 LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 4444778899999999999999999999988877777553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.08 E-value=5.1 Score=28.27 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=37.1
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIK 77 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (287)
+...+.+...+.+++..+..++.++..+..+..+|... +..+.++++.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34457899999999999988887777888888888765 4556666666
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.94 E-value=3.2 Score=37.13 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+.+++-.|..+.+..+|++|-+.|.+|
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 455666677777777777777666654
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.75 E-value=10 Score=31.20 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh----hhh--cCCChh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG----EAF--NGKPTK 131 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~--~~~~~~ 131 (287)
.+-..-++..+..+-++....+++++|+-+ .++..++.- ...-..+|.++|+++++..... ... .+...+
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA--~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECA--TAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhh--hHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 333444556667777788888899999866 566666542 3345678888899888864310 000 000000
Q ss_pred HHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH---HHHHHHHhccCHHHH
Q 023081 132 TARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC---NLSHCLIKQARYTEA 201 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~l~~~~~~~g~~~~A 201 (287)
.. ...+.+ -..+-..++.|..++|+..+|.+.++...+..|-..... ||..++..+.-|.+.
T Consensus 265 ---a~-----~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 265 ---AQ-----LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred ---hh-----hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001111 133456789999999999999999999877666332221 566665555444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.70 E-value=6.4 Score=35.72 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------HHhchhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSF----------------------RHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL 111 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~----------------------~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 111 (287)
.++.++|..+.....+++|.++|... ...-|++. .+.-.+|+++...|.-++|.+.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s--~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDS--ELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCccc--chHHHHHHHHHhhchHHHHHHH
Confidence 44555555555555555555555433 22234443 4566778888888888888876
Q ss_pred HHH
Q 023081 112 LKQ 114 (287)
Q Consensus 112 ~~~ 114 (287)
|-+
T Consensus 875 ~Lr 877 (1189)
T KOG2041|consen 875 YLR 877 (1189)
T ss_pred HHh
Confidence 654
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.65 E-value=9.5 Score=30.73 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
...++..+|..|.+.++.+.+.++..+.+...-. ....-+-...-..+|.+|..+.-.++
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s--------------------tg~KiDv~l~kiRlg~~y~d~~vV~e 173 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS--------------------TGLKIDVFLCKIRLGLIYGDRKVVEE 173 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------------------cccchhhHHHHHHHHHhhccHHHHHH
Confidence 3468999999999999999999999888765321 11111112234567777777777788
Q ss_pred HHHHHHHHHhhCCCchHH--H--HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q 023081 168 AEVVYRKAQLIDPDANKA--C--NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKE 227 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~--~--~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (287)
.++..+..++...+-... + ..|.-.....++.+|...+...+... .+...-+|.++..
T Consensus 174 ~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF--~S~El~sY~~~vr 235 (412)
T COG5187 174 SLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF--ESSELISYSRAVR 235 (412)
T ss_pred HHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc--cccccccHHHHHH
Confidence 888888888776665332 2 56777777888999999998888763 4444444555443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.39 E-value=12 Score=31.61 Aligned_cols=78 Identities=8% Similarity=0.019 Sum_probs=58.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHh------------hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLV------------EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR--VDEAVEA 75 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~ 75 (287)
.+++.+|+....|...-.++.. ..-.++-+.+...++..+|+.-.+|+....++.+.+. +..=+..
T Consensus 54 ~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~l 133 (421)
T KOG0529|consen 54 ELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQL 133 (421)
T ss_pred HHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3667788777777554433322 2245666778888899999999999999999988774 6788889
Q ss_pred HHHHHHhchhhh
Q 023081 76 IKSFRHLCSKQA 87 (287)
Q Consensus 76 ~~~~~~~~p~~~ 87 (287)
.+++++.+|.+.
T Consensus 134 cek~L~~D~RNf 145 (421)
T KOG0529|consen 134 CEKALKQDPRNF 145 (421)
T ss_pred HHHHHhcCcccc
Confidence 999999999764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.74 Score=22.46 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
++.+...|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45566666777777777777766554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.2 Score=23.84 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
..|..+-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45555666666666666666666666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.78 E-value=15 Score=31.90 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=52.4
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
...++..+..+|-++.|+..- .++...+.||. +.|+++.|.+..++. ++. ..|..+|.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl---~lg~L~~A~~~a~~~-----~~~--~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELAL---QLGNLDIALEIAKEL-----DDP--EKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHH---HCT-HHHHHHHCCCC-----STH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHH---hcCCHHHHHHHHHhc-----CcH--HHHHHHHHHHHH
Confidence 445566667777777776653 33456666654 678888887755432 233 578888888888
Q ss_pred cCCHHHHHHHHHHHHhccc
Q 023081 102 CGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~ 120 (287)
+|+++-|.++|+++-....
T Consensus 360 ~g~~~lAe~c~~k~~d~~~ 378 (443)
T PF04053_consen 360 QGNIELAEECYQKAKDFSG 378 (443)
T ss_dssp TTBHHHHHHHHHHCT-HHH
T ss_pred cCCHHHHHHHHHhhcCccc
Confidence 8999988888887765543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.5 Score=21.47 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMA 60 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la 60 (287)
+++.|...|++++...|..+..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.42 E-value=3.2 Score=33.29 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
......+..|...|.+.+|+++.++++.++|-+. ..+..+..++...|+--.+++.|++.-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e--~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE--QDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 3455667888999999999999999999999654 46666777778889988888877766543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.33 E-value=18 Score=32.18 Aligned_cols=124 Identities=9% Similarity=0.009 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
...|..........|+++...-.|++++--..... .+|...+......|+.+-|...+..+.++.-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~--efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------------ 362 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD--EFWIKYARWMESSGDVSLANNVLARACKIHV------------ 362 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH--HHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------------
Confidence 44566677777888999999999999976555444 6777777777777988888888887776532
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARS 203 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~ 203 (287)
|..+.+...-+..-...|++..|...+++..+.-|+...+ ..-......+|+.+.+..
T Consensus 363 -------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 363 -------------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred -------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 3356666777777778889999999999888877776554 345556667777777763
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.94 Score=22.04 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
|..+-..|.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566667777777777777766544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.2 Score=37.76 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=42.2
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAG---------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
..+.+++...|||..|++.++. +..+ +-....++.+|.+|..+++|.+|+..|...+-.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788999999888743 2332 223566788888888888888888888877543
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.95 E-value=14 Score=30.51 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
-..++.+|...++|.+|+......+.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLR 156 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33567778888888888887666554
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=87.66 E-value=4.4 Score=38.48 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=66.7
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQ----D---RVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
....+++..+.|+.|+..|++.-...|.. -++.+.+|.++... | .+++|+..|++... .|..+ --+.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~ 556 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAP--LEYL 556 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc--hHHH
Confidence 34466777888999999999988888765 46777777776543 2 36666666666533 23323 1244
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
-.+.+|...|++++-++++.-+++.+|
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 556688899999999999999999877
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.55 E-value=20 Score=31.87 Aligned_cols=156 Identities=13% Similarity=0.027 Sum_probs=97.1
Q ss_pred hCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ch----------
Q 023081 32 EKDPEAAIVLFWKAINA------------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CS---------- 84 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p---------- 84 (287)
...|++|...|.-+... .|.++..+..++.++..+|+.+-|....++++=. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45577788877776643 3667889999999999999988888888777522 12
Q ss_pred ------hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 85 ------KQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 85 ------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
.+- ..-+.......+.+.|.+..|.++.+-.+.++|.. +|.+...+..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e-------------------------DPl~~l~~ID 385 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE-------------------------DPLGILYLID 385 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC-------------------------CchhHHHHHH
Confidence 111 01112223344567799999999999888887731 3333333333
Q ss_pred HH-HHcCCHHHHHHHHHHH-----HhhCCCchHHHHHHHHHHhccC---HHHHHHHHHHHHhcc
Q 023081 158 AY-MQKGNYTSAEVVYRKA-----QLIDPDANKACNLSHCLIKQAR---YTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~-~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~ 212 (287)
.| .+..+|.=-+..++.. +..-|+..-...++..|..... ...|...+.+|+...
T Consensus 386 ~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 386 IYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 32 3445555555555544 3344555444467777766665 466777777777654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.7 Score=21.63 Aligned_cols=28 Identities=43% Similarity=0.557 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.++.+...|.+.|++++|.+.|.++.+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566777888889999999988887653
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=87.19 E-value=16 Score=30.22 Aligned_cols=148 Identities=15% Similarity=0.040 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------------------HHHHHHHHHHHHHhchhhhH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR--------------------------VDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------------------------~~~A~~~~~~~~~~~p~~~~ 88 (287)
-++|+.+-+-...+-|..++++-.++....+..+ .+++...+.+++......++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 3567777777777888888888877777665432 45566666666544321111
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 89 ESLDNVLIDLYKK-----CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 89 ~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
.+.-.++.++.. .-+|..-..+|+....+.| +|.+-.|.+.......
T Consensus 292 -qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap---------------------------SPvV~LNRAVAla~~~ 343 (415)
T COG4941 292 -QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP---------------------------SPVVTLNRAVALAMRE 343 (415)
T ss_pred -HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC---------------------------CCeEeehHHHHHHHhh
Confidence 122223333222 2244444455554444444 4555666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCc---hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 164 NYTSAEVVYRKAQLIDPDA---NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~---~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
-...++...+..... |.- ..++ --|..+.++|+.++|...|++++..
T Consensus 344 Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 344 GPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666666666554432 221 1122 4677788888888888888888876
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=87.14 E-value=4.4 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
..++.. +..+.|.+...++.+|.++...|+.-.|+-+|-+++......+.+. +|...+.+
T Consensus 2 ~~~Y~~-A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 2 ERYYRK-AIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHH-HHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 445555 7778888888888888888888888888888888876544445444 77766665
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.01 E-value=16 Score=30.05 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++...+..|++.|+-+.|.+.+++..+..- .+...-+-......+|..|....-..+.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktv--------------------s~g~kiDVvf~~iRlglfy~D~~lV~~~i 164 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTV--------------------SLGHKIDVVFYKIRLGLFYLDHDLVTESI 164 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh--------------------hcccchhhHHHHHHHHHhhccHHHHHHHH
Confidence 6788899999999999999999988776532 12222223445567788887776667777
Q ss_pred HHHHHHHhhCCCchHH--H--HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPDANKA--C--NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~--~--~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+-.+..++...+-..- + .-|.-.....++.+|...|-..+...
T Consensus 165 ekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 165 EKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 7777777666554322 2 56777778889999999999888764
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=86.59 E-value=2.5 Score=30.13 Aligned_cols=47 Identities=19% Similarity=0.060 Sum_probs=22.0
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ 66 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 66 (287)
+..+..++..+..|++.-|..+...++..+|++..+....+.++.+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555444443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=86.45 E-value=15 Score=29.32 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------hhCCCchHHH--HHHHHHHhccCHHHHHHHHHHH
Q 023081 147 ETSRILGNLGWAYMQKGNYTSAEVVYRKAQ----------------LIDPDANKAC--NLSHCLIKQARYTEARSVLEDV 208 (287)
Q Consensus 147 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 208 (287)
.++..+..+|..+++.|++.+|..+|-..- .-.|.....+ ....-|..+++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 379999999999999999999988873211 1223333333 3344456678888888777665
Q ss_pred Hhc
Q 023081 209 LLG 211 (287)
Q Consensus 209 l~~ 211 (287)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
; PDB: 3LKU_E 2WPV_G. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=85.87 E-value=2 Score=36.41 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=67.7
Q ss_pred HhhcCCCCchHHHHhHHhH--HhhCCHHHHHHHHHHHH-------hcCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQ--LVEKDPEAAIVLFWKAI-------NAGDRV------DSALKDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al-------~~~~~~------~~~~~~la~~~~~~g~~~~A~~~ 75 (287)
+.+.+|+..+.+-.+...+ ..+.+..+-++..+... ..++.. --+...|..++.-.|+|..|++.
T Consensus 65 l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~ 144 (404)
T PF10255_consen 65 LKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKV 144 (404)
T ss_pred HHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHH
Confidence 3344476666665554443 33445555444444321 011111 12344677888999999999998
Q ss_pred HHHHHHhchh-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 76 IKSFRHLCSK-------QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 76 ~~~~~~~~p~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
++.. +++.. .....+++.+|-+|...++|.+|++.|...+-...
T Consensus 145 l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 145 LENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred hhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8654 11111 12336788999999999999999999999887544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.77 E-value=22 Score=30.68 Aligned_cols=76 Identities=9% Similarity=-0.002 Sum_probs=47.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 41 LFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 41 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
-++.-|+.+|++...|+.|..-+..+|.+++-.+.+++...-.|--+ .+|.....--....++.....+|-+++..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~--~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME--HAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc--HHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 45566777787777788887777777777777777777776666333 23332222222235666666666666654
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=85.73 E-value=9.8 Score=26.50 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhC--CCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 167 SAEVVYRKAQLID--PDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 167 ~A~~~~~~al~~~--~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
.+.+.|+.+.... ...+..+ ..|..+...|++++|..+|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 5555555554432 2233333 55666666666666666665543
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=85.23 E-value=2.4 Score=21.01 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
|+.+-..|.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666666777777776666554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.90 E-value=56 Score=34.51 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hh-hcCC
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EA-FNGK 128 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~-~~~~ 128 (287)
...+.|...|.+.+..|+++.|..++-.+.+..+. .+....|...-..|+-..|+..+++.++.+..+ .. +...
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc----hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 34788999999999999999999999999887754 577788889999999999999999999765321 00 0000
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCchH-HHHHHHHH------------H
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY--TSAEVVYRKAQLIDPDANK-ACNLSHCL------------I 193 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~-~~~l~~~~------------~ 193 (287)
....-... ...+...++......|++ .+-+++|+.+.+..|.... .+.+|.-| .
T Consensus 1744 p~~~n~~i-----------~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E 1812 (2382)
T KOG0890|consen 1744 PQSVNLLI-----------FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKME 1812 (2382)
T ss_pred chhhhhhh-----------hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccc
Confidence 00000000 123344455555555554 4567888999998885433 23444322 2
Q ss_pred hccCHHH---HHHHHHHHHhc
Q 023081 194 KQARYTE---ARSVLEDVLLG 211 (287)
Q Consensus 194 ~~g~~~~---A~~~~~~~l~~ 211 (287)
+.|++.. ++..|.+++..
T Consensus 1813 ~~g~~~~~l~~~~~~~~sl~y 1833 (2382)
T KOG0890|consen 1813 KSGRVLSLLKAIYFFGRALYY 1833 (2382)
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 3455555 55556667654
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=84.28 E-value=5.7 Score=31.39 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=46.6
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGD--R----VDSALKDMAVVLKQQDRVDEAVEAIKSFR 80 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 80 (287)
....+|..|+..|++++|+++|+.+....- . ...+...+..|+...|+.+..+.+.-+++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 346799999999999999999999865432 1 14566678889999999998887765554
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=83.62 E-value=7.5 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhc
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINA 48 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 48 (287)
+..+|...+..+++-.++-.|++|+..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 455677777777777777777777653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=83.60 E-value=3.7 Score=20.36 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
.+..+...+.+.|+++.|..+|+.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466677778888888888888887665
|
|
| >KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.48 E-value=23 Score=29.00 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=64.5
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhh--
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR--------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQA-- 87 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~-- 87 (287)
.....+|.+|...++|..|...+ .++..+.. ....+..+|.+|...++..+|..+..++-=. +..+.
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 34577999999999999999887 44444421 1345778999999999999999998887322 22222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
....-...+.+.-..+++-+|...|.+...
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333345555566777777666655443
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.88 E-value=9.9 Score=35.11 Aligned_cols=106 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.+.+.+..+..+.--...+.-+.-+.-++.-+.+++.....+..|-.+++..|++++-...-..+.++.|..++...-..
T Consensus 75 ~~~sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl 154 (881)
T KOG0128|consen 75 LESSSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWL 154 (881)
T ss_pred CCccCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34455555555544445555666677777777888888888889999999999988877777777777776552222111
Q ss_pred HHHHH-HHcCCHHHHHHHHHHHHhccc
Q 023081 95 LIDLY-KKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 95 l~~~~-~~~g~~~~A~~~~~~al~~~~ 120 (287)
...++ ...++..++...|++++.-+.
T Consensus 155 ~d~~~mt~s~~~~~v~~~~ekal~dy~ 181 (881)
T KOG0128|consen 155 KDELSMTQSEERKEVEELFEKALGDYN 181 (881)
T ss_pred HHHHhhccCcchhHHHHHHHHHhcccc
Confidence 11222 233778888889999887654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=82.22 E-value=4.3 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666666666666666666544
|
|
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=82.13 E-value=30 Score=29.22 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
..-+|+..++.++...|.+......+..+|...|-.+.|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3445666666666666666666666666666666666666666544
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=81.90 E-value=8.9 Score=26.67 Aligned_cols=59 Identities=15% Similarity=0.038 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
|.....|...+... ++..++|.-+....-......++...|..+...|++.+|.++|+.
T Consensus 66 ~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 66 PRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44455666666543 335666776665544333336788889999999999999998874
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.75 E-value=6.6 Score=30.23 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=51.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..-+.+.+...+|+...+.-++..|.+. .....+-++++-.|+|++|...++-+-.+.|.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda--~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDA--GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccc--cchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3456778899999999999999999876 56777788899999999999999998888774
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.69 E-value=14 Score=31.55 Aligned_cols=97 Identities=12% Similarity=0.013 Sum_probs=63.2
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG-----------DRVDSALKDMAVVLKQQDR----------VDEAVEAIKSFR 80 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~ 80 (287)
++..|++.+....|++|+.++-.|-+.. .+.+-.-..+.+||+...+ ...|...|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 4556778888889999988876654332 2333344456788888765 344444444442
Q ss_pred Hh------------chhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 81 HL------------CSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 81 ~~------------~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.. .|..+ +..+....|.+.+.+|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 21 22222 3345667789999999999999999988764
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.37 E-value=32 Score=29.26 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.++..+|.-|...|+++.|+..|-++...+.... ..+++..+..+-...|+|..-..+..++...- .+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~-~~---------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP-DA---------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc-hh----------
Confidence 3455677777777777777777777665544221 11345555555556677766666655554431 00
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.... +... .+.+...-|.+....++|..|..+|-.+..
T Consensus 220 ~~~~----~q~v---~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 220 NENL----AQEV---PAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hhhH----HHhc---CcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0000 0001 244556667777778899999998876643
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.82 E-value=19 Score=37.63 Aligned_cols=103 Identities=7% Similarity=0.074 Sum_probs=75.1
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-hh---------
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-SK--------- 85 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~--------- 85 (287)
...++.|...|++....|.++.|-..+-.|.+.. -+.+....|..++..|+...|+..+++.++.+ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 3457889999999999999999999998888766 56789999999999999999999999999663 22
Q ss_pred -hh----HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhccc
Q 023081 86 -QA----QESLDNVLIDLYKKCGRL--DEQIELLKQKLRMIY 120 (287)
Q Consensus 86 -~~----~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~ 120 (287)
.. ...+...++......++. ..-+..|+.+.++.|
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 10 001122233333344442 345567888888777
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.51 E-value=7.3 Score=29.39 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
.++.+...|+. ..+..++.++...|+.++|.....++....|
T Consensus 134 a~~~l~~~P~~-~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 134 AERLLRRRPDP-NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33333334422 4455555555555555555555555555555
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.21 E-value=30 Score=28.02 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=92.7
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHHHHH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINA----G--DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQESLDN 93 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~ 93 (287)
+...++..|.|.+|+......+.. + +.-..++..-..+|....+..++...+..+... +|......+-.
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 455677889999998887665532 2 444667777788888888888888877766543 45443334444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhh----hh-------cCC----ChhHHHHHHHH-Hhhh-cCCCcHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGE----AF-------NGK----PTKTARSHGKK-FQVT-VKQETSRILGNLG 156 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~-------~~~----~~~~a~~~~~~-~~~~-~~~~~~~~~~~lg 156 (287)
.-|-+++...+|..|..+|-++++-+..+. +. ..+ ..++....++. ..+. .+.....++...+
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~ava 290 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVA 290 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHH
Confidence 456677788899999999999988654211 10 000 01111111110 0111 2223455566666
Q ss_pred HHHHH--cCCHHHHHHHHHHHHhhCC
Q 023081 157 WAYMQ--KGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 157 ~~~~~--~g~~~~A~~~~~~al~~~~ 180 (287)
..+.. ..+|..|+..|..-+..+|
T Consensus 291 ea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 291 EAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 66543 4577888888877665444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 287 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 8e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 28/180 (15%), Positives = 52/180 (28%), Gaps = 38/180 (21%)
Query: 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH---LCSKQAQES 90
D A A+ + + + A A + + D+A +SFR + A E
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA---QESFRQALSIKPDSA-EI 78
Query: 91 LDNVLIDLYKKCGRLDEQIELLKQKLR-MIY--HGEAFNGKPTKTARSHGKKFQVTVKQE 147
+N L + R E + + L Y A
Sbjct: 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL--------------------- 117
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLE 206
N G ++G + AE +++ P A L+ + + +A +
Sbjct: 118 ------NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ S I L YM+ +Y A A DP A + +A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
A +++ A + A K++A ++ +A K ++ + L
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLR 117
+K L + + +
Sbjct: 187 L----GWKIAKALGNAQAAYEYEAQ 207
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 20/193 (10%)
Query: 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86
H VE + + A+ ++ A + + + + A + +
Sbjct: 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Query: 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK--------TARSHGK 138
+ V + + + G + L I K
Sbjct: 193 P-FVMHEVGV-VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250
Query: 139 KFQ---------VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNL 188
K+ + + + + +G+ + GN+ +A + A + D + L
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310
Query: 189 SHCLIKQARYTEA 201
HC+ +EA
Sbjct: 311 GHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 25/191 (13%), Positives = 39/191 (20%), Gaps = 46/191 (24%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
E A KA A + D+A+ A + +
Sbjct: 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG--CHLPM 162
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
+ Q L + P
Sbjct: 163 LYIGLEYGLT----NNSKLAERFFSQALSI---------APED----------------- 192
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA----------CNLSHCLIKQARY 198
++ +G Q G + +AE + A NL H K +Y
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 199 TEARSVLEDVL 209
EA L
Sbjct: 253 AEALDYHRQAL 263
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
QE ++ +L + ++ + DP L++ + E
Sbjct: 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANEL 75
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 17/158 (10%), Positives = 40/158 (25%), Gaps = 14/158 (8%)
Query: 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114
+ +A + A L I + + +E L +
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA-SCLPV-HIGTLVELNKANELFYLSHK 81
Query: 115 KLRM-----IYH---GEAFN--GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164
+ + + G + G + AR + K T+++ G ++ +
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK-ATTLEKTYGPAWIAYGHSFAVESE 140
Query: 165 YTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ A Y A + + + A
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-11
Identities = 24/169 (14%), Positives = 42/169 (24%), Gaps = 29/169 (17%)
Query: 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93
D ++ A+ + A +A A++ L E++
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP-EAVAR 62
Query: 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153
L + R E LL+Q E I
Sbjct: 63 -LGRVRWTQQRHAEAAVLLQQASDA--------------------------APEHPGIAL 95
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
LG A G +A Y +A + P+ L + + +
Sbjct: 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 16/139 (11%), Positives = 32/139 (23%), Gaps = 30/139 (21%)
Query: 74 EAIKSFRHLCSKQAQ--ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131
+ R + Q + L D G +++ L
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLM-LADAELGMGDTTAGEMAVQRGLA-------------- 51
Query: 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSH 190
+ + LG + + A V+ ++A P+ L H
Sbjct: 52 ------------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99
Query: 191 CLIKQARYTEARSVLEDVL 209
L + A +
Sbjct: 100 ALEDAGQAEAAAAAYTRAH 118
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-10
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
D EAA + L ++ + Q R+D + A E+
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA-EAYS 71
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRMI-YHGEAFNGKPTKTARSHGKKFQVTVKQETSRI 151
N L ++YK+ G+L E IE + LR+ + +
Sbjct: 72 N-LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI------------------------- 105
Query: 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
NL A + G+ A Y A +PD +L + L R EA
Sbjct: 106 --NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 15/180 (8%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ AI + A+ ++A L ++ AV+A S
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-CVRS 139
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRM------IYH--GEAFN--GKPTKTARSHGKKFQV 142
+ L +L K GRL+E + + + G FN G+ A H +K V
Sbjct: 140 D-LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL-AIHHFEKA-V 196
Query: 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
T+ NLG + + A Y +A + P+ NL+ +Q A
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 3e-09
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 33/172 (19%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ--ES 90
+ + + AI + A ++ V K++ ++ EA I+ +RH + +
Sbjct: 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA---IEHYRHALRLKPDFIDG 103
Query: 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSR 150
N L G ++ ++ L+ P
Sbjct: 104 YIN-LAAALVAAGDMEGAVQAYVSALQY---------NP-DLYCVRS------------- 139
Query: 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+LG G A+ Y KA P+ A NL Q A
Sbjct: 140 ---DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 9e-09
Identities = 38/174 (21%), Positives = 60/174 (34%), Gaps = 37/174 (21%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
+ AI F KA+ A ++ VLK+ D AV A+ L A
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS----LSPNHA- 237
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
N L +Y + G +D I+ ++ A +P ++
Sbjct: 238 VVHGN-LACVYYEQGLIDLAIDTYRR---------AIELQP-HFPDAYC----------- 275
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
NL A +KG+ AE Y A + P + NL++ +Q EA
Sbjct: 276 -----NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 37/168 (22%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
+ AI + +AI A ++A LK++ V EA + A++ LC A
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR----LCPTHA- 305
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
+SL+N L ++ ++ G ++E + L ++ L + P E
Sbjct: 306 DSLNN-LANIKREQGNIEEAVRLYRKALEV---------FP-----------------EF 338
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQ 195
+ NL Q+G A + Y++A I P A N+ + L +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-06
Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 29/145 (20%)
Query: 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLR 117
++A Q + A L +L ++ +C RLD
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNT-GVL-LLLSSIHFQCRRLDRSAHFSTL--- 58
Query: 118 MIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177
A P A ++ NLG Y ++G A YR A
Sbjct: 59 ------AIKQNP-LLAEAYS----------------NLGNVYKERGQLQEAIEHYRHALR 95
Query: 178 IDPDANKA-CNLSHCLIKQARYTEA 201
+ PD NL+ L+ A
Sbjct: 96 LKPDFIDGYINLAAALVAAGDMEGA 120
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 6e-10
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 43/185 (23%)
Query: 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH---LCSK--QAQ 88
+ E A V KA+ A +AVV + + A + +R S+ +
Sbjct: 52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLA---DEEYRKALASDSRNARVL 108
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRM-IY--HGEAFNGKPTKTARSHGKKFQVTVK 145
+ L + R +E + L + + +Y F
Sbjct: 109 NNYGGFLYEQ----KRYEEAYQRLLEASQDTLYPERSRVFE------------------- 145
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSV 204
NLG +Q A+ + K+ ++ + ++ L K+ Y AR
Sbjct: 146 --------NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197
Query: 205 LEDVL 209
+
Sbjct: 198 YDLFA 202
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 30/199 (15%), Positives = 60/199 (30%), Gaps = 34/199 (17%)
Query: 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQA 87
E +P+ A + KA+ + R L + L +Q R +EA + A + + +
Sbjct: 84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143
Query: 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147
E+L V + + + + E ++ LR+ +
Sbjct: 144 FENLGLVSLQM----KKPAQAKEYFEKSLRL---------NRNQ---------------- 174
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLED 207
+ + ++ Y A Y ++ L L K + +
Sbjct: 175 -PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL 233
Query: 208 VLLGKLSGSTETKTINRVK 226
L GS E + K
Sbjct: 234 QLKRLYPGSLEYQEFQAEK 252
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ E LG Y+Q+GN A+V RKA IDP + A L+ + A
Sbjct: 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLA 90
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-09
Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 36/183 (19%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ E A+ L+ KA+ +A ++A VL+QQ ++ EA+ K + A
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD--AY 80
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL 152
+ + + K+ + ++ + + + +
Sbjct: 81 SNMGNTLKEMQDVQGALQCYTR--------------------------AIQINPAFADAH 114
Query: 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQ-------ARYTEARSV 204
NL + GN A YR A + PD A CNL+HCL R + S+
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 205 LED 207
+ D
Sbjct: 175 VAD 177
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-05
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
L NL ++GN A +YRKA + P+ A NL+ L +Q + EA ++ +
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 5e-09
Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 43/179 (24%)
Query: 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-----KQAQES 90
+AA+ LF +A+ + AL +A + V+ A +++ + L +
Sbjct: 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA---LENGKTLVARTPRYLGGYMV 78
Query: 91 LDNVLIDLY-------KKCGRLDEQIELLKQKLRMI-YHGEAFNGKPTKTARSHGKKFQV 142
L + LY + G L++ + +LK R+ +
Sbjct: 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL---------------- 122
Query: 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEA 201
G Y G AE ++A ++ L+ + R EA
Sbjct: 123 -----------QRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEA 170
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 4e-04
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
LG G Y +A ++ +A +P +A L+ +K A
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA 58
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 7e-09
Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 32/176 (18%)
Query: 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-- 84
++ E A V F KA+ + +A+ + D + AI R
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205
Query: 85 ---KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141
+ + L L + ++ E +L+++ L
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----------------------- 242
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQA 196
+ +L + Y +K A + +KA P+ C + C +
Sbjct: 243 ---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV 295
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 10/149 (6%)
Query: 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-----AQESLD 92
A+ KA A D + +A + D+ +EA F+ SK+ Q
Sbjct: 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEA---EYYFQKEFSKELTPVAKQLLHL 375
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL 152
+ D+ I + +++ + ++ + K K +++ S L
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSKNGADSEAL 433
Query: 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181
L + A+ +
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSL 462
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 4e-06
Identities = 26/187 (13%), Positives = 50/187 (26%), Gaps = 33/187 (17%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVL----KQQDRVDEAVEAIKSFRHLCSKQAQ 88
+ AI +AI +A+ L ++ + E + ++
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT- 247
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLR-------------MIYHGEAFNGKP-TKTAR 134
+ L + Y++ D+ IELLK+ L Y + F +
Sbjct: 248 DVLRS-AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306
Query: 135 SHGKKFQ-------------VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181
+K R+ L + Y AE ++K +
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366
Query: 182 ANKACNL 188
L
Sbjct: 367 PVAKQLL 373
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 28/158 (17%)
Query: 63 LKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG 122
++ ++ +D+ + + +++ + ++ N+L L G+ + +E L++ +I
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 123 EAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182
A + + GN W Y G + ++ K + +
Sbjct: 85 HADQAEI-----------------RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127
Query: 183 NKA---------CNLSHCLIKQA--RYTEARSVLEDVL 209
+ C +K + A+ E L
Sbjct: 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 8e-04
Identities = 30/210 (14%), Positives = 62/210 (29%), Gaps = 35/210 (16%)
Query: 34 DPEAAIVLFWKAI---------NAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84
EAA+ KA A R + A V R+ + + +H+C
Sbjct: 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125
Query: 85 KQAQES------LDNVLIDLYKKCG--RLDEQIELLKQKLRMI-YHGEAFNG-------- 127
K + LD KCG + + ++ L + E +G
Sbjct: 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185
Query: 128 ---KPTKTARSHGKKFQVTVKQETSRILGNLGWAY----MQKGNYTSAEVVYRKAQLIDP 180
P++ A ++ + + + + L + E + +A P
Sbjct: 186 DNWPPSQNAIDPLRQ-AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP 244
Query: 181 DANKA-CNLSHCLIKQARYTEARSVLEDVL 209
+ + ++ +A +L+ L
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-09
Identities = 29/194 (14%), Positives = 54/194 (27%), Gaps = 28/194 (14%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ AI +F K AV + + D A + I+++ + +S D
Sbjct: 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76
Query: 93 -NVLIDLYKKCGRLDEQIELLKQKLRM------IYH--GEAFNGKPTKTARSHGKKFQ-- 141
+ K G+ I+ + + +Y G F K F
Sbjct: 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK---------GNFPLA 127
Query: 142 -------VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLI 193
+ ++ LG AY Y A+ + K + P+ +
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA 187
Query: 194 KQARYTEARSVLED 207
Q T+
Sbjct: 188 AQDPDTKQGLAKPY 201
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 21/190 (11%), Positives = 47/190 (24%), Gaps = 30/190 (15%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
AI + A++ + + A++ I+ +
Sbjct: 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-----PTTTDP 142
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRM--------IYHGEAF----NGKPTKTARSH 136
+ L Y + + L + ++ A A+ +
Sbjct: 143 KVFYE-LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201
Query: 137 GKKF-------QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNL 188
+K K E + + Y + A+ ++ +DP KA L
Sbjct: 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261
Query: 189 SHCLIKQARY 198
L +
Sbjct: 262 KMKLEHHHHH 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 8e-09
Identities = 57/311 (18%), Positives = 97/311 (31%), Gaps = 89/311 (28%)
Query: 26 KHVQLVEKDPEAAI-VLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAI--KSFRHL 82
H+ ++ KD + LFW L KQ++ V + VE + +++ L
Sbjct: 52 DHI-IMSKDAVSGTLRLFWT-----------LLS-----KQEEMVQKFVEEVLRINYKFL 94
Query: 83 CSKQAQESLDNVLI-DLYKKC-GRL--------------DEQIELLKQKLR-------MI 119
S E ++ +Y + RL + L+Q L ++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 120 YHGEAFNGKPT---KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176
G +GK S+ K Q ++ + W + N S E V Q
Sbjct: 155 IDGVLGSGKTWVALDVCLSY--KVQ-------CKMDFKIFWLNL--KNCNSPETVLEMLQ 203
Query: 177 ----LIDPDANKACN---------------LSHCLIKQARYTEARSVLEDV----LLGKL 213
IDP+ + L L+K Y VL +V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 214 SGSTETKTINRVKELLQELEPWQSIPPSLTTKKSSLEDAFLEGLDDLMNQWTPYRSRRLP 273
+ S + R K++ L + SL +L E L+ ++ R + LP
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVK-SLLLKYLDCRPQDLP 319
Query: 274 IFEE---ISPF 281
E +P
Sbjct: 320 --REVLTTNPR 328
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 21/174 (12%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
+D + A F KA + +A +L +Q + E+ F +
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPEVP 381
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
+L D G D I+ R+ + + H + K
Sbjct: 382 TFFAEILTDR----GDFDTAIKQYDIAKRL---------EE-VQEKIHVGIGPLIGKATI 427
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ + + + +A + KA +DP + +A L+ ++ + EA
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 21/174 (12%), Positives = 52/174 (29%), Gaps = 38/174 (21%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
+ A VL ++IN + + +A+ L ++ E + A+ L +
Sbjct: 257 NNLLDAQVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVD----LNPEYP- 310
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
+ + +Y E ++ + P + +
Sbjct: 311 PTYYH-RGQMYFILQDYKNAKEDFQKAQSL---------NP-ENVYPYI----------- 348
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
L ++G +T +E + + +L P + + L + + A
Sbjct: 349 -----QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 31/223 (13%), Positives = 54/223 (24%), Gaps = 54/223 (24%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIK--------------- 77
D E I KA+ AL A + +A+ +
Sbjct: 73 GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132
Query: 78 SFRHLCSKQAQESLDNVLIDLYKKC-----------------------------GRLDEQ 108
+KQA + L+ L + D
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192
Query: 109 IELLKQKLRMIYH-GEAFNGKPTKTARSHGKKFQVTVKQETSRI---------LGNLGWA 158
LL L+ +Y + + + T L G
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252
Query: 159 YMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEA 201
+ K N A+V+ +++ + P N L+ L + E
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 16/182 (8%)
Query: 32 EKDPEAAIVLFWKAI--NAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89
+ + A L A+ + L ++ K D + A L A
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA-L 244
Query: 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------GKPTKTARSHGKKF 140
+L + L + LL++ + + ++ + +K
Sbjct: 245 ALCY-TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQE-FFKFFQKA 302
Query: 141 QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYT 199
V + E + G Y +Y +A+ ++KAQ ++P+ L+ L KQ ++T
Sbjct: 303 -VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361
Query: 200 EA 201
E+
Sbjct: 362 ES 363
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/183 (8%), Positives = 47/183 (25%), Gaps = 41/183 (22%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIK----------S 78
+ F + + A +L + D A++ A +
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417
Query: 79 FRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGK 138
L K + + + + I+LL + + P ++ ++
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---------DP-RSEQAKI- 466
Query: 139 KFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARY 198
L +Q A ++ + ++ ++ + + A+
Sbjct: 467 ---------------GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT-TFAEAAKI 510
Query: 199 TEA 201
+
Sbjct: 511 QKR 513
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 20/174 (11%), Positives = 39/174 (22%), Gaps = 37/174 (21%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
++ + F KA++ + A E A L +
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS----LNPENV- 344
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
L L K G+ E + PT
Sbjct: 345 YPYIQ-LACLLYKQGKFTESEAFFNETKLK---------FPTL----------------- 377
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ +G++ +A Y A+ ++ K + + K
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+Q + L N G + N+ A Y+ A +DP+ N+S C I +
Sbjct: 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKV 78
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 24/181 (13%), Positives = 60/181 (33%), Gaps = 14/181 (7%)
Query: 29 QLVEKDPEAAIVLFWKAINAGDRVDSALK-DMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87
Q + + + + +W ++ + S L ++A+ K+ D+A K
Sbjct: 29 QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV 88
Query: 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRM--------IYHGEAF--NGKPTKTARSHG 137
+ L+ ++ G+ + + + ++ L++ I+ G + + K
Sbjct: 89 -DCLEA-CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146
Query: 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQAR 197
K +++ + G + + Y A +K L P L L +
Sbjct: 147 YK-KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKE 205
Query: 198 Y 198
Sbjct: 206 V 206
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-07
Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157
+ G+ + + +Q + + + +S++ L
Sbjct: 13 AAIEAGQNGQAVSYFRQ---------TIALNIDR-TEMYYWTNVDKNSEISSKLATELAL 62
Query: 158 AYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
AY + NY A + Y++ P+ + + + + +A + E +L
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 28/196 (14%), Positives = 58/196 (29%), Gaps = 26/196 (13%)
Query: 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQES 90
A VL KA+ + A + V ++ V A C K + ++
Sbjct: 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN 175
Query: 91 LDNVLIDL-----YKKCGRLDEQIELLKQKLRM-IYHGEAFNGKPTKTARSHGKKFQVTV 144
L VL L + + + + K ++M + G ++ + Q
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235
Query: 145 KQETS--------RILG----------NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA- 185
+ + ++ N + + +Y A + +A +DP +
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295
Query: 186 CNLSHCLIKQARYTEA 201
L +R T
Sbjct: 296 QREQQLLEFLSRLTSL 311
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 15/146 (10%)
Query: 67 DRVDEAVEAIKSFR-HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM------I 119
++ V+ + FR + E D+ ++ +++ ++ +++ L
Sbjct: 48 QKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEE---MEKTLQQMEEVLGSAQVEAQA 104
Query: 120 YH--GEAFN--GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175
G+A N + A K V ++ E LG Y +KG+ TSA + A
Sbjct: 105 LMLKGKALNVTPDYSPEAEVLLSKA-VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163
Query: 176 QLIDPDANKACNLSHCLIKQARYTEA 201
+ NLS L + +
Sbjct: 164 LTHCKNKVSLQNLSMVLRQLQTDSGD 189
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-05
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 145 KQETSRILGNLGWAYMQKGNYT-SAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEAR 202
Q ++ L G A +Y+ AEV+ KA ++P+ +A L K+ T A
Sbjct: 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAH 157
Query: 203 SVLEDVL 209
+ L
Sbjct: 158 TCFSGAL 164
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 23/181 (12%), Positives = 53/181 (29%), Gaps = 35/181 (19%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAI-----------KSFRH 81
+P AI A A ++ + Q + ++ + + F H
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Query: 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141
+ L +L + GR + + ++ +P+
Sbjct: 228 YKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKT---------EPS----------- 266
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTE 200
V + T R + + + A + + ++PD A + + + + Y E
Sbjct: 267 --VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
Query: 201 A 201
A
Sbjct: 325 A 325
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
++ G +A K + D A H L+KQ + EA + VL
Sbjct: 40 YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 24/200 (12%), Positives = 51/200 (25%), Gaps = 40/200 (20%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
A+ F A++ A A V + A+ + L
Sbjct: 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP--------DLTKVIA-LK 67
Query: 93 -------NVLIDLYKKCGRLDEQIELLKQKLRM--------IYHGEAFNGKPTKTARSHG 137
L K G+LDE + K+ L+ + + RS
Sbjct: 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127
Query: 138 ------KKFQVTVKQ---------ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182
+ + + + ++++G A + A + D
Sbjct: 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187
Query: 183 NKA-CNLSHCLIKQARYTEA 201
+A +S + + +
Sbjct: 188 TEAFYKISTLYYQLGDHELS 207
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-08
Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 45/175 (25%)
Query: 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSK--QAQE 89
A++L + +A + + + VD E ++ +
Sbjct: 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDNVKVAT 80
Query: 90 SLDNVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147
L + + + D + LL + + I
Sbjct: 81 VLGLTYVQV----QKYDLAVPLLIKVAEANPINF-NVRF--------------------- 114
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
LG A G + A ++ A + P+ K ++ + R+ EA
Sbjct: 115 ------RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 5e-07
Identities = 24/159 (15%), Positives = 40/159 (25%), Gaps = 41/159 (25%)
Query: 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-----KQAQESLDNVLIDLYKKCGR 104
D +D + + R +A + + L + G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQA---VMLLEQVYDADAFDVDVALHLGIAYVKT----GA 57
Query: 105 LDEQIELLKQKLRMI-YHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163
+D ELL++ L + + LG Y+Q
Sbjct: 58 VDRGTELLERSLADAPDNVKVAT---------------------------VLGLTYVQVQ 90
Query: 164 NYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
Y A + K +P L L R+ EA
Sbjct: 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-05
Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 42/160 (26%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH-LCSK----QA 87
+ L +++ + + Q + D A + +
Sbjct: 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLA---VPLLIKVAEANPINFNV 112
Query: 88 QESLDNVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVK 145
+ L L +L GR DE I+ K LR +
Sbjct: 113 RFRLGVALDNL----GRFDEAIDSFKIALGLRPNEG-KVHR------------------- 148
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185
+ ++Y Q G + A ++KA +D A+
Sbjct: 149 --------AIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 5e-08
Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 40/175 (22%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ E AI A+ G + + K ++ + + K+ E
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK---LGDL-----KKTIEYYQ 103
Query: 93 NVLI-----DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147
L D+ K +++++ + + + E
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYV--------------------------NPE 137
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ G Y K ++ +A Y + P+ + N + L K + EA
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 30/192 (15%)
