Citrus Sinensis ID: 023085
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | 2.2.26 [Sep-21-2011] | |||||||
| Q7TP48 | 376 | Adipocyte plasma membrane | yes | no | 0.968 | 0.739 | 0.313 | 5e-33 | |
| Q3T0E5 | 412 | Adipocyte plasma membrane | yes | no | 0.968 | 0.674 | 0.310 | 8e-33 | |
| Q9D7N9 | 415 | Adipocyte plasma membrane | yes | no | 0.968 | 0.669 | 0.313 | 1e-32 | |
| Q5ZIF1 | 415 | Adipocyte plasma membrane | yes | no | 0.972 | 0.672 | 0.306 | 6e-31 | |
| Q9HDC9 | 416 | Adipocyte plasma membrane | yes | no | 0.968 | 0.668 | 0.300 | 2e-29 | |
| B5X3B2 | 416 | Adipocyte plasma membrane | N/A | no | 0.965 | 0.665 | 0.306 | 4e-29 | |
| Q803F5 | 415 | Adipocyte plasma membrane | yes | no | 0.867 | 0.6 | 0.294 | 9e-25 | |
| P94111 | 335 | Strictosidine synthase 1 | no | no | 0.609 | 0.522 | 0.284 | 8e-17 | |
| P92976 | 329 | Strictosidine synthase 3 | no | no | 0.547 | 0.477 | 0.314 | 2e-16 | |
| P18417 | 352 | Strictosidine synthase OS | N/A | no | 0.533 | 0.434 | 0.337 | 5e-10 |
| >sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 28/306 (9%)
Query: 6 VIYTATRDGWIKRLQDGTWVNWKFIDSQTL------------VGLTSTKEGHLIICDNAN 53
V++T T DG + +L++G S +G+ G L + D
Sbjct: 71 VLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNGTLFVVDAYK 130
Query: 54 GLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI 107
GL +V+ V+ LS + G K+ F ND+ DG +YFT SSSK+ +Y L +
Sbjct: 131 GLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLV 190
Query: 108 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER 167
+EG G+LL+YD + ++ D F NGV LS +ED+V+V E+ R R+ ++ G
Sbjct: 191 MEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLM 250
Query: 168 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPK 223
KG + F EN+PG PDNI + G +W+A + A + L+ IK ++ K
Sbjct: 251 KGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---K 307
Query: 224 LFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 280
LFSQ + ++ V++ G R+L DP GQ++++V+ + D +LY+ S S F
Sbjct: 308 LFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPF 367
Query: 281 IGKVQL 286
I ++ L
Sbjct: 368 ICRLSL 373
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Rattus norvegicus (taxid: 10116) |
| >sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 162/306 (52%), Gaps = 28/306 (9%)
Query: 6 VIYTATRDGWIKRLQDG---TWVNW-----KFIDSQTL----VGLTSTKEGHLIICDNAN 53
V++T T DG + +L++G T + K D + +G+ + G L + D
Sbjct: 110 VMFTGTADGRVVKLENGEVETIARFGSGPCKTRDDEPACGRPLGIRAGPNGTLFVVDAYK 169
Query: 54 GLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI 107
GL +V+ + V+ LS + G K+ F ND+ DG +YFT SSSK+ +Y L +
Sbjct: 170 GLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLL 229
Query: 108 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER 167
+EG G+LL+YD + ++ D F NGV LS ED+V+V E R R++++ G
Sbjct: 230 MEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLM 289
Query: 168 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPK 223
KG + F ENLPG PDNI + G +W+++ + A + L+ +K V+ K
Sbjct: 290 KGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIF---K 346
Query: 224 LFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 280
LFSQ + ++ +++ GT +R+L DP GQ++++V+ + HLY+ S + +
Sbjct: 347 LFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPY 406
Query: 281 IGKVQL 286
+ +++L
Sbjct: 407 LCRLRL 412
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Bos taurus (taxid: 9913) |
| >sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 158/306 (51%), Gaps = 28/306 (9%)
Query: 6 VIYTATRDGWIKRLQDG---TWVNW-----KFIDSQTL----VGLTSTKEGHLIICDNAN 53
V++T T DG + +L++G T + K D + +G+ + G L + D
Sbjct: 110 VLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRAGPNGTLFVVDAYK 169
Query: 54 GLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI 107
GL +V+ V+ LS + G K+ F ND+ DG +YFT SSSK+ +Y L +
Sbjct: 170 GLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLV 229
Query: 108 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER 167
+E G+LL+YD + ++ D F NGV LS +ED+V+V E+ R R+ ++ G
Sbjct: 230 MEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLM 289
Query: 168 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPK 223