Query: 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIK-------------SFRHL 82
AI+ A + + +AV + + A+ +++ S
Sbjct: 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM------IYH--GEAFN--GKPTKT 132
+ + E LL L M ++ G +N
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 133 ARSHGKKFQ--VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLS 189
A + + V ++ + +++ LG A Y +A I+P + N++
Sbjct: 192 AAN----LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
Query: 190 HCLIKQARYTEA 201
++Y A
Sbjct: 248 VSYSNMSQYDLA 259
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 22/179 (12%), Positives = 53/179 (29%), Gaps = 30/179 (16%)
Query: 32 EKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90
+ A + F A +R + A + + + + ++ A+ A+ A+
Sbjct: 34 LANLAEAALAFEAVCQAAPEREE-AWRSLGLTQAENEKDGLAIIALN--------HARM- 83
Query: 91 LD-------NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT 143
LD L + + + L+ L +P + + Q
Sbjct: 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS---------QP-QYEQLGSVNLQAD 133
Query: 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
V + + + + + Y + A ++P+ + +L Y A
Sbjct: 134 VDID-DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
+LG + A + A+++DP L+ + A + L L
Sbjct: 60 SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 116
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
G + ++ N A + + P+ +A +L + + A
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLA 74
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 40/181 (22%)
Query: 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIK-------SFRHLCSKQAQ 88
AI + + +AL +AV + +A E ++ ++ HL + +
Sbjct: 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174
Query: 89 ESLDNVLIDLYK------KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT-ARSHGKKFQ 141
+ L + E EL +R+ PT
Sbjct: 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL---------DPTSIDPDVQC---- 221
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTE 200
LG + G Y A + A + P+ L L + E
Sbjct: 222 ------------GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269
Query: 201 A 201
A
Sbjct: 270 A 270
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 28/182 (15%), Positives = 57/182 (31%), Gaps = 34/182 (18%)
Query: 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91
E D A++LF A+ + A + + + ++ A+ A++ + E L
Sbjct: 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR--------RCLE-L 127
Query: 92 D-------NVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQV 142
L + + E+L+ + Y + G
Sbjct: 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG----- 182
Query: 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA---CNLSHCLIKQARYT 199
+ RILG+L + + + ++ A +DP + C L Y
Sbjct: 183 ----PSKRILGSL----LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234
Query: 200 EA 201
+A
Sbjct: 235 KA 236
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
LG + A R+ + PD A L+ ++ +A +L D L
Sbjct: 103 YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 52/185 (28%)
Query: 36 EAAIVLFWKAIN-AGDRVDS-ALKDMAVVLKQQDRVDEAVEAIKSFRH-LCSK----QAQ 88
LF A+ +D + V+ D+A + F L +
Sbjct: 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA---VDCFTAALSVRPNDYLLW 254
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
L L + + +E + ++ L + +P RS
Sbjct: 255 NKLGATLANG----NQSEEAVAAYRRALEL---------QPGY-IRSRY----------- 289
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA------------CNLSHCLIKQA 196
NLG + + G + A + +A + + L L
Sbjct: 290 -----NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344
Query: 197 RYTEA 201
+
Sbjct: 345 QSDAY 349
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 23/178 (12%), Positives = 48/178 (26%), Gaps = 48/178 (26%)
Query: 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE---------------SLDNVLIDL 98
L ++A++ + Q + +E ++A E + +N L
Sbjct: 128 KQLNNLALLCQNQGKAEEVEY--------YYRRALEIYATRLGPDDPNVAKTKNN-LASC 178
Query: 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158
Y K G+ + L K+ L + E G +G + I +
Sbjct: 179 YLKQGKYQDAETLYKEILTRAH--EKEFGS------VNG---------DNKPIWMHAEER 221
Query: 159 YMQKGNYTSAEVVYRKAQLID------PD-ANKACNLSHCLIKQARYTEARSVLEDVL 209
K + P +L +Q + A ++ +
Sbjct: 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-05
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 28/129 (21%)
Query: 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETS 149
L+ L +Y+ + E LL L + E GK H +
Sbjct: 45 MLNI-LALVYRDQNKYKEAAHLLNDALAI---REKTLGK------DH---------PAVA 85
Query: 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLID--------PD-ANKACNLSHCLIKQARYTE 200
L NL Y ++G Y AE + ++A I PD A + NL+ Q + E
Sbjct: 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145
Query: 201 ARSVLEDVL 209
L
Sbjct: 146 VEYYYRRAL 154
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 29/190 (15%), Positives = 58/190 (30%), Gaps = 58/190 (30%)
Query: 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE---------------SLDNVLIDL 98
+ L ++AV+ ++ + EA LC K+A E L+N L L
Sbjct: 86 ATLNNLAVLYGKRGKYKEAEP-------LC-KRALEIREKVLGKFHPDVAKQLNN-LALL 136
Query: 99 YKKCGRLDEQIELLKQKLRM---IYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155
+ G+ +E ++ L + G ++ NL
Sbjct: 137 CQNQGKAEEVEYYYRRALEIYATRL-GPD-----------D---------PNVAKTKNNL 175
Query: 156 GWAYMQKGNYTSAEVVYRKAQLI---------DPD-ANKACNLSHCLIKQARYTEARSVL 205
Y+++G Y AE +Y++ + D + + + ++
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235
Query: 206 EDVLLGKLSG 215
E K
Sbjct: 236 EYGSWYKACK 245
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 147 ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--------DPD-ANKACNLSHCLIKQAR 197
+ + +L L Y + Y A + A I P A NL+ K+ +
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 198 YTEARSVLEDVL 209
Y EA + + L
Sbjct: 101 YKEAEPLCKRAL 112
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 53/182 (29%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE--- 89
D E A F KAI + A +L + ++ A + + +A E
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERA---LAFY-----DKALELDS 88
Query: 90 -------SLDNVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKF 140
NV + E ++ ++ + M + F
Sbjct: 89 SAATAYYGAGNVYVVK----EMYKEAKDMFEKALRAGMENG-DLFY-------------- 129
Query: 141 QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYT 199
LG ++ A ++A ++ + +A CL +
Sbjct: 130 -------------MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176
Query: 200 EA 201
EA
Sbjct: 177 EA 178
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 6e-06
Identities = 29/174 (16%), Positives = 48/174 (27%), Gaps = 43/174 (24%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-----KQA 87
+ + A +F KA+ AG + VL + ++ A + + +A
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA---LPYLQRAVELNENDTEA 161
Query: 88 QESLDNVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVK 145
+ L + G LDE + + + +AF
Sbjct: 162 RFQFGMCLANE----GMLDEALSQFAAVTEQDPGHA-DAFY------------------- 197
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARY 198
N G Y K N A + KA I PD A +
Sbjct: 198 --------NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-05
Identities = 13/140 (9%), Positives = 27/140 (19%), Gaps = 37/140 (26%)
Query: 69 VDEAV----EAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY--HG 122
+ + + + + G ++ E + +
Sbjct: 1 MGSSHHHHHHSSGLVPR--GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-ENKEDA 57
Query: 123 EAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182
+ N A Y KA +D A
Sbjct: 58 IPYI---------------------------NFANLLSSVNELERALAFYDKALELDSSA 90
Query: 183 NKA-CNLSHCLIKQARYTEA 201
A + + + Y EA
Sbjct: 91 ATAYYGAGNVYVVKEMYKEA 110
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 39/228 (17%)
Query: 22 YVRAKHVQLVEKDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVLKQQDRVDEAVEA 75
Y +A K E A + + N +A + ++LK R+ EAV+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 76 IKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARS 135
I+ +Y + G D L + + +K
Sbjct: 99 IEK----------------ASVMYVENGTPDTAAMALD-RAGKLME----PLDLSKAVHL 137
Query: 136 HGKKFQVTVKQE----TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD-------ANK 184
+ + V +E + ++G +++ + A +K + + + K
Sbjct: 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197
Query: 185 ACNLSHCLIKQARYTEARSVLEDVL-LGKLSGSTETKTINRVKELLQE 231
+ +A Y A+ + + + SGS + + + + E
Sbjct: 198 CIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDE 245
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-07
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLED 207
+ L Y K + A +Y A + + + C ++ +A+ E
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129
Query: 208 VLLGKLSGSTETKTINRVKELLQELE 233
V + S + K + + L ++
Sbjct: 130 V----IQHSNDEKLKIKAQSYLDAIQ 151
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDP-DANKACNLSHCLIKQARYTEA 201
+ + + KG AEV +R + D + + L+ + ++ +A
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 24/183 (13%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK--QAQES 90
A+ F A++ A A V + A+ +K Q +
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIQLKMD 92
Query: 91 LDNVLIDL---YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147
+ K G+LDE + K+ L+ P++ + +K +
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---------NPSENEEKEAQ--SQLIKSD 141
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLE 206
+ L + G+YT+A K + + + C IK+ +A S L+
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 207 DVL 209
Sbjct: 202 AAS 204
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 13/178 (7%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+P AI A + A ++ + Q + ++ ++ L +
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR---- 246
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL 152
YK+ +L++ IE ++ +R + +A + K + ++ + T R
Sbjct: 247 --CFAHYKQVKKLNKLIESAEELIRDGRYTDATS------KYESVMKTEPSIAEYTVRSK 298
Query: 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
+ + + A V + ++PD A + + + + Y EA E
Sbjct: 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 41/194 (21%)
Query: 29 QLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88
++++ +P ++ L+ A+ A+ + +C A+
Sbjct: 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
L + + + K G + I LK ++ K T
Sbjct: 179 --LRELRAECFIKEGEPRKAISDLKAASKL---------KNDNT---------------- 211
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD-------------ANKACNLSHCLIKQ 195
+ Y Q G++ + R+ +D D NK + LI+
Sbjct: 212 -EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270
Query: 196 ARYTEARSVLEDVL 209
RYT+A S E V+
Sbjct: 271 GRYTDATSKYESVM 284
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-07
Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 37/194 (19%)
Query: 33 KDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVLKQQDRVDEAVE----AIKSFR-H 81
K+ AI + +A D ++ A +A + ++ A+ ++ H
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141
V+ Y D+ + L+ L + A
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL--------------AMDIQND-- 218
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA------CNLSHCLIKQ 195
+ + L N+ +Y + G+ A ++KA + + LS L K
Sbjct: 219 ----RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 196 ARYTEARSVLEDVL 209
+ +A +E+ L
Sbjct: 275 GQTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 29/179 (16%)
Query: 33 KDPEAAIVLFWKAINAGDRVD------SALKDMAVVLKQQDRVDEAVE----AIKSFRHL 82
K + A+ A+ + +L ++A + AVE A K R
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255
Query: 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV 142
+ L L K G+ + + +++ L I
Sbjct: 256 VPDLLPKVLFG-LSWTLCKAGQTQKAFQFIEEGLDHI------------------TARSH 296
Query: 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEA 201
+E L + + + + K L A + + + +A
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212
LG G Y A Y L+D + + + + C ++ A S
Sbjct: 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116
Query: 213 LSGSTETKTINRVKELLQELE 233
+ R +L+ +
Sbjct: 117 AAQPAHEALAARAGAMLEAVT 137
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-06
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 135 SHGKKFQ--VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHC 191
S G + ++T L LG+ Q G + A+ +++ ++D + L C
Sbjct: 2 SDGGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGAC 61
Query: 192 LIKQARYTEA 201
Y +A
Sbjct: 62 RQSLGLYEQA 71
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 39/194 (20%)
Query: 31 VEKDPEAAIVLFWKAIN----AGDRVD--SALKDMAVVLKQQDRVDEAVE----AIKSFR 80
V++ A+ + + + GDR A ++ A+E ++ R
Sbjct: 195 VKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254
Query: 81 HLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKK 139
+ A+ + N L + + G+ ++ E K+ L + A G++
Sbjct: 255 EFGDRAAERRANSN-LGNSHIFLGQFEDAAEHYKRTLAL--------------AVELGER 299
Query: 140 FQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID------PDANKAC-NLSHCL 192
+ ++ +LG Y + +A + + I +AC +L +
Sbjct: 300 ------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353
Query: 193 IKQARYTEARSVLE 206
+ A E
Sbjct: 354 SAIGGHERALKYAE 367
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 54/207 (26%)
Query: 34 DPEAAIVLFWKAI----NAGDRVD--SALKDMAVVLKQQDRVDEAVE----AIKSFRHLC 83
D A+ + + DR+ + ++ LK R DEA + R L
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160
Query: 84 SKQAQ-ESLDN----------------VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN 126
+ ++ +L N L +E ++ L+++
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM---RDLG 217
Query: 127 GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD----- 181
+ R+ GNLG Y G++ +A +++ I +
Sbjct: 218 DRG-AQGRA----------------CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260
Query: 182 --ANKACNLSHCLIKQARYTEARSVLE 206
NL + I ++ +A +
Sbjct: 261 AERRANSNLGNSHIFLGQFEDAAEHYK 287
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 56/208 (26%)
Query: 34 DPEAAIVLFWKAIN----AGDRVD--SALKDMAVVLKQQ-----------------DRVD 70
+ A + + + GDR+ AL ++ V + + +
Sbjct: 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200
Query: 71 EAVE----AIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF 125
AVE +K R L + AQ + N L + Y G IE +++LR+
Sbjct: 201 RAVEFYQENLKLMRDLGDRGAQGRACGN-LGNTYYLLGDFQAAIEHHQERLRI------- 252
Query: 126 NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA----QLIDPD 181
AR G + R NLG +++ G + A Y++ +
Sbjct: 253 -------AREFGDR------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299
Query: 182 ANKAC---NLSHCLIKQARYTEARSVLE 206
+A +L + + A
Sbjct: 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHN 327
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 25/168 (14%), Positives = 42/168 (25%), Gaps = 39/168 (23%)
Query: 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD--------NVLIDLYKKCGRL 105
S+L A + S S+Q S + + G
Sbjct: 7 SSLSASAENVSSLGLGSGG-GGTNSH-DGNSQQGSGSDGGSSMCLELALEGERLCNAGDC 64
Query: 106 DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165
+ + ++ + S I LG AY G+Y
Sbjct: 65 RAGVAFFQAAIQA----------------------GTEDLRTLSAIYSQLGNAYFYLGDY 102
Query: 166 TSAEVVYRKAQLI------DPDANKAC-NLSHCLIKQARYTEARSVLE 206
A ++ + K+ NL + L R+ EA E
Sbjct: 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-07
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLE 206
LG Y + + +A R A DP + A L L Q AR E
Sbjct: 24 TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 29/173 (16%)
Query: 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQESL 91
+AAIV + + AL +AV +A EA+K + ++
Sbjct: 116 QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK--NWIKQNPKYKYLVKNK 173
Query: 92 DNVLIDLYKKCGRLDEQIELLKQKLRMI-YHGEAFNGKPTKT-ARSHGKKFQVTVKQETS 149
R+ + + + EA +
Sbjct: 174 KGSPGLT----RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT------------ 217
Query: 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
LG + G + A + A + P+ L L R EA
Sbjct: 218 ----GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 25/183 (13%), Positives = 43/183 (23%), Gaps = 41/183 (22%)
Query: 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAV-------EAIKSFR---H 81
+ A I + +K+ R+ ++ + + H
Sbjct: 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205
Query: 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKK 139
L L L+ G + I+ +R + +N
Sbjct: 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-SLWN------------- 251
Query: 140 FQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARY 198
LG A Y +A I P ++ NL I Y
Sbjct: 252 --------------RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 199 TEA 201
EA
Sbjct: 298 REA 300
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 41/188 (21%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAV--------VLKQQDRVDEAVEAIKSFRHLCS 84
+ E A D++ + ++MA + Q V + +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY--HGEAFNGKPTKTARSHGKKFQV 142
K + + K+ G L I ++ + EA+
Sbjct: 63 KDWPGAF-EEGLKRLKE-GDLPVTILFMEAAIL-QDPGDAEAWQ---------------- 103
Query: 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
LG + N +A V ++ + P+ KA L+ + +A
Sbjct: 104 -----------FLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 202 RSVLEDVL 209
L++ +
Sbjct: 153 CEALKNWI 160
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-07
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 29/114 (25%)
Query: 98 LYKKCGRLDEQIELLKQKLRM-IYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156
K L E + + EA+ +LG
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEAWR---------------------------SLG 58
Query: 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
+ A + A+++DP L+ + A + L L
Sbjct: 59 LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-07
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
LG + G Y AE V P+ + L RY + +L ++
Sbjct: 32 GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 9e-07
Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 40/174 (22%)
Query: 54 SALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQ----AQESLDNVLIDLYKKCGRL 105
L ++A++ + Q + +E A++ ++ A+ + +N L Y K G+
Sbjct: 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK-TKNN-LASCYLKQGKF 211
Query: 106 DEQIELLKQKLRMIY---HGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162
+ L K+ L + G E I + K
Sbjct: 212 KQAETLYKEILTRAHEREFGSV-----------D---------DENKPIWMHAEEREECK 251
Query: 163 GNYTSAEVVYRKAQLID------PD-ANKACNLSHCLIKQARYTEARSVLEDVL 209
G P NL +Q ++ A ++ E +
Sbjct: 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-06
Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 51/180 (28%)
Query: 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE---------------SLDNVLIDL 98
+ L +A+V + Q++ +A A +L+N L L
Sbjct: 70 TMLNILALVYRDQNKYKDAAN--------LLNDALAIREKTLGKDHPAVAATLNN-LAVL 120
Query: 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158
Y K G+ E L K+ L + + A+ L NL
Sbjct: 121 YGKRGKYKEAEPLCKRALEI--REKVLGKDHPDVAKQ----------------LNNLALL 162
Query: 159 YMQKGNYTSAEVVYRKAQLI--------DPD-ANKACNLSHCLIKQARYTEARSVLEDVL 209
+G Y E Y++A I DP+ A NL+ C +KQ ++ +A ++ +++L
Sbjct: 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 55/182 (30%)
Query: 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE---------------SLDNVLIDL 98
L ++ + Q R + AV KQA E L+ L +
Sbjct: 28 RTLHNLVIQYASQGRYEVAVP--------LCKQALEDLEKTSGHDHPDVATMLNI-LALV 78
Query: 99 YKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156
Y+ + + LL +R G+ H + L NL
Sbjct: 79 YRDQNKYKDAANLLNDALAIREKTLGK-----------DH---------PAVAATLNNLA 118
Query: 157 WAYMQKGNYTSAEVVYRKAQLID--------PD-ANKACNLSHCLIKQARYTEARSVLED 207
Y ++G Y AE + ++A I PD A + NL+ Q +Y E +
Sbjct: 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178
Query: 208 VL 209
L
Sbjct: 179 AL 180
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-05
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 147 ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--------DPD-ANKACNLSHCLIKQAR 197
R L NL Y +G Y A + ++A PD A L+ Q +
Sbjct: 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK 84
Query: 198 YTEARSVLEDVL 209
Y +A ++L D L
Sbjct: 85 YKDAANLLNDAL 96
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 58/181 (32%)
Query: 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE---------------SLDNVLIDL 98
+ L ++AV+ ++ + EA LC K+A E L+N L L
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEP-------LC-KRALEIREKVLGKDHPDVAKQLNN-LALL 162
Query: 99 YKKCGRLDEQIELLKQKLRM---IYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155
+ G+ +E ++ L + G ++ NL
Sbjct: 163 CQNQGKYEEVEYYYQRALEIYQTKL-GP-----------DD---------PNVAKTKNNL 201
Query: 156 GWAYMQKGNYTSAEVVYRKAQLI---------DPD-ANKACNLSHCLIKQARYTEARSVL 205
Y+++G + AE +Y++ D + + + + + S
Sbjct: 202 ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261
Query: 206 E 206
E
Sbjct: 262 E 262
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-06
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP-DANKACNLSHCLIKQARYTEARSVLED 207
SR LG G Y A Y ++D + + + CL++ EA S L
Sbjct: 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFL 114
Query: 208 VLLGKLSGSTETKTINRVKELLQELE 233
+ + RV +L+ ++
Sbjct: 115 AQELIANXPEFXELSTRVSSMLEAIK 140
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-05
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+L + Q G Y A V++ ++D ++ L C +Y A
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-06
Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 32/190 (16%)
Query: 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81
+ A + +++P+AA+ + + + +L + DR+D A + +K +
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGDSL-----ECMAMTVQILLKLDRLDLARKELKKMQD 158
Query: 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141
L + L +L + + ++
Sbjct: 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------- 195
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP-DANKACNLSHCLIKQARYTE 200
T +L +M +G + +AE V ++A D NL + E
Sbjct: 196 ---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252
Query: 201 ARSVLEDVLL 210
+ L
Sbjct: 253 VTNRYLSQLK 262
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 37/216 (17%), Positives = 67/216 (31%), Gaps = 39/216 (18%)
Query: 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN----AGDRVD--SALKDMAVV 62
YH K P + + V +AA+ L+ + ++ GDR A ++
Sbjct: 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT 192
Query: 63 LKQQDRVDEAVE----AIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLR 117
+AV + + K A+ + N L + Y G + E K+ L
Sbjct: 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN-LGNAYIFLGEFETASEYYKKTLL 251
Query: 118 MIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177
+ AR + ++ +LG Y +Y A + K
Sbjct: 252 L--------------ARQLKDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291
Query: 178 ID------PDANKAC-NLSHCLIKQARYTEARSVLE 206
I +AC +L + + +A E
Sbjct: 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 26/125 (20%)
Query: 55 ALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIE 110
L L + V A++ + L + Y + +E
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA-IYSQ-LGNAYFYLHDYAKALE 64
Query: 111 LLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170
L + AR+ G + ++ GNLG GN+ A V
Sbjct: 65 YHHHDLTL--------------ARTIGDQ------LGEAKASGNLGNTLKVLGNFDEAIV 104
Query: 171 VYRKA 175
++
Sbjct: 105 CCQRH 109
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 32/166 (19%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHL-CSKQA 87
+ A + L ++ VV + + A+ A+ + +++
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147
+ L Y+K D I+ L Q L +
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLL--------------------------STN 548
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCL 192
+ + + Y+ K A ++ I P+ A L L
Sbjct: 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 9e-06
Identities = 22/193 (11%), Positives = 58/193 (30%), Gaps = 33/193 (17%)
Query: 14 KLPPGDSPYVRAKHVQLVEK----DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRV 69
D+ ++R+ ++ + K D + +IN ++ L A L + R
Sbjct: 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321
Query: 70 DEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129
+ + + + + + G ++ + + + + P
Sbjct: 322 IDVLAITTKILEIDPYNL-DVYPL-HLASLHESGEKNKLYLI--------SN-DLVDRHP 370
Query: 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNL 188
+ A + +G Y+ + A + K+ +DP A
Sbjct: 371 -EKAVTWL----------------AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF 413
Query: 189 SHCLIKQARYTEA 201
+H + + +A
Sbjct: 414 AHSFAIEGEHDQA 426
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 14/160 (8%)
Query: 54 SALKDMAVVLKQQDRVDEAVEAIK-----------SFRHLCSKQAQESLDNVLIDLYKKC 102
S V D A E K +F L S + + + L
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 103 GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162
++ + L M+ + + + A + +++S +L +
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING--LEKSSDLLLCKADTLFVR 318
Query: 163 GNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ + K IDP L + +
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDP-DANKACNLSHCLIKQARYTEARSVLEDVL 209
LG +MQ GN A + + + D L ++ A + ++ L
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 30/189 (15%), Positives = 47/189 (24%), Gaps = 44/189 (23%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ 88
A F K+ + A A + D+A+ A + F+
Sbjct: 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH--LPY 444
Query: 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148
L + L G + E L+ + Q
Sbjct: 445 LFLGMQHMQL----GNILLANEYLQSSYAL--------------------------FQYD 474
Query: 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA--------CNLSHCLIKQARYTE 200
+L LG K + +A ++ A L+ NL H K Y
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534
Query: 201 ARSVLEDVL 209
A L L
Sbjct: 535 AIDALNQGL 543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 14/63 (22%), Positives = 20/63 (31%)
Query: 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211
L + + Y A V K I + N A L+ Y A+ +L L
Sbjct: 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146
Query: 212 KLS 214
S
Sbjct: 147 NRS 149
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 13/75 (17%), Positives = 28/75 (37%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKL 213
L Y G+Y A+ + K L + + + CL+K + A ++L + +
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181
Query: 214 SGSTETKTINRVKEL 228
K + + +
Sbjct: 182 DEKNANKLLMQDGGI 196
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 39/216 (18%)
Query: 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN----AGDRVD--SALKDMAVV 62
YH K P + + V +AA+ + + ++ GDR A ++
Sbjct: 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT 196
Query: 63 LKQQDRVDEAVE----AIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLR 117
+AV + + K A+ + N L + Y G + E K+ L
Sbjct: 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN-LGNAYIFLGEFETASEYYKKTLL 255
Query: 118 MIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177
+ + ++ +LG Y +Y A + K
Sbjct: 256 L---ARQLKDRA-----------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295
Query: 178 ID------PDANKAC-NLSHCLIKQARYTEARSVLE 206
I +AC +L + + +A E
Sbjct: 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 57/232 (24%)
Query: 34 DPEAAIVLFWKA--INAGDRVD--SALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSK 85
D A + F A + D + + +A+E + R + +
Sbjct: 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83
Query: 86 QAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRM-------------------IYH--GE 123
+ ++ N L + K G DE I ++ L + +YH G+
Sbjct: 84 LGEAKASGN-LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142
Query: 124 AFNGKPTKTARSHGKKFQVTVKQ-------------------ETSRILGNLGWAYMQKGN 164
+F + ++ + ++ R GNLG + GN
Sbjct: 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 202
Query: 165 YTSAEVVYRKAQLIDPD-------ANKACNLSHCLIKQARYTEARSVLEDVL 209
+ A + + + LI + NL + I + A + L
Sbjct: 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-06
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
L +++ N + A ++ + DPD +L + R +A +
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 44.3 bits (106), Expect = 5e-06
Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 51/155 (32%)
Query: 59 MAVVLKQQDRVDEAVEAIKSFRHLCSK---------QAQESLDNVLIDLYKKCGRLDEQI 109
+ +Q DEA I+ ++ K +A +L N G DE I
Sbjct: 7 LGNAYYKQGDYDEA---IEYYQ----KALELDPRSAEAWYNLGNAYYKQ----GDYDEAI 55
Query: 110 ELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167
E ++ +L EA+ NLG AY ++G+Y
Sbjct: 56 EYYQKALELDPRSA-EAWY---------------------------NLGNAYYKQGDYDE 87
Query: 168 AEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
A Y+KA +DP + +A NL + KQ Y EA
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 41.6 bits (99), Expect = 4e-05
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
NLG AY ++G+Y A Y+KA +DP + +A NL + KQ Y EA
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 54
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 42/156 (26%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH-LCSK----QA 87
D + AI + KA+ R A ++ +Q DEA I+ ++ L +A
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA---IEYYQKALELDPRSAEA 71
Query: 88 QESLDNVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVK 145
+L N G DE IE ++ +L EA+
Sbjct: 72 WYNLGNAYYKQ----GDYDEAIEYYQKALELDPRSA-EAWY------------------- 107
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181
NLG AY ++G+Y A Y+KA +DP
Sbjct: 108 --------NLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 23/195 (11%), Positives = 62/195 (31%), Gaps = 38/195 (19%)
Query: 33 KDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVLKQQDRVDEAVE----AIKSFRHL 82
++ +AI F KA DR++ A M+ + +++ A + ++
Sbjct: 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176
Query: 83 CSKQAQE-SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141
+ + ++ + + ++ I ++ M A + +
Sbjct: 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM--------------AEAEKQPQL 222
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-------CNLSHCLIK 194
+ R L N+G + Y A +++A + ++N ++ K
Sbjct: 223 M------GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276
Query: 195 QARYTEARSVLEDVL 209
+ +A +
Sbjct: 277 LGKIDKAHEYHSKGM 291
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 9e-06
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 35/172 (20%)
Query: 49 GDRVD--SALKDMAVVLKQQDRVDEAVE----AIKSFRHLCSKQAQ-ESLDNVLIDLYKK 101
G R A ++ +AV + + K A+ + N L + Y
Sbjct: 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN-LGNAYIF 61
Query: 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161
G + E K+ L + AR + ++ +LG Y
Sbjct: 62 LGEFETASEYYKKTLLL--------------ARQLKDR------AVEAQSCYSLGNTYTL 101
Query: 162 KGNYTSAEVVYRKAQLID------PDANKAC-NLSHCLIKQARYTEARSVLE 206
+Y A + K I +AC +L + + +A E
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 38.3 bits (90), Expect = 8e-04
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 32/153 (20%)
Query: 34 DPEAAIVLFWKAIN----AGDRVD--SALKDMAVVLKQQDRVDEAVE----AIKSFRHLC 83
+ A++ + + GD+ A ++ + A E + R L
Sbjct: 24 NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83
Query: 84 SKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV 142
+ + +S + L + Y ++ I+ + L + A+ +
Sbjct: 84 DRAVEAQSCYS-LGNTYTLLQDYEKAIDYHLKHLAI--------------AQELKDR--- 125
Query: 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175
R +LG AY GN+ A K
Sbjct: 126 ---IGEGRACWSLGNAYTALGNHDQAMHFAEKH 155
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 52/163 (31%)
Query: 45 AINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK---------QAQESLDNVL 95
A++ G+ + A ++ +Q DEA I+ ++ K +A +L N
Sbjct: 2 AMDPGNSAE-AWYNLGNAYYKQGDYDEA---IEYYQ----KALELDPNNAEAWYNLGNAY 53
Query: 96 IDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153
G DE IE ++ +L EA+
Sbjct: 54 YKQ----GDYDEAIEYYQKALELDPNNA-EAWY--------------------------- 81
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQ 195
NLG AY ++G+Y A Y+KA +DP+ +A NL + KQ
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 41.2 bits (98), Expect = 5e-05
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
NLG AY ++G+Y A Y+KA +DP+ +A NL + KQ Y EA
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 9e-05
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
NLG AY ++G+Y A Y+KA +DP+ +A NL + KQ Y EA
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/172 (9%), Positives = 38/172 (22%), Gaps = 33/172 (19%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ--ES 90
+ + + + +A + A+ + + V + + L +Q S
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349
Query: 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSR 150
D L + + +L Q + E
Sbjct: 350 HDGGKQAL----ETVQRLLPVLCQAHG--------------------------LTPEQVV 379
Query: 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ + G V +A + P+ A +
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRL 431
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 12/170 (7%), Positives = 34/170 (20%), Gaps = 29/170 (17%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ + + + +A + A+ + + V + + + Q
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPEQVVAI 143
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL 152
+ + + +L Q + E +
Sbjct: 144 ASHDGGKQALETVQALLPVLCQAH--------------------------GLTPEQVVAI 177
Query: 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ G V +A + P A +
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 12/170 (7%), Positives = 38/170 (22%), Gaps = 29/170 (17%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ + + + +A + A+ + + V + + L +Q ++
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV-VAIA 280
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL 152
+ + + + +L Q + + +
Sbjct: 281 S-NSGGKQALETVQRLLPVLCQAHG--------------------------LTPQQVVAI 313
Query: 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ G V +A + P A +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 16/188 (8%), Positives = 44/188 (23%), Gaps = 15/188 (7%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ +A + + +A A+ + + V + + L +Q ++
Sbjct: 154 ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV-VAIA 212
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRMI-YHGEAFNGKPTKTARSHGKKFQ---------V 142
+ + + + +L Q + A + + Q
Sbjct: 213 S-NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN--GGGKQALETVQRLLPVLCQAH 269
Query: 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
+ + + + V +A + P A +
Sbjct: 270 GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 329
Query: 202 RSVLEDVL 209
VL
Sbjct: 330 LPVLCQAH 337
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 29/152 (19%), Positives = 44/152 (28%), Gaps = 37/152 (24%)
Query: 57 KDMAVVLKQQDRVDEAV----EAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELL 112
+ +AV L+ + + + + + S ++A + L LY G
Sbjct: 9 EVLAVPLQPTLQQEVILARMEQILASRALTDDERA-QLLYE-RGVLYDSLGLRALARNDF 66
Query: 113 KQKLRMIY--HGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170
Q L I E FN LG Q GN+ +A
Sbjct: 67 SQALA-IRPDMPEVFN---------------------------YLGIYLTQAGNFDAAYE 98
Query: 171 VYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201
+ +DP N A N L R A
Sbjct: 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/173 (8%), Positives = 38/173 (21%), Gaps = 33/173 (19%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESL 91
+ A + + ++ D + F + +
Sbjct: 125 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 184
Query: 92 DNVLIDLYKKCGRLDEQIELLKQ--KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETS 149
+ L ++ ++ ++ L E
Sbjct: 185 EFYLGNISEQ-TLMERLKADATDNTSLAEHLS-ETNF----------------------- 219
Query: 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD-ANKACNLSHCLIKQARYTEA 201
LG Y+ G+ SA +++ A + + L + +
Sbjct: 220 ----YLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 23/186 (12%), Positives = 38/186 (20%), Gaps = 45/186 (24%)
Query: 36 EAAIVLFWKAINAGDRVDS----ALKDMAVVLKQQDRVDEAVEAIKSFRH---LCSKQAQ 88
E + + + + D L + V+ A F + +
Sbjct: 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA---RNDFSQALAIRPDMPE 78
Query: 89 --ESLDNVLIDLYKKCGRLDEQIELLKQKLRMI-YHGEAFNGKPTKTARSHGKKFQVTVK 145
L L G D E L + + A
Sbjct: 79 VFNYLGIYLTQA----GNFDAAYEAFDSVLELDPTYNYAHL------------------- 115
Query: 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP-DANKACNLSHCLIKQARYTEARSV 204
N G A G A+ DP D ++ L K +
Sbjct: 116 --------NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVL 167
Query: 205 LEDVLL 210
+
Sbjct: 168 KQHFEK 173
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-05
Identities = 20/154 (12%), Positives = 40/154 (25%), Gaps = 33/154 (21%)
Query: 34 DPEAAIVLFWKAIN----AGDRVD--SALKDMAVVLKQQDRVDEAVE----AIKSFRHLC 83
+ A F +GD AL + +V + D A + L
Sbjct: 41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100
Query: 84 SKQAQE--SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141
+ + + G L + ++ L A+ +
Sbjct: 101 EDPLAASANAYE-VATVALHFGDLAGARQEYEKSLVY--------------AQQADDQVA 145
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175
+ + LG Q+ N A+ + +A
Sbjct: 146 I------ACAFRGLGDLAQQEKNLLEAQQHWLRA 173
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 19/144 (13%), Positives = 36/144 (25%), Gaps = 28/144 (19%)
Query: 74 EAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133
++ L +L +Y R DE + + A
Sbjct: 11 AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ--------------A 56
Query: 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA-----QLIDPDANKAC-- 186
+ G R L +G GN+ +A + + L + +
Sbjct: 57 QKSGDH------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110
Query: 187 -NLSHCLIKQARYTEARSVLEDVL 209
++ + AR E L
Sbjct: 111 YEVATVALHFGDLAGARQEYEKSL 134
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 21/175 (12%), Positives = 49/175 (28%), Gaps = 40/175 (22%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ E + + +++ +L+ + ++ A E IK +A E
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK--------KAIELFP 268
Query: 93 NVLI-----DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147
V + E + L++
Sbjct: 269 RVNSYIYMALIMADRNDSTEYYNYFDKALKL--------------------------DSN 302
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
S + + G NY A + KA+ +DP+ L+ ++ ++ +
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 17/187 (9%), Positives = 54/187 (28%), Gaps = 22/187 (11%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
++ + A F KA +A + ++++ D+ + + +
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP-- 375
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRM------IYH--GEAFNGKPTKTARSHGKKFQ--- 141
N ++ D+ ++ + + IY T + F
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435
Query: 142 ------VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD-ANKACNLSHCLIK 194
+ + + L +Q+ + A ++ ++ + K ++ +
Sbjct: 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA--E 493
Query: 195 QARYTEA 201
A+ +
Sbjct: 494 AAKVQQR 500
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEA 201
K + + L + G + + Y A Y A + D NLS C + +
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKV 58
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
NLG AY ++G+Y A Y+KA +DP+ +A NL + KQ Y EA
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEA 201
V+ SRI N+G Y N T AE + ++ D A + +Y A
Sbjct: 32 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 6e-04
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 6/115 (5%)
Query: 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210
L N AY G + A A ++DP +KA L A Y A+ E +
Sbjct: 48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI- 106
Query: 211 GKLSGSTETKTINR-VKELLQELEPWQSI--PPSLTTKKSSLEDAFLEGLDDLMN 262
+ G+ + + R ++ +++E PP+ ++ G+ DL +
Sbjct: 107 -EAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSS 160
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.94 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.9 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.89 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.89 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.88 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.87 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.85 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.84 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.84 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.84 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.83 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.83 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.82 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.82 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.8 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.8 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.78 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.78 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.77 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.77 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.77 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.76 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.75 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.73 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.73 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.7 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.69 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.69 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.68 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.68 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.66 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.66 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.65 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.65 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.64 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.64 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.63 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.63 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.62 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.61 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.61 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.61 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.6 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.6 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.59 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.57 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.56 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.56 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.56 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.56 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.56 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.55 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.55 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.52 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.47 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.41 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.34 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.33 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.33 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.32 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.31 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.28 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.28 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.25 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.25 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.22 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.21 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.18 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.1 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.06 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 99.01 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.91 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.88 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.69 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.44 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.24 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.2 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.14 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.12 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.04 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.96 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.51 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.44 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.43 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.41 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 97.04 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.95 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.76 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.63 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.54 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.52 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.47 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.34 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.33 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.31 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.26 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.21 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.1 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.63 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.3 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.25 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.18 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.14 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.64 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.39 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.0 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.9 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.6 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 92.94 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.58 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.54 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.55 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 89.34 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.19 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.2 | |
| 3t5x_A | 203 | PCI domain-containing protein 2; PCI, mRNA nuclear | 81.09 |
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=175.11 Aligned_cols=185 Identities=19% Similarity=0.153 Sum_probs=160.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++ ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999999988 789999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 96 IDLYKKC-----------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 96 ~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
|.++... |++++|+..|+++++++|. ++.++..+|.++...|+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------------------------YAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcCC
Confidence 9999999 9999999999998887764 78888889999999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQEL 232 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 232 (287)
+++|+..|+++++++ +++..+ ++|.++..+|++++|+..|+++++. .+++...+......+...
T Consensus 134 ~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 134 RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHc
Confidence 999999999999888 776665 8899999999999999999999887 444544433433333333
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=168.76 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=159.1
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
.+++..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|+.. ..+..+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999887 788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|.++...++++.|...+.+++...|. ++.++..+|.++...|++++|+..|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~--------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV--------------------------YADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc--------------------------chHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 99999999999999999998877664 7899999999999999999999999999
Q ss_pred HhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 176 QLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.+|+++.++ ++|.++..+|++++|+..|+++++..
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999998887 89999999999999999999999873
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=174.75 Aligned_cols=174 Identities=17% Similarity=0.085 Sum_probs=151.3
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-----------DRVDEAVEA 75 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~ 75 (287)
.+.+++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..
T Consensus 27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 344688999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 76 IKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 76 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
|+++++.+|+++ .++..+|.++...|++++|+..|+++++++ . ++.++..+
T Consensus 107 ~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--------------------------~~~~~~~l 157 (217)
T 2pl2_A 107 LKDAERVNPRYA--PLHLQRGLVYALLGERDKAEASLKQALALE-D--------------------------TPEIRSAL 157 (217)
T ss_dssp HHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--------------------------CHHHHHHH
T ss_pred HHHHHHhCcccH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--------------------------chHHHHHH
Confidence 999999999988 789999999999999999999999998875 3 78999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
|.++...|++++|+..|+++++.+|+++..+ ++|.++..+|++++|+..|+++-
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999998886 89999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=198.89 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=162.6
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|++++++..+|.++...|++++|+..|+++++.+|++..++.++|.+|...|++++|+..|+++++++|++. .++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+|.+|...|++++|++.|+++++++|. ++.+++++|.+|...|++++|+..|
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--------------------------~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPA--------------------------FADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999998887664 8999999999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+++++++|++..++ ++|.++..+|++++|.+.++++++..
T Consensus 135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999998886 99999999999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-24 Score=178.39 Aligned_cols=223 Identities=15% Similarity=0.095 Sum_probs=187.6
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
..+.+++...|++..++..+|.++...|++++|+..|++++..+|+.+.++..+|.++...|++++|+..|+++++.+|+
T Consensus 122 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
+. ..+..+|.++...|++++|+..|++++...|.. ..+ ....++.+...+++ ++..+|+++.++..+|
T Consensus 202 ~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 202 FL--DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR-AIELQPHFPDAYCNLA 278 (388)
T ss_dssp CH--HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCSSCHHHHHHHH
T ss_pred cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHH
Confidence 77 788889999999999999999999999988842 222 24467778888887 7888999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
.++...|++++|+..|+++++..|++...+ ++|.++...|++++|+..++++++.. ++....+......+...+.
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999987776 89999999999999999999999873 3444444444444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-24 Score=175.34 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=182.4
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++. .++..+|
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999887 7899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhh------------------h-cCCChhHHHHHHHHHhhhcCCC--cHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEA------------------F-NGKPTKTARSHGKKFQVTVKQE--TSRILGNL 155 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~-~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 155 (287)
.+|...|++++|+..|+++++..|.... + ....+..+...+++ ++...|+ ++.++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE-AAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH-HHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH-HHHhCcCccCHHHHHHH
Confidence 9999999999999999999999885221 1 11236778888877 7888998 89999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
|.++...|++++|+..|++++...|+++..+ ++|.++...|++++|+..|+++++.. +.....+......+...+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHCC
Confidence 9999999999999999999999999998887 89999999999999999999999974 344444344444443333
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=175.55 Aligned_cols=203 Identities=17% Similarity=0.164 Sum_probs=187.1
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.+++...|++..++..+|.++...|++++|+..|++++..+|+...++..+|.++...|++++|+..|++++..+|++
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 34468889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
. ..+..+|.++...|++++|+..|+++++.+|.. ..+ ....++.+...+++ ++..+|+++.++..+|.
T Consensus 169 ~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 A--VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-ALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp H--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcCCHHHHHHHHH
Confidence 7 789999999999999999999999999998842 233 24467788888887 78999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++...|++++|+..|++++..+|+++..+ ++|.++...|++++|+..|+++++..
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998886 89999999999999999999999874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=177.64 Aligned_cols=206 Identities=19% Similarity=0.129 Sum_probs=176.7
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-+.+++...|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.+|...|++++|+..+++++...|++
T Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (365)
T 4eqf_A 87 FMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY 166 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch---hhh-------h-cCCChhHHHHHHHHHhhhcCCC
Q 023081 87 AQ--------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH---GEA-------F-NGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 87 ~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~-------~-~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
.. ..+...++.++...|++++|+..|+++++..|. ... + ....+..|...+++ ++...|+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~ 245 (365)
T 4eqf_A 167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA-ALTVRPE 245 (365)
T ss_dssp HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTT
T ss_pred hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCC
Confidence 51 112334589999999999999999999999885 122 2 23457788888887 7889999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
++.+|..+|.++...|++++|+..|++++..+|++...+ ++|.++..+|++++|+..|+++++..+
T Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999998876 899999999999999999999998863
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=161.94 Aligned_cols=177 Identities=13% Similarity=0.068 Sum_probs=157.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD-RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
.|.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..+++++..+|++. .++.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~ 80 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA--NAYI 80 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH--HHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH--HHHH
Confidence 356779999999999999999999999999999998 8889999999999999999999999999999999987 7899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
.+|.+|...|++++|+..|+++++..|.... .. .....++..+|.++...|++++|+..|+
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNAT-----------IE--------KLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------HH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-----------HH--------HHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999998874110 00 0013679999999999999999999999
Q ss_pred HHHhhCCC--chHHH-HHHHHHHhccCH---------------------------HHHHHHHHHHHhcc
Q 023081 174 KAQLIDPD--ANKAC-NLSHCLIKQARY---------------------------TEARSVLEDVLLGK 212 (287)
Q Consensus 174 ~al~~~~~--~~~~~-~l~~~~~~~g~~---------------------------~~A~~~~~~~l~~~ 212 (287)
++++.+|+ +...+ ++|.++...|+. ++|+.+|+++++..
T Consensus 142 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 142 HATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999 87776 899999999888 88999999999873
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=175.84 Aligned_cols=196 Identities=13% Similarity=0.030 Sum_probs=145.3
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhhhH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR-VDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~ 88 (287)
..|...|++..++..+|.++...|++++|+..|++++..+|++..+|..+|.++...|+ +++|+..|++++.++|++.
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~- 166 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY- 166 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-
Confidence 34566777777888888888778888888888888888888888888888888888885 8888888888888888776
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
.+++.+|.++...|++++|+..|+++++++|.. .++ ....++.+...+++ ++..+|++..+|+++|.++
T Consensus 167 -~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~-al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 167 -QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ-LLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp -HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHH
Confidence 677777888888888888888888888877732 112 12245566666666 6777888888888888888
Q ss_pred HH-cCCHHHH-----HHHHHHHHhhCCCchHHH-HHHHHHHhcc--CHHHHHHHHHHH
Q 023081 160 MQ-KGNYTSA-----EVVYRKAQLIDPDANKAC-NLSHCLIKQA--RYTEARSVLEDV 208 (287)
Q Consensus 160 ~~-~g~~~~A-----~~~~~~al~~~~~~~~~~-~l~~~~~~~g--~~~~A~~~~~~~ 208 (287)
.. .|.+++| +.+|++++.++|++..+| ++|.++...| ++++|+..++++
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77 4554666 477888888888877776 6777777766 577777777766
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-23 Score=166.24 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=155.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+++...|.+...+..++.++...|++++|+..+++++..+|.++.++..+|.++...| ++++|+.++++++..+|+++
T Consensus 46 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 125 (330)
T 3hym_B 46 SVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125 (330)
T ss_dssp HHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH
Confidence 34677788888888888888888888888888888888888888888888888888888 88888888888888888766
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
..+..+|.++...|++++|+..|+++++..|. +..+ .....+.+...+++ ++...|+++.++..+|.+
T Consensus 126 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 126 --PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ-ALSIAPEDPFVMHEVGVV 202 (330)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCCCChHHHHHHHHH
Confidence 67778888888888888888888888887763 2222 24456777777776 677778888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhC---------CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 159 YMQKGNYTSAEVVYRKAQLID---------PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~---------~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+...|++++|+..+++++... |.....+ .+|.++...|++++|+..++++++..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 888888888888888888765 3344444 78888888888888888888888763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=162.53 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=182.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-----HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-----QESLD 92 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~ 92 (287)
.+..++.+|.++...|++++|+..|++++..+ .++.++..+|.++...|++++|+..++++++..|+.. ...++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 8889999999999999999999999999999998751 12688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
..+|.++...|++++|+..|++++.+.|.+..+ .....+.+...++. .+..+|.++.++..+|.++...|++++|+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA-EAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH-HHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999877666 33356667777776 6778898999999999999999999999999
Q ss_pred HHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 172 YRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 172 ~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
|++++..+|.++..+ .+|.++...|++++|+..++++++. .+.....+......+...+.
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhh
Confidence 999999999998776 8999999999999999999999987 34444444444555544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=177.22 Aligned_cols=166 Identities=9% Similarity=0.026 Sum_probs=148.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccchh
Q 023081 44 KAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR-LDEQIELLKQKLRMIYHG 122 (287)
Q Consensus 44 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~ 122 (287)
.++..+|++..++..+|.++...|++++|+..+++++.++|++. .+++.+|.++...|+ +++|+..|+++++++|..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~--~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH--HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 35677888999999999999999999999999999999999988 899999999999997 999999999999999942
Q ss_pred --------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 123 --------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 123 --------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
.++ ....+..+...+++ ++.++|++..+|+++|.++...|++++|+.+|++++.++|++..+| ++|.++
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~k-al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIAD-ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 222 22356778888887 8999999999999999999999999999999999999999999887 899999
Q ss_pred Hh-ccCHHHH-----HHHHHHHHhcc
Q 023081 193 IK-QARYTEA-----RSVLEDVLLGK 212 (287)
Q Consensus 193 ~~-~g~~~~A-----~~~~~~~l~~~ 212 (287)
.. .|..++| +.+|++++...
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 99 5555788 58999999984
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=166.76 Aligned_cols=199 Identities=15% Similarity=0.093 Sum_probs=177.1
Q ss_pred HhhcCCCC----chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 11 VVHKLPPG----DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 11 ~l~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
++...|++ ...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 52 a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 52 GYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 44455554 56799999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC------------------------CChhHHHHHHHHHhh
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG------------------------KPTKTARSHGKKFQV 142 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------~~~~~a~~~~~~~~~ 142 (287)
. .++..+|.+|...|++++|+..|++++...|....... ..+..+...+++ ++
T Consensus 132 ~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~ 208 (368)
T 1fch_A 132 Q--TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA-AV 208 (368)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHH-HH
Confidence 7 78999999999999999999999999999885333211 124566666666 68
Q ss_pred hcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 143 TVKQE--TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 143 ~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...|. ++.++..+|.++...|++++|+..|++++..+|+++..+ ++|.++...|++++|+..|+++++..
T Consensus 209 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 209 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88898 899999999999999999999999999999999998776 89999999999999999999999873
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-22 Score=163.21 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=92.1
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
+...|+++..++.+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++ .+
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~ 92 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP--VS 92 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HH
Confidence 3344444445555555555555555555555555555555444444455555555555555555555555554444 34
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 92 DNVLIDLYKKCG-RLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 92 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
+..+|.++...| ++++|+..|+++++..|.. ..+ ....+..+...+++ ++...|++..++..+|.++..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT-AAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhccccHHHHHHHHHHHHH
Confidence 444455555555 4555555555555444421 111 11233444444444 344444444444445555555
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|++++|+..+++++...|+++..+ .+|.++...|++++|+..++++++.
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5555555555555555555444443 4555555555555555555554443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=172.00 Aligned_cols=204 Identities=14% Similarity=0.043 Sum_probs=179.5
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
..+..++..+|+++..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|+
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh----h-------------------h-cCCChhHHHHHHHHHh
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----A-------------------F-NGKPTKTARSHGKKFQ 141 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~-------------------~-~~~~~~~a~~~~~~~~ 141 (287)
+. .++..+|.+|...|++++|+..|+++++..|... . + ....+..+...++. .
T Consensus 93 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~ 169 (450)
T 2y4t_A 93 FT--AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK-I 169 (450)
T ss_dssp CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-H
T ss_pred cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-H
Confidence 87 7899999999999999999999999999988543 1 1 23356777777777 6
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+...|.++.++..+|.+|...|++++|+..|++++..+|+++..+ .+|.++...|++++|+..|++++...
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999999999999999999999998886 89999999999999999999999874
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=156.30 Aligned_cols=191 Identities=16% Similarity=0.092 Sum_probs=117.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++. .++..+|.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555444 445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
+...|++++|+..++++++..|. +..+ ....++.+...+++ ++...|+++.++..+|.++...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR-AVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555555442 1111 12234444444444 45555668899999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+++++...|++...+ .+|.++..+|++++|...++++++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999988776 89999999999999999999999873
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-22 Score=164.74 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=180.4
Q ss_pred hhhHhhcCC---CCchHHHHh------------HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 023081 8 PYHVVHKLP---PGDSPYVRA------------KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 8 ~~~~l~~~p---~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 72 (287)
+.+++...| ++..++..+ |.++...|++++|+..|++++...|.++.++..+|.++...|++++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 345777788 888888777 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------------------hh-cCCChh
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------------------AF-NGKPTK 131 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------~~-~~~~~~ 131 (287)
+..+++++...|+++ ..+..+|.++...|++++|+..|+++++..|... .+ ....+.
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 174 ISDLKAASKLKSDNT--EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHHHHHHHTTCSCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999887 7899999999999999999999999999888422 12 345677
Q ss_pred HHHHHHHHHhhhcCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHH
Q 023081 132 TARSHGKKFQVTVKQETSR----ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 206 (287)
.+...++. .+...|+++. ++..+|.++...|++++|+..|++++..+|+++..+ .+|.++...|++++|...|+
T Consensus 252 ~A~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 252 DATSKYES-VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHHHHH-HHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888887 6778888764 466799999999999999999999999999998876 89999999999999999999
Q ss_pred HHHhccc
Q 023081 207 DVLLGKL 213 (287)
Q Consensus 207 ~~l~~~~ 213 (287)
++++..+
T Consensus 331 ~a~~~~p 337 (359)
T 3ieg_A 331 AAQEHNE 337 (359)
T ss_dssp HHHTTCT
T ss_pred HHHhcCC
Confidence 9999843
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=166.82 Aligned_cols=226 Identities=16% Similarity=0.115 Sum_probs=189.2
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+++...|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++.
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred HHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHhccch---hhh-------h-cCCChhHHHHHHHHHhh
Q 023081 88 QESLDN--------------VLIDLYKKCGRLDEQIELLKQKLRMIYH---GEA-------F-NGKPTKTARSHGKKFQV 142 (287)
Q Consensus 88 ~~~~~~--------------~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~-------~-~~~~~~~a~~~~~~~~~ 142 (287)
...... .++.++ ..|++++|+..|+++++..|. ... + ....++.+...+++ ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al 244 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-AL 244 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Confidence 211111 456666 889999999999999999886 222 2 24467888888887 78
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCC-----
Q 023081 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGS----- 216 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~----- 216 (287)
...|+++.++..+|.++...|++++|+..|++++..+|++...+ ++|.++..+|++++|+..|+++++..+...
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 88999999999999999999999999999999999999998776 899999999999999999999998754331
Q ss_pred ---CchhHHHHHHHHHHhcccc
Q 023081 217 ---TETKTINRVKELLQELEPW 235 (287)
Q Consensus 217 ---~~~~~~~~~~~~l~~l~~~ 235 (287)
.....+......+..++..
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCG
T ss_pred ccchhhHHHHHHHHHHHHhCCh
Confidence 1134444445555555543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-22 Score=168.92 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=178.8
Q ss_pred hhhHhhcCCCCc---hHHHHh------------HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 023081 8 PYHVVHKLPPGD---SPYVRA------------KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 8 ~~~~l~~~p~~~---~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 72 (287)
+.+++...|++. .++..+ |..+...|++++|+..|++++...|.++.++..+|.+|...|++++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 345777888877 665555 66799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------------------hh-cCCChh
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------------------AF-NGKPTK 131 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------~~-~~~~~~ 131 (287)
+..|++++..+|+++ ..+..+|.+|...|++++|+..|++++...|... .+ ....+.
T Consensus 197 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (450)
T 2y4t_A 197 ISDLKAASKLKNDNT--EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274 (450)
T ss_dssp HHHHHHHHHHHCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999887 7899999999999999999999999999888422 22 234567
Q ss_pred HHHHHHHHHhhhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHH
Q 023081 132 TARSHGKKFQVTVKQETS----RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 206 (287)
.+...++. ++...|+++ .++..+|.++...|++++|+..+++++..+|+++..+ .+|.++...|++++|+..|+
T Consensus 275 ~A~~~~~~-~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 275 DATSKYES-VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHH-HHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78888777 677888874 4789999999999999999999999999999998886 89999999999999999999
Q ss_pred HHHhccc
Q 023081 207 DVLLGKL 213 (287)
Q Consensus 207 ~~l~~~~ 213 (287)
++++..+
T Consensus 354 ~al~~~p 360 (450)
T 2y4t_A 354 TAQEHNE 360 (450)
T ss_dssp HHHTTSS
T ss_pred HHHHhCc
Confidence 9999843
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=158.03 Aligned_cols=213 Identities=15% Similarity=0.056 Sum_probs=167.9
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-H
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-Q 88 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~ 88 (287)
...|+++..++.+|..++..|++++|+..|++++...|++ +.+++.+|.++...|++++|+..|+++++..|+++ .
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4578889999999999999999999999999999999998 89999999999999999999999999999988543 2
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKK--------CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 89 ~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..++..+|.++.. .|++++|+..|+++++.+|..... ..+...+ ....+.....++.+|.+|.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~a~~~~----~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV-----DDATQKI----RELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH-----HHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH-----HHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 2578899999999 999999999999999998852210 0111100 1111123455789999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhc----------cCHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQ----------ARYTEARSVLEDVLLGKLSGSTETKTINRVK 226 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~----------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 226 (287)
..|++++|+..|++++...|+++ ..+ .+|.++..+ |++++|+..|+++++..+.++..........
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999853 344 899999877 9999999999999998644333333333344
Q ss_pred HHHHhccc
Q 023081 227 ELLQELEP 234 (287)
Q Consensus 227 ~~l~~l~~ 234 (287)
.....++.
T Consensus 240 ~~~~~~~~ 247 (261)
T 3qky_A 240 RARQRLTE 247 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=161.64 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=173.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
+++.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|++. .++..+|.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT--AARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999999877 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccc---hh--------------------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIY---HG--------------------EAF-NGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~---~~--------------------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
++...|++++|+..|+++++..| .. ..+ ....++.+...++. .+...|+++.++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK-ILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCchHHHH
Confidence 99999999999999999999888 31 222 24457778888777 6888999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
.+|.++...|++++|+..+++++...|+++..+ .+|.++...|++++|+..++++++..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999998886 899999999999999999999998743
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-23 Score=174.73 Aligned_cols=190 Identities=16% Similarity=0.082 Sum_probs=137.2
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDP-EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.....|+++..++.+|.++...|++ ++|+..|+++++.+|+++.++..+|.+|...|++++|+.+|+++++.+|+ .
T Consensus 94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-- 170 (474)
T 4abn_A 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-- 170 (474)
T ss_dssp HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--
T ss_pred HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--
Confidence 4556788999999999999999999 99999999999999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhccchh--------hhh-cC--------CChhHHHHHHHHHhhh
Q 023081 90 SLDNVLIDLYKKC---------GRLDEQIELLKQKLRMIYHG--------EAF-NG--------KPTKTARSHGKKFQVT 143 (287)
Q Consensus 90 ~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~--------~~~-~~--------~~~~~a~~~~~~~~~~ 143 (287)
.++..+|.++... |++++|+..|+++++++|.. .++ .. ..++.|...+++ ++.
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~-al~ 249 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ-AEK 249 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH-HHH
Confidence 6899999999999 99999999999999887741 111 00 123333333333 344
Q ss_pred cCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHH
Q 023081 144 VKQ---ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSV 204 (287)
Q Consensus 144 ~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~ 204 (287)
.+| +++.+|+++|.+|...|++++|+..|+++++++|++...+ .++.++..+|++++|+..
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4455555555555555555555555555555555544443 455555555544444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-22 Score=158.97 Aligned_cols=203 Identities=11% Similarity=-0.002 Sum_probs=174.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--DRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
-+.++++..|++..+++.+|.++...|++++|+..|++++... +.. ..++..+|.++...|++++|+.+|+++++.+
T Consensus 25 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 104 (272)
T 3u4t_A 25 VFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104 (272)
T ss_dssp HHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 3445788899999999999999999999999999999999833 222 4568999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------h-hhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------G-EAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
|++. .++..+|.+|...|++++|+..|+++++..|. + ..+....++.|...+++ ++...|+++.++..
T Consensus 105 ~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~ 181 (272)
T 3u4t_A 105 TTRL--DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK-VLELKPNIYIGYLW 181 (272)
T ss_dssp TTCT--HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHH
T ss_pred cccH--HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCccchHHHHH
Confidence 9887 78999999999999999999999999998873 3 33444577888888887 78899999999999
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHhhC---CCc-----hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 155 LGWAYMQKGN---YTSAEVVYRKAQLID---PDA-----NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 155 lg~~~~~~g~---~~~A~~~~~~al~~~---~~~-----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|.++...|+ +++|+..|++++... |+. ...+ .+|.++...|++++|+.+|+++++..
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999876 432 1233 79999999999999999999999983
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-22 Score=160.92 Aligned_cols=196 Identities=17% Similarity=0.155 Sum_probs=166.7
Q ss_pred cCC-CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 14 KLP-PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 14 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
.+| .+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++. ..+
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~ 92 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVH 92 (327)
T ss_dssp SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHH
Confidence 344 35677899999999999999999999999999999999999999999999999999999999999999877 788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---c--------------C-------CChhHHHHHHHHHhhhcCCCc
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF---N--------------G-------KPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~--------------~-------~~~~~a~~~~~~~~~~~~~~~ 148 (287)
..+|.++...|++++|+..++++++..|..... . + ...+.+...++. .+...|++
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~ 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA-ALEMNPND 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH-HHHHSTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH-HHhhCCCC
Confidence 889999999999999999999999988742211 0 1 124566666666 67788888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.++..+|.++...|++++|+..+++++..+|++...+ .+|.++...|++++|+..++++++..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999988887776 88999999999999999999988874
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-21 Score=148.18 Aligned_cols=195 Identities=12% Similarity=0.005 Sum_probs=145.9
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|+++..++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|++. ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999877 7888
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHh--ccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 94 VLIDLYKKC-GRLDEQIELLKQKLR--MIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 94 ~l~~~~~~~-g~~~~A~~~~~~al~--~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
.+|.++... |++++|+..++++++ ..|. +..+ .....+.+...++. .+...|.++.++..+|.++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR-SLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCchHHHHHHHHHHH
Confidence 999999999 999999999999998 3331 1111 12334455555554 455555556666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCC-CchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 162 KGNYTSAEVVYRKAQLIDP-DANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~-~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|++++|+..+++++...| ++...+ .++.++...|+.++|..+++.+.+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666666666666666655 554443 4555555566666666665555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-22 Score=155.10 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=154.8
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-------DSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.+++... +++.+++.+|.++...|++++|+..|++++...|.. +.++..+|.++...|++++|+.++++++.
T Consensus 29 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 29 NKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3566777 889999999999999999999999999999988776 78999999999999999999999999999
Q ss_pred hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
..|.. .++...|++++|+..+++++...|. +..+ ....++.+...+++ ++...|.++.++
T Consensus 108 ~~~~~----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~ 176 (258)
T 3uq3_A 108 EHRTA----------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE-MIKRAPEDARGY 176 (258)
T ss_dssp HCCCH----------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred cCchh----------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCcccHHHH
Confidence 66542 1233335555555555555555542 1111 12334455555554 455566689999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+|.++...|++++|+..|++++..+|+++..+ .+|.++..+|++++|+..|+++++..
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998876 89999999999999999999999874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=151.69 Aligned_cols=197 Identities=15% Similarity=0.028 Sum_probs=171.0
Q ss_pred hcCCCC-chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 13 HKLPPG-DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 13 ~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
..+|+. +..++.+|.++...|++++|+..|++++..+|..+.++..+|.++...|++++|+..++++++..|.+. .+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~ 107 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--RV 107 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HH
Confidence 345655 788999999999999999999999999999999999999999999999999999999999999999877 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--ccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR--MIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
+..+|.++...|++++|+..|++++. ..|. +..+ .....+.+...+++ ++...|.++.++..+|.++.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK-SLRLNRNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcccHHHHHHHHHHHH
Confidence 89999999999999999999999999 5552 1222 24456777777777 67788888999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|++++|+..+++++...|++...+ .++.++...|++++|..+++++++..
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999888887765 78899999999999999999998873
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-21 Score=156.13 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=177.7
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+-+++...|++..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+.
T Consensus 44 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 123 (327)
T 3cv0_A 44 FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 123 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred HHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhh
Q 023081 88 QESLDNVL--------------ID-LYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVT 143 (287)
Q Consensus 88 ~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~ 143 (287)
..+..+ +. ++...|++++|+..++++++..|. +..+ .....+.+...+++ ++.
T Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~ 200 (327)
T 3cv0_A 124 --QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR-AVE 200 (327)
T ss_dssp --TC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHH
T ss_pred --HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHH
Confidence 344433 44 577889999999999999999874 2222 34567888888887 788
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|+++.++..+|.++...|++++|+..|++++...|++...+ .+|.++..+|++++|+..++++++..
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 201 LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999998776 89999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-21 Score=169.16 Aligned_cols=199 Identities=13% Similarity=0.073 Sum_probs=123.3
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++...|++..++..++.++...|++++|+..+++++...|+++.++..+|.+|...|++++|+.+|+++++..|++.
T Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 407 (597)
T 2xpi_A 330 KILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG-- 407 (597)
T ss_dssp HHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred HHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--
Confidence 355556666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..+..++.+|...|++++|++.|+++++..|.. ..+ .....+.+...++. .+...|.++.+|..+|.++.
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS-SYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHH
Confidence 456666666666666666666666666665521 111 12245555555555 45556666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhh------CCCc-hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 161 QKGNYTSAEVVYRKAQLI------DPDA-NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~------~~~~-~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|++++|+..|+++++. +|+. ...+ .+|.++...|++++|+..|+++++.
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666665 3332 2333 5666666666666666666666655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=152.22 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=146.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKD----------------MAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
+.+.++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
.+|+++ .++..+|.++...|++++|+..|+++++++|. ++.+++++|.+|..
T Consensus 83 ~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 83 KAPNNV--DCLEACAEMQVCRGQEKDALRMYEKILQLEAD--------------------------NLAANIFLGNYYYL 134 (208)
T ss_dssp HCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHH
T ss_pred HCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------------CHHHHHHHHHHHHH
Confidence 999988 88999999999999999999999998888764 89999999999987
Q ss_pred cCC--HHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 162 KGN--YTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 162 ~g~--~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.|+ ...+...+++++...|.....+++|.++..+|++++|+..|+++++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 764 456677888776433322233488999999999999999999999985
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-21 Score=150.85 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=149.7
Q ss_pred cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh----
Q 023081 48 AGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG---- 122 (287)
Q Consensus 48 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---- 122 (287)
.+|.. +.++..+|.++...|++++|+..+++++...|++. .++..+|.++...|++++|+..|+++++..|..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA--DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 45554 78899999999999999999999999999999887 789999999999999999999999999998732
Q ss_pred ----hhh-cCCChhHHHHHHHHHhhh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 123 ----EAF-NGKPTKTARSHGKKFQVT--VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 123 ----~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
..+ ....++.+...+++ .+. ..|.++.++..+|.++...|++++|+.+|++++...|.+...+ .+|.++..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLE-ASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 222 34467888888887 566 6788899999999999999999999999999999999987776 89999999
Q ss_pred ccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHh
Q 023081 195 QARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQE 231 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 231 (287)
+|++++|...++++++.. +.....+.........
T Consensus 188 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG---GQNARSLLLGIRLAKV 221 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHH
Confidence 999999999999999873 3444333333333333
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=144.18 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=156.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
....++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|++. .++..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999999877 78889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
++...|++++|+..+++++...|. ++.++..+|.++...|++++|+.++++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI--------------------------NFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH--------------------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 999999999999999998877654 788899999999999999999999999999
Q ss_pred hCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 178 IDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|+++..+ .+|.++...|++++|..+++++++..+
T Consensus 139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999997776 899999999999999999999998753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=147.24 Aligned_cols=146 Identities=10% Similarity=0.028 Sum_probs=129.8
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 103 (287)
.||.++..+|++++|+..+++++..+|+.+..++.+|.+|...|++++|+.+|+++++++|+++ .++..+|.+|...|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcC
Confidence 4788889999999999999999999999989999999999999999999999999999999988 89999999999999
Q ss_pred CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCc
Q 023081 104 RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV-YRKAQLIDPDA 182 (287)
Q Consensus 104 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~~~~ 182 (287)
++++|+..|+++++++|. ++.+++.+|.++...|++++|... ++++++++|++
T Consensus 80 ~~~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT--------------------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 999999999998887664 899999999999999999887765 59999999999
Q ss_pred hHHH-HHHHHHHhccC
Q 023081 183 NKAC-NLSHCLIKQAR 197 (287)
Q Consensus 183 ~~~~-~l~~~~~~~g~ 197 (287)
+.++ ..+.++...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9887 67888887775
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-20 Score=164.08 Aligned_cols=194 Identities=12% Similarity=-0.016 Sum_probs=157.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.+...+..+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++...|++. ..+..+
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l 379 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA--VTWLAV 379 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH--HHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH--HHHHHH
Confidence 667888888888888888888888888888888888888888888888888888888888888888888776 677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhh-h-------h-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGE-A-------F-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+.+|...|++++|+..|+++++..|... . + .....+.|...+++ .+...|+++.++..+|.+|...|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT-AARLFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHcCCHH
Confidence 8888888888888888888888776422 2 2 23356677777776 56778888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|+..|++++...|+++..+ .+|.++...|++++|+..|+++++..
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 88888888888888887776 78888888888888888888888763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=169.54 Aligned_cols=164 Identities=13% Similarity=-0.003 Sum_probs=148.6
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ---------DRVDEAVEAIK 77 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~ 77 (287)
.+.++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+ ..++..+|.++... |++++|+..|+
T Consensus 125 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~ 203 (474)
T 4abn_A 125 LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH
Confidence 344688999999999999999999999999999999999999999 69999999999999 99999999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhccc---hh--------hhh-cCCChhHHHHHH
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKC--------GRLDEQIELLKQKLRMIY---HG--------EAF-NGKPTKTARSHG 137 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~---~~--------~~~-~~~~~~~a~~~~ 137 (287)
++++.+|++. .++..+|.+|... |++++|+..|+++++++| .. ..+ ....++.|...+
T Consensus 204 ~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 204 LAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCH--HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988 7899999999999 999999999999999988 32 222 244678888888
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
++ ++..+|+++.++..++.++...|++++|+..+.+
T Consensus 282 ~~-al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 282 SQ-AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HH-HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88 7999999999999999999999999999886654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=144.04 Aligned_cols=151 Identities=19% Similarity=0.125 Sum_probs=142.0
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
+.+.++++.+|+++.+++.+|.++...|++++|+..+.+++...|+.+.++..+|.++...++++.|...+.+++...|+
T Consensus 26 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 105 (184)
T 3vtx_A 26 RAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV 105 (184)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
+. .++..+|.+|...|++++|+..|+++++++|. ++.+++++|.+|...|++
T Consensus 106 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 106 YA--DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--------------------------FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCH
T ss_pred ch--HHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--------------------------hhhHHHHHHHHHHHCCCH
Confidence 87 78999999999999999999999998887664 899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchH
Q 023081 166 TSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~ 184 (287)
++|+..|+++++++|+++.
T Consensus 158 ~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhCCccCHH
Confidence 9999999999999997653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=151.67 Aligned_cols=190 Identities=15% Similarity=0.069 Sum_probs=166.2
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
.|....++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |++. .++
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~--~~~ 133 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL--ECM 133 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH--HHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH--HHH
Confidence 4555677788899999999999999999999876 599999999999999999999999999988 6666 688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhh------hh----c-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------AF----N-GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~----~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
..+|.++...|++++|+..|+++++..|... .+ . ...++.|...+++ .+...|+++.+++.+|.++..
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~-~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE-MADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHH
Confidence 8899999999999999999999999988532 22 1 2457778888887 678899999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH-HHHHHHHHHhcc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE-ARSVLEDVLLGK 212 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~-A~~~~~~~l~~~ 212 (287)
.|++++|+..|++++..+|+++..+ ++|.++..+|+..+ +..+++++++..
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887 99999999999976 568999999883
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-20 Score=159.80 Aligned_cols=208 Identities=15% Similarity=0.101 Sum_probs=177.3
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH-- 81 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-- 81 (287)
+...+-+++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+ ++.
T Consensus 44 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~ 122 (537)
T 3fp2_A 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLN 122 (537)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC
Confidence 33445568899999999999999999999999999999999999999999999999999999999999988763 332
Q ss_pred --------------------------------------------------------------------------------
Q 023081 82 -------------------------------------------------------------------------------- 81 (287)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (287)
T Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------hchhhh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---
Q 023081 82 ----------------------------LCSKQA-----QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--- 125 (287)
Q Consensus 82 ----------------------------~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 125 (287)
..|++. ...++..+|.++...|++++|+..|+++++..|....+
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 282 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHH
Confidence 222221 12346778889999999999999999999998863332
Q ss_pred -----cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHH
Q 023081 126 -----NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYT 199 (287)
Q Consensus 126 -----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~ 199 (287)
....+..+...+++ .+...|+++.++..+|.++...|++++|+..|++++..+|++...+ .+|.++...|+++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQK-AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHH-HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 23357888888887 7888999999999999999999999999999999999999998776 8999999999999
Q ss_pred HHHHHHHHHHhccc
Q 023081 200 EARSVLEDVLLGKL 213 (287)
Q Consensus 200 ~A~~~~~~~l~~~~ 213 (287)
+|+..++++++..+
T Consensus 362 ~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 362 ESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998843
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-21 Score=147.81 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GE 123 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~ 123 (287)
.+.+++.+|.++...|++++|+..|++++...|++. ..+..+|.++...|++++|+..|+++++..|. +.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 357789999999999999999999999999999887 78899999999999999999999999999873 22
Q ss_pred hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHH
Q 023081 124 AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 124 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A 201 (287)
.+ ....++.+...+++ .+...|.++.++..+|.++...|++++|+..+++++...|++...+ .+|.++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEK-ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHH-HHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 22 34567888888887 6888999999999999999999999999999999999999998776 899999999999999
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 202 RSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+..++++++.. +.+...+..........+
T Consensus 179 ~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 179 LSQFAAVTEQD---PGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC---cccHHHHHHHHHHHHHcc
Confidence 99999999873 344444444444444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=148.67 Aligned_cols=193 Identities=16% Similarity=0.099 Sum_probs=166.1
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVL 95 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l 95 (287)
+++.++..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|+++ ....+..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999 44332 12458899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
|.++...|++++|+..|+++++..|. +..+ ....++.|...+++ ++..+|.++.++..+|...+..++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK-QIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG-GCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH-HhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999884 2233 34567888888887 78889999999999995555566999
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccC---HHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR---YTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~---~~~A~~~~~~~l~~~ 212 (287)
+|+..|+++++..|++...+ .+|.++..+|+ +++|+..|+++++..
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999997775 89999999998 888999999999875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=150.98 Aligned_cols=209 Identities=7% Similarity=-0.040 Sum_probs=178.3
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHh-------hCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLV-------EKDP-------EAAIVLFWKAIN-AGDRVDSALKDMAVVLKQQDRVDE 71 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~ 71 (287)
.+-+++..+|+++.+|+.+|..+.. .|++ ++|+..|++++. .+|++..+|..+|.++...|++++
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 3446888899999999999999874 4886 999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh------hh----cCCChhHHHHHHHHH
Q 023081 72 AVEAIKSFRHLCSKQAQES-LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------AF----NGKPTKTARSHGKKF 140 (287)
Q Consensus 72 A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~----~~~~~~~a~~~~~~~ 140 (287)
|...|+++++..|.++ . ++..++.++...|++++|+..|+++++..|... +. .....+.+...+++
T Consensus 118 A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~- 194 (308)
T 2ond_A 118 VHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL- 194 (308)
T ss_dssp HHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHH-
T ss_pred HHHHHHHHHhccccCc--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 9999999999999876 4 788999999999999999999999999877321 11 13466778888877
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-chHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 141 QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI---DPD-ANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 141 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~-~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
++...|+++.+|..+|.++...|++++|...|++++.. .|+ ....| .++..+...|+.++|...++++++..+.+
T Consensus 195 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 78888999999999999999999999999999999985 444 45566 78888899999999999999999886544
Q ss_pred CCc
Q 023081 216 STE 218 (287)
Q Consensus 216 ~~~ 218 (287)
...
T Consensus 275 ~~~ 277 (308)
T 2ond_A 275 YEG 277 (308)
T ss_dssp TSS
T ss_pred ccc
Confidence 333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=150.07 Aligned_cols=193 Identities=10% Similarity=-0.056 Sum_probs=166.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|++. .++..+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l 117 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--HHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999887 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
|.+|...|++++|+..|+++++..|..... .......+...++. .+...|.+...+. ++.++...++.++
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ-HFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 999999999999999999999998853321 12245667777765 5666676655554 7778889999999
Q ss_pred HHHHHHHHHhhCCCc----hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDA----NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+..+++++...|.. ...+ .+|.++..+|++++|+..|+++++..
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999877653 3444 89999999999999999999999874
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-20 Score=142.40 Aligned_cols=189 Identities=11% Similarity=-0.005 Sum_probs=152.8
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~ 93 (287)
++..++.+|..+...|++++|+..|++++...|.. ..+++.+|.++...|++++|+..|+++++.+|++.. ..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788999999999999999999999999998876 478999999999999999999999999999998752 13577
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 94 VLIDLYKK------------------CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 94 ~l~~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
.+|.++.. .|++++|+..|+++++.+|..... ..+..... ............+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a-----~~a~~~l~----~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT-----TDATKRLV----FLKDRLAKYEYSV 153 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH-----HHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH-----HHHHHHHH----HHHHHHHHHHHHH
Confidence 78888776 579999999999999999853211 01111100 0011123445789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
|.+|...|++++|+..|+++++..|+++ .++ .+|.++..+|++++|+..++.+....+.+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999985 334 89999999999999999999988875433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=142.59 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=140.9
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
+|...+.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...| ++ .....
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~~ 78 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKSL 78 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHHH
Confidence 5677788999999999999999999999999999999999999999999999999999999999999998 55 33333
Q ss_pred HHHHH-HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 95 LIDLY-KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 95 l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
++.+. ...+...+|+..++++++.+| +++.+++.+|.++...|++++|+..|+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANP--------------------------DNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44332 222344456777777666655 489999999999999999999999999
Q ss_pred HHHhhCCCc--hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 174 KAQLIDPDA--NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 174 ~al~~~~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+++..+|+. +..+ ++|.++..+|+.++|+..|++++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999986 3455 8999999999999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=167.68 Aligned_cols=167 Identities=13% Similarity=-0.031 Sum_probs=128.9
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAI--------NAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
..+|+++.+++..| ...|++++|++.|++++ ..+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35788888888777 77899999999999999 88899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
++. .++..+|.++...|++++|+..|+++++++|. ++.+++++|.++...|+
T Consensus 465 ~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------------------~~~~~~~lg~~~~~~g~ 516 (681)
T 2pzi_A 465 WRW--RLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--------------------------ELAPKLALAATAELAGN 516 (681)
T ss_dssp CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--------------------------CSHHHHHHHHHHHHHTC
T ss_pred chH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHcCC
Confidence 887 78999999999999999999999999888774 45555555555555555
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+++ +..|+++++++|++..++ ++|.++..+|++++|+..|+++++.
T Consensus 517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 555 555555555555554443 5555555555555555555555544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-20 Score=159.14 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=175.2
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.+++...|+ ..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++
T Consensus 265 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 265 LLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 34457788888 89999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCc------HHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQET------SRI 151 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~ 151 (287)
. ..+..+|.++...|++++|+..++++++..|.. ..+ ....++.+...+++ ++...|++ ...
T Consensus 344 ~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 344 V--YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI-AKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp S--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCSSCSSTTHH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH-HHHcCCcchhhHHHHHH
Confidence 7 788899999999999999999999999988742 222 24467777777776 45554443 344
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 152 LGNLGWAYMQK----------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 152 ~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+..+|.++... |++++|+..|++++..+|++...+ .+|.++..+|++++|+..|+++++..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 67778999999 999999999999999999998876 89999999999999999999999984
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=158.44 Aligned_cols=201 Identities=15% Similarity=0.109 Sum_probs=170.2
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+++...|+ ..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++.
T Consensus 260 ~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 338 (514)
T 2gw1_A 260 IKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338 (514)
T ss_dssp HHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH
Confidence 3356777888 888888899988889999999999998888888888888899999999999999999999988888776
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHH------HH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSR------IL 152 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 152 (287)
..+..+|.++...|++++|+..++++++..|. +..+ ....++.+...++. ++...|+++. ++
T Consensus 339 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 339 --FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL-AIELENKLDGIYVGIAPL 415 (514)
T ss_dssp --HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTSSSCSSCSHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhhhccchHHHHHHHH
Confidence 67888888888889999999999988888773 2222 23456777777776 5666666544 99
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 153 GNLGWAYMQ---KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 153 ~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+|.++.. .|++++|+..|++++..+|+++..+ .+|.++...|++++|...|+++++..
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999999999999998876 89999999999999999999999984
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=148.47 Aligned_cols=171 Identities=13% Similarity=0.031 Sum_probs=154.4
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+.. ...
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR--YQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH--HHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH--HHH
Confidence 345888999999999999999999999999999999999999999999999999999999999999999999655 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
...+..+...++.++|+..++++++..|. ++.+++.+|.++...|++++|+..|
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~--------------------------~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPE--------------------------DAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHcccHHHHHHHH
Confidence 55566677888999999999987777664 8999999999999999999999999
Q ss_pred HHHHhhCCCc--hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 173 RKAQLIDPDA--NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 173 ~~al~~~~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+++..+|++ ..++ +++.++..+|+.++|...|++++..
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999998 5665 8999999999999999999998864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-20 Score=163.98 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=136.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
..|+++.++.+||.++..+|++++|+..|+++++++|++. .++..+|.+|..+|++++|+..|+++++++|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 4688899999999999999999999999999999999988 88999999999999999999999998887664
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHH
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 206 (287)
++.+++++|.++..+|++++|++.|+++++++|++..++ ++|.++..+|++++|+..|+
T Consensus 76 --------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 76 --------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999999999999999999998887 99999999999999999999
Q ss_pred HHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 207 DVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
++++.. +++...+......+..++
T Consensus 136 ~Al~l~---P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 136 TALKLK---PDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHC---SCCHHHHHHHHHHHHHTT
T ss_pred HHHHhC---CCChHHHhhhhhHHHhcc
Confidence 999984 444444444443443333
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=167.43 Aligned_cols=156 Identities=11% Similarity=-0.068 Sum_probs=144.6
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
..+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++. .++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~ 504 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--APK 504 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--HHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHH
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999988 789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+|.++...|++++ +..|+++++++|. ++.+++++|.++...|++++|+..|
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDG--------------------------VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCc--------------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999 9999998887764 8899999999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
+++++++|++..++ ++|.++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999998876 89999877665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=140.16 Aligned_cols=162 Identities=11% Similarity=0.019 Sum_probs=137.2
Q ss_pred chhhHhhcCC-CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLP-PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+.+++...| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|+
T Consensus 29 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 29 KYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 3445788888 888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 86 QAQE-----SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 86 ~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
++.. .++..+|.++...|++++|+..|++++++.|... ++.++..+|.++.
T Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------~~~~~~~l~~~~~ 164 (228)
T 4i17_A 109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW------------------------KTDALYSLGVLFY 164 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH------------------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc------------------------cHHHHHHHHHHHH
Confidence 6522 4688999999999999999999999988877400 2344555555555
Q ss_pred HcCCH---------------------------HHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 161 QKGNY---------------------------TSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 161 ~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
..|+. ++|+.+|+++++++|+++... .++.+.
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 55544 999999999999999998775 566554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-20 Score=157.41 Aligned_cols=211 Identities=12% Similarity=0.029 Sum_probs=182.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.+..+++.+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++...|++. .++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l 310 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHH
Confidence 455778999999999999999999999999999999 99999999999999999999999999999999887 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
|.++...|++++|+..|+++++..|.. ..+ ....++.+...++. .+...|+++.++..+|.++...|+++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE-AKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH-HHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999998842 222 23467888888887 68889999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCchH------HH-HHHHHHHh---ccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANK------AC-NLSHCLIK---QARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~------~~-~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+|+..|++++...|+++. .+ .+|.++.. .|++++|+..++++++.. +.....+......+...+
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhc
Confidence 999999999999888753 44 89999999 999999999999999873 344444444444444444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=145.49 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=158.9
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-- 83 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 83 (287)
..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45666788999999999999999999999999984 56667889999999999999999999999999874
Q ss_pred ------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------ch--------hhhh-cCCChhHHHHHHHHH
Q 023081 84 ------SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI--------YH--------GEAF-NGKPTKTARSHGKKF 140 (287)
Q Consensus 84 ------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~--------~~~~-~~~~~~~a~~~~~~~ 140 (287)
|... .++..+|.+|...|++++|+..|+++++.. +. +..+ ....++.+...+++
T Consensus 102 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~- 178 (311)
T 3nf1_A 102 TLGKDHPAVA--ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR- 178 (311)
T ss_dssp HHCTTCHHHH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-
T ss_pred HhCCCChHHH--HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 3334 678899999999999999999999999874 21 2222 23456777777776
Q ss_pred hhhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------------------
Q 023081 141 QVTV--------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID--------------------------------- 179 (287)
Q Consensus 141 ~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------- 179 (287)
++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 3443 55567788899999999999999999999988742
Q ss_pred ----------------CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 180 ----------------PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 180 ----------------~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|.....+ .+|.++..+|++++|..+|+++++..
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2233334 78999999999999999999988763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=134.11 Aligned_cols=144 Identities=12% Similarity=0.114 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
.||.++...|++++|+..+++++...|+++ ..+..+|.+|...|++++|+..|+++++++|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---------------- 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINVQER---------------- 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Confidence 478888999999999999999999999887 67889999999999999999999998887664
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHH-HHHHHhcccCC
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSV-LEDVLLGKLSG 215 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~-~~~~l~~~~~~ 215 (287)
++.+|..+|.+|...|++++|+..|+++++++|+++.++ ++|.++..+|++++|... ++++++. +
T Consensus 64 ----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~ 130 (150)
T 4ga2_A 64 ----------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---F 130 (150)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---S
T ss_pred ----------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---C
Confidence 899999999999999999999999999999999998886 899999999999887765 5899998 4
Q ss_pred CCchhHHHHHHHHHHhc
Q 023081 216 STETKTINRVKELLQEL 232 (287)
Q Consensus 216 ~~~~~~~~~~~~~l~~l 232 (287)
+.++..+.-...++...
T Consensus 131 P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp TTCHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55655544444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-17 Score=131.75 Aligned_cols=186 Identities=17% Similarity=0.139 Sum_probs=156.7
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
.|+++.+++.+|.++...|++++|+.+|+++++ |+++.++..+|.++.. .+++++|+.+|+++++.. ++ .
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~--~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--N 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--H
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH--H
Confidence 478889999999999999999999999999998 7778999999999999 999999999999999875 34 5
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhccc------hhhhh-c----CCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 91 LDNVLIDLYKK----CGRLDEQIELLKQKLRMIY------HGEAF-N----GKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 91 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~------~~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
.+..+|.+|.. .+++++|+.+|+++++... .+..+ . ....+.+...+++ ++... ++.++..+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~-a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK-ACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH-HHHTT--CHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHH-HHhcC--cHHHHHHH
Confidence 78889999999 9999999999999998753 23334 3 3467778877776 44443 68889999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 156 GWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 156 g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
|.+|.. .+++++|+.+|+++++.+ ++..+ ++|.++.. .+++++|+.+|+++++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 999998 999999999999999873 44454 89999999 99999999999999987
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=126.95 Aligned_cols=116 Identities=11% Similarity=0.081 Sum_probs=62.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
++|+.+.++..+|..++..|++++|+..|+++++.+|+++ .++..+|.+|...|++++|+..|+++++++|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------ 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------ 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------
Confidence 4455555555555555555555555555555555555544 45555555555555555555555554444332
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHH
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHC 191 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~ 191 (287)
++.+|+.+|.++...|++++|+..|+++++++|++..+. .|+.+
T Consensus 80 --------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 80 --------------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 455555555555555555555555555555555555443 44443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=126.81 Aligned_cols=109 Identities=10% Similarity=-0.035 Sum_probs=102.6
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+...+|+.+.++..+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|+++++++|+++ .
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--K 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--H
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
++..+|.+|...|++++|+..|+++++++|.
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999998888775
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-19 Score=139.51 Aligned_cols=193 Identities=15% Similarity=0.036 Sum_probs=155.2
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-+.+++...|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+++++++..|++
T Consensus 65 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 65 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh-------hc-CCChhHHHHHHHHHhhhcCC----CcHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-------FN-GKPTKTARSHGKKFQVTVKQ----ETSRILGN 154 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~-~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 154 (287)
. ...... .+....|++++|+..+++++...|.... +. ......+...++. .+...| .++.++..
T Consensus 145 ~--~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (275)
T 1xnf_A 145 P--FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA-DATDNTSLAEHLSETNFY 220 (275)
T ss_dssp H--HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHH-HCCSHHHHHHHHHHHHHH
T ss_pred h--HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHH-HhcccccccccccHHHHH
Confidence 6 222222 3446679999999999999998773211 11 2234556666555 344433 34789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVL 205 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 205 (287)
+|.++...|++++|+..|++++..+|++.. ..+.++..+|++++|+..+
T Consensus 221 la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 221 LGKYYLSLGDLDSATALFKLAVANNVHNFV--EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCTTCH--HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCchhHH--HHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999997743 3467888899999998877
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=140.78 Aligned_cols=177 Identities=18% Similarity=0.186 Sum_probs=148.2
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--- 83 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 83 (287)
.|....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3667788999999999999999999999999977 35557889999999999999999999999999883
Q ss_pred -----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 84 -----SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 84 -----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
|... .++..+|.+|...|++++|+.+|+++++..... .....|....++..+|.+
T Consensus 119 ~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 119 LGKFHPDVA--KQLNNLALLCQNQGKAEEVEYYYRRALEIYATR------------------LGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp HCTTCHHHH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHH
T ss_pred cCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHH
Confidence 5444 688999999999999999999999999873210 001123357789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-------------------------------------------------CCchHHH-HH
Q 023081 159 YMQKGNYTSAEVVYRKAQLID-------------------------------------------------PDANKAC-NL 188 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~-------------------------------------------------~~~~~~~-~l 188 (287)
+...|++++|+.++++++... |.....+ .+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999862 1122333 79
Q ss_pred HHHHHhccCHHHHHHHHHHHHhc
Q 023081 189 SHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 189 ~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|.++..+|++++|..+|+++++.
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999975
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=141.22 Aligned_cols=173 Identities=13% Similarity=0.017 Sum_probs=147.0
Q ss_pred chhhHhhcCCCC---chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH--------cCCHHHH
Q 023081 7 QPYHVVHKLPPG---DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQ--------QDRVDEA 72 (287)
Q Consensus 7 ~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~--------~g~~~~A 72 (287)
.+.+++...|++ +.+++.+|.++...|++++|+..|++++...|++ +.+++.+|.++.. .|++++|
T Consensus 37 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A 116 (261)
T 3qky_A 37 YFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKA 116 (261)
T ss_dssp HHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHH
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 445688889998 8899999999999999999999999999998754 6789999999999 9999999
Q ss_pred HHHHHHHHHhchhhhHH-HHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 73 VEAIKSFRHLCSKQAQE-SLD--------------NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~-~~~--------------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
+..|++++...|++... ... ..+|.+|...|++++|+..|+++++..|.
T Consensus 117 ~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------------- 180 (261)
T 3qky_A 117 IEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD---------------- 180 (261)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----------------
Confidence 99999999999976411 122 78899999999999999999999988773
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQK----------GNYTSAEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEAR 202 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~ 202 (287)
.+..+.+++.+|.+|... |++++|+..|++++...|+++... .++.++..+++++++.
T Consensus 181 -------~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 181 -------TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp -------STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -------CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 122467899999999977 999999999999999999986542 6777877777765543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=148.40 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=152.2
Q ss_pred chhhHhhcCCCCchHHHH------hHHhHHhhCCHHHHHHHHHHHHhcC---CC---CHHHHHHHHHHHHHcCCHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVR------AKHVQLVEKDPEAAIVLFWKAINAG---DR---VDSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~------lg~~~~~~~~~~~A~~~~~~al~~~---~~---~~~~~~~la~~~~~~g~~~~A~~ 74 (287)
+.++.++..|...+.+.. .|..+...|++++|+..|++++... ++ .+.++..+|.+|...|++++|+.
T Consensus 85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 164 (383)
T 3ulq_A 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666655554444 9999999999999999999999872 32 46789999999999999999999
Q ss_pred HHHHHHHhchhh-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcH
Q 023081 75 AIKSFRHLCSKQ-----AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETS 149 (287)
Q Consensus 75 ~~~~~~~~~p~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (287)
+++++++..+.. ....++..+|.+|...|++++|+..|++++++.+. ....+...
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~ 224 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA--------------------EKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------------------cCChHHHH
Confidence 999999985522 12357889999999999999999999999998652 11112245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C-CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLI-----D-PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.++.++|.+|...|++++|+.+|++++.+ + |.....+ ++|.++..+|++++|..+++++++..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999983 4 4444554 89999999999999999999999874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-19 Score=140.95 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=144.9
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDR------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QES 90 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~ 90 (287)
.+...|.++...|++++|+..|++++...+. .+.++.++|.+|...|++++|+.+|++++.+.|... ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677888999999999999999999987422 257899999999999999999999999999987531 125
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 91 LDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 91 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+..+|.+|... |++++|+.+|++++++.|.. ...+....++.++|.++...|++++|+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQD--------------------QSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--------------------CChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 788999999996 99999999999999987631 000012567889999999999999999
Q ss_pred HHHHHHHhhCCCchH-------H-HHHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 170 VVYRKAQLIDPDANK-------A-CNLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 170 ~~~~~al~~~~~~~~-------~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
.+|++++...|++.. . .++|.++..+|++++|+..|+++++..+
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999887643 2 3799999999999999999999998753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-17 Score=132.02 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=162.0
Q ss_pred CCCchHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhh
Q 023081 16 PPGDSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
|+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 7889999999999999 999999999999999885 78999999999999 999999999999999874 34
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccch------hhhh-c----CCChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 88 QESLDNVLIDLYKK----CGRLDEQIELLKQKLRMIYH------GEAF-N----GKPTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 88 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~------~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
..+..+|.+|.. .+++++|+.+|+++++..+. +..+ . ....+.+...+++ ++.. +++.++
T Consensus 111 --~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~-a~~~--~~~~a~ 185 (273)
T 1ouv_A 111 --EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDK-ACDL--KDSPGC 185 (273)
T ss_dssp --HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHT--TCHHHH
T ss_pred --cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHC--CCHHHH
Confidence 678899999999 99999999999999998752 3333 2 3467778887776 4443 568999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 153 GNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 153 ~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+.+|.+|.. .+++++|+.+|+++++.+| +.. +++|.++.. .+++++|+.+|+++++.
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999999999 9999999999999999865 444 489999999 99999999999999987
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=137.25 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=131.5
Q ss_pred chhhHhhcCCCCchHHHH----------------hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 023081 7 QPYHVVHKLPPGDSPYVR----------------AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVD 70 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~----------------lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 70 (287)
.+.+++..+|+++.+++. +|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 26 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 105 (208)
T 3urz_A 26 YFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105 (208)
T ss_dssp HHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Confidence 344688899999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCc
Q 023081 71 EAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR--LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (287)
+|+..|+++++++|+++ .++..+|.+|...|+ ...+...+.+++...| .
T Consensus 106 ~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~ 156 (208)
T 3urz_A 106 DALRMYEKILQLEADNL--AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---------------------------M 156 (208)
T ss_dssp HHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---------------------------H
T ss_pred HHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---------------------------h
Confidence 99999999999999988 789999999887764 3455666666554333 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHC 191 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~ 191 (287)
..+++.+|.++...|++++|+.+|+++++++|+......+..+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4467889999999999999999999999999986544344443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-18 Score=135.43 Aligned_cols=209 Identities=14% Similarity=0.052 Sum_probs=164.6
Q ss_pred cCCCC-chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHH
Q 023081 14 KLPPG-DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQES 90 (287)
Q Consensus 14 ~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 90 (287)
..|++ .+..+.+++.++..|+++.|+..++. .+|....++..++..+...|+.++|++.+++++.. +|+++ .
T Consensus 28 ~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~--~ 102 (291)
T 3mkr_A 28 SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT--T 102 (291)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH--H
T ss_pred CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH--H
Confidence 34544 35678899999999999999998865 25556788889999999999999999999999876 58887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----hhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHH--HHHHHc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIY-----HGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLG--WAYMQK 162 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg--~~~~~~ 162 (287)
++..+|.++...|++++|+..+++ ..++ .+..+ .....+.|...+++ .+..+|++.......+ .++...
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~-~~~~~p~~~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKK-MQDQDEDATLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhhCcCcHHHHHHHHHHHHHhCc
Confidence 899999999999999999999998 1111 12233 34567888888887 6777888765544444 334456
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
|++++|+..|++++...|+++..+ ++|.++..+|++++|...|+++++. ++++...+......+..++
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---DSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 899999999999999999998886 8999999999999999999999998 4555555444444444444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=141.46 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=158.0
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA---------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..+..|..+|.++...|++++|++.|++++++ +|....++.++|.+|...|++++|+.++++++.+.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34677888999999999999999999999875 567788899999999999999999999999998866321
Q ss_pred ------HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccchhhhh------------cCCChhHHHHHHHHHhhhcCCC
Q 023081 88 ------QESLDNVLIDLYKKC--GRLDEQIELLKQKLRMIYHGEAF------------NGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 88 ------~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
...++..+|..+... ++|++|+.+|+++++++|..... .......+...+++ ++.++|+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~-al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ-AIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH-HHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HhhcCCc
Confidence 124566666666554 57999999999999999853221 11223456666666 7899999
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 148 TSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 148 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
++.++..+|..+.. .|++++|...+++++..+|+....+ ++|.++...|++++|+..++++++..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 99999999887665 4678999999999999999998886 899999999999999999999998843
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=151.21 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=104.8
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++
T Consensus 11 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 11 QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90 (568)
T ss_dssp ----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 33456667777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc---C
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK---G 163 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g 163 (287)
. ..+..+|.+|...|++++|++.|+++++..|. ++.++..+|.++... |
T Consensus 91 ~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 91 P--GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--------------------------EPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCCT
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhhccc
Confidence 5 56777777777777777777777776666543 566777777777777 7
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++++|...++++++.+|+....+
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHH
T ss_pred cHHHHHHHHHHHHhcCCcccChH
Confidence 77777777777777777765444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=130.54 Aligned_cols=113 Identities=10% Similarity=0.010 Sum_probs=58.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++ .++..+|.+|...|++++|+..|+++++++|.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3444444555555555555555555555555555555555555544 44555555555555555555555554444332
Q ss_pred hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 122 GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
++.+|+++|.+|...|++++|+..|++++++.|+.
T Consensus 103 --------------------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 --------------------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp --------------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred --------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 44555555555555555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-18 Score=127.04 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=137.5
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
.+++...|++..+++.+|.++...|++++|+..+++++...|....++..+|.++...|++++|+.++++++...|++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~- 110 (186)
T 3as5_A 32 EQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF- 110 (186)
T ss_dssp TTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-
T ss_pred HHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH-
Confidence 3466778999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.++..+|.++...|++++|+..++++++..|. ++.++..+|.++...|++++|
T Consensus 111 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 111 -NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--------------------------EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--------------------------chHHHHHHHHHHHHcCCHHHH
Confidence 78899999999999999999999998877653 788999999999999999999
Q ss_pred HHHHHHHHhhCCCchH
Q 023081 169 EVVYRKAQLIDPDANK 184 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~ 184 (287)
..++++++...|++..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999999887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=144.51 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=111.3
Q ss_pred hHhhcCCCCc----hHHHHhHHhHHhhCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 10 HVVHKLPPGD----SPYVRAKHVQLVEKDPEAAIVLFWKAINA------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 10 ~~l~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
+++...|++. .+++.+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+++++
T Consensus 73 ~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 73 AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555554 35566666666666666666666666654 2344555666666666666666666666666
Q ss_pred HHhch------hhhHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhccc--------------hh
Q 023081 80 RHLCS------KQAQESLDNVLIDLYKKCGR-----------------LDEQIELLKQKLRMIY--------------HG 122 (287)
Q Consensus 80 ~~~~p------~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~~--------------~~ 122 (287)
+...+ ... .++..+|.+|...|+ +++|+.++++++++.+ .+
T Consensus 153 l~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 230 (411)
T 4a1s_A 153 LTLARQLGDRLSEG--RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230 (411)
T ss_dssp HHHHHHHTCHHHHH--HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHH--HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65522 222 455566666666666 6666666666655432 11
Q ss_pred hhh-cCCChhHHHHHHHHHhhhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------hHHH-HH
Q 023081 123 EAF-NGKPTKTARSHGKKFQVTVKQET------SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA------NKAC-NL 188 (287)
Q Consensus 123 ~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~-~l 188 (287)
..+ ....++.+..++++ ++...+.. ..++..+|.++...|++++|+.+|++++...+.. ...+ .+
T Consensus 231 ~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQE-RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 12334455555544 23322221 2356666666666666666666666666654432 1222 56
Q ss_pred HHHHHhccCHHHHHHHHHHHHhc
Q 023081 189 SHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 189 ~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|.++..+|++++|+.++++++..
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666666655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=137.78 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=158.2
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|+++..++.+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|++. .++..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 667889999999999999999999999999999999999999999999999999999999999999999987 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh------HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK------TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
|.+|...|++++|+..|++++++.|......+.... ....... ......|.++.+...++.++ .|++++|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999999999999854222111111 1111111 13445667777777777765 79999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhc-cCHHHHHHHHHHHHhc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQ-ARYTEARSVLEDVLLG 211 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~-g~~~~A~~~~~~~l~~ 211 (287)
+.++++++.+|++.... .++.++... +.+++|...|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999887664 677777665 7789999999988864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=126.08 Aligned_cols=176 Identities=13% Similarity=-0.080 Sum_probs=156.0
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hch
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-DRVDEAVEAIKSFRH--LCS 84 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~--~~p 84 (287)
+.+++...|++..+++.+|.++...|++++|+..|++++...|....++..+|.++... |++++|+..+++++. ..|
T Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (225)
T 2vq2_A 31 IEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP 110 (225)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence 44578889999999999999999999999999999999999999999999999999999 999999999999999 555
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCC-CcHHHHHH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQ-ETSRILGN 154 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 154 (287)
... .++..+|.++...|++++|+..++++++..|... .+ ....++.+...++. .+...| .++.++..
T Consensus 111 ~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~ 187 (225)
T 2vq2_A 111 TPY--IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK-YQSRVEVLQADDLLL 187 (225)
T ss_dssp CHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHCSCCHHHHHH
T ss_pred chH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCCHHHHHH
Confidence 555 6888999999999999999999999999988421 22 23456778888877 678888 89999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++.++...|++++|..+++.+....|+++...
T Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 188 GWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999987664
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-18 Score=144.94 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=163.3
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHh---hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLV---EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ----DRVDEAVEAIKSFR 80 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~ 80 (287)
+.++++.+|+++.++..+|.++.. .++.++|+..|+++++.+|+++.++..+|..+... |++++|+.++++++
T Consensus 161 ~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al 240 (472)
T 4g1t_A 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345788899999999888887554 46778899999999999999988888888776554 57789999999999
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hhcC--------------------CChhH
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AFNG--------------------KPTKT 132 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~--------------------~~~~~ 132 (287)
..+|+.. .++..+|.+|...|++++|+..|+++++..|... .+.. ...+.
T Consensus 241 ~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 241 EKAPGVT--DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHCSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HhCccHH--HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Confidence 9999887 7888999999999999999999999999988421 1100 01234
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH----HHHHHH-HHhccCHHHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA----CNLSHC-LIKQARYTEARSVLED 207 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~-~~~~g~~~~A~~~~~~ 207 (287)
+...+++ ++..+|.++.++..+|.++...|++++|+.+|++++...|++... ..+|.+ +...|++++|+..|++
T Consensus 319 A~~~~~~-a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 319 AVAHLKK-ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHH-HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHH-HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555 678899999999999999999999999999999999998887433 256654 4678999999999999
Q ss_pred HHhcccC
Q 023081 208 VLLGKLS 214 (287)
Q Consensus 208 ~l~~~~~ 214 (287)
+++..+.
T Consensus 398 al~i~~~ 404 (472)
T 4g1t_A 398 GVKINQK 404 (472)
T ss_dssp HHHSCCC
T ss_pred HHhcCcc
Confidence 9998543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=125.86 Aligned_cols=112 Identities=7% Similarity=-0.154 Sum_probs=107.5
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+-+++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|++++|+..|+++++++|+++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+++.+|.+|...|++++|+..|++++++.|+
T Consensus 105 --~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 105 --TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999885
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-18 Score=135.94 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=138.6
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhhh----
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQ-DRVDEAVEAIKSFRHLCSKQA---- 87 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~---- 87 (287)
+.++..+|.++...|++++|+.+|++++.+.+.. ..++.++|.+|... |++++|+.+|++++++.|...
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 5788999999999999999999999999887543 46889999999996 999999999999999988541
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
...++..+|.++...|++++|+..|++++++.|... ........++.++|.++...|++++
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------~~~~~~~~~~~~lg~~~~~~g~~~~ 217 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-------------------LSQWSLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-------------------TTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-------------------cccHHHHHHHHHHHHHHHHcCCHHH
Confidence 125688899999999999999999999999876310 0000123478899999999999999
Q ss_pred HHHHHHHHHhhCCCchHH-----H-HHHHHHH--hccCHHHHHHHHHHHHhc
Q 023081 168 AEVVYRKAQLIDPDANKA-----C-NLSHCLI--KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~-----~-~l~~~~~--~~g~~~~A~~~~~~~l~~ 211 (287)
|+.+|++++.++|+.... + .++.++. ..+++++|+..|++++..
T Consensus 218 A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 218 AARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 999999999999987543 1 4666664 567899999999888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=139.45 Aligned_cols=172 Identities=15% Similarity=0.075 Sum_probs=145.4
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-----hHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGD------RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-----AQE 89 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~ 89 (287)
.++..|..+...|++++|+..|++++...+ ..+.++..+|.+|...|++++|+.+++++++..+.. ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 467789999999999999999999997642 236789999999999999999999999999886531 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..+..+|.+|...|++++|+..|++++++.+. ....+....++.++|.+|...|++++|+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMD--------------------IQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 57889999999999999999999999987541 1111124678999999999999999999
Q ss_pred HHHHHHHh-----hCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQL-----IDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~-----~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|++++. .+|.....+ ++|.++..+|++++|..+++++++..
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999 566664454 89999999999999999999999875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=137.79 Aligned_cols=194 Identities=17% Similarity=0.170 Sum_probs=124.1
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQE 89 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~ 89 (287)
....++.+|..+...|++++|+..|++++...|.+ ..++..+|.++...|++++|+.++++++...+. ....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44556777777777777777777777777777766 346677777777777777777777777666321 1112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------------hhh-cCCC--------------------hhHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------------EAF-NGKP--------------------TKTAR 134 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~-~~~~--------------------~~~a~ 134 (287)
.++..+|.+|...|++++|+..+++++++.+.. ..+ .... +..+.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 566777777777777777777777777765421 111 0111 34444
Q ss_pred HHHHHHhhhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHH
Q 023081 135 SHGKKFQVTV------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 135 ~~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A 201 (287)
..++. ++.. .|....++..+|.++...|++++|+.++++++...+.... .+ ++|.++..+|++++|
T Consensus 168 ~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEE-NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH-HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 44443 2221 2234556777777777777777777777777765443321 22 677777777777777
Q ss_pred HHHHHHHHhcc
Q 023081 202 RSVLEDVLLGK 212 (287)
Q Consensus 202 ~~~~~~~l~~~ 212 (287)
+.+++++++..
T Consensus 247 ~~~~~~al~~~ 257 (406)
T 3sf4_A 247 SEYYKKTLLLA 257 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-17 Score=114.76 Aligned_cols=134 Identities=27% Similarity=0.318 Sum_probs=109.6
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+. ..+..++.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888888888766 5677788888
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|++++|+..+++++...|. ++.++..+|.++...|++++|...+++++..+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR--------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888887766543 56777888888888888888888888888877
Q ss_pred CC
Q 023081 180 PD 181 (287)
Q Consensus 180 ~~ 181 (287)
|+
T Consensus 134 ~~ 135 (136)
T 2fo7_A 134 PR 135 (136)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=145.48 Aligned_cols=154 Identities=14% Similarity=0.031 Sum_probs=128.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL 111 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 111 (287)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++. .++..+|.+|...|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999987 7899999999999999999999
Q ss_pred HHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHH
Q 023081 112 LKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSH 190 (287)
Q Consensus 112 ~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~ 190 (287)
|+++++..|. ++.++..+|.++...|++++|+..|+++++.+|++...+ ++|.
T Consensus 80 ~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 80 LQQASDAAPE--------------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998775 788999999999999999999999999999999998776 8999
Q ss_pred HHHhc---cCHHHHHHHHHHHHhccc
Q 023081 191 CLIKQ---ARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 191 ~~~~~---g~~~~A~~~~~~~l~~~~ 213 (287)
++..+ |++++|...++++++..+
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCC
Confidence 99999 999999999999998853
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=139.87 Aligned_cols=203 Identities=17% Similarity=0.206 Sum_probs=159.3
Q ss_pred hhHhhcCCCCc----hHHHHhHHhHHhhCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 9 YHVVHKLPPGD----SPYVRAKHVQLVEKDPEAAIVLFWKAINAG------DRVDSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 9 ~~~l~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
-+++...|+++ .+++.+|.++...|++++|+.+|++++... |..+.++..+|.++...|++++|+.++++
T Consensus 33 ~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 33 EAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677788874 678899999999999999999999998763 34467899999999999999999999999
Q ss_pred HHHhchhhh----HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhccch-------------
Q 023081 79 FRHLCSKQA----QESLDNVLIDLYKKCGR--------------------LDEQIELLKQKLRMIYH------------- 121 (287)
Q Consensus 79 ~~~~~p~~~----~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~------------- 121 (287)
++...|... ...++..+|.+|...|+ +++|+..+++++.+.+.
T Consensus 113 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 192 (406)
T 3sf4_A 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGN 192 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 999877531 23578889999999999 99999999999886331
Q ss_pred -hhhh-cCCChhHHHHHHHHHhhhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------hHHH-
Q 023081 122 -GEAF-NGKPTKTARSHGKKFQVTVKQE------TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA------NKAC- 186 (287)
Q Consensus 122 -~~~~-~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~- 186 (287)
+..+ ....++.+...+++ ++...+. ...++..+|.++...|++++|+.++++++...+.. ...+
T Consensus 193 la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 193 LGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHTBHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 1222 23346667666666 3333322 24488999999999999999999999998865543 2233
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 187 NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 187 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|.++...|++++|+.+++++++..
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 79999999999999999999998764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-18 Score=121.02 Aligned_cols=76 Identities=13% Similarity=-0.012 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 41 LFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 41 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|++++.+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444444444444455555555555555555555444444444 34444444444444444444444444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=139.59 Aligned_cols=192 Identities=18% Similarity=0.154 Sum_probs=156.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------chhhh
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD----SALKDMAVVLKQQDRVDEAVEAIKSFRHL------CSKQA 87 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~ 87 (287)
....++.+|..+...|++++|+..|++++...|++. .++..+|.++...|++++|+.++++++.. .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345677899999999999999999999999999885 57899999999999999999999999988 34444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------------hhhh-cCCC-----------------hhHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------------GEAF-NGKP-----------------TKTARS 135 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~-~~~~-----------------~~~a~~ 135 (287)
.++..+|.+|...|++++|+..|+++++..+. +..+ .... ++.+..
T Consensus 127 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 127 --KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 68899999999999999999999999998431 1122 1112 455555
Q ss_pred HHHHHhhhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHHH
Q 023081 136 HGKKFQVTV------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEAR 202 (287)
Q Consensus 136 ~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A~ 202 (287)
++++ ++.. .+....++..+|.++...|++++|+.++++++...+.... .+ ++|.++..+|++++|+
T Consensus 205 ~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 205 FYQE-NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 5554 2222 2335678999999999999999999999999997765432 33 8999999999999999
Q ss_pred HHHHHHHhcc
Q 023081 203 SVLEDVLLGK 212 (287)
Q Consensus 203 ~~~~~~l~~~ 212 (287)
.+++++++..
T Consensus 284 ~~~~~al~~~ 293 (411)
T 4a1s_A 284 EHYKRTLALA 293 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-19 Score=145.61 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=138.6
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-------------HHHHHHHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-------------QESLDNVLID 97 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~~~~~l~~ 97 (287)
..+++++|+..|++++...|..+.++..+|.++...|++++|+..|++++...|++. ...++..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456778888889888888898899999999999999999999999999999999761 0268999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+|...|++++|+..|+++++++|. ++.+++++|.+|...|++++|+..|+++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN--------------------------NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998888664 789999999999999999999999999999
Q ss_pred hCCCchHHH-HHHHHHHhccCHHHH-HHHHHHHHhc
Q 023081 178 IDPDANKAC-NLSHCLIKQARYTEA-RSVLEDVLLG 211 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~~~~g~~~~A-~~~~~~~l~~ 211 (287)
++|++..++ .++.++..+|++++| ...|++++..
T Consensus 259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 899999999999998 5577777754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=123.82 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=70.5
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|++++..+|++. ..+..+|.++...|++++|+..|++++..+|. ++.+|+.
T Consensus 9 ~~~~al~~~p~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~ 60 (148)
T 2vgx_A 9 TIAMLNEISSDTL--EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--------------------------DSRFFLG 60 (148)
T ss_dssp SHHHHTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHH
T ss_pred hHHHHHcCCHhhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--------------------------cHHHHHH
Confidence 4455555555554 45555555555555555555555555555443 4555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+|.++...|++++|+..|++++.++|+++..+ ++|.++..+|++++|+..|+++++..+.++.......++...+..+.
T Consensus 61 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555443 55555555555555555555555554333333333444444444444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=128.86 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hchhhhHHHHHHHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQ-------QDRV-------DEAVEAIKSFRH-LCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~~~-~~p~~~~~~~~~~l~~~~~ 100 (287)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ..|++. .++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 789999999999999999999999999874 5885 999999999999 699887 78999999999
Q ss_pred HcCCHHHHHHHHHHHHhccchhh--hhc--------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH-cCCHHHHH
Q 023081 101 KCGRLDEQIELLKQKLRMIYHGE--AFN--------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ-KGNYTSAE 169 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~~--~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~ 169 (287)
..|++++|...|++++++.|... ++. ....+.+...+++ ++...|.+..+|...+.+... .|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH-HHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999988533 332 1245677777777 788889888888877766543 79999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|+++++..|+++..| .++.++..+|++++|+..|++++..
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999998887 8999999999999999999999986
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=134.43 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=41.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINA------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QE 89 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~ 89 (287)
..+..+|.++...|++++|+..+++++.. .|..+.++..+|.++...|++++|+.++++++...|... ..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 34445555555555555555555555443 122234455555555555555555555555555443211 11
Q ss_pred HHHHHHHHHHHHcCC
Q 023081 90 SLDNVLIDLYKKCGR 104 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~ 104 (287)
.++..+|.++...|+
T Consensus 124 ~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 124 RALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc
Confidence 244455555555555
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-17 Score=130.42 Aligned_cols=192 Identities=17% Similarity=0.174 Sum_probs=153.4
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQESL 91 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ 91 (287)
..++..|..+...|++++|+..|++++...|.+ ..++..+|.++...|++++|+.++++++...+. .....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 457788999999999999999999999999988 467889999999999999999999999887431 112267
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------------hhh-cCCC--------------------hhHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------------EAF-NGKP--------------------TKTARSH 136 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~-~~~~--------------------~~~a~~~ 136 (287)
+..+|.++...|++++|+..++++++..+.. ..+ .... ++.+...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 8899999999999999999999999976521 111 0112 4555555
Q ss_pred HHHHhhhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHHHH
Q 023081 137 GKKFQVTV------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEARS 203 (287)
Q Consensus 137 ~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A~~ 203 (287)
++. ++.. .+....++..+|.++...|++++|+.++++++...+.... .+ ++|.++...|++++|..
T Consensus 166 ~~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 166 YEE-NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 554 2221 2334678999999999999999999999999987554321 33 89999999999999999
Q ss_pred HHHHHHhcc
Q 023081 204 VLEDVLLGK 212 (287)
Q Consensus 204 ~~~~~l~~~ 212 (287)
+++++++..
T Consensus 245 ~~~~al~~~ 253 (338)
T 3ro2_A 245 YYKKTLLLA 253 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-16 Score=119.30 Aligned_cols=164 Identities=14% Similarity=0.025 Sum_probs=142.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhchhhhHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD----RVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
..++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++.+. .++ ..
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~--~a 87 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK--SG 87 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH--HH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH--HH
Confidence 368999999999999999999999999999875 578999999999998 7 899999999999664 444 67
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----cC
Q 023081 92 DNVLIDLYKK----CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ----KG 163 (287)
Q Consensus 92 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g 163 (287)
...+|.+|.. .+++++|+.+|+++++..+.. +++.+++++|.+|.. .+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------AAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------HHHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------chHHHHHHHHHHHHcCCCCCC
Confidence 8889999987 899999999999998876510 137899999999999 89
Q ss_pred CHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhc-c-----CHHHHHHHHHHHHhc
Q 023081 164 NYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQ-A-----RYTEARSVLEDVLLG 211 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~-g-----~~~~A~~~~~~~l~~ 211 (287)
++++|+.+|++++.. +.++.. ++||.+|... | ++++|+.+|+++.+.
T Consensus 144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999998 555445 5999999764 3 899999999999987
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=135.60 Aligned_cols=192 Identities=7% Similarity=-0.002 Sum_probs=128.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---- 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---- 86 (287)
.+.+++.+|.++...|++++|+.++++++...+. ...++..+|.+|...|++++|+.++++++...|..
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence 4578999999999999999999999999987433 35689999999999999999999999999886632
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------h--------hhhh-cCCChhHHHHHHHHHhhhc-----CC
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY------H--------GEAF-NGKPTKTARSHGKKFQVTV-----KQ 146 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~--------~~~~-~~~~~~~a~~~~~~~~~~~-----~~ 146 (287)
....++..+|.+|...|++++|+.+|++++++.+ . +..+ ....++.|..++++ ++.. +|
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~ 300 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK-GMAYSQKAGDV 300 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCH
Confidence 1235788999999999999999999999999532 1 1111 12234444444443 2222 12
Q ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 147 ETSRILGNLGWAYMQKGN---YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 147 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.....+..+|.++...|+ +.+|+..+++. ...|.....+ .+|.++..+|++++|..+|+++++.
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 222223445555555555 44444444443 1111111222 5677777777777777777766654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=135.91 Aligned_cols=202 Identities=6% Similarity=-0.055 Sum_probs=149.0
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHh-------hCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLV-------EKDPE-------AAIVLFWKAIN-AGDRVDSALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A 72 (287)
+.+++...|+++..|+..|..+.. .|+++ +|+..|++++. ..|+...+|..+|.++...|++++|
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 335888899999999999999886 69987 99999999997 7999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh------h---h-cCCChhHHHHHHHHHhh
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------A---F-NGKPTKTARSHGKKFQV 142 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~---~-~~~~~~~a~~~~~~~~~ 142 (287)
...|+++++..|.++. .++..++.++...|++++|...|+++++..|... + + .....+.+...++. ++
T Consensus 341 ~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~-al 418 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL-GL 418 (530)
T ss_dssp HHHHHHHHHSSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHH-HH
T ss_pred HHHHHHHhCccccCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHH-HH
Confidence 9999999999887631 4788889999999999999999999998766310 0 0 12234455555554 45
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH----HH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK----AC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
...|+++.+|..+|.++...|++++|...|++++...|.++. .| ..+......|+.+.+..++.++++.
T Consensus 419 ~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666665444332 33 3444555556666666666666655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=118.43 Aligned_cols=114 Identities=13% Similarity=0.036 Sum_probs=55.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|++++.++|.
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444444444444455555555555555555555555555555444 44444455555555555555555544444332
Q ss_pred hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 122 GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++.+++.+|.++...|++++|+..|++++.++|+++
T Consensus 85 --------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 85 --------------------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp --------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred --------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 444455555555555555555555555555544443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=122.44 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=126.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..++.+|..+...|++++|+..|++++ .| .+.++..+|.++...|++++|+..|++++..+|+++ .++..+|.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHH
Confidence 457899999999999999999999985 33 678999999999999999999999999999999887 7899999999
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|++++|+..|+++++..|...... .....+...|..+.+++++|.++...|++++|+..|++++...
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLID----------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEE----------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHH----------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999999877311000 0000122456677899999999999999999999999999999
Q ss_pred CCc
Q 023081 180 PDA 182 (287)
Q Consensus 180 ~~~ 182 (287)
|++
T Consensus 152 p~~ 154 (213)
T 1hh8_A 152 SEP 154 (213)
T ss_dssp CSG
T ss_pred ccc
Confidence 986
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=111.54 Aligned_cols=124 Identities=10% Similarity=-0.078 Sum_probs=109.7
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|..+..++.+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|+++ ..+..+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence 445678999999999999999999999999999999999999999999999999999999999999999987 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
|.++...|++++|+..|++++++.| .....|++..++..++.+...
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p--------------------~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDA--------------------EVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH--------------------HHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCc--------------------ccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999985 223335566667666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=127.76 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=141.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh---
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD------SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--- 86 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--- 86 (287)
|+....+...+..+...|++++|+..+.+++...+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44445667788889999999999999999999877653 346678999999999999999999999865422
Q ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCC
Q 023081 87 -AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGN 164 (287)
Q Consensus 87 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~ 164 (287)
....++..+|.+|...|++++|+.+|++++++... ...++. .+.+++++|.+|...|+
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--------------------~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA--------------------LHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------cCccccchHHHHHhHHHHHHHHhh
Confidence 12357889999999999999999999999966321 000000 23689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCc------hHHH-HHHHHHHhccCHHHH-HHHHHHHHhcc
Q 023081 165 YTSAEVVYRKAQLIDPDA------NKAC-NLSHCLIKQARYTEA-RSVLEDVLLGK 212 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~------~~~~-~l~~~~~~~g~~~~A-~~~~~~~l~~~ 212 (287)
+++|+.++++++.+.++. ...+ ++|.++..+|++++| ..++++++...
T Consensus 212 y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999999999999875431 2333 899999999999999 88899998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=115.95 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=113.2
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 74 EAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 74 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
..|++++..+|++. ..+..+|..+...|++++|+..|++++..+|. ++.+|+
T Consensus 5 ~~l~~al~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~ 56 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL--EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--------------------------DARYFL 56 (142)
T ss_dssp ----CCTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHH
T ss_pred hhHHHHHcCCHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--------------------------cHHHHH
Confidence 46778888899887 78889999999999999999999998877664 899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQEL 232 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 232 (287)
.+|.++...|++++|+..|++++.++|+++..+ ++|.++..+|++++|+..|+++++..+.++.......++...+..+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876 9999999999999999999999998765555555556666666655
Q ss_pred cc
Q 023081 233 EP 234 (287)
Q Consensus 233 ~~ 234 (287)
..
T Consensus 137 ~~ 138 (142)
T 2xcb_A 137 TA 138 (142)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=123.17 Aligned_cols=155 Identities=13% Similarity=0.034 Sum_probs=130.9
Q ss_pred cchhhHhhcCCCCc---hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHH--------------
Q 023081 6 DQPYHVVHKLPPGD---SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQ-------------- 65 (287)
Q Consensus 6 ~~~~~~l~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~-------------- 65 (287)
..+.+++...|+++ .+++.+|.++...|++++|+..|+++++..|++. .+++.+|.++..
T Consensus 25 ~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 104 (225)
T 2yhc_A 25 TQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDR 104 (225)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccch
Confidence 34456788888775 6899999999999999999999999999999875 478999999876
Q ss_pred ----cCCHHHHHHHHHHHHHhchhhhHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc
Q 023081 66 ----QDRVDEAVEAIKSFRHLCSKQAQES---------------LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN 126 (287)
Q Consensus 66 ----~g~~~~A~~~~~~~~~~~p~~~~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 126 (287)
.|++++|+..|+++++..|++.... ....+|.+|...|++++|+..|+++++..|..
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---- 180 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT---- 180 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS----
T ss_pred hhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC----
Confidence 5789999999999999999764211 12567889999999999999999999988741
Q ss_pred CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 127 GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
|..+.++..+|.++...|++++|+..++.+....|++.
T Consensus 181 -------------------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 181 -------------------QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------------------CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 11247899999999999999999999999998888764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=133.37 Aligned_cols=140 Identities=9% Similarity=-0.034 Sum_probs=128.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---------------DSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~ 74 (287)
..+...|+.+.+++.+|.++...|++++|+..|++++...|.. ..++.++|.++...|++++|+.
T Consensus 138 ~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566678889999999999999999999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|+++++++|+++ .++..+|.+|...|++++|+..|+++++++|. +..++..
T Consensus 218 ~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------------------~~~a~~~ 269 (336)
T 1p5q_A 218 SCNKALELDSNNE--KGLSRRGEAHLAVNDFELARADFQKVLQLYPN--------------------------NKAAKTQ 269 (336)
T ss_dssp HHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--------------------------CHHHHHH
T ss_pred HHHHHHHhCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHH
Confidence 9999999999988 78999999999999999999999998888664 7889999
Q ss_pred HHHHHHHcCCHHHH-HHHHHHHHh
Q 023081 155 LGWAYMQKGNYTSA-EVVYRKAQL 177 (287)
Q Consensus 155 lg~~~~~~g~~~~A-~~~~~~al~ 177 (287)
+|.++...|++++| ...|++++.
T Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 270 LAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 456777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-16 Score=122.79 Aligned_cols=199 Identities=7% Similarity=-0.008 Sum_probs=169.9
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEK--DPEAAIVLFWKAINAGDRVDSALKDMAVVL----KQQ---DRVDEAVEAIKSFR 80 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~~ 80 (287)
++|..+|++..+|...|.+....+ ++++++.++..++..+|.+..+|...+.++ ... +++++++..+.+++
T Consensus 58 ~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l 137 (306)
T 3dra_A 58 LGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 588999999999999999999988 999999999999999999999999999999 777 78999999999999
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhccchhh-hhc---------CC-----ChhHHHHHHHHHhhh
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLD--EQIELLKQKLRMIYHGE-AFN---------GK-----PTKTARSHGKKFQVT 143 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~-~~~---------~~-----~~~~a~~~~~~~~~~ 143 (287)
+.+|++. .+|...+.+....|.++ ++++.++++++.+|... +++ +. .+....+++.. ++.
T Consensus 138 ~~~pkny--~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~-aI~ 214 (306)
T 3dra_A 138 SSDPKNH--HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKD-KIV 214 (306)
T ss_dssp HHCTTCH--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHH-HHH
T ss_pred HhCCCCH--HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHH-HHH
Confidence 9999988 78888888999999998 99999999999988422 221 11 14556666666 789
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhC---CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTS-AEVVYRKAQLID---PDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~---~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+|++..+|+.++.++...|+..+ ...++.+++..+ |.++.++ .++.++.+.|+.++|+++|+.+.+.
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999999999999999998655 556777777765 6666665 8999999999999999999999863
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-17 Score=127.52 Aligned_cols=161 Identities=25% Similarity=0.355 Sum_probs=133.3
Q ss_pred HhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------hhhhHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--------SKQAQESLDN 93 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~~ 93 (287)
...|++++|+.+|++++.. .|..+.++..+|.++...|++++|+.++++++... |... .++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA--ATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH--HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH--HHHH
Confidence 3467777888888877763 25567889999999999999999999999999874 4444 6889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
.+|.+|...|++++|+..|++++..... .. ..+|....++..+|.++...|++++|+.++
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREK-------------------VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH-------------------HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999987431 00 112446788999999999999999999999
Q ss_pred HHHHhh--------CCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 173 RKAQLI--------DPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 173 ~~al~~--------~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++++.. .|.....+ ++|.++..+|++++|+.+++++++.
T Consensus 151 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999997 44444444 8999999999999999999999986
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=128.37 Aligned_cols=171 Identities=15% Similarity=0.202 Sum_probs=140.5
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQES 90 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~ 90 (287)
.+...|.++...|++++|+..|.+++...+.. ..++.++|.+|...|++++|+.+|++++.+.+.. ....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46667889999999999999999999876432 5678899999999999999999999999886521 1235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
.+..+|.+|.. |++++|+.+|++++++.+.. ...+....++.++|.+|...|++++|+.
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--------------------ERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--------------------CChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889999998 99999999999999986620 0001135778999999999999999999
Q ss_pred HHHHHHhhCCCch------HHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 171 VYRKAQLIDPDAN------KAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 171 ~~~~al~~~~~~~------~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
+|++++.+.|+.. ..+ ++|.++..+|++++|+..|++++ ..+
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 9999999765432 122 78999999999999999999999 643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-16 Score=107.95 Aligned_cols=131 Identities=30% Similarity=0.343 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
.++..+|.++...|++++|+..+++++...|++. ..+..++.++...|++++|+..+++++...|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------------
Confidence 5788999999999999999999999999999876 67888999999999999999999998877653
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.++..+|.++...|++++|+..+++++...|.+...+ .+|.++...|++++|...+++++...
T Consensus 68 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 68 --------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp --------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred --------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 678899999999999999999999999999999987775 89999999999999999999998763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-16 Score=125.17 Aligned_cols=170 Identities=13% Similarity=0.106 Sum_probs=137.4
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQESLD 92 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~ 92 (287)
...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.. ....++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34567788999999999999999987776544 34468999999999999999999999865422 112468
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
..+|.+|...|++++|+.+|+++++.... . ...+....+++++|.+|...|++++|+.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEA--------------------LHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------cccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999976431 1 11122467899999999999999999999
Q ss_pred HHHHHhhCCCc------hHHH-HHHHHHHhccC-HHHHHHHHHHHHhcc
Q 023081 172 YRKAQLIDPDA------NKAC-NLSHCLIKQAR-YTEARSVLEDVLLGK 212 (287)
Q Consensus 172 ~~~al~~~~~~------~~~~-~l~~~~~~~g~-~~~A~~~~~~~l~~~ 212 (287)
+++++.+.+.. ...+ ++|.++..+|+ +++|+.+|++++...
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999875432 3344 89999999995 699999999999764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=116.74 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=114.3
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH-HHHcCCH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL-YKKCGRL 105 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~-~~~~g~~ 105 (287)
..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++ .++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQH 95 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCc
Confidence 3345678999999999999999999999999999999999999999999999999999887 788889999 8899998
Q ss_pred --HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 106 --DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 106 --~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++|+..|+++++..|. ++.++..+|.++...|++++|+..|++++..+|++.
T Consensus 96 ~~~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN--------------------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred chHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 9999999998877664 788999999999999999999999999999999875
Q ss_pred HHH
Q 023081 184 KAC 186 (287)
Q Consensus 184 ~~~ 186 (287)
...
T Consensus 150 ~~~ 152 (177)
T 2e2e_A 150 NRT 152 (177)
T ss_dssp CHH
T ss_pred cHH
Confidence 443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-16 Score=112.02 Aligned_cols=133 Identities=10% Similarity=-0.015 Sum_probs=117.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+..++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++ ..+..+|.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999887 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL--GNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
++...|++++|+..|+++++..|. +..++ ..++..+...|++++|+..+.++
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~--------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPH--------------------------DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999999998888764 55555 44455588889999999998877
Q ss_pred Hhh
Q 023081 176 QLI 178 (287)
Q Consensus 176 l~~ 178 (287)
...
T Consensus 144 ~~~ 146 (166)
T 1a17_A 144 RSV 146 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=126.93 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=110.9
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----h
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----Q 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~ 86 (287)
.+.+++.+|.++...|+++.|+.++++++...+. .+.++..+|.+|...|++++|+.++++++...+. .
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4578899999999999999999999999976432 2567889999999999999999999999987542 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
....++..+|.+|...|++++|+.+|++++++... ..+|..+.++..+|.++...|+++
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE---------------------KVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------------HCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------------hCChhHHHHHHHHHHHHHHCCCHH
Confidence 23357889999999999999999999999985321 122334566666777777777777
Q ss_pred HHHHHHHHHHhhC
Q 023081 167 SAEVVYRKAQLID 179 (287)
Q Consensus 167 ~A~~~~~~al~~~ 179 (287)
+|+.++++++.+.
T Consensus 279 ~A~~~~~~al~~~ 291 (378)
T 3q15_A 279 KAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-16 Score=107.59 Aligned_cols=116 Identities=13% Similarity=-0.048 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
..+..+..+|..+...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|+++++++|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------- 70 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--------- 70 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------
Confidence 3457788999999999999999999999999999887 78889999999999999999999998877664
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCchHHH-HHHHHHHh
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID------PDANKAC-NLSHCLIK 194 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~-~l~~~~~~ 194 (287)
++.+++.+|.++...|++++|+..|++++.++ |++...+ .++.+...
T Consensus 71 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 71 -----------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred -----------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999998 7776665 56665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-16 Score=108.18 Aligned_cols=123 Identities=9% Similarity=-0.014 Sum_probs=113.7
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|.+..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|++. .++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999887 7899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
.+|.++...|++++|+..|+++++..|. +..++..++.++...|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS--------------------------CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG--------------------------GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC--------------------------chHHHHHHHHHHHHhcC
Confidence 9999999999999999999999888764 67888889999887764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-16 Score=107.85 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=95.8
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-----HHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-----QESL 91 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~ 91 (287)
+.+.++..+|..++..|++++|+.+|+++++++|+++.++.++|.+|...|++++|+..++++++++|++. ...+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999998652 2346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+..+|.++...|++++|++.|++++...|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 888999999999999999999999988773
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-15 Score=109.78 Aligned_cols=131 Identities=13% Similarity=0.023 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
+..+..+|.++...|++++|+..|++++...|.+. .++..+|.++...|++++|+..++++++..|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------- 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 46789999999999999999999999999999887 78999999999999999999999998887664
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH---HHHHHHHhccCHHHHHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC---NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
++.+++.+|.++...|++++|+.+|++++..+|++...+ .++..+...|++++|+..+.++.
T Consensus 80 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 80 ---------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 788999999999999999999999999999999997765 45555888999999999998876
Q ss_pred hc
Q 023081 210 LG 211 (287)
Q Consensus 210 ~~ 211 (287)
..
T Consensus 145 ~~ 146 (166)
T 1a17_A 145 SV 146 (166)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-16 Score=107.99 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+.++.++|.+++..|++++|+.+|+++++++|+++ .++..+|.+|...|++++|+..|++++++.|...
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-------- 76 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-------- 76 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--------
Confidence 356788999999999999999999999999999988 7899999999999999999999999999987410
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
...+....++.++|.++...|++++|+.+|++++...|+..
T Consensus 77 -----------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 77 -----------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred -----------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 00111256789999999999999999999999999888653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=113.57 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=126.8
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------hhhhHHHHHHHHHHHHHHcC
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC------SKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~~~l~~~~~~~g 103 (287)
+..|++++|.+.++......+....++..+|.++...|++++|+.++++++... |... .++..+|.++...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH--RALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH--HHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHcC
Confidence 567999999996655544333567899999999999999999999999999853 3333 67889999999999
Q ss_pred CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 023081 104 RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQ-ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD- 181 (287)
Q Consensus 104 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~- 181 (287)
++++|+..+++++.+... ...++ ....++.++|.++...|++++|+.++++++...+.
T Consensus 81 ~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 81 NWDAARRCFLEERELLAS--------------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHH--------------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999987331 11011 13667899999999999999999999999975322
Q ss_pred -chH----H-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 182 -ANK----A-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 182 -~~~----~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.. . .++|.++..+|++++|...++++++..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 221 1 289999999999999999999999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-16 Score=108.00 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=114.9
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|++...++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|++. ..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~ 84 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYG 84 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999887 7889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
.+|.++...|++++|+..|+++++..|. ++.++..+|.++...|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPD--------------------------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCcc--------------------------chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998887664 788899999999988875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.6e-17 Score=121.99 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=118.0
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--------------HH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--------------QE 89 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--------------~~ 89 (287)
..+......|++++|.+.+.......+..+..+..+|..+...|++++|+..|++++...|.++ ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455567777777777655555555677888899999999999999999999998877543 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++..+|.+|...|++++|+..++++++..|. ++.+++.+|.++...|++++|+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN--------------------------NVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcccHHHHH
Confidence 57888999999999999999999998877664 7889999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHH-HHHHHHHh
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEAR-SVLEDVLL 210 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~l~ 210 (287)
.+|++++.++|++..++ .++.++..+++..++. ..+...+.
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998876 8999999988888777 44444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-16 Score=112.31 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=100.2
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..+.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.+|...|++++|+..|++++.++|++. .++.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 83 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWS 83 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999987 7899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+|.+|...|++++|+..|++++++.|.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999988774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=117.19 Aligned_cols=143 Identities=16% Similarity=0.066 Sum_probs=123.4
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhchhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLK-QQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+-+++..+|+++.+++.+|.++...|++++|+..|++++...| ++..+..++.+.. ..+...+|+..++++++.+|++
T Consensus 29 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~ 107 (176)
T 2r5s_A 29 IQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN 107 (176)
T ss_dssp HHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC
Confidence 3457788999999999999999999999999999999999999 7776666665433 3334456899999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+ .++..+|.++...|++++|+..|+++++..|. +.++.++..+|.++...|+.+
T Consensus 108 ~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------------------~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 108 F--ELACELAVQYNQVGRDEEALELLWNILKVNLG------------------------AQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------------------------TTTTHHHHHHHHHHHHHCSSC
T ss_pred H--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------------------cChHHHHHHHHHHHHHhCCCC
Confidence 8 78999999999999999999999999988773 114678999999999999999
Q ss_pred HHHHHHHHHHh
Q 023081 167 SAEVVYRKAQL 177 (287)
Q Consensus 167 ~A~~~~~~al~ 177 (287)
+|+..|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999999875
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-14 Score=114.58 Aligned_cols=175 Identities=7% Similarity=-0.023 Sum_probs=149.1
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR--VDEAVEAIK 77 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 77 (287)
.++..+|++..+|...+.+....+. +++++.++..++..+|.+..+|...+.++...|. +++++.++.
T Consensus 55 ~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 134 (331)
T 3dss_A 55 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 134 (331)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence 4888999999999999999877665 6899999999999999999999999999999994 999999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKCGR-LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++++.+|.+. .+|...+.+....|. ++++++++.++++.+|. +..+|+.++
T Consensus 135 k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~--------------------------N~SAW~~R~ 186 (331)
T 3dss_A 135 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------------------------NYSSWHYRS 186 (331)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC--------------------------CHHHHHHHH
T ss_pred HHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHH
Confidence 9999999887 788888888888898 68999999988777664 788888888
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhc-----------cCHHHHHHHHHHHHh
Q 023081 157 WAYMQK--------------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQ-----------ARYTEARSVLEDVLL 210 (287)
Q Consensus 157 ~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~-----------g~~~~A~~~~~~~l~ 210 (287)
.++... +.++++++++.+++..+|++..+| .+..++... +..+++++.+.++++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 888776 457888999999999999988887 344444433 457888888888888
Q ss_pred cc
Q 023081 211 GK 212 (287)
Q Consensus 211 ~~ 212 (287)
..
T Consensus 267 ~~ 268 (331)
T 3dss_A 267 LE 268 (331)
T ss_dssp HC
T ss_pred hC
Confidence 74
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-15 Score=117.96 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=135.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
.|.....+..+|..+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+++++...|.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~------- 183 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQDQD------- 183 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-------
Confidence 488889999999999999999999999999999999988 88999999999999999999999998777663
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
....+...+..+...++.++|+..|++++..+|++...+ ++|.++...|++++|+..|++
T Consensus 184 -------------------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 184 -------------------TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455566777778899999999999999999999998886 999999999999999999999
Q ss_pred HHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 208 VLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
+++..+ +..+..........+..++..
T Consensus 245 ~l~~~p-~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 245 HLRXDL-TAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHCT-TGGGGHHHHHHHHHHHHHCTT
T ss_pred HHhccc-ccccchHHHHHHHHHHHcCCC
Confidence 999842 222245555666666666643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=110.62 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
+..+..+..+|.++...|++++|+..|++++..+|++. .++..+|.+|...|++++|+..|+++++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------- 77 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVDPK-------- 77 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------
Confidence 34567788888888888888888888888888888877 67888888888888888888888887777654
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++.+|+.+|.++...|++++|+.+|++++.++|++...+
T Consensus 78 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 78 ------------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred ------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 678888888888888888888888888888888886654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=105.46 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
|..+.++..+|.++...|++++|+..|++++...|++. .++..+|.++...|++++|+..++++++..|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------- 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------- 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------
Confidence 55688999999999999999999999999999999887 78999999999999999999999998877664
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
++.+++.+|.++...|++++|+.+|++++..+|.+...+ .++.++..+|+
T Consensus 83 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 ------------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ------------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 788999999999999999999999999999999987776 89999887764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=104.96 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
+|..+.++..+|.++...|++++|+..+++++...|++. .++..+|.++...|++++|+..+++++...|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-------
Confidence 345578899999999999999999999999999999877 78899999999999999999999998877654
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY 198 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~ 198 (287)
++.++..+|.++...|++++|+.+|++++..+|++...+ .++.++..+|++
T Consensus 79 -------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -------------------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999999999999998776 899999988875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=135.89 Aligned_cols=154 Identities=16% Similarity=0.080 Sum_probs=130.1
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-------------HHHHHHHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-------------QESLDNVLID 97 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~~~~~l~~ 97 (287)
..+++++|+..|+.++...|..+.++..+|.++...|++++|+..|++++...|.+. ...++..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888889999999999999999999999999999988761 1268899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+|...|++++|+..|+++++++|. ++.+++++|.+|...|++++|+..|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA--------------------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999998888764 789999999999999999999999999999
Q ss_pred hCCCchHHH-HHHHHHHhccCHHHHHH-HHHHHHh
Q 023081 178 IDPDANKAC-NLSHCLIKQARYTEARS-VLEDVLL 210 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~~~~g~~~~A~~-~~~~~l~ 210 (287)
++|++..++ .++.++..++++++|.. .+.+++.
T Consensus 380 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 380 VNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998776 89999999999988764 4454443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=110.43 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..++.+|.++...|++++|+..|++++ .| ++ .++..+|.+|...|++++|+..|++++..+|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------ 69 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS--RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------ 69 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------
Confidence 457889999999999999999999986 33 34 68899999999999999999999998887664
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----------------HHH-HHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN----------------KAC-NLSHCLIKQA 196 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~-~l~~~~~~~g 196 (287)
++.+++.+|.++...|++++|+..|++++...|++. ..+ ++|.++..+|
T Consensus 70 --------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 135 (213)
T 1hh8_A 70 --------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135 (213)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred --------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence 788999999999999999999999999999888765 555 8999999999
Q ss_pred CHHHHHHHHHHHHhcc
Q 023081 197 RYTEARSVLEDVLLGK 212 (287)
Q Consensus 197 ~~~~A~~~~~~~l~~~ 212 (287)
++++|+..|+++++..
T Consensus 136 ~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 136 EWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999999985
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=113.38 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=127.0
Q ss_pred HhhcCC-CCchHHHHhHHhHHhhCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 11 VVHKLP-PGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN------AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 11 ~l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
.+..+| ....++..+|.++...|++++|+..|++++. ..+....++..+|.++...|++++|+.++++++...
T Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 17 ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445555 5678899999999999999999999999998 334457789999999999999999999999999882
Q ss_pred ---hhh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 84 ---SKQ--AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 84 ---p~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
+++ .....+..+|.++...|++++|+..+++++...+. .........++..+|.+
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ--------------------ADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--------------------ccchHHHHHHHHHHHHH
Confidence 211 22357889999999999999999999999987431 00001124567899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCL 192 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~ 192 (287)
+...|++++|..++++++.+.......+..+.+.
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 190 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELM 190 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998755443333333333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=114.95 Aligned_cols=136 Identities=10% Similarity=0.017 Sum_probs=115.8
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD----------------SALKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~ 76 (287)
...+.....+..+|..+...|++++|+..|++++...|..+ .++.++|.++...|++++|+.++
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33445567889999999999999999999999999998886 89999999999999999999999
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 77 KSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 77 ~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++++..+|++. .++..+|.+|...|++++|+..|++++++.|. ++.++..++
T Consensus 112 ~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~l~ 163 (198)
T 2fbn_A 112 SKVLKIDKNNV--KALYKLGVANMYFGFLEEAKENLYKAASLNPN--------------------------NLDIRNSYE 163 (198)
T ss_dssp HHHHHHSTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHH
T ss_pred HHHHHhCcccH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------------------cHHHHHHHH
Confidence 99999999887 78999999999999999999999998887664 788899999
Q ss_pred HHHHHcCCHHHHH-HHHHHHH
Q 023081 157 WAYMQKGNYTSAE-VVYRKAQ 176 (287)
Q Consensus 157 ~~~~~~g~~~~A~-~~~~~al 176 (287)
.++...++..++. ..|+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888877 4444444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=100.21 Aligned_cols=121 Identities=23% Similarity=0.224 Sum_probs=108.2
Q ss_pred CCCC-chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 15 LPPG-DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 15 ~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
+|.. ...++.+|.++...|++++|+..|++++...|....++..+|.++...|++++|+..+++++...|++. ..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWY 81 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHH
Confidence 4555 678999999999999999999999999999999999999999999999999999999999999999877 7888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
.++.++...|++++|+..|+++++..|. ++.++..+|.++...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPN--------------------------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHhcc
Confidence 9999999999999999999998877664 7788888888887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=120.12 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=118.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--- 83 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 83 (287)
.|....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 4555677788888888888888888888888765 24446677788888888888888888888887764
Q ss_pred -----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------cch--------hhhh-cCCChhHHHHHHHHHh
Q 023081 84 -----SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM--------IYH--------GEAF-NGKPTKTARSHGKKFQ 141 (287)
Q Consensus 84 -----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~--------~~~~-~~~~~~~a~~~~~~~~ 141 (287)
|... .++..+|.++...|++++|+.+|+++++. .|. +..+ ....++.|...++..
T Consensus 145 ~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a- 221 (311)
T 3nf1_A 145 LGKDHPDVA--KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI- 221 (311)
T ss_dssp HCTTCHHHH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred cCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 3333 56777888888888888888888888776 331 1112 122345555555442
Q ss_pred hh-------------------------------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 142 VT-------------------------------------------------VKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 142 ~~-------------------------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
+. ..|..+.++..+|.+|...|++++|+.+|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 21 34667889999999999999999999999
Q ss_pred HHHHhhCCC
Q 023081 173 RKAQLIDPD 181 (287)
Q Consensus 173 ~~al~~~~~ 181 (287)
++++++.|+
T Consensus 302 ~~al~l~~~ 310 (311)
T 3nf1_A 302 EAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-15 Score=109.56 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=110.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh
Q 023081 63 LKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV 142 (287)
Q Consensus 63 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~ 142 (287)
+...|++++|+..+++++..+|+++ .++..+|.+|...|++++|+..|+++++..|.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------------------- 76 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--------------------- 76 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------
Confidence 3467899999999999999999887 78999999999999999999999998887664
Q ss_pred hcCCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 143 TVKQETSRILGNLGWA-YMQKGNY--TSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
++.++..+|.+ +...|++ ++|+..|++++..+|++...+ .+|.++..+|++++|+..|+++++..+.+
T Consensus 77 -----~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 77 -----NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp -----CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred -----CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 78899999999 8899999 999999999999999998776 89999999999999999999999986443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-16 Score=122.46 Aligned_cols=180 Identities=13% Similarity=0.003 Sum_probs=151.2
Q ss_pred ccchhhHhhcCCCCchHHHHh-------HHhHHhhCCHHHHHHHHHHHHhcCCCCHH---------------------HH
Q 023081 5 RDQPYHVVHKLPPGDSPYVRA-------KHVQLVEKDPEAAIVLFWKAINAGDRVDS---------------------AL 56 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------------~~ 56 (287)
++-+-+++..+|+..++|..+ +.+....+.+.+++..+++.+.+.|.... +.
T Consensus 26 ~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~ 105 (282)
T 4f3v_A 26 LDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAIT 105 (282)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHH
T ss_pred HHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHH
Confidence 334556899999999999999 89999999999999999999997776433 44
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHH
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSH 136 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 136 (287)
..+|.++...|++++|.+.|..++...|++. ..+.++.++.+.++|++|+..|+.+....+.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~--------------- 167 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK--------------- 167 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH---------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc---------------
Confidence 4588999999999999999999998888765 6788899999999999999999866554210
Q ss_pred HHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-chHH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 137 GKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLID--PD-ANKA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
. ...+++.+|.++...|++++|+.+|++++... |. .... +++|.++..+|+.++|...|++++..
T Consensus 168 ----------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 168 ----------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 0 14578999999999999999999999998644 44 3444 49999999999999999999999997
Q ss_pred c
Q 023081 212 K 212 (287)
Q Consensus 212 ~ 212 (287)
.
T Consensus 238 ~ 238 (282)
T 4f3v_A 238 H 238 (282)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=107.28 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-------hh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK-------QA---QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE 123 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 123 (287)
..+..+|..+...|++++|+..|+++++++|+ +. ...+|..+|.++...|++++|+..|++++++...
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~-- 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR-- 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc--
Confidence 34555666666666666666666666666665 21 1148899999999999999999999999887322
Q ss_pred hhcCCChhHHHHHHHHHhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 124 AFNGKPTKTARSHGKKFQVTVKQETSRIL----GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.++++|+++.+| +++|.++..+|++++|+..|+++++++|++....
T Consensus 90 -----------------~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 90 -----------------RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp -----------------HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred -----------------cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 556677789999 9999999999999999999999999999886543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-14 Score=116.50 Aligned_cols=174 Identities=12% Similarity=0.028 Sum_probs=144.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD-----SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QE 89 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~ 89 (287)
......+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|... ..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35667889999999999999999999999876552 2678899999999999999999999999877432 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc--CCCcHHHHHHHHHHHHHcCCHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV--KQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
.....+|.++...|++++|+..++++++..+. ... .|....++.++|.++...|++++
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINE--------------------QHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------------------hccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 34678999999999999999999999987541 111 13346678889999999999999
Q ss_pred HHHHHHHHHhhCCCc-----hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDA-----NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~-----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|..++++++...+.. ...+ .+|.++...|++++|...+++++...
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999987753 1223 79999999999999999999998763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=103.85 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=100.4
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++ .++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHH
Confidence 346788999999999999999999999999999999999999999999999999999999999999999999987 789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..+|.++...|++++|+..|++++++.|.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999999999874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=103.05 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=93.3
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++. .++..+|.+
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~la~~ 94 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVS 94 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999988 789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccch
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|...|++++|+..|+++++.+|.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999998874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-14 Score=98.44 Aligned_cols=120 Identities=29% Similarity=0.319 Sum_probs=105.4
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 49 GDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 49 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
+|.. ..++..+|.++...|++++|+..+++++...|++. ..+..++.++...|++++|+..+++++...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------ 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------
Confidence 4444 67899999999999999999999999999999877 68889999999999999999999998877653
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhcc
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQA 196 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g 196 (287)
++.++..+|.++...|++++|+.++++++..+|+++..+ .++.++...|
T Consensus 76 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 --------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 688899999999999999999999999999999998775 8888877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-13 Score=109.55 Aligned_cols=167 Identities=10% Similarity=-0.039 Sum_probs=117.1
Q ss_pred HHhhCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH----HH
Q 023081 29 QLVEKDP-EAAIVLFWKAINAGDRVDSALKDMAVVLKQQD--RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY----KK 101 (287)
Q Consensus 29 ~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~----~~ 101 (287)
....|.+ ++|+..+.++|..+|++..+|+..+.++...| ++++++..+..++..+|++. .+|+..+.++ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--QIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH--HHHHHHHHHHHHHHHh
Confidence 3445555 68999999999999999999999999999999 99999999999999999987 6777777777 66
Q ss_pred c---CCHHHHHHHHHHHHhccchhh-hhc--------CCChh--HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC---
Q 023081 102 C---GRLDEQIELLKQKLRMIYHGE-AFN--------GKPTK--TARSHGKKFQVTVKQETSRILGNLGWAYMQKGN--- 164 (287)
Q Consensus 102 ~---g~~~~A~~~~~~al~~~~~~~-~~~--------~~~~~--~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--- 164 (287)
. +++++++..+.++++.+|... ++. -.... .....+.+ .+..+|.+..+|...+.+....|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~-~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK-VIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccccch
Confidence 6 789999999999998887411 110 01122 34444444 455555555555555555555554
Q ss_pred ---HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH
Q 023081 165 ---YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY 198 (287)
Q Consensus 165 ---~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~ 198 (287)
++++++++++++..+|++..+| .++.++...|+.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence 5555555555555555555555 455555555553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-15 Score=103.45 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=94.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
.+|..+..+..+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..+++++++.|.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------ 75 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQ------ 75 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------
Confidence 4567788999999999999999999999999999999887 78899999999999999999999998877664
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
++.+++.+|.++...|++++|+..|++++..+|+
T Consensus 76 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 --------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7889999999999999999999999999998877
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-15 Score=105.27 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=94.5
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------VDS-----ALKDMAVVLKQQDRVDEAVEAIKSFRHL---- 82 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 82 (287)
...+...|..++..|++++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 466789999999999999999999999999998 443 9999999999999999999999999999
Q ss_pred ---chhhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 83 ---CSKQAQESLD----NVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 83 ---~p~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+|++. ..| +..|.++...|++++|+..|++++++.|.
T Consensus 91 ~e~~pd~~--~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQDEG--KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTSTHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchH--HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99887 677 99999999999999999999999999885
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=109.24 Aligned_cols=190 Identities=9% Similarity=-0.019 Sum_probs=140.0
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD--RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK- 85 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~- 85 (287)
-+++...+.+...++.+|.++...|++++|++.+.+.+..+| ...+++..++.++...|+.+.|.+.++++.+.+|+
T Consensus 90 ~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 90 ENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 345555555667778899999999999999999999988886 77888889999999999999999999999888883
Q ss_pred ----hhHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 86 ----QAQESLDNVL--IDLYKKCG--RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 86 ----~~~~~~~~~l--~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
+. +...+ +.+....| ++.+|...|+++.+..|.. .++..+++
T Consensus 170 ~~~~d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~------------------------~~~~lLln--- 219 (310)
T 3mv2_B 170 VSGDNE---MILNLAESYIKFATNKETATSNFYYYEELSQTFPTW------------------------KTQLGLLN--- 219 (310)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH------------------------HHHHHHHH---
T ss_pred cccchH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc------------------------ccHHHHHH---
Confidence 32 22333 33344445 8999999999877765510 01333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhh----------CCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q 023081 158 AYMQKGNYTSAEVVYRKAQLI----------DPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVK 226 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 226 (287)
++..+|++++|...++.+++. +|+++... +++.+...+|+ +|.++++++.+.. ++......+....
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~d~~~k~ 296 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIKHHQEID 296 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 899999999999999988876 47888887 89888888998 8999999999873 2223334444444
Q ss_pred HHHHh
Q 023081 227 ELLQE 231 (287)
Q Consensus 227 ~~l~~ 231 (287)
..+.+
T Consensus 297 ~~Fd~ 301 (310)
T 3mv2_B 297 AKFDE 301 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=128.33 Aligned_cols=134 Identities=8% Similarity=-0.073 Sum_probs=120.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---------------DSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~ 74 (287)
..+...|+....+..+|..++..|++++|+..|++++..+|.+ ..++.++|.+|...|++++|+.
T Consensus 259 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3456667788899999999999999999999999999999988 6899999999999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|++++.++|++. .+++.+|.+|...|++++|+..|+++++++|. +..++..
T Consensus 339 ~~~~al~~~p~~~--~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--------------------------~~~a~~~ 390 (457)
T 1kt0_A 339 CCDKALGLDSANE--KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--------------------------NKAARLQ 390 (457)
T ss_dssp HHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------------CHHHH
T ss_pred HHHHHHhcCCccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------CHHHHHH
Confidence 9999999999987 78999999999999999999999998888764 6788999
Q ss_pred HHHHHHHcCCHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~ 171 (287)
++.++...+++++|...
T Consensus 391 l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-14 Score=122.19 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hchhhhHHHHHHHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQ-------QDRVD-------EAVEAIKSFRH-LCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~-~~p~~~~~~~~~~l~~~~~ 100 (287)
..++..|++++...|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++. .++..++.++.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~--~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 478899999999999999999999999986 79987 99999999997 789877 78999999999
Q ss_pred HcCCHHHHHHHHHHHHhccchh--hhhcC--------CChhHHHHHHHHHhhhcCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 023081 101 KCGRLDEQIELLKQKLRMIYHG--EAFNG--------KPTKTARSHGKKFQVTVKQETSRILGNLGWA-YMQKGNYTSAE 169 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~--~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~ 169 (287)
..|++++|...|+++++..|.. .++.. ...+.+...+++ ++...|.+...+...+.+ +...|++++|.
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCTTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999999998854 23421 135567777776 677778777777776666 44699999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|+++++..|+++..| .++.++...|+.++|..+|++++...+
T Consensus 412 ~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 412 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99999999999998887 899999999999999999999998743
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=105.65 Aligned_cols=115 Identities=18% Similarity=0.088 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHL------------------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
+..+..+|..++..|++++|+..|.+++.. +|... .++..+|.+|...|++++|+..+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI--PLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHH--HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 355666777777777777777777777766 45444 5778888888888888888888888
Q ss_pred HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHH-HHHHHH
Q 023081 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KAC-NLSHCL 192 (287)
Q Consensus 115 al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~-~l~~~~ 192 (287)
+++++|. ++.+++.+|.++...|++++|+..|++++.++|+++ .+. .++.+.
T Consensus 89 al~~~p~--------------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 89 VLKREET--------------------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHhcCCc--------------------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 7776554 778888888888888888888888888888888876 433 555555
Q ss_pred Hhc
Q 023081 193 IKQ 195 (287)
Q Consensus 193 ~~~ 195 (287)
...
T Consensus 143 ~~~ 145 (162)
T 3rkv_A 143 ERR 145 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-15 Score=127.76 Aligned_cols=163 Identities=8% Similarity=-0.008 Sum_probs=148.7
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD--RVDEAVEAIK 77 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~ 77 (287)
+++..+|++..+|+..+.+....|+ +++++..+.+++..+|++..+|...+.++...| +++++++.+.
T Consensus 54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 5889999999999999999999888 999999999999999999999999999999999 7799999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKCG-RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++++.+|.+. .+|...+.+....| .++++++++.++++.+| .+..+|+.+|
T Consensus 134 k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p--------------------------~n~saW~~r~ 185 (567)
T 1dce_A 134 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--------------------------SNYSSWHYRS 185 (567)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--------------------------CCHHHHHHHH
T ss_pred HHHhhccccc--cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--------------------------CCccHHHHHH
Confidence 9999999987 78888899999999 89999999988776655 4899999999
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH
Q 023081 157 WAYMQK--------------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE 200 (287)
Q Consensus 157 ~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~ 200 (287)
.++... +.++++++++.+++..+|++..+| .++.++...+++++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 998885 568999999999999999999998 78888888887555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-16 Score=134.80 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=120.2
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+.+++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+|+++ .++..+|.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~ 82 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAA 82 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence 4566788899999999999999999999999999999999999999999999999999999999999887 78999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH--
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA--YMQKGNYTSAEVVYR-- 173 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A~~~~~-- 173 (287)
+|...|++++|+..|++++++.|. +..++..++.+ +...|++++|+..++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~--------------------------~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPH--------------------------DKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT--------------------------CTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999998888664 66778888888 889999999999999
Q ss_pred ---------HHHhhCCCc
Q 023081 174 ---------KAQLIDPDA 182 (287)
Q Consensus 174 ---------~al~~~~~~ 182 (287)
+++...|+.
T Consensus 137 ~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CSTTTCCTTSSCCCCTTC
T ss_pred chhHhhhhhhhccccccc
Confidence 777777664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-12 Score=112.65 Aligned_cols=186 Identities=16% Similarity=0.102 Sum_probs=138.8
Q ss_pred CCCCchHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhh
Q 023081 15 LPPGDSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.++.+++.+|..+.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+.. +
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C
Confidence 45678888899988888 88999999999988875 567888899999988 888999999999887754 3
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccc------hhhhh-c----CCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 87 AQESLDNVLIDLYKK----CGRLDEQIELLKQKLRMIY------HGEAF-N----GKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~------~~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
+ .....+|.+|.. .+++++|+.+|+++.+... .+..+ . ......+...+++ +.. .+++.+
T Consensus 111 ~--~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~-a~~--~~~~~a 185 (490)
T 2xm6_A 111 P--QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK-AAE--QGNVWS 185 (490)
T ss_dssp H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHH--TTCHHH
T ss_pred H--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHH--CCCHHH
Confidence 3 466778888888 7888888888888887643 23333 2 2345666666665 333 256788
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 152 LGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 152 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
++.+|.+|.. .+++++|+.+|+++... .++..+ .+|.++.. .+++++|+.+|+++++.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 8888888887 78888888888888764 334443 77777775 67788888888877764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=116.49 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=153.1
Q ss_pred CCCchHHHHhHHhHHhhC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhchhhhH
Q 023081 16 PPGDSPYVRAKHVQLVEK---DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ----DRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
+.++.+++.+|.++...| ++++|+.+|+++...+|.....++.+|.+|... +++++|+.+|+++. |+++
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~- 248 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP- 248 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST-
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH-
Confidence 345669999999999999 999999999999999999988889999999765 79999999999988 7776
Q ss_pred HHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhccc------hhhhh-cC----CChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 89 ESLDNVLIDL-Y--KKCGRLDEQIELLKQKLRMIY------HGEAF-NG----KPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 89 ~~~~~~l~~~-~--~~~g~~~~A~~~~~~al~~~~------~~~~~-~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.....+|.+ + ...+++++|+.+|+++.+... .+..+ .| .....+...+++ +. ++++.++++
T Consensus 249 -~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~-Aa---~g~~~A~~~ 323 (452)
T 3e4b_A 249 -ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEK-AV---GREVAADYY 323 (452)
T ss_dssp -HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHT-TT---TTCHHHHHH
T ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-Hh---CCCHHHHHH
Confidence 788889988 4 468999999999999998653 23444 23 256777777775 33 889999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 155 LGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 155 lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+|.+|.. ..++++|..+|+++.+. .++.+ ++||.+|.. ..++.+|..+|+++.+.
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 9999987 44999999999999874 45555 489999874 46899999999999976
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-13 Score=115.50 Aligned_cols=182 Identities=18% Similarity=0.127 Sum_probs=97.1
Q ss_pred chHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 19 DSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+... + .
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~--~ 292 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--S--D 292 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--H--H
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--H--H
Confidence 3344444444443 34444444444444432 233444455555544 4555555555555544321 1 3
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHhccch------hhhh-cCC---ChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 91 LDNVLIDLYKKC-----GRLDEQIELLKQKLRMIYH------GEAF-NGK---PTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 91 ~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~------~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
....+|.+|... +++++|+.+|+++++..+. +..+ .+. ..+.+...+++ +.. .+++.+++.+
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~-a~~--~~~~~a~~~L 369 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRK-AAA--KGEKAAQFNL 369 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHH-HHH--TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHH-HHH--CCCHHHHHHH
Confidence 444555555555 5666666666666554331 1122 111 23334444443 222 2567777777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 156 GWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 156 g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
|.+|.. .+++++|+.+|+++++.. ++.++ +||.+|.. .+++++|..+|+++++.
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 777777 677777777777776643 34443 67777776 67777777777777766
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-15 Score=101.22 Aligned_cols=101 Identities=12% Similarity=-0.014 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
.++.+|..+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++++|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------------- 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIALNHARMLDPK------------- 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------
Confidence 356677777777777777777777777777766 66777777777777777777777776666553
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 84 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 84 -------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 667777777777777777777777777777777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-14 Score=96.96 Aligned_cols=102 Identities=10% Similarity=-0.002 Sum_probs=96.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+..++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+++ ..+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999877 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccch
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
++...|++++|+..++++++..|.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999998888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=116.47 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=129.0
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQ 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~ 88 (287)
...+..+|.++...|++++|+.+|++++.+.+. ...++.++|.+|.. |++++|+.+|++++.+.|.. ..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 457889999999999999999999999987532 24678899999999 99999999999999998753 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
..++..+|.+|...|++++|+..|++++.+.+.. ...+....++..+|.++...|++++|
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--------------------ENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--------------------CChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 3578899999999999999999999999986631 11111245788899999999999999
Q ss_pred HHHHHHHHhhCCCchHH-----H-HHHHHHHhccCHHHHHH
Q 023081 169 EVVYRKAQLIDPDANKA-----C-NLSHCLIKQARYTEARS 203 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~-----~-~l~~~~~~~g~~~~A~~ 203 (287)
+.+|++++ .+|..... . .++.++ ..|+.+....
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 99876422 1 455554 4666554444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=104.53 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=77.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQE 89 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~ 89 (287)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 455666666666666666666666666543321 2355566666666666666666666666554421 112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..+..+|.++...|++++|+..++++++..+. ....+....++..+|.++...|++++|.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--------------------LKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------------ccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 34555666666666666666666666655321 0001112444555666666666666666
Q ss_pred HHHHHHHhh
Q 023081 170 VVYRKAQLI 178 (287)
Q Consensus 170 ~~~~~al~~ 178 (287)
.++++++.+
T Consensus 150 ~~~~~a~~~ 158 (164)
T 3ro3_A 150 HFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=106.21 Aligned_cols=102 Identities=18% Similarity=0.046 Sum_probs=95.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINA------------------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
.+..+...|..++..|++++|+..|.+++.. +|....++.++|.+|...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567889999999999999999999999998 6677789999999999999999999999999
Q ss_pred HHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 80 RHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 80 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+.++|+++ .++..+|.+|...|++++|+..|+++++++|.
T Consensus 90 l~~~p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKREETNE--KALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcCCcch--HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 99999988 78999999999999999999999999999885
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=98.23 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=100.5
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh--hhHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK--QAQESLD 92 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~ 92 (287)
+|++...++.+|.++...|++++|+..|++++..+|....++..+|.++...|++++|+..++++++..|+ +. .++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK--DVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH--HHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH--HHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999998 77 789
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhccch
Q 023081 93 NVLIDLYKKC-GRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 93 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~ 121 (287)
..+|.++... |++++|++.+++++...|.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999999 9999999999999998774
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=94.86 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
+..+..+|.++...|++++|+..+++++...|+++ .++..+|.++...|++++|+..++++++..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----------- 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-----------
Confidence 56788999999999999999999999999999877 78888999999999999999999998877653
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
++.++..+|.++...|++++|...+++++..+|+++..+ .++.+.
T Consensus 71 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 71 ---------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 788899999999999999999999999999999987775 666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-14 Score=101.18 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=100.5
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
+...|.+...++.+|..+...|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++...|++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~- 99 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV- 99 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH-
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH-
Confidence 34567888999999999999999999999999999999987 89999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.++..+|.++...|++++|+..|+++++..|.
T Consensus 100 -~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 100 -KALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 78899999999999999999999999888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=99.49 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=95.3
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-------hHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-------AQE 89 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~ 89 (287)
..+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|++ .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-- 79 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA-- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH--
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH--
Confidence 3467889999999999999999999999999999999999999999999999999999999999998865 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++..+|.++...|++++|+..|+++++..|
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 6888999999999999999999999998866
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-13 Score=109.62 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=118.6
Q ss_pred HhhcCCCCc------hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 11 VVHKLPPGD------SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 11 ~l~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
.+...|... ..++.+|.++...|++++|+..|++++...+.. ..++..+|.+|...|++++|+.+|++
T Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555433 336778999999999999999999999765433 56899999999999999999999999
Q ss_pred HHHh---chhhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 79 FRHL---CSKQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 79 ~~~~---~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
++.. .|++. ...++..+|.+|...|++++|+.++++++++.+. .......+.+++
T Consensus 181 al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--------------------~~~~~~~~~~~~ 240 (293)
T 2qfc_A 181 ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--------------------INSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTBCSSHHHHHH
T ss_pred HHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--------------------cCcHHHHHHHHH
Confidence 9954 33321 1257889999999999999999999999988541 111222377899
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHHhh
Q 023081 154 NLGWAYMQKGNYTSA-EVVYRKAQLI 178 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A-~~~~~~al~~ 178 (287)
++|.+|...|++++| ..+|++++.+
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999 8889999864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=111.03 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=112.6
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-----hhhHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-----KQAQESL 91 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~ 91 (287)
..+|.++...+++++|+.+|++++...+.. ..++.++|.+|...|++++|+.+|+++++... ......+
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 358888888899999999999999865332 34789999999999999999999999996422 1122357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-NYTSAEV 170 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~ 170 (287)
+..+|.+|...|++++|+.++++++++.+. ....+..+.+++++|.++...| .+++|+.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCR--------------------INSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------------cCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 899999999999999999999999988652 2222334788999999999999 4799999
Q ss_pred HHHHHHhhC
Q 023081 171 VYRKAQLID 179 (287)
Q Consensus 171 ~~~~al~~~ 179 (287)
+|++++.+.
T Consensus 259 ~~~~Al~i~ 267 (293)
T 3u3w_A 259 AYKKASFFF 267 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=96.27 Aligned_cols=103 Identities=12% Similarity=-0.079 Sum_probs=93.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNV 94 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~ 94 (287)
+.+++.+|..+...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++...|++.. ..++..
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 35678999999999999999999999999999987 79999999999999999999999999999998721 167889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+|.++...|++++|+..|+++++..|.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999988774
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=98.91 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=104.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN 126 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 126 (287)
..|.....+..+|..+...|++++|+..|++++...|++. ...++..+|.+|...|++++|+..++++++..|.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----- 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----- 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----
Confidence 4467789999999999999999999999999999999761 1268889999999999999999999998877653
Q ss_pred CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 127 GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
++.+++.+|.++...|++++|+.+|++++..+|++...+ .++.+.
T Consensus 98 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 ---------------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 788999999999999999999999999999999997776 566554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=109.10 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=140.3
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
++-....+....+..++|+..+.+++..+|++..+|...+.++...| .+++++..+.+++..+|++. .+|+..+.++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 33444444455566689999999999999999999999999999999 59999999999999999987 7888888888
Q ss_pred HHc-C-CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH--------HHH
Q 023081 100 KKC-G-RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT--------SAE 169 (287)
Q Consensus 100 ~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~ 169 (287)
... + +++++++.+.++++.+|. +..+|...+++....|.++ +++
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk--------------------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK--------------------------NYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT--------------------------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 887 7 899999999988777664 7888888888888888777 888
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccC-------HHHHHHHHHHHHhcccCCCCc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQAR-------YTEARSVLEDVLLGKLSGSTE 218 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~-------~~~A~~~~~~~l~~~~~~~~~ 218 (287)
+++.++++.+|.+..+| +.+.++..+++ ++++++++.+++...+.+...
T Consensus 188 e~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~Sa 244 (349)
T 3q7a_A 188 DWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSA 244 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888888888887 77888877776 678888888888874433333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-13 Score=119.20 Aligned_cols=173 Identities=11% Similarity=0.014 Sum_probs=148.9
Q ss_pred hhCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 31 VEKD-PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR----------VDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 31 ~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..|+ .++|++.+.+++..+|++..+|+..+.++...|+ +++++..+++++..+|++. .+|...+.++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence 3444 4678999999999999999999999999999998 9999999999999999988 7899999999
Q ss_pred HHcC--CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 023081 100 KKCG--RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-NYTSAEVVYRKAQ 176 (287)
Q Consensus 100 ~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al 176 (287)
...+ +++++++.++++++.+|. +..+|...+++....| .++++++++.+++
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~--------------------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER--------------------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HHcccccHHHHHHHHHHHHhhccc--------------------------cccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 9999 779999999998887664 8999999999999999 9999999999999
Q ss_pred hhCCCchHHH-HHHHHHHhc--------------cCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 177 LIDPDANKAC-NLSHCLIKQ--------------ARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 177 ~~~~~~~~~~-~l~~~~~~~--------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
+.+|.+..+| +.+.++..+ +.++++++++.+++...+.+.. .+....-++...+.
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s---aW~y~~~ll~~~~~ 241 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS---AWFYHRWLLGRAEP 241 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH---HHHHHHHHHSCCCC
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc---HHHHHHHHHhcCCC
Confidence 9999999998 788888775 6689999999999998544444 33444555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-14 Score=96.93 Aligned_cols=124 Identities=11% Similarity=0.113 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+.++..+|.++...|++++|+.++++++...|.++ .++..+|.++...|++++|+..+++++...|...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------- 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-------- 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc--------
Confidence 457889999999999999999999999999999887 7889999999999999999999999999876300
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhcc
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQA 196 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g 196 (287)
...+..+.+++.+|.++...|++++|+.+|++++...|+......++.+...++
T Consensus 73 -----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 73 -----------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred -----------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 000001778999999999999999999999999999985333336776665443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=123.49 Aligned_cols=150 Identities=19% Similarity=0.143 Sum_probs=76.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
....+..+|..++..|++++|+..|++++...|.+.. +...|++.++...+ ...++..+|.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 3444555555555555555555555555555554320 11122222222111 0136778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+|...|++++|+..|+++++++|. ++.+++++|.+|...|++++|+..|++++.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK--------------------------NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888889999999999988888664 678888899999999999999999999988
Q ss_pred hCCCchHHH-HHHHHH-HhccCHHHHHHHHHHHHhcc
Q 023081 178 IDPDANKAC-NLSHCL-IKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~-~~~g~~~~A~~~~~~~l~~~ 212 (287)
++|++..++ .++.+. ...+..+++...|.+++...
T Consensus 293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp -------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 888887775 677774 45566778888888888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=105.71 Aligned_cols=174 Identities=10% Similarity=-0.035 Sum_probs=143.4
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhh
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEK--DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR-VDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~ 86 (287)
.++..+|++..+|...+.+....+ ++++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+
T Consensus 99 ~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 99 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 478889999999999999999888 48999999999999999999999999999999998 699999999999999988
Q ss_pred hHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 87 AQESLDNVLIDLYKKC--------------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
. .+|+..+.++... +.++++++++.+++..+| ++..+|
T Consensus 179 ~--SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P--------------------------~d~SaW 230 (331)
T 3dss_A 179 Y--SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--------------------------NDQSAW 230 (331)
T ss_dssp H--HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST--------------------------TCHHHH
T ss_pred H--HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC--------------------------CCHHHH
Confidence 7 6788888777766 346677777776665554 589999
Q ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHH---HhccCHHHHHHHHHHHHhc
Q 023081 153 GNLGWAYMQK-----------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCL---IKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 153 ~~lg~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~---~~~g~~~~A~~~~~~~l~~ 211 (287)
+.+..++... +.++++++.++++++..|++...+ .++.+. ...|..++...++.++++.
T Consensus 231 ~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 231 FYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 8776666665 468999999999999999984333 233222 2467788889999999887
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=110.16 Aligned_cols=162 Identities=12% Similarity=0.007 Sum_probs=143.5
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhchh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEK-DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-D-RVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~~~~~~p~ 85 (287)
-++|..+|++..+|...+.+....| .+++++.++..++..+|++..+|...+.++... + +++++++++.++++.+|+
T Consensus 78 ~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 78 EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 3588999999999999999999998 599999999999999999999999999999988 8 899999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 86 QAQESLDNVLIDLYKKCGRLD--------EQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
+. .+|...+.+....|.++ ++++.++++++.+| .+..+|+..+.
T Consensus 158 Ny--~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--------------------------~N~SAW~~R~~ 209 (349)
T 3q7a_A 158 NY--HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--------------------------RNNSAWGWRWY 209 (349)
T ss_dssp CH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHH
Confidence 87 67877777777777777 77777777666655 48999999999
Q ss_pred HHHHcCC-------HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH
Q 023081 158 AYMQKGN-------YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY 198 (287)
Q Consensus 158 ~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~ 198 (287)
++...++ ++++++++++++..+|++..+| ++..++...|+.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999987 7999999999999999999998 677777776664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=99.83 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
..++..+|.++...|++++|+.++++++...+... ...++..+|.++...|++++|+..+++++...+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------- 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ------- 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Confidence 46788999999999999999999999999876431 2247888999999999999999999999988652
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---c---hHHH-HHHHHHHhccCHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD---A---NKAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~---~~~~-~l~~~~~~~g~~~~A 201 (287)
....+....++..+|.++...|++++|+.++++++...+. . ...+ .+|.++..+|++++|
T Consensus 82 -------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 82 -------------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -------------hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 1111113667899999999999999999999999976432 1 1222 799999999999999
Q ss_pred HHHHHHHHhcc
Q 023081 202 RSVLEDVLLGK 212 (287)
Q Consensus 202 ~~~~~~~l~~~ 212 (287)
..+++++++..
T Consensus 149 ~~~~~~a~~~~ 159 (164)
T 3ro3_A 149 MHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=113.32 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
|..+..+..+|..+...|++++|+..|++++..+|+++ .++..+|.+|...|++++|+..++++++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQ-------- 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------
Confidence 56678999999999999999999999999999999887 78999999999999999999999998877664
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 71 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 71 ------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 78999999999999999999999999999988865
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=112.83 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRH----------------LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~----------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
..+..+|..+...|++++|+..|+++++ ..|... .++..+|.+|...|++++|+..++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL--SCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5677888888888888888888888887 555555 6889999999999999999999999888
Q ss_pred ccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhcc
Q 023081 118 MIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQA 196 (287)
Q Consensus 118 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g 196 (287)
++|. ++.+++.+|.+|...|++++|+..|+++++++|++..++ .++.++..++
T Consensus 302 ~~p~--------------------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 302 IDPS--------------------------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp TCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hCch--------------------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 7664 789999999999999999999999999999999998776 8999999888
Q ss_pred CHHHHHH
Q 023081 197 RYTEARS 203 (287)
Q Consensus 197 ~~~~A~~ 203 (287)
+.+++..
T Consensus 356 ~~~~a~k 362 (370)
T 1ihg_A 356 AQKDKEK 362 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=105.25 Aligned_cols=141 Identities=10% Similarity=-0.066 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC----CHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG----RLDEQIEL 111 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 111 (287)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+.. ++ .....+|.+|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~--~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DG--DALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CH--HHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH--HHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3588899999875 678999999999999999999999999998764 34 578889999988 7 89999999
Q ss_pred HHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--chHH
Q 023081 112 LKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPD--ANKA 185 (287)
Q Consensus 112 ~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~--~~~~ 185 (287)
|+++.+.. ++.+++++|.+|.. .+++++|+.+|+++....+. ++.+
T Consensus 76 ~~~A~~~g----------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 76 AEKAVEAG----------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHTT----------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHCC----------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 99986542 68899999999998 89999999999999998884 3555
Q ss_pred H-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 186 C-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 186 ~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+ +||.+|.. .+++++|+.+|+++++.
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 4 99999998 88999999999999986
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=111.81 Aligned_cols=111 Identities=18% Similarity=0.145 Sum_probs=90.6
Q ss_pred hHhhcCCCCch-----HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 10 HVVHKLPPGDS-----PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 10 ~~l~~~p~~~~-----~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
+++...|.+.. ++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+..+++
T Consensus 39 ~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 118 (373)
T 1hz4_A 39 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118 (373)
T ss_dssp HHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566665543 57789999999999999999999999865432 24477899999999999999999999
Q ss_pred HHHhchhh------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 79 FRHLCSKQ------AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 79 ~~~~~p~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
++...+.. .....+..+|.++...|++++|...+++++...+
T Consensus 119 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 99886421 1224677899999999999999999999998765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-15 Score=126.15 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
.++..+|.++...|++++|+..|+++++.+|++. .++..+|.+|...|++++|+..++++++++|.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------ 72 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKK------------ 72 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------
Confidence 4466778889999999999999999999999987 78999999999999999999999998887664
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHH--HHhccCHHHHHHHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHC--LIKQARYTEARSVLE 206 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~--~~~~g~~~~A~~~~~ 206 (287)
++.+++++|.+|...|++++|+..|+++++.+|++...+ +++.+ +..+|++++|+..++
T Consensus 73 --------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 --------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 789999999999999999999999999999999997776 77777 888999999999999
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-12 Score=109.68 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=141.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----------------DSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
|.+.+..|..+...|++++|++.|.++++..|.. ..++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999999987653 24688999999999999999999999988
Q ss_pred hchhh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 82 LCSKQ----AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 82 ~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
..+.. ....+...++.++...|++++|+..+++++...+ .....+....++..+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------REKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH--------------------HSSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------------HhCccHHHHHHHHHHHH
Confidence 76532 1223566778888889999999999999988754 22223334778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC------chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPD------ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~------~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...|+|.+|+..+++++..... ....+ .+|.+|..+|++++|..++++++...
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 999999999999999998874221 12333 79999999999999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=93.10 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
+|+++.++..+|.++...|++++|+..++++++..|.+. .++..+|.++...|++++|+..|+++++..|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------- 72 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINVIED------- 72 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-------
Confidence 466667777888888888888888888888888877665 56777777888888888888887776665441
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK-GNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~ 182 (287)
..++.++..+|.++... |++++|+.++++++...|.+
T Consensus 73 -----------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 73 -----------------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -----------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred -----------------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 00567777788888888 88888888888887777764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=113.82 Aligned_cols=125 Identities=10% Similarity=-0.002 Sum_probs=114.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAIN----------------AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
...+..+|..+...|++++|+..|+++++ .+|....++.++|.++...|++++|+.+++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 67778899999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
+|+++ .++..+|.+|...|++++|+..|++++++.|. +..++..++.++...
T Consensus 303 ~p~~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--------------------------~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 303 DPSNT--KALYRRAQGWQGLKEYDQALADLKKAQEIAPE--------------------------DKAIQAELLKVKQKI 354 (370)
T ss_dssp CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHH
Confidence 99887 78999999999999999999999998888764 788899999999999
Q ss_pred CCHHHHHHH
Q 023081 163 GNYTSAEVV 171 (287)
Q Consensus 163 g~~~~A~~~ 171 (287)
++++++...
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 888887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-13 Score=92.74 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
+++.+|.++...|++++|+..|++++...|++.. ..++..+|.++...|++++|+..|+++++..|..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~----------- 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH----------- 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-----------
Confidence 4677888888888888888888888888886531 1367778888888888888888888877776630
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
+..+.+++.+|.++...|++++|+..|++++...|+++...
T Consensus 73 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 73 ------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp ------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 00167788888888888888888888888888888876554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=115.15 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+..+..+|..+...|++++|+..|++++...|++. . +...|++.++...+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~---~-------~~~~~~~~~~~~~l------------------- 228 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF---M-------FQLYGKYQDMALAV------------------- 228 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH---H-------HTCCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch---h-------hhhcccHHHHHHHH-------------------
Confidence 356677888888888888888888888888877654 1 11123333333211
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+++++|.+|...|++++|+.+|++++.++|++..++ ++|.++..+|++++|+..|+++++
T Consensus 229 ----------------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 229 ----------------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ----------------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 134688999999999999999999999999999998776 999999999999999999999998
Q ss_pred cccCCC
Q 023081 211 GKLSGS 216 (287)
Q Consensus 211 ~~~~~~ 216 (287)
..+.+.
T Consensus 293 l~p~~~ 298 (338)
T 2if4_A 293 YAPDDK 298 (338)
T ss_dssp ------
T ss_pred HCCCCH
Confidence 854333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=108.13 Aligned_cols=163 Identities=11% Similarity=-0.006 Sum_probs=137.3
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhchhhh--H---
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDM-------AVVLKQQDRVDEAVEAIKSFRHLCSKQA--Q--- 88 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~~--~--- 88 (287)
..+..|.-+ ..+++..|.+.|.+++..+|+..++|.++ +.++...++..+++..+++.+.+.|... +
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 345666665 68999999999999999999999999999 8999999999999999999999888542 0
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 89 --------------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 89 --------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
..+...++.++...|+|++|.+.|..++...|. +. +.+.
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~--------------------------~~-~~~~ 140 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE--------------------------HL-VAWM 140 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH--------------------------HH-HHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--------------------------hH-HHHH
Confidence 234566888999999999999999887666553 56 8899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc--hHH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDA--NKA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+|.++.+.++|++|+..|+.+....+.. ..+ +++|.++..+|++++|+.+|++++..
T Consensus 141 ~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 141 KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999887653221 223 48999999999999999999999964
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-12 Score=108.26 Aligned_cols=184 Identities=12% Similarity=0.027 Sum_probs=141.0
Q ss_pred CCCchHHHHhHHhHHhhCCHHHH----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhhhH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAA----IVLFWKAINAGDRVDSALKDMAVVLKQQD---RVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A----~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~ 88 (287)
+.++.+.+.+|.++...+.++++ ..+++.+...+| .+++.+|.+|...| ++++|+.+|+++.+..|...
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a- 213 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA- 213 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-
Confidence 34577888888888887744444 444444444444 48999999999999 99999999999999988766
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccc-----hhhh-hc---CCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 89 ESLDNVLIDLYKKC----GRLDEQIELLKQKLRMIY-----HGEA-FN---GKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 89 ~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~-----~~~~-~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
..+..+|.+|... +++++|+.+|+++..-++ .+.. +. ......+...+++ + ..++++.+++++
T Consensus 214 -~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~-A--a~~g~~~A~~~L 289 (452)
T 3e4b_A 214 -QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDN-G--RAADQPRAELLL 289 (452)
T ss_dssp -HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH-H--HHTTCHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHCCCHHHHHHH
Confidence 5567888888665 799999999999982222 2333 21 2245666666665 2 345689999999
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 156 GWAYMQKG-----NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 156 g~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
|.+|. .| ++++|+.+|+++. +.++.+. +||.+|.. ..++++|+.+|+++.+.
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 99998 55 9999999999998 7777775 99999877 44999999999999976
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-14 Score=95.61 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=77.9
Q ss_pred hhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHH
Q 023081 31 VEKDPEAAIVLFWKAINA---GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDE 107 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 107 (287)
..|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+|+++++.+|+++ .++..+|.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--ALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHcCCHHH
Confidence 358899999999999999 588889999999999999999999999999999999887 788999999999999999
Q ss_pred HHHHHHHHHhccch
Q 023081 108 QIELLKQKLRMIYH 121 (287)
Q Consensus 108 A~~~~~~al~~~~~ 121 (287)
|+..|++++...|.
T Consensus 80 A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 80 GVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=93.69 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHh
Q 023081 65 QQDRVDEAVEAIKSFRHL---CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~ 141 (287)
..|++++|+..|+++++. +|++. .++..+|.+|...|++++|+..|+++++..|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------- 59 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA--ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-------------------- 59 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------
Confidence 357788888888888888 57766 67888888888888888888888887777654
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++.+++.+|.++...|++++|+..|++++...|+++...
T Consensus 60 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 60 ------HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp ------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred ------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 678888888888888888888888888888888876553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=96.86 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=82.3
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRV----------DEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
.+.+.+++|+..++++++.+|+++.++.++|.++...+++ ++|+..|+++++++|++. .+++.+|.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~--~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD--EAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH--HHHHHHHHHH
Confidence 3456799999999999999999999999999999998875 599999999999999988 8899999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHhccch
Q 023081 100 KKCG-----------RLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 100 ~~~g-----------~~~~A~~~~~~al~~~~~ 121 (287)
...| ++++|+.+|+++++++|.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 9875 899999999999999985
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=95.45 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=80.5
Q ss_pred HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 64 KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD----------EQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 64 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
.+.+.+++|+..++++++++|+++ ..+..+|.++...++++ +|+..|+++++++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~a--ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------------- 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------------
Confidence 355679999999999999999998 88999999999988765 6666666666555
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCchHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKG-----------NYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
|+...+|+++|.+|...| ++++|+.+|+++++++|++..++
T Consensus 77 ------------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 77 ------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 458999999999999885 89999999999999999986543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=108.40 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=140.1
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD------SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQES 90 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~ 90 (287)
++..+|.+|...|++++|++++.+++...+... .+...++.++...|++++|+.++++++...+.. .+..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 478999999999999999999999987654432 345678888888999999999999998876532 2346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
+...+|.+|...|+|++|...+++++.... .....+....++..+|.+|...|++++|..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFK--------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT--------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHH--------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence 788999999999999999999999887643 122233457889999999999999999999
Q ss_pred HHHHHHhhCC---Cch----HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 171 VYRKAQLIDP---DAN----KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 171 ~~~~al~~~~---~~~----~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+++++...+ +.+ ..+ .+|.++...|++++|..+|.++++..
T Consensus 197 ~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 197 SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999987543 221 122 68899999999999999999998765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-11 Score=111.24 Aligned_cols=189 Identities=17% Similarity=0.130 Sum_probs=118.0
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
.+.+.+|+.+|+++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .+...+
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~---~Idt~L 1173 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES---YVETEL 1173 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc---cccHHH
Confidence 467889999999999999999999999775 667889999999999999999999998887766432 122234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc---cchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRM---IYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
|.+|.+.+++++ ++.|...... ...|..+ ....+..|..++.. +..|..+|.++.+.|++++|++.
T Consensus 1174 afaYAKl~rlee-le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k---------A~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1174 IFALAKTNRLAE-LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHHHhhcCHHH-HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---------hhHHHHHHHHHHHhCCHHHHHHH
Confidence 555555555543 2222111100 0011111 22344445555442 34555666666666666666666
Q ss_pred HHHHHhhCC-------------------------CchHH-HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 172 YRKAQLIDP-------------------------DANKA-CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 172 ~~~al~~~~-------------------------~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
++++....+ .++.. ..++..|...|.+++|+.+++.++.. ++.|...+...
T Consensus 1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L---eraH~gmftEL 1320 (1630)
T 1xi4_A 1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTEL 1320 (1630)
T ss_pred HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---ChhHhHHHHHH
Confidence 655533222 11222 26778889999999999999999876 34444443333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=87.30 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=70.8
Q ss_pred CCccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 1 MSQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFR 80 (287)
Q Consensus 1 ~~~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 80 (287)
|..+.+.+.+++..+|+++.+++.+|.++...|++++|+..|++++..+|+.+.++..+|.++...|++++|+..|++++
T Consensus 1 ~~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455567888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred Hhchhh
Q 023081 81 HLCSKQ 86 (287)
Q Consensus 81 ~~~p~~ 86 (287)
...|..
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 888754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-12 Score=84.91 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=68.3
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|++++++.|...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-10 Score=102.06 Aligned_cols=204 Identities=8% Similarity=-0.016 Sum_probs=168.6
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAI-VLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC---- 83 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---- 83 (287)
.+.+...|..++.|+..+......|+.++|. ..|++++...|.....|..++......|++++|...|++++...
T Consensus 333 e~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~ 412 (679)
T 4e6h_A 333 MQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDL 412 (679)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 3588899999999999999999999999997 99999999999998899999999999999999999999998753
Q ss_pred -------hhh---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--hhhhh---------cCCChhHHHHH
Q 023081 84 -------SKQ---------AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY--HGEAF---------NGKPTKTARSH 136 (287)
Q Consensus 84 -------p~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~---------~~~~~~~a~~~ 136 (287)
|.+ ....+|...+.+..+.|+.+.|..+|.++++..| ....| .+...+.+...
T Consensus 413 ~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 413 AALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence 210 1124688888888888999999999999998722 11121 13346778888
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 137 GKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD---ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++. ++...|+++..|...+......|+.+.|..+|++++...|+ ....| .........|+.+.+..+.+++.+..
T Consensus 493 fe~-~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 493 LEL-GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHH-HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777 67778999999989999888999999999999999998874 34455 56777788899999999999999885
Q ss_pred c
Q 023081 213 L 213 (287)
Q Consensus 213 ~ 213 (287)
+
T Consensus 572 P 572 (679)
T 4e6h_A 572 P 572 (679)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-13 Score=90.25 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=84.5
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~ 93 (287)
+..+++.+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|++. ...++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999861 116777
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLK 113 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~ 113 (287)
.++.++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777765544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=80.22 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++. ..+..+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH--HHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999999887 778888
Q ss_pred HHHHHHcC
Q 023081 96 IDLYKKCG 103 (287)
Q Consensus 96 ~~~~~~~g 103 (287)
+.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88877654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-11 Score=82.38 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 37 AAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKL 116 (287)
Q Consensus 37 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 116 (287)
.|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++. ..+..+|.+|...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999887 789999999999999999999999999
Q ss_pred hccch
Q 023081 117 RMIYH 121 (287)
Q Consensus 117 ~~~~~ 121 (287)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 98773
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=99.28 Aligned_cols=133 Identities=7% Similarity=-0.010 Sum_probs=109.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc-----hhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLC-----SKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
..+..+..+|++++|+..++++++.. |+++ ....+..+|.+|..+|+|++|+.++++++++..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~----------- 382 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM----------- 382 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----------
Confidence 34556778999999999999998863 3332 236789999999999999999999999998743
Q ss_pred HHHHHHHHHhhhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCchHHH----HHHHHHHhccCHH
Q 023081 132 TARSHGKKFQVTVK---QETSRILGNLGWAYMQKGNYTSAEVVYRKAQL-----IDPDANKAC----NLSHCLIKQARYT 199 (287)
Q Consensus 132 ~a~~~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~----~l~~~~~~~g~~~ 199 (287)
.... |+....++++|.+|..+|++++|+..|++++. +.|+++... +++.++..++.++
T Consensus 383 ----------~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 383 ----------KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp ----------HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 1222 33566799999999999999999999999997 578887653 7999999999999
Q ss_pred HHHHHHHHHHhc
Q 023081 200 EARSVLEDVLLG 211 (287)
Q Consensus 200 ~A~~~~~~~l~~ 211 (287)
+|...|.++.+.
T Consensus 453 ~ae~~~~~~~~~ 464 (490)
T 3n71_A 453 QNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=106.60 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=125.2
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHh--------------------c--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAIN--------------------A--GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~--------------------~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+|.++...|.+++|...|+++-. . ..+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 47777777777777776665421 0 1345789999999999999999999999886
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-------hhhc-CCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-------EAFN-GKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
+++ ..+..++.++.+.|++++|+++|..+.+..+.. ..|. .........+. ..+ +...+..
T Consensus 1132 --dD~--say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI------~~~-n~ad~~~ 1200 (1630)
T 1xi4_A 1132 --DDP--SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI------NGP-NNAHIQQ 1200 (1630)
T ss_pred --CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH------hCC-CHHHHHH
Confidence 344 567779999999999999999999999877532 2221 12223222222 123 4456778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+|..+...|+|++|..+|.++ .....++.++.++|++++|++.++++...
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 999999999999999999996 13348999999999999999999998543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-10 Score=90.49 Aligned_cols=152 Identities=13% Similarity=0.018 Sum_probs=116.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS--KQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 38 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
|+..+++.+...+....++..+|.++...|++++|+.++.+.+..+| .+. .+....+.++...|+.+.|.+.++++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l--ea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--ELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH--HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66777777766555667778999999999999999999999998887 555 78889999999999999999999998
Q ss_pred HhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 116 LRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG--NYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 116 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
.+..|+.. .. .+...+...-|++....| ++.+|...|+++....|+..... .+. ++
T Consensus 163 ~~~~~d~~-----------~~---------~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~ 221 (310)
T 3mv2_B 163 TNAIEDTV-----------SG---------DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LH 221 (310)
T ss_dssp HHHSCHHH-----------HH---------HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HH
T ss_pred HhcCcccc-----------cc---------chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HH
Confidence 87766100 00 002333444466676666 99999999999988888732222 222 89
Q ss_pred HhccCHHHHHHHHHHHHhcc
Q 023081 193 IKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 193 ~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+|++++|...++.+++..
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHH
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999877653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.8e-13 Score=109.71 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=56.9
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+.+...++.| .+.+|..+|.++...|++++|++.|.++ .++..+..++.++...|++++|+.+++.+++..++
T Consensus 21 ~A~~fae~~~-~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~- 93 (449)
T 1b89_A 21 RAYEFAERCN-EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-
Confidence 3344444443 4569999999999999999999999764 34568889999999999999999999988886444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
+ .+...++.+|.+.|+++++.+.++. |++..+ ....++.|..++.. ...|..+|.+
T Consensus 94 ~--~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~---------a~n~~~LA~~ 157 (449)
T 1b89_A 94 S--YVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLAST 157 (449)
T ss_dssp -----------------CHHHHTTTTTC-----C----------------CTTTHHHHHHH---------TTCHHHHHHH
T ss_pred c--hhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHH---------hhhHHHHHHH
Confidence 4 5677788899999999998887753 332222 23356677777764 3567788888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
+.+.|++++|++.++++ .++..| ....++...|+++.|..+...
T Consensus 158 L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888888888888887 356666 677888888888888655443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=93.40 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=100.7
Q ss_pred hHhhcCCCCchHH--HHhHHhHHhhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------HHHHHH-HH
Q 023081 10 HVVHKLPPGDSPY--VRAKHVQLVEKD---PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR-------VDEAVE-AI 76 (287)
Q Consensus 10 ~~l~~~p~~~~~~--~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-------~~~A~~-~~ 76 (287)
.+....|.+.++| +..|..++..++ ..+|+.+|+++++.+|+.+.++..++.+|..... ...++. .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 4556678877776 556777776544 5789999999999999999999988888853211 011111 11
Q ss_pred HHH--HHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 77 KSF--RHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 77 ~~~--~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
+.+ +...|..+ .++..++..+...|++++|+..+++++.++| +..++..
T Consensus 265 ~a~~a~~~~~~~a--~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~---------------------------s~~a~~l 315 (372)
T 3ly7_A 265 DNIVTLPELNNLS--IIYQIKAVSALVKGKTDESYQAINTGIDLEM---------------------------SWLNYVL 315 (372)
T ss_dssp HHHHTCGGGTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---------------------------CHHHHHH
T ss_pred HHHHhcccCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------------CHHHHHH
Confidence 111 13345545 5666666666667888888888888777765 4566677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
+|.++...|++++|++.|.+|+.++|..+..
T Consensus 316 lG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 316 LGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 7888888888888888888888888877543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.2e-11 Score=100.10 Aligned_cols=133 Identities=13% Similarity=0.012 Sum_probs=107.8
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----hhhh-HHHH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINA-----GDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-----SKQA-QESL 91 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-~~~~ 91 (287)
+..+..+|+|++|+.+++++++. +|++ ..++.+||.+|..+|++++|+.+++++++.. |+++ ....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466789999999999999964 3444 5678899999999999999999999998763 3332 2256
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC---cHHHHHHHHHHHHHcCCHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE---TSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A 168 (287)
++.+|.+|..+|++++|..+|++++++.. ....|+ ...+..+++.++..++.+++|
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~---------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILL---------------------VTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998843 233344 355567899999999999999
Q ss_pred HHHHHHHHhhC
Q 023081 169 EVVYRKAQLID 179 (287)
Q Consensus 169 ~~~~~~al~~~ 179 (287)
...|+++.+..
T Consensus 455 e~~~~~~~~~~ 465 (490)
T 3n71_A 455 EFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-12 Score=85.15 Aligned_cols=66 Identities=18% Similarity=0.072 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
+.++..+|.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|++++++.|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34566666666666666666666666666666555 5566666666666666666666666665554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=101.07 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=92.3
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
+++..+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++. |+. ..+..+|
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~---~a~~~IG 129 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PNN---AHIQQVG 129 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----CcH---HHHHHHH
Confidence 46679999999999999999999999988885444 57788899999999999998887752 543 4788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
..+...|.|++|..+|.++-.....+.++ .-..++.|.+.+++. +++.+|...+.++...|+++.|..+...
T Consensus 130 d~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~- 202 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 202 (449)
T ss_dssp -------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred HHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence 99999999999999999874333345555 344577777777762 4788999999999999999999776664
Q ss_pred HhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhc
Q 023081 176 QLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQEL 232 (287)
Q Consensus 176 l~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 232 (287)
+...|+. ...++.+|.+.|++++|+.+++.++.. ++.+...+....-+..+.
T Consensus 203 L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~l---e~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 203 IVVHADE--LEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKF 254 (449)
T ss_dssp TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTT
T ss_pred HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHhc
Confidence 3333433 236888899999999999999999976 456655555554444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.7e-11 Score=78.41 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=63.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++ ++|.++..+|++++|+..|+++++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3688999999999999999999999999999999999998886 89999999999999999999999874
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=74.73 Aligned_cols=85 Identities=26% Similarity=0.242 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
..+.++..+|.++...|++++|+.++++++...|++. .++..+|.++...|++++|+..|+++++..|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--------- 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------- 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------
Confidence 3567899999999999999999999999999999887 78899999999999999999999998887664
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
++.++..+|.++...|
T Consensus 76 -----------------~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 -----------------NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----------------CHHHHHHHHHHHHHHC
T ss_pred -----------------CHHHHHHHHHHHHhcC
Confidence 7888999999887654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-10 Score=78.02 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=88.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----cCCHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK----CGRLDE 107 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~ 107 (287)
.+++++|+.+|+++.+.++.. +. +|.+|...+.+++|+.+|+++.+.. ++ ...+.+|.+|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~--~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACELN--SG--NGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC--CH--HHHHHHHHHHHcCCCCCccHHH
Confidence 357888999998888876444 33 8888888888888988888888763 33 567788888888 788888
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 179 (287)
|+.+|+++.+.. ++.+++++|.+|.. .+++++|+.+|+++.+..
T Consensus 80 A~~~~~~Aa~~g----------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN----------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC----------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888887652 57788888888888 888888888888887763
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-11 Score=77.89 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=77.5
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.+..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|++. .++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~------ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP--ALQAR------ 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--HHHHH------
Confidence 367899999999999999999999999999999 999999999999999999999999999999876 33321
Q ss_pred HcCCHHHHHHHHHHHHhccc
Q 023081 101 KCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~ 120 (287)
+.+.+++..|+++....|
T Consensus 75 --~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHH
T ss_pred --HHHHHHHHHHHHHhccCc
Confidence 566777888887776665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-09 Score=92.66 Aligned_cols=181 Identities=8% Similarity=-0.018 Sum_probs=141.8
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc-----------CCC-----------CHHHHHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA-----------GDR-----------VDSALKDMAVVL 63 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------~~~-----------~~~~~~~la~~~ 63 (287)
+-+-+++..+|.+...++..+......|+++.|...|++++.. .|. ...+|...+...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 3344688899999888999999999999999999999999974 243 345788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccchhhhhc---------CCChhHH
Q 023081 64 KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG-RLDEQIELLKQKLRMIYHGEAFN---------GKPTKTA 133 (287)
Q Consensus 64 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a 133 (287)
.+.|+.+.|..+|.++++..|...+ .++...+.+-...+ +++.|..+|+.+++..|....+. ......+
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~-~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTP-DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCT-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999987332211 45666666666655 49999999999999988544331 2346677
Q ss_pred HHHHHHHhhhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHH
Q 023081 134 RSHGKKFQVTVKQ---ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNL 188 (287)
Q Consensus 134 ~~~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 188 (287)
...+++ ++...| ....+|......-...|+.+.+....+++.+..|+++..-.+
T Consensus 524 R~lfer-al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 524 KSLFES-SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHH-HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 777777 666666 356788888888889999999999999999999998655433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=75.02 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES-LDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
..|.++...|++++|+..|+++++.+|++. . ++..+|.+|...|++++|+..|+++++++|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGK--DEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344444555555555555555555555444 3 444445555555555555555554444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-09 Score=74.67 Aligned_cols=109 Identities=15% Similarity=0.050 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCC
Q 023081 67 DRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQ 146 (287)
Q Consensus 67 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (287)
+++++|+.+|+++.+...... . +|.+|...+.+++|+.+|+++.+..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~g--------------------------- 55 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG----C--LSLVSNSQINKQKLFQYLSKACELN--------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHTT---------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcCC---------------------------
Confidence 468999999999998865433 2 8999999899999999999988763
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 147 ETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 147 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
++.+++++|.+|.. .+++++|+.+|+++.+. .++..+ +||.+|.. .+++++|+.+|+++.+.
T Consensus 56 -~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 56 -SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 68899999999999 89999999999999876 555554 99999999 89999999999999987
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-09 Score=69.31 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=67.4
Q ss_pred cCCCCchHHHHhHHhHHhhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 14 KLPPGDSPYVRAKHVQLVEKD---PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+|++++.+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|++++|+.+++++++.+|..+
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 368999999999999987666 79999999999999999999999999999999999999999999999998754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.3e-09 Score=86.68 Aligned_cols=107 Identities=7% Similarity=0.016 Sum_probs=84.4
Q ss_pred HcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 101 KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE---TSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
..|+|++|+..+++++++.. ..+.|+ ...++.++|.+|..+|+|++|+.++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~---------------------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS---------------------SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT---------------------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhh---------------------CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 45789999999999988743 122333 466789999999999999999999999997
Q ss_pred -----hCCCchHH---H-HHHHHHHhccCHHHHHHHHHHHHhcc--cCCCCchhHHHHHHHHH
Q 023081 178 -----IDPDANKA---C-NLSHCLIKQARYTEARSVLEDVLLGK--LSGSTETKTINRVKELL 229 (287)
Q Consensus 178 -----~~~~~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~l 229 (287)
..|+++.. + +||.+|..+|++++|..+|++++++. ..+++|+.+ ..+...|
T Consensus 369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~-~~l~~~l 430 (433)
T 3qww_A 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI-SEIKQEI 430 (433)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH-HHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHH
Confidence 46677654 2 89999999999999999999999876 567788655 3344433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-08 Score=78.01 Aligned_cols=147 Identities=8% Similarity=-0.103 Sum_probs=102.3
Q ss_pred HHHhcCCCCHHH--HHHHHHHHHHcCC---HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH---cC-CHHHHHHHHHH
Q 023081 44 KAINAGDRVDSA--LKDMAVVLKQQDR---VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK---CG-RLDEQIELLKQ 114 (287)
Q Consensus 44 ~al~~~~~~~~~--~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~---~g-~~~~A~~~~~~ 114 (287)
++....|.++.+ ++..|..+...++ +.+|+.+|+++++++|+.+ .++..++.+|.. .+ ........+..
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a--~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT--YARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 344445666554 4455666665554 5899999999999999987 344444444431 11 11111111222
Q ss_pred HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHh
Q 023081 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIK 194 (287)
Q Consensus 115 al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 194 (287)
++.. . .++...|.++.++..++..+...|++++|+..+++++.++|+......+|.++..
T Consensus 263 a~~a------------------~--~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 263 EIDN------------------I--VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHH------------------H--HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHH------------------H--HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2111 0 0456678899999999999999999999999999999999763322378999999
Q ss_pred ccCHHHHHHHHHHHHhcc
Q 023081 195 QARYTEARSVLEDVLLGK 212 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~~ 212 (287)
.|++++|+..|.+++...
T Consensus 323 ~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999999983
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.7e-07 Score=77.25 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=129.1
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHh--chhhhHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDR---------VDEAVEAIKSFRHL--CSKQAQE 89 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~~~~--~p~~~~~ 89 (287)
+..+-..+...|+.++|+++|+++.+.+ +-+...+..+-.++...+. .++|.+.|++.... .|+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~--- 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE--- 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH---
Confidence 4444466778999999999999998765 2234677777777765543 78999999998765 3554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..++.+...|.+.|++++|.++|+++.+..- .| +..+|..+-..|.+.|++++|.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------~P-d~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------QP-RLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------------------------CC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------CC-ccceehHHHHHHHHCCCHHHHH
Confidence 4788999999999999999999998876421 11 5778889999999999999999
Q ss_pred HHHHHHHhhC--CCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLID--PDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|+++.+.. |+...+..|..++.+.|+.++|..++++..+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 9999998754 444444478999999999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-08 Score=80.36 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=89.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----chhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHL-----CSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..-+...|++++|+..++++++. .|+++ ....+..++.+|..+|+|++|+.++++++++...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~------------ 361 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI------------ 361 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH------------
Confidence 44566789999999999999875 33433 2367889999999999999999999999987431
Q ss_pred HHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCchHHH----HHHHHHHh
Q 023081 134 RSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL-----IDPDANKAC----NLSHCLIK 194 (287)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~----~l~~~~~~ 194 (287)
.+ ...|.....++++|.+|..+|++++|+..|+++++ +.|+++... +|+.+...
T Consensus 362 -------~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 362 -------FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp -------HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 00 12233466789999999999999999999999997 467776543 56666543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.6e-08 Score=63.27 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccC
Q 023081 145 KQETSRILGNLGWAYMQKGN---YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLS 214 (287)
Q Consensus 145 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 214 (287)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+. .+|..++..|++++|+.+|+++++..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999986666 7999999999999999998886 8999999999999999999999998654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-08 Score=82.64 Aligned_cols=90 Identities=12% Similarity=-0.026 Sum_probs=75.6
Q ss_pred HhhCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----hhhh-HHHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINA-----GDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-----SKQA-QESLDNVL 95 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-~~~~~~~l 95 (287)
...|+|++|+..|+++++. .|++ ..++.+||.+|..+|++++|+.++++++... |+++ ....++.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3458899999999999974 3555 5678899999999999999999999998762 2332 22568899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
|.+|..+|++++|+.+|++++++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=73.58 Aligned_cols=86 Identities=9% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhC
Q 023081 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK-----GNYTSAEVVYRKAQLID 179 (287)
Q Consensus 105 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~ 179 (287)
...|...++++++++|... +..+|..+|.+|... |+.++|..+|+++++++
T Consensus 179 l~~A~a~lerAleLDP~~~------------------------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln 234 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ------------------------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC 234 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH------------------------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCcc------------------------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC
Confidence 5789999999999998654 578888899999995 99999999999999999
Q ss_pred CCc-hHHH-HHHHHHHh-ccCHHHHHHHHHHHHhcccC
Q 023081 180 PDA-NKAC-NLSHCLIK-QARYTEARSVLEDVLLGKLS 214 (287)
Q Consensus 180 ~~~-~~~~-~l~~~~~~-~g~~~~A~~~~~~~l~~~~~ 214 (287)
|+. ...+ .+|..+.. .|++++|..++++++...+.
T Consensus 235 P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 235 SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 975 6665 78888877 59999999999999988644
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-07 Score=69.84 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc
Q 023081 127 GKPTKTARSHGKKFQVTVKQET-SRILGNLGWAYMQ-KGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~ 182 (287)
+...+.+..++++ ++.++|+. ..+++..|..+.. .|++++|..++++++..+|..
T Consensus 217 gGd~ekA~~~fer-AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 217 GGGMEKAHTAFEH-LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCCHHHHHHHHHH-HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCCHHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 4567778888887 78888864 8888888888777 488888888888888877663
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.4e-08 Score=80.69 Aligned_cols=106 Identities=8% Similarity=0.017 Sum_probs=84.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.-+..+|+|++|+..+++++++... .+ ..+|....++.++|.+|..+|+|++|+.+++++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~-------------------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSE-------------------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSC-------------------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccC-------------------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3456789999999999999987431 00 112234677899999999999999999999999
Q ss_pred Hh-----hCCCchHH---H-HHHHHHHhccCHHHHHHHHHHHHhcc--cCCCCchhH
Q 023081 176 QL-----IDPDANKA---C-NLSHCLIKQARYTEARSVLEDVLLGK--LSGSTETKT 221 (287)
Q Consensus 176 l~-----~~~~~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~ 221 (287)
+. ..|+++.. + +||.+|..+|++++|..+|++++++. ..+++|+.+
T Consensus 356 L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 356 MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 97 35666654 2 89999999999999999999999876 567777655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.7e-08 Score=64.15 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=65.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++.-++.+|..++..++|..|+.+|+.|+... +..+.++..+|.++.+.|++++|+.++++++...|++. .
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~--~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ--R 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--H
Confidence 45668899999999999999999999999753 34578899999999999999999999999999999886 4
Q ss_pred HHHHH
Q 023081 91 LDNVL 95 (287)
Q Consensus 91 ~~~~l 95 (287)
+...+
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 44444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=64.78 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-h-hhhHHHHHHHHHHHHHHcCCHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD---RVDEAVEAIKSFRHLC-S-KQAQESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~~~l~~~~~~~g~~~~A 108 (287)
....+.+.|.+.+..++.+.++.+++|+++.+.+ +.++++..++.+++.+ | ++. ...+.+|..|.+.|+|++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r--d~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR--DYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchH--HHHHHHHHHHHHccCHHHH
Confidence 3556777777777777878888888888888887 5668888888888887 6 334 6778888888888899999
Q ss_pred HHHHHHHHhccch
Q 023081 109 IELLKQKLRMIYH 121 (287)
Q Consensus 109 ~~~~~~al~~~~~ 121 (287)
.+++++++++.|.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9988888888874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-07 Score=61.97 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
-...+|..++..|+|..|+.+|+++++..+. .....+..+.++..+|.++.+.|++++|+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~-------------------~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDE-------------------GEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------------TCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhc-------------------cCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 4567899999999999999999999987432 001123357889999999999999999999
Q ss_pred HHHHHHhhCCCchHHH-HHH
Q 023081 171 VYRKAQLIDPDANKAC-NLS 189 (287)
Q Consensus 171 ~~~~al~~~~~~~~~~-~l~ 189 (287)
++++++.+.|++..+. +++
T Consensus 68 ~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 68 LTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHhhHH
Confidence 9999999999997774 554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.8e-08 Score=67.45 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=73.7
Q ss_pred ccchhhHhhcCCCCchHHHHhHHhHHhhC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEK---DPEAAIVLFWKAINAG-D-RVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
+.+....+...|.+.++.++.|.++...+ +..+++..++..++.+ | +..++++.+|..+++.|+|++|+.+++++
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33444566778889999999999999988 6779999999999988 6 56899999999999999999999999999
Q ss_pred HHhchhhh
Q 023081 80 RHLCSKQA 87 (287)
Q Consensus 80 ~~~~p~~~ 87 (287)
++..|++.
T Consensus 98 L~ieP~n~ 105 (152)
T 1pc2_A 98 LQTEPQNN 105 (152)
T ss_dssp HHHCTTCH
T ss_pred HhcCCCCH
Confidence 99999886
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=6e-06 Score=70.85 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=69.6
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL------- 82 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 82 (287)
+++...|..+..|+..+......|+.+.|...|++++.. |.....+...+... ..+ +. ++++...
T Consensus 204 ~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHHHTC-----
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHHHHHhhccc
Confidence 477788999999999999999999999999999999999 98876666544431 111 11 2222111
Q ss_pred -----chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 83 -----CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 83 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
.+..+ ..+|...+....+.++.+.|...|.++
T Consensus 276 ~~~~~~~~~~-~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 276 SAEKVFSKEL-DLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp -----CHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhhhccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 11111 246777777877888999999999999
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-05 Score=68.76 Aligned_cols=166 Identities=9% Similarity=-0.025 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
.......|++++...|..+..|...+..+...|+.++|..+|++++.. |.+. .++...+.. .+.++....+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~--~l~~~y~~~----~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM--FLSLYYGLV----MDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS--HHHHHHHHH----TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH--HHHHHHHhh----cchhHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999 9765 344433332 111111111111
Q ss_pred HHhcc--------c---hhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 023081 115 KLRMI--------Y---HGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-NYTSAEVVYRK 174 (287)
Q Consensus 115 al~~~--------~---~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 174 (287)
..... + ....| .....+.+...+.+ + ...+....+|...|.+-...+ +++.|...|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~-A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE-L-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-H-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH-h-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 11000 0 00111 01124556666665 3 222235667777777766666 69999999999
Q ss_pred HHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 175 AQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 175 al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
+++..|+.+..| ..+......|+.+.|...|+++.
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999887776 66777788999999998888863
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.24 E-value=8.7e-05 Score=51.54 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKE 227 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (287)
...|...+.. ...++.++|.+.|+.+++....+...| ..|....++|+...|.+.+.+++.. .+.....++.+..
T Consensus 61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~---~~k~~~~le~a~~ 136 (161)
T 4h7y_A 61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER---GAVPLEMLEIALR 136 (161)
T ss_dssp HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCBCHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CCCcHHHHHHHHH
Confidence 3334444433 344566666666666665555554444 4555556666666666666666654 3334444444444
Q ss_pred HHHh
Q 023081 228 LLQE 231 (287)
Q Consensus 228 ~l~~ 231 (287)
.|..
T Consensus 137 nl~~ 140 (161)
T 4h7y_A 137 NLNL 140 (161)
T ss_dssp HHHT
T ss_pred hhhc
Confidence 4443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00013 Score=62.57 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 33 KDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 33 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
++.+.|.+.|++....+ +-+..++..+...|.+.|++++|..+|++..+. .|+. ..++.+...|.+.|+.++|.
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL---RSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc---ceehHHHHHHHHCCCHHHHH
Confidence 34788999999988765 224578999999999999999999999998765 3553 57888999999999999999
Q ss_pred HHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 110 ELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 110 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
++|+.+.+..- .| +..+|..+..++.+.|++++|...+++.-+..
T Consensus 161 ~l~~~M~~~G~------------------------~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 161 EVDAHMVESEV------------------------VP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTC------------------------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC------------------------CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 99999876421 12 57788999999999999999999999987654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=54.43 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-hhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDE---AVEAIKSFRHLC-SKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
....+.+.|.+....++...++.+++|+++.+..+... ++..++..+... |... -...+.+|..+++.|+|++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~-Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555555555555666666666666555443 666666666555 4211 145555666666666666666
Q ss_pred HHHHHHHhccc
Q 023081 110 ELLKQKLRMIY 120 (287)
Q Consensus 110 ~~~~~al~~~~ 120 (287)
.+++..++..|
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 66666666665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.8e-05 Score=53.92 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=74.7
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch---hhh
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAG---DRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---KQA 87 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~ 87 (287)
.+++.-.+..+..+.|+.|+-....++... |+. .+++..+|.+++..|+|.+|...|++++.... +..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456777788889999999999998876543 332 34788999999999999999999999876522 110
Q ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 88 --------------------QESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 88 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
..++.+.++.||.+.|++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 115778899999999999999998774
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=50.79 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=87.6
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDP------EAAIVLFWKAINAGDRV--------DSALKDMAVVLKQQDRVDEAVEAIK 77 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~ 77 (287)
|-..|++++.|+.........|++ ++-++.|++|+..-|-. +..|...|.. ...++.++|.+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 445799999999988888888999 99999999999866542 4556667755 56699999999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++..+...+ .+|...|..-.++|+..+|.+.+.+++.+.|
T Consensus 85 ~a~~~hKkFA--Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 85 MARANCKKFA--FVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHCTTBH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHH--HHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 9998865554 7899999999999999999999999999877
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.1e-05 Score=50.45 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=70.2
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEA---AIVLFWKAINAG-D-RVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
+....+...+.+..+.+.+|..+....+... ++.+++..+..+ | ..-+.++.||..+++.|+|++|..+++.+++
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344566677889999999999999887777 999999998876 5 4568899999999999999999999999999
Q ss_pred hchhhh
Q 023081 82 LCSKQA 87 (287)
Q Consensus 82 ~~p~~~ 87 (287)
..|++.
T Consensus 103 ~eP~n~ 108 (126)
T 1nzn_A 103 TEPQNN 108 (126)
T ss_dssp HCTTCH
T ss_pred hCCCCH
Confidence 999886
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00018 Score=50.98 Aligned_cols=118 Identities=8% Similarity=-0.074 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-c
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-N 126 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~ 126 (287)
+++.-...+...|.|+.|+-....++....+++ ...+...+|+.++..|+|..|...|+++++......-. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455566777889999999999998877643321 23478889999999999999999999998864310000 0
Q ss_pred CC-ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 127 GK-PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 127 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.. ... ....... ... .+.+.++.+.++.||.+.|++++|+..++.+
T Consensus 102 ~~~~~~-~~ss~p~-s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTG-NSASTPQ-SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccc-ccCCCcc-ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 00 000 0000000 000 1234577788888888888888888887654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0043 Score=55.48 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=88.3
Q ss_pred HHcCC-HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccchh-hhhcCCChhHHHHHHHHH
Q 023081 64 KQQDR-VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHG-EAFNGKPTKTARSHGKKF 140 (287)
Q Consensus 64 ~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~~~ 140 (287)
...|+ ++.|+..+++....+|..... +...+..+.... .+--+|+..+.++++..... ..........
T Consensus 259 ~~t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~-------- 329 (754)
T 4gns_B 259 AITPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS-------- 329 (754)
T ss_dssp HTCGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH--------
T ss_pred cccccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc--------
Confidence 34555 688999999999999975411 111222222222 23456777777776532100 0000000000
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 141 QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 141 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
....|-....+...+..+...|+++-|+...++++...|..-..| .|+.+|..+|+++.|+-.++.+-
T Consensus 330 -~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 -ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred -ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 000111344667778888899999999999999999999998888 89999999999999998887763
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0013 Score=44.75 Aligned_cols=67 Identities=9% Similarity=-0.084 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 53 DSALKDMAVVLKQQDR---VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
+++.+++|+++.+..+ ..+++..++..+...|... ....+.++..+.+.|+|++|..+.+..++..|
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~-Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3555555555555543 2345555555555554221 13455555555555555555555555555555
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0018 Score=44.58 Aligned_cols=69 Identities=4% Similarity=-0.046 Sum_probs=34.7
Q ss_pred CchHHHHhHHhHHhhCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 18 GDSPYVRAKHVQLVEKDP---EAAIVLFWKAINAGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+..+.|+.|.......+. .+++.+++..+...|. .-+.++.||..+++.|+|++|..+.+.+++..|++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 344455555555444322 2455555555554442 23445555555555555555555555555555544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.022 Score=46.98 Aligned_cols=174 Identities=13% Similarity=0.060 Sum_probs=120.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhh--hHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS-----ALKDMAVVLKQ-QDRVDEAVEAIKSFRHLCSKQ--AQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~--~~~~ 90 (287)
..+.+.+|..|...|++++-.+++......-+..+. ....+-..+.. .+..+.-++.+..+++...+. .|..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999988888766544333322 22334444433 355666677777777654433 1112
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 91 --LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 91 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
+-..+|.+|...|+|.+|...+.+.++-... +.....-.+++.....+|...+++.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~--------------------~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKK--------------------LDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------------------SSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--------------------cccchhHHHHHHHHHHHHHHhccHHHH
Confidence 3447899999999999999999888765321 000011356677788899999999999
Q ss_pred HHHHHHHHhhC---CCchHH---H--HHHHHHH-hccCHHHHHHHHHHHHhcc
Q 023081 169 EVVYRKAQLID---PDANKA---C--NLSHCLI-KQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 169 ~~~~~~al~~~---~~~~~~---~--~l~~~~~-~~g~~~~A~~~~~~~l~~~ 212 (287)
...+.++.... +.++.. . .-|..+. ..++|..|...|-++.+.+
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 99999887643 122322 1 5688888 8999999999999988654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.012 Score=54.19 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..++.+.+.|++.|+.++|..+|..+.+... ... .-+..+|+.+...|.+.|++++|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~---------------------kG~-~PdvvTYNtLI~Glck~G~~~eA~ 185 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ---------------------KRK-LLTLDMYNAVMLGWARQGAFKELV 185 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH---------------------HHT-TCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh---------------------cCC-CCCHhHHHHHHHHHHhCCCHHHHH
Confidence 4688899999999999999999987654311 001 116888999999999999999999
Q ss_pred HHHHHHHhhC--CCchHHHHHHHHHHhccCH-HHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLID--PDANKACNLSHCLIKQARY-TEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~--~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~ 212 (287)
+.|+++.... |+...+..+..++.+.|+. ++|..+|++..+..
T Consensus 186 ~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 9999998754 5444444677788888984 78899999998864
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.011 Score=40.16 Aligned_cols=70 Identities=4% Similarity=-0.047 Sum_probs=61.7
Q ss_pred CchHHHHhHHhHHhhCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 18 GDSPYVRAKHVQLVEKDP---EAAIVLFWKAINAGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
++.+-++.|.......+. ..++.+++..++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 568889999988877654 5799999999988884 478899999999999999999999999999999886
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.037 Score=49.58 Aligned_cols=114 Identities=9% Similarity=0.060 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHhc--------hh--------hhHHHHHHHH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLK--QQ-DRVDEAVEAIKSFRHLC--------SK--------QAQESLDNVL 95 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~~~~~--------p~--------~~~~~~~~~l 95 (287)
++.|+..+++....+|.. .+++..+.+.. .. .+--+|+..+.+.++.. +. +....+....
T Consensus 265 ~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 688999999999988876 34333333322 12 23456777777766421 10 0111356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+..+...|+++-|+.+.++++...|. .-..|..|+.+|..+|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs--------------------------eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD--------------------------SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch--------------------------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 88888999999999999998777664 7899999999999999999999887765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.018 Score=52.92 Aligned_cols=98 Identities=8% Similarity=-0.067 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
..+..+-..|.+.|+.++|...|.+..+. .|+- ..|+.+...|++.|+.++|.++|+++.+..-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv---vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-------- 196 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL---DMYNAVMLGWARQGAFKELVYVLFMVKDAGL-------- 196 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence 45778889999999999999999776533 3443 5899999999999999999999999876431
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhC
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY-TSAEVVYRKAQLID 179 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~ 179 (287)
.| +..+|+.+-.++.+.|+. ++|...|+++....
T Consensus 197 ----------------~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 197 ----------------TP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp ----------------CC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ----------------CC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 12 577788888888888874 78889999888754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.094 Score=43.32 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=78.6
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhc---CC-ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFN---GK-PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
....|+.+.|...+++++.+.. |..+. .. ........++.. ...+...++..+...|++.+|+..+..
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~r-G~~L~~~~~~~w~~~~r~~l~~~-------~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWR-GPVLDDLRDFQFVEPFATALVED-------KVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC-SSTTGGGTTSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456899999999999999864 22221 11 111212222221 245567788899999999999999999
Q ss_pred HHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 175 AQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 175 al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++..+|-+...+ .+..++...|+..+|+..|+++...
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998887 8999999999999999999887654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.1 Score=40.18 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=49.4
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..+..|+.++|+......++.+|.++.....+...+.-.|++++|...++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 345678888888888888888888888888888888888888888888888888888653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.1 Score=35.96 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCch-HH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 146 QETSRILGNLGWAYMQKGNY---TSAEVVYRKAQLIDPDAN-KA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..++.+.+++||++.+..+. .+++..++..+...|... +. +.||..+.++|+|++|..+.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44789999999999988765 579999999999888653 33 48999999999999999999999998
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.12 Score=36.70 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=110.6
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--ch------
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH--L--CS------ 84 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~--~p------ 84 (287)
.|..++-.+.++......|.+..++-.+. .-+...+.+.-+.||....++..|+..++..++ . +|
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 45556677788888999999999987763 345677888899999999999999999999983 2 22
Q ss_pred -------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-----hhhcCC-ChhHHHHHHHHHhhhcCCCc--H
Q 023081 85 -------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-----EAFNGK-PTKTARSHGKKFQVTVKQET--S 149 (287)
Q Consensus 85 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~-~~~~a~~~~~~~~~~~~~~~--~ 149 (287)
.+- .-.+..+|.+....|+.++|+.+|.......+.- ..+.++ ....-.+-+. ..+... .
T Consensus 104 ~~ffvd~~Dk-EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~----~~~~~~i~~ 178 (242)
T 3kae_A 104 QEMFVDPGDE-EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVR----QTGRRGIEE 178 (242)
T ss_dssp HTTSCCTTCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---------------CHHH
T ss_pred ceeeeccchH-HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHH----hhhhccchh
Confidence 111 1357789999999999999999999999988732 222121 1000000000 000000 0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH--HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC--NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..+......+..... ...++-...-|.....+ +.+..+..+|-.++....|..+-+.
T Consensus 179 ~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 179 EYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp HHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 111111122221111 33344444456655443 6777788888888888888766554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.047 Score=44.99 Aligned_cols=102 Identities=9% Similarity=-0.011 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhch----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCS----KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
..+|..|...|+|.+|...+.+..+... ......++.....+|...+++.++...+.++.....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~------------ 170 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN------------ 170 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc------------
Confidence 3789999999999999999999987533 223446788888999999999999999999876632
Q ss_pred HHHHHHHHhhhcCCC-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 023081 133 ARSHGKKFQVTVKQE-TSRILGNLGWAYM-QKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 133 a~~~~~~~~~~~~~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 178 (287)
++..+|. .+.+...-|..+. ..++|.+|...|-+++..
T Consensus 171 --------ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 171 --------AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp --------HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred --------cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 1111111 2445666788888 899999999999998753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.17 Score=36.38 Aligned_cols=54 Identities=11% Similarity=-0.105 Sum_probs=37.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
+++..+.+ .+..|+++.|.+..+.. ++...|..||......|+++-|..+|.++
T Consensus 7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34444444 34567888887776544 45577888888888888888888877765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.079 Score=43.76 Aligned_cols=91 Identities=12% Similarity=0.004 Sum_probs=72.2
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCC--------C--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDR--------V--------------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
|......|+.+.|...+.+++.+... . ..+...++..+...|++.+++..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33444568999999999999976411 1 1223356778889999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
|-+- .++..+..++...|+..+|+..|+++...
T Consensus 202 P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 202 PYRE--PLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp TTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9665 67888888999999999999999987664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.28 Score=41.33 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+...++.+|...|++.+|...+.....-... . .....-..++.....++...+++.+|.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~------~--------------~~~~~kve~~l~q~rl~l~~~d~~~a~ 197 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYG------S--------------MEMSEKIQFILEQMELSILKGDYSQAT 197 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS------S--------------SCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh------c--------------ccHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44567888899999999998888876532100 0 000002566778889999999999999
Q ss_pred HHHHHHHh---hCCCchHH---H--HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQL---IDPDANKA---C--NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~---~~~~~~~~---~--~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++++.. ..+.++.. + ..|..+...++|.+|..+|..+....
T Consensus 198 ~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 198 VLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 99998742 23333322 2 68899999999999999999998764
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.029 Score=47.82 Aligned_cols=78 Identities=6% Similarity=-0.055 Sum_probs=63.2
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.+..+|.+......+..|..+|.+|+...|+....+..||.+....|+.-+|+-+|.+++......+ .+..++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~--~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP--AASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH--HHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh--hHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999987643333 34444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.34 Score=43.82 Aligned_cols=75 Identities=9% Similarity=-0.095 Sum_probs=46.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC 102 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 102 (287)
..+...+...|.++.|+...+ ++...+ ......|++++|.+..+.. ++. ..|..+|..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~~-----~~~--~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTDE-----SAE--MKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTTC-----CCH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHhh-----CcH--hHHHHHHHHHHHc
Confidence 444455566677777665441 222222 2345678888887765432 222 4677788888888
Q ss_pred CCHHHHHHHHHHH
Q 023081 103 GRLDEQIELLKQK 115 (287)
Q Consensus 103 g~~~~A~~~~~~a 115 (287)
|+++.|..+|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 8888888887775
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.18 Score=36.32 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
++...+.+| ...|+++.|.+..+.. ++. ..|..+|......|+++-|..+|.++-..
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDS--ITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 345555554 4779999999987654 223 57899999999999999999999986554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.33 Score=37.44 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=52.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 62 VLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 62 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
...+.|.+++|++.....++.+|.+. .....+.++++-.|+|++|...++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da--~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 45678999999999999999999988 78888899999999999999999999999884
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.88 Score=41.11 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=42.7
Q ss_pred HHhHHhhCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC
Q 023081 26 KHVQLVEKDPEAAIV-LFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 26 g~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
.......+++++|.+ .+ ..-|+ ......++..+...|..++|+...+ +|.. .+ .+....|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~-----~~~~---~f-----~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNISP-----DQDQ---KF-----ELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHCC-----CHHH---HH-----HHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecCC-----Ccch---he-----ehhhhcCC
Confidence 344566889988876 44 11110 1233677777888899998887553 2321 11 23455699
Q ss_pred HHHHHHHHH
Q 023081 105 LDEQIELLK 113 (287)
Q Consensus 105 ~~~A~~~~~ 113 (287)
+++|.+..+
T Consensus 668 ~~~A~~~~~ 676 (814)
T 3mkq_A 668 LTLARDLLT 676 (814)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.077 Score=44.48 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=78.8
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch---h-hhHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG---DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---K-QAQESL 91 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~-~~~~~~ 91 (287)
..++..+|..+...|+++.|.+.|.++.... ....+.+..+..++...+++..+..++.++..... + .....+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4577889999999999999999999987643 23367888899999999999999999999966532 1 122234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
....|.++...++|.+|...|..++...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 5556777778899999999998876643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.04 Score=46.22 Aligned_cols=108 Identities=15% Similarity=0.003 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
...++..+|..|...|++++|.+.|.++....... ....++..+..++...+++..+...+.++-.....+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-------- 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-------- 201 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence 34578899999999999999999999998765422 122577788889999999999999999986553210
Q ss_pred hHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 131 KTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
.+|. ........|..+...++|.+|...|-.++....
T Consensus 202 -------------~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 202 -------------GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp -------------CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred -------------CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 0000 122334467778889999999999988876443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.46 Score=39.98 Aligned_cols=97 Identities=7% Similarity=-0.041 Sum_probs=76.5
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG--DR----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQES 90 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~ 90 (287)
...++.++...|++.+|...+....... .. -.+.+.....+|...+++.+|...+.++... .|......
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 4678999999999999999998875321 11 1567888899999999999999999987432 11223335
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
++...|.++...++|.+|-.+|..++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6788899999999999999999998875
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.2 Score=42.75 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
....+|++......+..|..+|.+|..+.|. +...++.+|.+....|+.-+|+-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~--------------------------~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS--------------------------NGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------BSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC--------------------------CCchHHHHHHHHhcccccHHHHH
Confidence 4556777777777777777777777666554 78888999999999999999998
Q ss_pred HHHHHHhhCCCchHHH-HHHHHHH
Q 023081 171 VYRKAQLIDPDANKAC-NLSHCLI 193 (287)
Q Consensus 171 ~~~~al~~~~~~~~~~-~l~~~~~ 193 (287)
+|-+++......+.+. +|...+.
T Consensus 208 ~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 208 YYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhHHHHHHHHHH
Confidence 8888887655555554 6655554
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.8 Score=32.65 Aligned_cols=132 Identities=17% Similarity=-0.012 Sum_probs=86.1
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
.-.+++.++-+-.- +-|..++....++..++-.|++.+++-.+.. .+. . ...+.-..+|...++|..|+.
T Consensus 14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---lNT--~--Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---LNT--C--TSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT---CCB--H--HHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh---cch--H--HHHHHHHHHHHHHHHHHHHHH
Confidence 44677776543222 2334445677788899999999998876643 222 2 233345568999999999999
Q ss_pred HHHHHHh--c--cchhhhhcCCChhHHHHHHHHHhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 111 LLKQKLR--M--IYHGEAFNGKPTKTARSHGKKFQVTVKQETSR-ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 111 ~~~~al~--~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.++..++ . +|+.++- ++ ..-.+|.+.+ .+..+|.++...|+-++|+.++.......|-.+..
T Consensus 84 ~le~il~~kvd~d~~~d~~-----------~~--~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 84 SLESILEGKVERDPDVDAR-----------IQ--EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHH-----------HH--TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccCcccccc-----------cc--eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 9999994 2 2321100 00 1123455544 45668999999999999999999998888766544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.39 E-value=1.7 Score=41.27 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=69.5
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHHcCC
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-----------------------DRVDSALKDMAVVLKQQDR 68 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------~~~~~~~~~la~~~~~~g~ 68 (287)
+.-.|.++-..|.+|++++..|++++|..+|+++...- ...+..|..+..++.+.|.
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~ 914 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA 914 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC
Confidence 34456676677888889888999999988887763110 0113445667778888888
Q ss_pred HHHHHHHHHHHHHhchh---hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 69 VDEAVEAIKSFRHLCSK---QAQESLDNVLIDLYKKCGRLDEQIELLK 113 (287)
Q Consensus 69 ~~~A~~~~~~~~~~~p~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 113 (287)
++.+++..+.+++..+. +....++..+-..+...|+|++|...+.
T Consensus 915 ~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 915 YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 88888888888876432 1122356666666777788888877664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.00 E-value=1.8 Score=34.30 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----chhhhHHHHHHHHHHHHHHcCCH--H
Q 023081 35 PEAAIVLFWKAINAGDRV--DSALKDMAVVLKQQDRVDEAVEAIKSFRHL----CSKQAQESLDNVLIDLYKKCGRL--D 106 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~--~ 106 (287)
.++-+.-++..++.+.-. -+.+..++.=|.+.+++++|++.+...... .....-..+...+.++|.+.+.. +
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~ 92 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD 92 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 444444455544443221 122334555667778899999887666433 11222224555666777766543 4
Q ss_pred HHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 107 EQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV---KQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 107 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
+.+.-+.+.+...|...... .+-....+++ .... .-.++..+..+|..|++.|++.+|..+|-
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r---~~fi~~ai~W-S~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNL---KDVITGMNNW-SIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTH---HHHHHHHHHH-HHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchH---HHHHHHHHHH-HhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44555555555544211110 1111122222 2222 23489999999999999999999999884
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.90 E-value=1.4 Score=41.99 Aligned_cols=126 Identities=12% Similarity=-0.006 Sum_probs=85.6
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ch----------------
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL---CS---------------- 84 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p---------------- 84 (287)
.+.......+.++-+.++ +...|.++...+.+|.++...|++++|..+|+++..- ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344555666777655443 3445677777899999999999999999999887311 00
Q ss_pred --hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHH
Q 023081 85 --KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQ 161 (287)
Q Consensus 85 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~ 161 (287)
......++..+..++.+.+.++-+++..+.|++..+.. +++ ....|.++-..+..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~----------------------~~~~~~~l~~~iFk~~L~ 950 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD----------------------DEDLSIAITHETLKTACA 950 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC----------------------CHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC----------------------ChhhHHHHHHHHHHHHHh
Confidence 00112456677778888888888888888887653310 000 12367778888899
Q ss_pred cCCHHHHHHHHHHH
Q 023081 162 KGNYTSAEVVYRKA 175 (287)
Q Consensus 162 ~g~~~~A~~~~~~a 175 (287)
.|+|++|...+-..
T Consensus 951 l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 951 AGKFDAAHVALMVL 964 (1139)
T ss_dssp HCCSGGGGHHHHHH
T ss_pred hCCHHHHHHHHHhC
Confidence 99999998777543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.17 Score=43.03 Aligned_cols=131 Identities=13% Similarity=0.100 Sum_probs=59.6
Q ss_pred HhhCCHHHHHHHHHHHHh------c-----CCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHHh-----c
Q 023081 30 LVEKDPEAAIVLFWKAIN------A-----GDRVDSALKDMAVVLKQQDRVDEAVE----------AIKSFRHL-----C 83 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~------~-----~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~~~~~-----~ 83 (287)
+..+++++|..+-...+. . ++-.+.+|+.++.++...|+...... .+..+++. +
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 456788888887765541 1 12235567777777777776654322 22222221 2
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
+ .....+++.+...|...+.|+.|..+..++. .|... ..++.....++.+|.++.-++
T Consensus 227 ~-~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-------------------~sn~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 227 N-ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-------------------VSSSLEARYFFYLSKINAIQL 284 (523)
T ss_dssp S-CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-------------------SCHHHHHHHHHHHHHHHHHTT
T ss_pred c-chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-------------------CCHHHHHHHHHHHHHHHHHhc
Confidence 2 1233678889999999999999999998874 33200 001112556788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCc
Q 023081 164 NYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~ 182 (287)
+|.+|.+++..|+...|.+
T Consensus 285 ~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCS
T ss_pred cHHHHHHHHHHHHHhCCcc
Confidence 9999999999999887754
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.89 Score=38.74 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHcCCHHHHHHHHHHHHH--h-ch------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 62 VLKQQDRVDEAVEAIKSFRH--L-CS------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 62 ~~~~~g~~~~A~~~~~~~~~--~-~p------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.+...+++++|..+-...+. . .. +.....+|+.++.++...|+.............+.+.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~----------- 213 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST----------- 213 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTH-----------
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH-----------
Confidence 34567788888887765541 1 11 1111244555555666666655544333333332221
Q ss_pred HHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchH-H-H--HHHHHHHhccCHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP--DANK-A-C--NLSHCLIKQARYTEARSVL 205 (287)
Q Consensus 133 a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~-~-~--~l~~~~~~~g~~~~A~~~~ 205 (287)
-...++...+..+++ ...+++.+-..|...+.+++|..+..++.-... .+.. . + .+|.++.-+++|.+|..++
T Consensus 214 Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 214 MMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 011111112333333 366788888999999999999999999852111 1222 1 2 7899999999999999999
Q ss_pred HHHHhcccCCCC
Q 023081 206 EDVLLGKLSGST 217 (287)
Q Consensus 206 ~~~l~~~~~~~~ 217 (287)
..|+...+.+..
T Consensus 294 ~~A~rkap~~~~ 305 (523)
T 4b4t_S 294 IAAIRKAPHNSK 305 (523)
T ss_dssp HHHTSSCSCSSS
T ss_pred HHHHHhCCcchh
Confidence 999987544433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.58 E-value=3.3 Score=33.13 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhcCCC---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----hhhhHHHHHHHHHHHHHHcC
Q 023081 33 KDPEAAIVLFWKAINAGDR---V--DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC----SKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 33 ~~~~~A~~~~~~al~~~~~---~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~~~l~~~~~~~g 103 (287)
+..++-+.-++..++...- . -+.+..++.=|...+++++|++.+......- ....-..+...+.++|.+.+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 3445555555555554432 1 1223345566788899999999876654331 12222245666667777765
Q ss_pred C--HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 104 R--LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 104 ~--~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
- -++...-+.+.+...|............+...-.++ -...-.++..+..+|..|++.+++.+|..+|
T Consensus 90 ~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 90 QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3 234444455555555432211111112222221110 0112348999999999999999999998887
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=4.7 Score=35.46 Aligned_cols=159 Identities=12% Similarity=-0.002 Sum_probs=96.2
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDS----ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..+.......+.+.|...+........-... .+..+|.-....+...++...+.+.....+++. .....+...
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~r~A 295 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS---LIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH---HHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH---HHHHHHHHH
Confidence 3455556667888898888776543322222 222333333444535567777776554433332 222222334
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|+++.|...|..+-.... ..+...+-+|.++...|+.++|..+|+++....
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~--------------------------~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~ 349 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAK--------------------------EKDEWRYWQADLLLERGREAEAKEILHQLMQQR 349 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGG--------------------------GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHCCCHHHHHHHHHHcccccc--------------------------ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence 456999999998875433211 146667888999999999999999998876510
Q ss_pred -----------------------CCc-h-----HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 180 -----------------------PDA-N-----KACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 180 -----------------------~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.. . .....+..+...|....|...+..++..
T Consensus 350 ~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 350 GFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp SHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 000 0 0113456678889988888888877754
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=4.6 Score=35.48 Aligned_cols=53 Identities=11% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANK-ACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+.|++..|..+|..+-........ .+.+|.++..+|+.++|..+|+.+..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345679999999999876442222233 35899999999999999999999875
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.34 E-value=3.1 Score=30.55 Aligned_cols=79 Identities=9% Similarity=-0.063 Sum_probs=57.8
Q ss_pred HHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 40 VLFWKAINA---------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 40 ~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
..+++++.. +|.....|...+..+ ..+...++..+|.-+....-......+|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466666642 233456677777765 2344778888888887665433333688999999999999999999
Q ss_pred HHHHHHhcc
Q 023081 111 LLKQKLRMI 119 (287)
Q Consensus 111 ~~~~al~~~ 119 (287)
+|+.+++..
T Consensus 137 Vy~~GI~~~ 145 (202)
T 3esl_A 137 LLELGAENN 145 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999875
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.19 E-value=21 Score=33.15 Aligned_cols=205 Identities=10% Similarity=0.038 Sum_probs=102.2
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD--SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+-+.+|.++...++ +++.+.+...+..+.... .+-..+|.++.-.|+-+-....+..+.+-..+.. .....+|.
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~v--rR~aalgL 532 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI--TRGLAVGL 532 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHH--HHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 466788888887776 456777777776443222 3455677777778887666666655554333333 22233333
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc-c---------hhhhhcCCChhHHHH-HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMI-Y---------HGEAFNGKPTKTARS-HGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~-~---------~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
.+...|+.+.+-...+...... | .+.+|.|.....+.+ .+.. ......++..-.-.+|......|+.+
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~-~~~d~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV-AVSDSNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHTSSSCS
T ss_pred HhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-hccCCcHHHHHHHHHHHHhhccCCHH
Confidence 3345577766666666554422 2 122333433333333 3332 22111112222233444444556655
Q ss_pred HHHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 167 SAEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
.+...+..... ..+....+ .||.+....++ .+++..+...... .+..+...|...|..++..
T Consensus 612 ~v~rlv~~L~~-~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 612 TVPRIVQLLSK-SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SHHHHTTTGGG-CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcC
Confidence 44444433222 22221112 44544433443 6778777777642 3334444555566666543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.20 E-value=21 Score=33.30 Aligned_cols=92 Identities=11% Similarity=-0.046 Sum_probs=64.7
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-c-----------------h
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-C-----------------S 84 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-----------------p 84 (287)
..+.......|.++-|.+ .+..-|.++..-+.+|.+|...|++++|..+|+++-.- . |
T Consensus 814 ~~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 335555666777765433 44566777778899999999999999999999887321 0 0
Q ss_pred ---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 85 ---KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 85 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
+.....+|..++.++...+-++-++...+.|++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0012246677788888888888888888888765
|
| >3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.09 E-value=3.8 Score=30.23 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=24.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV 52 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 52 (287)
.-.|++|+.+..+++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345777888777788888888887777776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 287 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-05 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 8e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 8e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 1e-10
Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 11/186 (5%)
Query: 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92
+ AI F KA+ A ++ VLK+ D AV A L A +
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--VH 240
Query: 93 NVLIDLYKKCGRLDEQIELLKQKLRM--------IYHGEAFNGKPTKTARSHGKKFQVTV 144
L +Y + G +D I+ ++ + + A K + + +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARS 203
+ L NL ++GN A +YRKA + P+ A NL+ L +Q + EA
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 204 VLEDVL 209
++ +
Sbjct: 361 HYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 2e-10
Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 11/183 (6%)
Query: 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81
Y+ +V + + A+ + +A++ ++A V +Q +D A++ +
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141
L ++ N L + K+ G + E + LR+ R G +
Sbjct: 266 LQPHFP-DAYCN-LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 142 --------VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCL 192
+ V E + NL Q+G A + Y++A I P A N+ + L
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Query: 193 IKQ 195
+
Sbjct: 384 KEM 386
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 3e-05
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
L Q G++ +AE + +PD LS + R + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 8e-05
Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 29/193 (15%)
Query: 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101
+ KAI A ++ V Q + A+ + L L ++ K+
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--AYINLGNVLKE 215
Query: 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161
D + + L + + + + GNL Y +
Sbjct: 216 ARIFDRAVAAYLRALSLSPN--------------------------HAVVHGNLACVYYE 249
Query: 162 KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETK 220
+G A YR+A + P A CNL++ L ++ EA L + +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 221 TINRVKELLQELE 233
+ +K +E
Sbjct: 310 NLANIKREQGNIE 322
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 19/185 (10%), Positives = 44/185 (23%), Gaps = 31/185 (16%)
Query: 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84
+ ++ + N + ++ +Q +K CS
Sbjct: 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI---VKPQSSSCS 148
Query: 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV 144
Q L + L D+ + + + + ++
Sbjct: 149 YICQHCLVH-LGDIARYRNQTSQAESYYRHAAQL-------------------------- 181
Query: 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARS 203
+ L KG++ + Y ++ + A NL L K +
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
Query: 204 VLEDV 208
V
Sbjct: 242 TKWGV 246
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 18/178 (10%), Positives = 52/178 (29%), Gaps = 9/178 (5%)
Query: 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVE-AIKS-FRHLCSKQAQESLDNV- 94
+ +A + + A V + + + + + + + K+ ++ L N
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHA 64
Query: 95 ---LIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRI 151
I + + + + + EA +G T+ + F V
Sbjct: 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVK 122
Query: 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVL 209
LG ++ + ++ + + +L + + ++A S
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAA 179
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 14/157 (8%), Positives = 38/157 (24%), Gaps = 2/157 (1%)
Query: 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86
P + I S+ + +L Q ++ + ++ K+
Sbjct: 152 VAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211
Query: 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQ 146
+ + D + + L + + ++ K+ Q +
Sbjct: 212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271
Query: 147 --ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181
+ L A + + +DP
Sbjct: 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 26/179 (14%), Positives = 60/179 (33%), Gaps = 16/179 (8%)
Query: 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91
+KD + A+ F + R ++ + + EA +A + A
Sbjct: 18 KKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 74
Query: 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRI 151
++ Y + + D I+ LK+ L + + + K + K +
Sbjct: 75 QRGML--YYQTEKYDLAIKDLKEALIQLRGNQLIDYK----------ILGLQFKLFACEV 122
Query: 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
L N+ + Y +K + AE A + + + + + + + + E + L
Sbjct: 123 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL 181
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 8e-04
Identities = 27/229 (11%), Positives = 53/229 (23%), Gaps = 20/229 (8%)
Query: 1 MSQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMA 60
V + P A ++ AG K +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 61 VVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120
L E E + L + L L+ G D+ ++ L +
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 121 HGEAFNGKPTKTARSHGKKFQV--------TVKQETSRILGNLGWAYMQKGNYTSAEVVY 172
+ K T + + + ++ R NLG + + G + A +
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 173 RKAQLIDPDANKA------------CNLSHCLIKQARYTEARSVLEDVL 209
+A + + L L + + L
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 8e-04
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
G +Q+G+ +A +++ A DP +A L + + A S L L
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 80
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 36.5 bits (83), Expect = 0.001
Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 14/148 (9%)
Query: 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114
+K+ V + + +AV + S K+ + +
Sbjct: 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS--------EKESKASESFLLAAFL 68
Query: 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174
L M Y K + + + L G A + + SA+ + K
Sbjct: 69 NLAMCYLKLREYTKAV-----ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123
Query: 175 AQLIDPDANKA-CNLSHCLIKQARYTEA 201
++P A + C K + E
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKEHNER 151
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.62 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.61 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.56 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.55 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.54 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.54 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.46 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.41 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.38 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.3 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.27 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.56 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.04 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.94 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 87.05 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.9 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 85.89 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 82.52 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-24 Score=175.57 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=142.3
Q ss_pred hhhHhhcCC-CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 8 PYHVVHKLP-PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 8 ~~~~l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+...+.+| .+....+..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++++|++
T Consensus 7 ~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 86 (323)
T d1fcha_ 7 GYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 86 (323)
T ss_dssp CCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence 344444555 2556678999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc---------------CC---------ChhHHHHHHHHHhh
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------------GK---------PTKTARSHGKKFQV 142 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------~~---------~~~~a~~~~~~~~~ 142 (287)
. ..+..+|.+|...|++++|++.+++++...|...... .. ....+...+.+ ++
T Consensus 87 ~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-al 163 (323)
T d1fcha_ 87 Q--TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA-AV 163 (323)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred c--cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH-HH
Confidence 7 7889999999999999999999999998776321110 00 01122222222 33
Q ss_pred hcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 143 TVKQE--TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 143 ~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..+|+ ++.++..+|.++...|++++|+..|++++..+|+++..+ .+|.++..+|++++|+..|+++++.
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 44443 344555555555556666666666666555555555554 5555555566666666666555554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.7e-23 Score=171.78 Aligned_cols=219 Identities=21% Similarity=0.204 Sum_probs=194.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
...+...|+.+.++..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++....|...
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 237 (388)
T d1w3ba_ 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA- 237 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-
T ss_pred HHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH-
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
..+..+|.++...|++++|+..|++++++.|.. ..+ .......+...++. +....|.++.++..+|.++
T Consensus 238 -~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 -VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT-ALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh-hhccCCccchhhhHHHHHH
Confidence 678889999999999999999999999998842 222 23356777777776 6888999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
...|++++|+..|+++++.+|+++.++ ++|.++..+|++++|+..|+++++. ++++...+......+..++
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999998876 8999999999999999999999997 5566666666666666554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.5e-22 Score=166.06 Aligned_cols=187 Identities=18% Similarity=0.152 Sum_probs=172.1
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+++..+|++..++..+|.++...|++++|+..|++++...|.....+..+|.++...|++++|+..|+++++.+|+++
T Consensus 192 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 271 (388)
T d1w3ba_ 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
.++..+|.++...|++++|+..++.++...|.. ..+ ....++.|...+++ ++..+|+++.+++.+|.+
T Consensus 272 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 272 --DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK-ALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp --HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH-HTTSCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHH
Confidence 789999999999999999999999999988732 223 24467888888888 799999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
+...|++++|+.+|+++++++|+++.++ +||.+|.++|+
T Consensus 349 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998886 99999999886
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3e-22 Score=160.75 Aligned_cols=196 Identities=12% Similarity=0.009 Sum_probs=140.6
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhhHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
|...|+..+++.++|.++...+.+++|+..++++|+++|.+..+|..+|.++...| ++++|+..++++++.+|++. .
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~--~ 113 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--Q 113 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--H
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh--h
Confidence 44567778889999999999999999999999999999999999999999999987 59999999999999999988 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-h-------h-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-A-------F-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
++..+|.++...|++++|+..++++++++|... + + ....+..+...+++ ++..+|.+..+|+++|.++..
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~-al~~~p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ-LLKEDVRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999887411 1 1 11123344444444 455555555555555555554
Q ss_pred cCC------HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 162 KGN------YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 ~g~------~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+. +++|+..+.+++..+|++..+| +++.++...| ..++...++.+++.
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 443 3455555555555555555444 4444433322 34555555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=7.9e-21 Score=152.89 Aligned_cols=206 Identities=16% Similarity=0.105 Sum_probs=176.8
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+-++++.+|+++.+++.+|.++...|++++|+..|.++++.+|++...+..+|.++...|++++|+..+++++...|..
T Consensus 41 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 120 (323)
T d1fcha_ 41 LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 120 (323)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccch
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred hHHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhccchh----------hhh-cCCChhHHHHHHHHHhh
Q 023081 87 AQES-------------LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG----------EAF-NGKPTKTARSHGKKFQV 142 (287)
Q Consensus 87 ~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~-~~~~~~~a~~~~~~~~~ 142 (287)
.... ........+...+.+.+|+..|.++++.+|.. ..+ ....++.|...+++ ++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al 199 (323)
T d1fcha_ 121 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-AL 199 (323)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred HHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccc-cc
Confidence 2100 01112223455678899999999999987731 222 24467888888887 78
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++ ++|.++..+|++++|+..|+++++..+
T Consensus 200 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999998886 899999999999999999999999764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.4e-21 Score=152.91 Aligned_cols=201 Identities=7% Similarity=0.011 Sum_probs=164.3
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEK-DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
+-+-++|+.+|++..+|+.+|.++...| ++++|+..+++++..+|++..+|..+|.++...|++++|+..+.++++.+|
T Consensus 64 ~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp 143 (315)
T d2h6fa1 64 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 143 (315)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhh
Confidence 3345689999999999999999988866 699999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-hhc---------CCC-----hhHHHHHHHHHhhhcCCCcH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-AFN---------GKP-----TKTARSHGKKFQVTVKQETS 149 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~---------~~~-----~~~a~~~~~~~~~~~~~~~~ 149 (287)
++. .++..+|.++...|++++|+..|+++++++|... +|+ +.. ...+...+.+ ++..+|++.
T Consensus 144 ~n~--~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~-al~~~P~~~ 220 (315)
T d2h6fa1 144 KNY--HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE-MIKLVPHNE 220 (315)
T ss_dssp TCH--HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH-HHHHSTTCH
T ss_pred cch--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHH-HHHhCCCch
Confidence 988 8999999999999999999999999999998422 221 111 3456666666 799999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH---HHHHHHHhc--cCHHHHHHHHHHHHh
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC---NLSHCLIKQ--ARYTEARSVLEDVLL 210 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~l~~~~~~~--g~~~~A~~~~~~~l~ 210 (287)
.+|+.+|.++... ..+++...++.++.+.|+....+ .++.++... +..+.+...+.++++
T Consensus 221 ~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 221 SAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999986554 47899999999999988864332 566655332 444455555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.2e-20 Score=143.38 Aligned_cols=192 Identities=11% Similarity=-0.045 Sum_probs=143.4
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
..+.+++.+|.++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|++++..+|+++ .++..+|
T Consensus 35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg 112 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh--hhHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999988 7899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhh---c-----CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH----HcCC
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAF---N-----GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM----QKGN 164 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~----~~g~ 164 (287)
.+|...|++++|+..|+++++..|..... . ..........+........+.... + .+...+. ..+.
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-W-NIVEFYLGNISEQTL 190 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-H-HHHHHHTTSSCHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh-h-hHHHHHHHHHHHHHH
Confidence 99999999999999999999998842211 1 011111222222212222222221 1 1222221 1223
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+..+...+.......|.....+ ++|.++..+|++++|+..|+++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 4444455555555555555555 89999999999999999999999874
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.2e-18 Score=134.00 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=138.0
Q ss_pred ccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
.+.+.+++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+|
T Consensus 57 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 136 (259)
T d1xnfa_ 57 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 136 (259)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh------hhcCCCh-----hHHHHHHHHHhhhcCCCcHHHHH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------AFNGKPT-----KTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
++. .....++..+...+..+.+...........+... .+.+... ..+...... .....|....+++
T Consensus 137 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 213 (259)
T d1xnfa_ 137 NDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD-NTSLAEHLSETNF 213 (259)
T ss_dssp TCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS-HHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCcccHHHHH
Confidence 876 3444555566666766666555555554443211 1122211 111111111 3445566788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.+|.+|...|++++|+.+|++++..+|++...+
T Consensus 214 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 214 YLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999875444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=9.4e-17 Score=118.88 Aligned_cols=147 Identities=17% Similarity=0.112 Sum_probs=119.7
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.++..|..+...|+++.|++.|.+ ..|.++.+++++|.+|..+|++++|+..|+++++++|+++ .++..+|.+|.
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~--~a~~~~g~~~~ 81 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh--hhHHHHHHHHH
Confidence 356789999999999999999976 3566789999999999999999999999999999999988 89999999999
Q ss_pred HcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 101 KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
.+|++++|+..|++++...+......- ....+........+++++|.++...|++++|++.+.+++.+.|
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~----------~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHH----------HHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999986542110000 0001111222357788999999999999999999999998888
Q ss_pred Cc
Q 023081 181 DA 182 (287)
Q Consensus 181 ~~ 182 (287)
+.
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=4e-19 Score=143.68 Aligned_cols=200 Identities=7% Similarity=-0.146 Sum_probs=169.3
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhC--CHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEK--DPEAAIVLFWKAINAGDRVDSAL-KDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.++..+|++..+++.+|.++...+ ++++|+..+++++..+|....++ ..+|.++...|.+++|+..+++++..+|.+
T Consensus 98 ~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~ 177 (334)
T d1dcea1 98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred HHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 478889999999999998887765 58999999999999999988876 467788889999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-----cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-----NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
. .++..+|.++...|++++|+..+++++...|..... .......+...+.+ .+..+|.....+..+|.++..
T Consensus 178 ~--~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~-~l~~~~~~~~~~~~l~~~~~~ 254 (334)
T d1dcea1 178 Y--SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR-WLLGRAEPLFRCELSVEKSTV 254 (334)
T ss_dssp H--HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH-HHHSCCCCSSSCCCCHHHHHH
T ss_pred H--HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHH-HHHhCcchhhHHHHHHHHHHH
Confidence 7 789999999999999999988888887777642221 11122233444444 677888888888999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.|++.+|+..+.+++..+|++..++ .+|.++..+|++++|+.+|+++++..
T Consensus 255 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 255 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999988776 89999999999999999999999984
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1e-16 Score=108.83 Aligned_cols=102 Identities=12% Similarity=0.043 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHH
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSH 136 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 136 (287)
...|..+...|++++|+..|.+++..+|+++ .++..+|.+|...|++++|+..+.++++++|.
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------------- 69 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--------------- 69 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcch--hhhhcccccccccccccccchhhhhHHHhccc---------------
Confidence 3445555555555555555555555555544 44555555555555555555555554444332
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 137 GKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++.+|+++|.++..+|++++|+..|+++++.+|+++.++
T Consensus 70 -----------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 108 (117)
T d1elwa_ 70 -----------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 108 (117)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred -----------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 455555555555555555555555555555555554443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=8.3e-17 Score=109.30 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=94.2
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
-+...|..++..|++++|+..|.++++.+|+++.++..+|.+|...|++++|+..+.+++.++|+++ ..+..+|.++.
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~g~~~~ 82 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchh--hHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999988 78999999999
Q ss_pred HcCCHHHHHHHHHHHHhccch
Q 023081 101 KCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~ 121 (287)
..|++++|+..|+++++.+|.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT
T ss_pred HccCHHHHHHHHHHHHHhCCC
Confidence 999999999999999888775
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.9e-16 Score=112.71 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=94.7
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..+...|..++..|+|++|+..|+++++.+|+++.+|.++|.++...|++++|+..|+++++++|++. .++..+|.++
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~--~a~~~~g~~~ 88 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch--HHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999988 7899999999
Q ss_pred HHcCCHHHHHHHHHHHHhccch
Q 023081 100 KKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~ 121 (287)
...|++++|+..|++++.+.|.
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999888764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=5.6e-16 Score=111.23 Aligned_cols=122 Identities=14% Similarity=0.075 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..+...|..++..|++++|+..|+++++++|+++ .++..+|.+|...|++++|+..|+++++++|.
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~------------ 76 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKK------------ 76 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh--hhhhhhHHHHHhccccchHHHHHHHHHHHccc------------
Confidence 4466789999999999999999999999999988 89999999999999999999999998888764
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHH--hccCHHHHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLI--KQARYTEARS 203 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~--~~g~~~~A~~ 203 (287)
++.+|..+|.++...|++++|+..|++++.++|+++.+. .++.+.. ..+.+++|+.
T Consensus 77 --------------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 77 --------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999998775 5665543 3334445543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=1.4e-15 Score=120.17 Aligned_cols=174 Identities=12% Similarity=0.076 Sum_probs=142.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQ 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~ 88 (287)
.+.|...|.+|...+++++|++.|.+++... +....++.++|.+|...|++++|+..+++++.+.+.. ..
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 4568899999999999999999999999863 2235678999999999999999999999999987643 12
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 89 ESLDNVLIDLYKK-CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 89 ~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
...+..+|.+|.. .|++++|+..|++++++.+. ....+....++.++|.++...|+|++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~--------------------~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ--------------------DQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh--------------------cCchhhhhhHHHHHHHHHHHcChHHH
Confidence 3567788888865 59999999999999987552 11112235678899999999999999
Q ss_pred HHHHHHHHHhhCCCchH-------H-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDANK-------A-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~-------~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+..|++++...+..+. . ..++.++...|++..|...++++++..
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999998777542 2 267888999999999999999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.3e-14 Score=107.20 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARS 135 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~ 135 (287)
+++.|..+...|++++|++.|.++ .|.++ .+++.+|.+|...|++++|++.|+++++++|.
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~--~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-------------- 68 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAV---QDPHS--RICFNIGCMYTILKNMTEAEKAFTRSINRDKH-------------- 68 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS---SSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhc---CCCCH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh--------------
Confidence 446799999999999999999864 44445 67889999999999999999999998888764
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----------------HH-HHHHHHHHhccCH
Q 023081 136 HGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN----------------KA-CNLSHCLIKQARY 198 (287)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~-~~l~~~~~~~g~~ 198 (287)
++.+|+++|.++..+|++++|+..|++++...+.+. .. +++|.++..+|++
T Consensus 69 ------------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~ 136 (192)
T d1hh8a_ 69 ------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136 (192)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred ------------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence 899999999999999999999999999998655431 22 3899999999999
Q ss_pred HHHHHHHHHHHhcc
Q 023081 199 TEARSVLEDVLLGK 212 (287)
Q Consensus 199 ~~A~~~~~~~l~~~ 212 (287)
++|.+.+..++...
T Consensus 137 ~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 137 KKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=5e-16 Score=115.81 Aligned_cols=101 Identities=13% Similarity=0.085 Sum_probs=70.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
++..+...|..++..|+|++|+..|++++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++ ..+..+|.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~--~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH--HHHHHHHH
Confidence 3455566677777777777777777777777777777777777777777777777777777777777665 56666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhccc
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
+|...|++++|+..|++++++.|
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc
Confidence 77777777777777777666655
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=5.2e-16 Score=115.72 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=72.7
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+-++|..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+..|++++.+.|+..
T Consensus 27 ~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 27 YGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999988754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.64 E-value=1.3e-15 Score=102.46 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=91.2
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
...+.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++. .++..+|.+|
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~la~~y 94 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSH 94 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc--cchHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999988 8999999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 023081 100 KKCGRLDEQIELLKQKL 116 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al 116 (287)
...|++++|++.+++.+
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=6.6e-15 Score=118.51 Aligned_cols=176 Identities=7% Similarity=-0.031 Sum_probs=139.9
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHh----------hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLV----------EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR--VDEAVEA 75 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~ 75 (287)
.-+++..+|++.++|...+.+... .|++.+|+.+++++++.+|++..++..+|.++...++ +++|+..
T Consensus 52 ~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~ 131 (334)
T d1dcea1 52 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 131 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHH
Confidence 345888999999998777766544 4458999999999999999999999999999988775 8999999
Q ss_pred HHHHHHhchhhhHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 76 IKSFRHLCSKQAQESL-DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 76 ~~~~~~~~p~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
++++++.+|++. .. ....|.++...+.+++|+..++++++.+|. +..+|+.
T Consensus 132 ~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~--------------------------~~~a~~~ 183 (334)
T d1dcea1 132 CARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------------------------NYSSWHY 183 (334)
T ss_dssp HHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--------------------------CHHHHHH
T ss_pred HHHHHhhCchhh--hhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC--------------------------CHHHHHH
Confidence 999999999875 34 456788888999999999999998888774 3344444
Q ss_pred HHHHHH------------------------------HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHH
Q 023081 155 LGWAYM------------------------------QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARS 203 (287)
Q Consensus 155 lg~~~~------------------------------~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~ 203 (287)
+|.++. ..+..++|...+.+++...|.....+ .+|.++...|++.+|+.
T Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 444444 44555667777777777777776665 78888888899999999
Q ss_pred HHHHHHhc
Q 023081 204 VLEDVLLG 211 (287)
Q Consensus 204 ~~~~~l~~ 211 (287)
.+.+++..
T Consensus 264 ~~~~~~~~ 271 (334)
T d1dcea1 264 ELQELEPE 271 (334)
T ss_dssp HHHHHCTT
T ss_pred HHHHHHhh
Confidence 99888876
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.8e-14 Score=101.97 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++..+|.+|.+.|++++|+..+++++.++|. ++.+++.+|.++..+|++++|+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~--------------------------~~~a~~~~g~~~~~~g~~~~A~ 116 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN--------------------------NEKGLSRRGEAHLAVNDFELAR 116 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc--------------------------chhhhHHHHHHHHHhhhHHHHH
Confidence 45677899999999999999999998877664 8899999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHH
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A 201 (287)
..|+++++++|+++.+. .++.+....++..+.
T Consensus 117 ~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 117 ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776 788887666655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2e-14 Score=98.87 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=59.0
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-----HHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-----QESLDNVLI 96 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~~~l~ 96 (287)
+-.+|..++..|+|++|+.+|++++..+|+++.++.++|.+|...|++++|+..+++++.++|++. ...++..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677777777777777777777777777777777777777777777777777777777766543 112333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 023081 97 DLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.++...+++++|+.+|++++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 4444444444444444444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4.4e-16 Score=132.08 Aligned_cols=215 Identities=9% Similarity=-0.009 Sum_probs=141.7
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch--h
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS--K 85 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~ 85 (287)
+.+++...|+.+++++.+|.++..++++++| |++++..+|+....+...+.+. + ..+..+++.+++..+... +
T Consensus 9 ~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~-~~y~~~ie~~r~~~k~~~~~~ 83 (497)
T d1ya0a1 9 LRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW-N-HAFKNQITTLQGQAKNRANPN 83 (497)
T ss_dssp HHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-H-HHTHHHHHHHHHHHSCSSCTT
T ss_pred HHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH-H-HHHHHHHHHHHHhcccccCcc
Confidence 3458889999999999999999999999876 8899999987755543333222 1 124566777777665432 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-hh--cCC------ChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-AF--NGK------PTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~--~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
... ......+.++...+.|+.|+..+.+++.+.|... .+ .|. ....+....+. ++..+ ...++.++|
T Consensus 84 ~~~-~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~--~~~~~~~LG 159 (497)
T d1ya0a1 84 RSE-VQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS-SCSYI--CQHCLVHLG 159 (497)
T ss_dssp TTH-HHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCH-HHHHH--HHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHH-HhCCC--HHHHHHHHH
Confidence 111 1233345566667888888888888887766321 11 111 12222222222 22222 346788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
.++...|++++|+.+|++++.++|++...+ +||.++...|++.+|+.+|.+++.. .+++..........+.....
T Consensus 160 ~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~---~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV---KFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS---SBCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998887 8999999999999999999999987 44555555555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.3e-14 Score=102.22 Aligned_cols=123 Identities=10% Similarity=-0.014 Sum_probs=106.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---------------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+..+...|..++..|++++|+..|++++...|.. ..++.++|.+|...|++++|+..+++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 3456678999999999999999999999887643 3557789999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
|+++ .++..+|.+|...|++++|+..|+++++++|. ++.+...++.+....+
T Consensus 93 p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~--------------------------n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 93 SNNE--KGLSRRGEAHLAVNDFELARADFQKVLQLYPN--------------------------NKAAKTQLAVCQQRIR 144 (170)
T ss_dssp TTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--------------------------CHHHHHHHHHHHHHHH
T ss_pred ccch--hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHHH
Confidence 9988 89999999999999999999999998888764 7778888888877666
Q ss_pred CHHHHH
Q 023081 164 NYTSAE 169 (287)
Q Consensus 164 ~~~~A~ 169 (287)
...+..
T Consensus 145 ~~~~~e 150 (170)
T d1p5qa1 145 RQLARE 150 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=2.7e-14 Score=112.57 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=132.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhh----
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQ-QDRVDEAVEAIKSFRHLCSKQ---- 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~---- 86 (287)
....+..+|.+|...|++++|+..|++++...+.. ..++..+|.++.. .|++++|+.+|++++++.+..
T Consensus 76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~ 155 (290)
T d1qqea_ 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 45678999999999999999999999999875443 5678889988865 699999999999999886532
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
....++..+|.++...|+|++|+..|++++...+... .........+...|.++...|++.
T Consensus 156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~d~~ 216 (290)
T d1qqea_ 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-------------------LSQWSLKDYFLKKGLCQLAATDAV 216 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-------------------TTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch-------------------hhhhhHHHHHHHHHHHHHHhccHH
Confidence 1235688899999999999999999999998866311 111113456778899999999999
Q ss_pred HHHHHHHHHHhhCCCchHHH------HHHHHHHh--ccCHHHHHHHHHHHHhc
Q 023081 167 SAEVVYRKAQLIDPDANKAC------NLSHCLIK--QARYTEARSVLEDVLLG 211 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~------~l~~~~~~--~g~~~~A~~~~~~~l~~ 211 (287)
.|...+++++..+|...... .+..++.. .+.+++|+..|.++.+.
T Consensus 217 ~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 99999999999998764331 45555544 45688998888766654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=1.7e-14 Score=96.75 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
...+.+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|+++++++|.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------ 82 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIALNHARMLDPK------------ 82 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccc--hhhhhhhhhhhhhhhHHHhhcccccccccccc------------
Confidence 3467899999999999999999999999999988 89999999999999999999999998888764
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
++.+|..+|.+|...|++++|++.+++.+
T Consensus 83 --------------~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 83 --------------DIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999876
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.57 E-value=1.2e-13 Score=99.77 Aligned_cols=116 Identities=13% Similarity=0.054 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----------------hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRH----------------LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~----------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..|..+...|++.+|+..|.+++. ..|... .++..+|.+|.+.|++++|+..++++++++|.
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL--SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhH--HHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 344444444555555555544443 334444 56788899999999999999999998877664
Q ss_pred hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH
Q 023081 122 GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE 200 (287)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~ 200 (287)
++.+|+.+|.+|...|++++|+..|+++++++|++..+. .++.+........+
T Consensus 110 --------------------------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 110 --------------------------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999987775 67777766555544
Q ss_pred H
Q 023081 201 A 201 (287)
Q Consensus 201 A 201 (287)
+
T Consensus 164 ~ 164 (169)
T d1ihga1 164 K 164 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=3.2e-13 Score=108.45 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=47.3
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh------hH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ------AQ 88 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~ 88 (287)
++..+|.++...|++++|+..|++++...+.. ..++..++.++...|++..|...+.+++...+.. ..
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 34445555555555555555555554432111 2334444555555555555555555554433211 01
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
......+|.++...|+++.+...+.+++..
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 162 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEV 162 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 123444556666666666666666665554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.55 E-value=3.3e-13 Score=97.32 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK-------------QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+...|..++..|++.+|+..|.+++...|. .....++..+|.+|...|++++|+..+++++.++|.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~ 96 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 96 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence 3445555555555555555555555543221 112246777899999999999999999998877664
Q ss_pred hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH
Q 023081 122 GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE 200 (287)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~ 200 (287)
++.+++.+|.++...|++++|+..|++++.++|++..+. .++.+....+...+
T Consensus 97 --------------------------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 97 --------------------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 889999999999999999999999999999999998776 67777766665443
Q ss_pred -HHHHHHHHH
Q 023081 201 -ARSVLEDVL 209 (287)
Q Consensus 201 -A~~~~~~~l 209 (287)
....|.+..
T Consensus 151 ~~kk~~~~~f 160 (168)
T d1kt1a1 151 RDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 344444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.6e-14 Score=96.32 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=86.7
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD---RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.++..+...+++++|.+.|++++..+|.++.+++++|.++...+ ++++|+..|++++..+|.+....+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999998755 456799999999998876543368899999999
Q ss_pred HcCCHHHHHHHHHHHHhccch
Q 023081 101 KCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~ 121 (287)
..|++++|+.+|+++++++|.
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhhHHHHHHHHHHHHhCcC
Confidence 999999999999999988875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.55 E-value=1.3e-13 Score=97.84 Aligned_cols=80 Identities=23% Similarity=0.217 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++..+|.+|.++|++++|+..++++++++|. ++.+|+.+|.++..+|++++|+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~--------------------------~~ka~~~~g~~~~~lg~~~~A~ 121 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN--------------------------NVKALYKLGVANMYFGFLEEAK 121 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch--------------------------hhhhhHHhHHHHHHcCCHHHHH
Confidence 35667888888999999999988887777654 7888899999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQ 195 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~ 195 (287)
..|++++.++|++..+. .++.+..++
T Consensus 122 ~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 122 ENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999887775 566665544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.54 E-value=2.4e-13 Score=98.10 Aligned_cols=130 Identities=9% Similarity=-0.047 Sum_probs=108.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR---------------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
...+...|..++..|+|.+|+..|.+++...|. ...++.++|.||...|++++|+..+++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 456778999999999999999999999975433 13457789999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
|++. ..+..+|.+|...|++++|+..|+++++++|. ++.++..++.+....+
T Consensus 95 p~~~--~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~--------------------------n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 95 SANE--KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--------------------------NKAARLQIFMCQKKAK 146 (168)
T ss_dssp TTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--------------------------CHHHHHHHHHHHHHHH
T ss_pred cchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHHH
Confidence 9988 78999999999999999999999998888764 7778888888877766
Q ss_pred CHHH-HHHHHHHHH
Q 023081 164 NYTS-AEVVYRKAQ 176 (287)
Q Consensus 164 ~~~~-A~~~~~~al 176 (287)
.+.+ ....|.+.+
T Consensus 147 ~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 147 EHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 5543 334444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=1.5e-12 Score=103.24 Aligned_cols=201 Identities=5% Similarity=-0.063 Sum_probs=147.8
Q ss_pred hHhhcCCCCchHHHHhHHhHHh--------------hCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLV--------------EKDPEAAIVLFWKAINA-GDRVDSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~--------------~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 74 (287)
+++...|.++..|+.-+..... .+..++|...|++++.. .|.....|..++..+...|++++|..
T Consensus 41 rAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~ 120 (308)
T d2onda1 41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHH
Confidence 5778889999999887765543 33458899999999975 68888899999999999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh---------h-cCCChhHHHHHHHHHhhhc
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA---------F-NGKPTKTARSHGKKFQVTV 144 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~-~~~~~~~a~~~~~~~~~~~ 144 (287)
.|++++...|.+.. .++...+.+....|++++|.+.|.++++..|.... + .......+...++. ++..
T Consensus 121 i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~-~l~~ 198 (308)
T d2onda1 121 IYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL-GLKK 198 (308)
T ss_dssp HHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHH-HHHh
Confidence 99999999886531 46788888999999999999999999998874211 0 12344555555555 5666
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN----KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 145 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.|.++..|...+..+...|+++.|...|++++...|.++ ..| .........|+.+.+..+++++.+..
T Consensus 199 ~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 677777777777777777777777777777776555432 233 34444556677777777777666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.53 E-value=1.7e-13 Score=97.21 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=89.8
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----------------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
..+...|..++..|+|.+|+..|++++...+.. ...+.++|.+|..+|++++|+..+++++.++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~ 97 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence 456678999999999999999999999866432 2467789999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|.+. .+++.+|.+|...|++++|+..|+++++++|.
T Consensus 98 p~~~--ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 98 KNNV--KALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp TTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred chhh--hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9988 89999999999999999999999999888775
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.1e-14 Score=96.05 Aligned_cols=111 Identities=14% Similarity=-0.009 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG---RLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..++..+...+++++|.+.|++++..+|+++ .+.+.+|.++...+ ++++|+..|++++..+|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~--~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~------------ 68 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK------------ 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC------------
Confidence 3577788889999999999999999999988 78889999987644 556799999998887653
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLI 193 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~ 193 (287)
|..+.+++++|.+|...|++++|+.+|+++++++|++..+. .++.+..
T Consensus 69 ------------~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 69 ------------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 11356899999999999999999999999999999998776 4444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=9.9e-15 Score=102.63 Aligned_cols=117 Identities=15% Similarity=0.027 Sum_probs=74.5
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHH
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDE 107 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 107 (287)
.+...+.+++|+..|+++++.+|+++.++.++|.++...+++..+.+. .+.+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~--------------------------~~~~~~ 59 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA--------------------------KQMIQE 59 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH--------------------------HHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH--------------------------HHHHHH
Confidence 345566688888888888888888888888888888765443322210 122334
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-----------NYTSAEVVYRKAQ 176 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al 176 (287)
|+..|+++++++| +++.+|+++|.+|...| .+++|..+|++++
T Consensus 60 Ai~~~~kAl~l~P--------------------------~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal 113 (145)
T d1zu2a1 60 AITKFEEALLIDP--------------------------KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 113 (145)
T ss_dssp HHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--------------------------hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc
Confidence 4444444443333 25555555555555443 3688999999999
Q ss_pred hhCCCchHHH-HHHHHHHhcc
Q 023081 177 LIDPDANKAC-NLSHCLIKQA 196 (287)
Q Consensus 177 ~~~~~~~~~~-~l~~~~~~~g 196 (287)
.++|++..++ .|+.+....+
T Consensus 114 ~l~P~~~~~~~~L~~~~ka~~ 134 (145)
T d1zu2a1 114 DEQPDNTHYLKSLEMTAKAPQ 134 (145)
T ss_dssp HHCTTCHHHHHHHHHHHTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHH
Confidence 9999887776 6776654333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.52 E-value=9.7e-14 Score=100.33 Aligned_cols=121 Identities=10% Similarity=-0.012 Sum_probs=103.4
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINA----------------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
..+...|..+...|++.+|+..|++++.. +|....++.++|.++...|++++|+..+.++++++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 107 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 107 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence 34567789999999999999999999853 24456778899999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
|+++ .++..+|.+|...|++++|+..|+++++++|. +..+...++.+.....
T Consensus 108 p~~~--~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~--------------------------n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 108 PSNT--KALYRRAQGWQGLKEYDQALADLKKAQEIAPE--------------------------DKAIQAELLKVKQKIK 159 (169)
T ss_dssp TTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHH
T ss_pred hhhh--hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHHH
Confidence 9988 88999999999999999999999999888764 6777777777776655
Q ss_pred CHHHH
Q 023081 164 NYTSA 168 (287)
Q Consensus 164 ~~~~A 168 (287)
...++
T Consensus 160 ~~~~~ 164 (169)
T d1ihga1 160 AQKDK 164 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.9e-12 Score=103.76 Aligned_cols=179 Identities=12% Similarity=0.019 Sum_probs=145.3
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----h
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----A 87 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~ 87 (287)
..++.....|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++...+.. .
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 345677778999999999999999999999999876 3578889999999999999999999999886643 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
.......++.++...|++..|...+.+++...+.. .....+....++..+|.++...|+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~la~~~~~~~~~~~ 151 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ------------------HLEQLPMHEFLVRIRAQLLWAWARLDE 151 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------------TCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc------------------ccchhhHHHHHHHHHHHHHHHhcchhh
Confidence 22457788999999999999999999998875420 011112235567789999999999999
Q ss_pred HHHHHHHHHhhCCCchH-----H-HHHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 168 AEVVYRKAQLIDPDANK-----A-CNLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~-----~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
|...+.+++...+.... . ..++.++...+++.++...+.++.....
T Consensus 152 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 203 (366)
T d1hz4a_ 152 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 203 (366)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999987665421 1 2688889999999999999999887653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.3e-13 Score=91.62 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..+..+|..++..|+|++|+.+|.++++++|+++ .++..+|.+|...|++++|+..++++++++|..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~----------- 71 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----------- 71 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-----------
Confidence 3466788999999999999999999999999877 788888999999999999999999988887631
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
....+.-..++..+|.++...+++++|+.+|++++..+++..
T Consensus 72 --------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 113 (128)
T d1elra_ 72 --------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113 (128)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence 001111245677888888888888888888888888776543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.46 E-value=1.8e-11 Score=94.64 Aligned_cols=200 Identities=18% Similarity=0.144 Sum_probs=139.2
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
+|.+++.+|..+...+|+++|+++|+++.+. +++.+++.||.+|.. ..++..|..+++.+...... ....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~----~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS----NGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc----chhh
Confidence 5689999999999999999999999999875 467899999999987 67899999999998776533 3444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhccchh------hhh-cCC----ChhHHHH-----------------------
Q 023081 94 VLIDLYKK----CGRLDEQIELLKQKLRMIYHG------EAF-NGK----PTKTARS----------------------- 135 (287)
Q Consensus 94 ~l~~~~~~----~g~~~~A~~~~~~al~~~~~~------~~~-~~~----~~~~a~~----------------------- 135 (287)
.++.++.. .++.+.|...++.+....+.. ..+ .+. ....+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 55665554 467888999999888764411 111 111 1111111
Q ss_pred ----------HHHHHhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHh----cc
Q 023081 136 ----------HGKKFQVTVKQETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIK----QA 196 (287)
Q Consensus 136 ----------~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----~g 196 (287)
....+.....+.++.+++++|.+|.. ..++++|+.+|+++.+. +++.+ ++||.+|.. ..
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSC
T ss_pred CCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCcc
Confidence 11111223345578888888888877 56888899999888776 34455 488888875 34
Q ss_pred CHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 197 RYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 197 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
++.+|..+|+++.+.. + ..+...|..|..
T Consensus 233 n~~~A~~~~~kAa~~g-----~----~~A~~~l~~l~~ 261 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLG-----A----KGACDILKQLKI 261 (265)
T ss_dssp CSTTHHHHHHHHHHHT-----C----HHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHCc-----C----HHHHHHHHHHHH
Confidence 7888999998888762 2 345666666553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.5e-13 Score=114.01 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=93.6
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
++.+....+.|+.|+..+++++..+|.....+.++|.++...|++++|+..+.+++..+|. ..+..+|.++...|+
T Consensus 92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~LG~l~~~~~~ 167 (497)
T d1ya0a1 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ----HCLVHLGDIARYRNQ 167 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHccc
Confidence 4555566777888888888888888888899999999999999999999999999887775 356678999999999
Q ss_pred HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Q 023081 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 105 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 184 (287)
+++|+.+|++++++.|. ++.+++.+|.++...|++.+|+.+|.+++..+|.++.
T Consensus 168 ~~~A~~~y~~A~~l~P~--------------------------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~ 221 (497)
T d1ya0a1 168 TSQAESYYRHAAQLVPS--------------------------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHHHCTT--------------------------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHHHHHHHHHHCCC--------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH
Confidence 99999999998877664 8999999999999999999999999999999999988
Q ss_pred HH-HHHHHHHhc
Q 023081 185 AC-NLSHCLIKQ 195 (287)
Q Consensus 185 ~~-~l~~~~~~~ 195 (287)
++ +|+.++.+.
T Consensus 222 a~~nL~~~~~~~ 233 (497)
T d1ya0a1 222 ASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 86 888887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.41 E-value=3.3e-12 Score=90.75 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=87.1
Q ss_pred hHHHHh--HHhHHhhCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 20 SPYVRA--KHVQLVEKDPEAAIVLFWKAINAGDRV------------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 20 ~~~~~l--g~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.++..+ |..++..|+|++|+..|++++.+.|+. ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 455554 788889999999999999999987653 357889999999999999999999999988764
Q ss_pred h---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 86 Q---------AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 86 ~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
. .+..+++.+|.+|...|++++|+..|++++++.|.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2 13346788999999999999999999999999773
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=5.9e-11 Score=93.89 Aligned_cols=176 Identities=12% Similarity=0.015 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ--------------DRVDEAVEAIKSFRHL-CSKQAQESLDNVLIDLY 99 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~~~~~-~p~~~~~~~~~~l~~~~ 99 (287)
.+.+...|++|+...|..+..|...+..+... +..++|...|+++++. .|.+. .++...+.++
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~--~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCH--HHHHHHHHHH
Confidence 45677889999999999999999888765443 3468899999999975 56655 5788889999
Q ss_pred HHcCCHHHHHHHHHHHHhccchhh--hhc--------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH-HcCCHHHH
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGE--AFN--------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM-QKGNYTSA 168 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~--~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A 168 (287)
...|++++|...|+++++..|... ++. ....+.+...+++ ++...|.+...+...|.... ..|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~-al~~~~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH-HHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHhccCHHHH
Confidence 999999999999999999887422 221 2245677777777 78889999999999888754 46899999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
...|++++...|+++..| ..+..+...|+++.|..+|++++...+
T Consensus 189 ~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999999999999998887 899999999999999999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=6e-12 Score=81.32 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
-.+.+|.++.+.|+|++|+.+|++++++.|. .....++...++.++|.++.+.|++++|+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-------------------~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~ 67 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDE-------------------GEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------------TCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-------------------hhccCccHHHHHHHHhhHHHhcCChHHHHH
Confidence 3567899999999999999999999998763 222334457889999999999999999999
Q ss_pred HHHHHHhhCCCchHHH-HHHHHHHhc
Q 023081 171 VYRKAQLIDPDANKAC-NLSHCLIKQ 195 (287)
Q Consensus 171 ~~~~al~~~~~~~~~~-~l~~~~~~~ 195 (287)
+|+++++++|+++.++ +++.+...+
T Consensus 68 ~y~~aL~l~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 68 LTKKLLELDPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 9999999999998886 787665443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.33 E-value=6.6e-12 Score=89.18 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=87.4
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHhchhhh----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 54 SALKDM--AVVLKQQDRVDEAVEAIKSFRHLCSKQA----------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 54 ~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~p~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.++..+ |..++..|+|++|+..|++++++.|+.+ ....+..+|.+|...|++++|+..+++++.+.+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 444444 7888899999999999999999887531 1246889999999999999999999999998763
Q ss_pred hhhhcCCChhHHHHHHHHHhhhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 122 GEAFNGKPTKTARSHGKKFQVTVKQE----TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
.....++ ...+++++|.+|..+|++++|+..|++++++.|..
T Consensus 88 -------------------~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 88 -------------------RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp -------------------HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred -------------------cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 1112221 34568889999999999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.9e-12 Score=81.35 Aligned_cols=79 Identities=18% Similarity=0.107 Sum_probs=68.8
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+++.++.+|.++...|++.+|+.+|++|++..|. ...++.++|.++.+.|++++|+.+++++++++|+++ .
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~--~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ--R 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH--H
Confidence 3566889999999999999999999999987543 367899999999999999999999999999999987 6
Q ss_pred HHHHHHHH
Q 023081 91 LDNVLIDL 98 (287)
Q Consensus 91 ~~~~l~~~ 98 (287)
+...++.+
T Consensus 82 a~~Nl~~~ 89 (95)
T d1tjca_ 82 ANGNLKYF 89 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.30 E-value=1.6e-12 Score=91.11 Aligned_cols=93 Identities=15% Similarity=0.013 Sum_probs=79.1
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhh----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-----
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVE----------KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR----- 68 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----- 68 (287)
+++.+-++++.+|+++++++.+|.++... +.+++|+..|+++++++|+++.+++++|.+|...|+
T Consensus 16 A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~ 95 (145)
T d1zu2a1 16 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDE 95 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhH
Confidence 44455578999999999999999998754 556899999999999999999999999999988764
Q ss_pred ------HHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 69 ------VDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 69 ------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
+++|+.+|+++++++|++. .+...++..
T Consensus 96 ~~~~~~~~~A~~~~~kal~l~P~~~--~~~~~L~~~ 129 (145)
T d1zu2a1 96 TEAKHNFDLATQFFQQAVDEQPDNT--HYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHhHHHhhhhhhcccccCCCHH--HHHHHHHHH
Confidence 7899999999999999887 556666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.27 E-value=9.3e-12 Score=95.81 Aligned_cols=134 Identities=14% Similarity=0.009 Sum_probs=105.5
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRL 105 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 105 (287)
++..+..|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++++++|++. ..+..++.++...+..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--PGASQLRHLVKAAQAR 80 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHhcccc
Confidence 45567889999999999999999999999999999999999999999999999999999887 6677777766544444
Q ss_pred HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 106 DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 106 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
+++...+.+ + .+...|.....+...+..+...|++++|...+.++.+..|..+..
T Consensus 81 ~~a~~~~~~-----~--------------------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 81 KDFAQGAAT-----A--------------------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHHTTSCCC-----E--------------------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHhhh-----h--------------------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 333221111 0 122234456667778899999999999999999999999887644
Q ss_pred H
Q 023081 186 C 186 (287)
Q Consensus 186 ~ 186 (287)
+
T Consensus 136 ~ 136 (264)
T d1zbpa1 136 A 136 (264)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.05 E-value=7.4e-09 Score=74.55 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---cCCC-hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF---NGKP-TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
......|......|++++|+..|.+++.+.+....- .+.. ...... +.+....++..++.++...|++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~--------l~~~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATA--------LVEDKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHH--------HHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCc
Confidence 445566666677777777777777777766521110 0111 111111 1222577899999999999999
Q ss_pred HHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 166 TSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++|+..+++++..+|.+...| .++.++..+|++.+|+..|+++...
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999998887 8999999999999999999998653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.02 E-value=4.3e-10 Score=86.35 Aligned_cols=126 Identities=12% Similarity=0.053 Sum_probs=100.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHh
Q 023081 62 VLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141 (287)
Q Consensus 62 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~ 141 (287)
-....|++++|+..++++++.+|++. ..+..++.+++..|++++|+..|+++++++|.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~--~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-------------------- 62 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFPE-------------------- 62 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG--------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------
Confidence 34578999999999999999999998 89999999999999999999999999888775
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID-PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
+..++..++.++...+...++...+.+..... |...... ..+.++...|++++|...++++.+..+..
T Consensus 63 ------~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 63 ------YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp ------GHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ------cHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 67778888888877776666655444333322 2222222 67888999999999999999999886433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=4.5e-09 Score=75.75 Aligned_cols=97 Identities=12% Similarity=-0.012 Sum_probs=87.6
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----------------------DSALKDMAVVLKQQDRVDEAVEAIK 77 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 77 (287)
..+...|......|++++|+..|.+++.+.+.. ..++..++.++...|++++|+..++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 567789999999999999999999999986542 2567889999999999999999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
+++..+|.+. .++..++.++...|++.+|+..|+++...
T Consensus 92 ~al~~~P~~e--~~~~~l~~al~~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 92 ALTFEHPYRE--PLWTQLITAYYLSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HHHHHSTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999887 79999999999999999999999998665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=1.1e-06 Score=59.57 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=79.1
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----cCCHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK----CGRLDE 107 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~ 107 (287)
..|+++|+.+|+++.+.+ ++.+.+.++. ....+.++|+.+++++.+.. ++ .....+|.+|.. ..++++
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~~--~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN--SG--NGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhccc--ch--hhhhhHHHhhhhccccchhhHH
Confidence 347888999999888765 3345566654 34467888888888887653 23 456667777765 456788
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 179 (287)
|+++|+++.+.. ++.+.+.+|.+|.. ..++.+|+.+|+++.+..
T Consensus 78 A~~~~~~aa~~g----------------------------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 78 AAQYYSKACGLN----------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhccC----------------------------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 888888877653 46777788888776 457888888888877654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.56 E-value=2e-05 Score=59.77 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccch------
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK----CGRLDEQIELLKQKLRMIYH------ 121 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~------ 121 (287)
+|.+++.||..+...|++++|+.+|+++.+.. ++ .....+|.+|.. ..++..|..+++.+......
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~--~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--EN--SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CH--HHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence 46899999999999999999999999998764 34 577789999987 77999999999998885431
Q ss_pred hhhh-cC----CChhHHHHHHHH---------------------------------HhhhcCCCcHHHHHHHHHHHHH--
Q 023081 122 GEAF-NG----KPTKTARSHGKK---------------------------------FQVTVKQETSRILGNLGWAYMQ-- 161 (287)
Q Consensus 122 ~~~~-~~----~~~~~a~~~~~~---------------------------------~~~~~~~~~~~~~~~lg~~~~~-- 161 (287)
+..+ .+ .....+...++. +.....+.+...+..+|.++..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence 1111 11 122222222221 0112234567778888888876
Q ss_pred --cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 162 --KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 --~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
..+...+..+++.+.+ +.++.+ +++|.++.. ..++++|+.+|+++.+.
T Consensus 157 ~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 157 GTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 211 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred Ccccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence 4566777788777765 345555 489999876 67899999999999986
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=1.2e-06 Score=57.50 Aligned_cols=69 Identities=4% Similarity=-0.033 Sum_probs=44.4
Q ss_pred chHHHHhHHhHHhh---CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 19 DSPYVRAKHVQLVE---KDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 19 ~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..+.|..|.+.... .+..+|+.+++.+++.+|.. .+.++.||..|.+.|++++|..+++++++++|++.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 34556666666543 34456777777776666654 35667777777777777777777777777777664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=2e-05 Score=53.16 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCC
Q 023081 67 DRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQ 146 (287)
Q Consensus 67 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (287)
.++++|+.+|+++.+.... .....++. ....++++|+.+++++.+..
T Consensus 7 kd~~~A~~~~~kaa~~g~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--------------------------- 53 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM----FGCLSLVS--NSQINKQKLFQYLSKACELN--------------------------- 53 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT----THHHHHHT--CTTSCHHHHHHHHHHHHHTT---------------------------
T ss_pred cCHHHHHHHHHHHHHCCCh----hhhhhhcc--ccccCHHHHHHHHhhhhccc---------------------------
Confidence 3688999999999876532 23334443 23467888988888877653
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 147 ETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 147 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
++.+.+.+|.+|.. ..++++|+.+|+++.+. .++.+ ++||.+|.. ..+..+|..+|+++.+.
T Consensus 54 -~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 54 -SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 68889999999986 56799999999999875 45555 489999876 46899999999999986
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=8e-05 Score=48.64 Aligned_cols=68 Identities=9% Similarity=-0.072 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 53 DSALKDMAVVLKQQD---RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 53 ~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+++.+++|+++.+.. +..+|+..++.++..+|.+.. ..++.+|..|.+.|+|++|..++++++++.|.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~r-d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR-ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 689999999999775 467999999999998886532 58889999999999999999999999999885
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.37 Score=38.53 Aligned_cols=168 Identities=8% Similarity=-0.057 Sum_probs=96.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL 111 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 111 (287)
.+..+.+...+........+.......++ .....+++..+...+..+-....... ...+.+|..+...|+.++|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~--r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKD--EWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHH--HHHHHHHHHHHHcCChhhHHHH
Confidence 34445555555444443333322222333 34456788877777665422111223 4567888999999999999999
Q ss_pred HHHHHhccchhhh-----hcCCChhHHHHHHHHHhhhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 112 LKQKLRMIYHGEA-----FNGKPTKTARSHGKKFQVTVKQET---SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 112 ~~~al~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
|..+... +.--. ..|..+.... . .+...+.. ...-...+..+...|+...|...+..++... +..
T Consensus 342 ~~~~a~~-~~fYG~LAa~~Lg~~~~~~~---~--~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-~~~ 414 (450)
T d1qsaa1 342 LHQLMQQ-RGFYPMVAAQRIGEEYELKI---D--KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKT 414 (450)
T ss_dssp HHHHHTS-CSHHHHHHHHHTTCCCCCCC---C--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHH
T ss_pred HHHHhcC-CChHHHHHHHHcCCCCCCCc---C--CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-CHH
Confidence 9988763 21000 0011000000 0 00000000 1112346777889999999999998877532 334
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Q 023081 184 KACNLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 184 ~~~~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
....++.+..+.|.++.|+....++-
T Consensus 415 ~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 415 EQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 44588999999999999998776653
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.05 E-value=1.5 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
..+...+.-+...|+|++|+++.+++.....
T Consensus 9 H~~~RrAer~l~~~rydeAIech~kA~~yl~ 39 (83)
T d2crba1 9 HQQSRRADRLLAAGKYEEAISCHRKATTYLS 39 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4566677888888999999999888876543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.90 E-value=5.9 Score=31.13 Aligned_cols=194 Identities=7% Similarity=-0.008 Sum_probs=100.5
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------------------DSALKDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------------~~~~~~la~~~~~~g~~~~A~~~ 75 (287)
..|.+...-...+.+....|+...|......+....... ...+..........|++..|...
T Consensus 97 ~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l 176 (450)
T d1qsaa1 97 EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVL 176 (450)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHH
Confidence 345555666667777778888888888777666543222 22222344445555665555444
Q ss_pred HHHH-------------HHhchhhh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------
Q 023081 76 IKSF-------------RHLCSKQA-----------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-------- 123 (287)
Q Consensus 76 ~~~~-------------~~~~p~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------- 123 (287)
+..+ +..+|... ........+..-....+.+.|...+.......+...
T Consensus 177 ~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~ 256 (450)
T d1qsaa1 177 AGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRD 256 (450)
T ss_dssp HHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHH
Confidence 3221 11122110 001111222222234566777776666544332100
Q ss_pred hh----c-CCChhHHHHHHHHHhhhcCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHH-HHHHHHHHhc
Q 023081 124 AF----N-GKPTKTARSHGKKFQVTVKQETSRI-LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-NKA-CNLSHCLIKQ 195 (287)
Q Consensus 124 ~~----~-~~~~~~a~~~~~~~~~~~~~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-~~l~~~~~~~ 195 (287)
.. . ......+...... ......+... ...++. ....+++..+...+...-. .+.. +.. +.+|.++..+
T Consensus 257 ~~a~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~-~~~~~~r~~YW~gRa~~~~ 332 (450)
T d1qsaa1 257 IVAWRLMGNDVTDEQAKWRDD--AIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPM-EAKEKDEWRYWQADLLLER 332 (450)
T ss_dssp HHHHTSCSTTCCHHHHHHHHH--HHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCT-TGGGSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCchHHHHHHHHh--hcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCc-ccccHHHHHHHHHHHHHHc
Confidence 00 0 1122333333332 1222223333 333444 5567899999888876432 2222 233 4899999999
Q ss_pred cCHHHHHHHHHHHHhc
Q 023081 196 ARYTEARSVLEDVLLG 211 (287)
Q Consensus 196 g~~~~A~~~~~~~l~~ 211 (287)
|+.++|..+|..+...
T Consensus 333 G~~~~A~~~~~~~a~~ 348 (450)
T d1qsaa1 333 GREAEAKEILHQLMQQ 348 (450)
T ss_dssp TCHHHHHHHHHHHHTS
T ss_pred CChhhHHHHHHHHhcC
Confidence 9999999999998753
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.89 E-value=4.5 Score=28.82 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=43.3
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--CCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--GDR-VDSALKDMAVVLKQ-QDRVDEAVEAIKSF 79 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~ 79 (287)
|..-+-+..+|++..+.++|++.+.+..+++.. +|. +..-...+..+|.. .|....+...+...
T Consensus 1 ~~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~ 68 (236)
T d1o9da_ 1 PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSI 68 (236)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344456788899999999999999999999876 444 44556666666643 34445555555443
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.52 E-value=6.4 Score=27.87 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=39.4
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQ-QDRVDEAVEAIKSF 79 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~ 79 (287)
-+++++++..+.++|++.+.+..+++..+|.- ..-...+..+|.. .|....+...+...
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~i 65 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSI 65 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 46778888888999999999999988888764 3445555555532 24445555544443
|