KG + F EN+PG PDNI + G +W+A + A + L+ IK ++ K
Sbjct: 290 KGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIF---K 346
Query: 224 LFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 280
+FSQ + ++ V++ G R+L DP GQ++++V+ + D +LY+ S S F
Sbjct: 347 MFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPF 406
Query: 281 IGKVQL 286
I ++ L
Sbjct: 407 ICRLSL 412
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation. Mus musculus (taxid: 10090) |
| >sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 28/307 (9%)
Query: 6 VIYTATRDGWIKRLQDGTWVNWKFI---------DSQTL---VGLTSTKEGHLIICDNAN 53
V++T T DG I +++DG I D T +G+ L + D
Sbjct: 110 VLFTGTADGKILKIEDGEVQTVARIGHGPCGTPEDEPTCGRPLGIRVGPNNTLFVADAYY 169
Query: 54 GLHKVSEDGVENFL-----SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI 107
GL++V+ E + + + G KL F ND+ DG +YFT SSSK+ ++ +
Sbjct: 170 GLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLV 229
Query: 108 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER 167
+EG G+LL+YD + ++ G F NGV LS ED+V+V E+ R R+Y++ G
Sbjct: 230 MEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLM 289
Query: 168 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPK 223
KG + F EN+PG PDNI L+ G +W+A+ + + L+ IK ++ K
Sbjct: 290 KGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMIF---K 346
Query: 224 LFSQFIT---LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 280
L SQ L + ++ ++E G+ R+ DPTG + +V+ + + +LY+ S S F
Sbjct: 347 LLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPF 406
Query: 281 IGKVQLS 287
I ++ L
Sbjct: 407 ICRLNLQ 413
|
Gallus gallus (taxid: 9031) |
| >sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 156/306 (50%), Gaps = 28/306 (9%)
Query: 6 VIYTATRDGWIKRLQDG---TWVNW-----KFIDSQTL----VGLTSTKEGHLIICDNAN 53
V++T T DG + +L++G T + K D + + +G+ + G L + D
Sbjct: 111 VMFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYK 170
Query: 54 GLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI 107
GL +V+ + V+ LS + G + F ND+ DG +YFT SSSK+ +Y L +
Sbjct: 171 GLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLV 230
Query: 108 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER 167
+EG G+LL+YD + ++ D F NGV LS ED+V+V E+ R R+ ++ G
Sbjct: 231 MEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLM 290
Query: 168 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPK 223
KG + F EN+PG PDNI + G +W+ + + + L+ IK ++ K
Sbjct: 291 KGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIF---K 347
Query: 224 LFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 280
LFSQ + ++ +++ G R+L DP G + ++++ + D HLY+ S S F
Sbjct: 348 LFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPF 407
Query: 281 IGKVQL 286
+ ++ L
Sbjct: 408 LCRLSL 413
|
Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation. Homo sapiens (taxid: 9606) |
| >sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 152/310 (49%), Gaps = 33/310 (10%)
Query: 6 VIYTATRDGWIKRLQ---------------DGTWVNWKFIDSQTLVGLTSTKEGHLIICD 50
+IYT T DG I +++ DG+ +G+ G L + D
Sbjct: 110 LIYTGTADGKIVKIEGKSITVIARLGKPPCDGSREQEPSCGRP--LGIRVGPNGTLFVAD 167
Query: 51 NANGLHKVSE--DGVENFLS---YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYC 104
GL KV+ V N +S V G +L F ND+ DG +YFT SSS++ +Y
Sbjct: 168 AYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYL 227
Query: 105 LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164
I+E G++L+YD + T++ + FANG+ L DE+ V+V E+ R R+ +
Sbjct: 228 HLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVS 287
Query: 165 GERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAA 220
G KG ++TF +NLPG PDNI + G +W+A+ + + L+ IK ++
Sbjct: 288 GLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIF- 346
Query: 221 YPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 277
KLFSQ + + +I + E G +R+ DP G + ++V+ + D HLY+ S
Sbjct: 347 --KLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFR 404
Query: 278 SNFIGKVQLS 287
S ++ K+ LS
Sbjct: 405 SPYLCKLDLS 414
|
Salmo salar (taxid: 8030) |
| >sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 16/265 (6%)
Query: 36 VGLTSTKEGHLIICDNANGLHKVSE--DGVENFLS---YVNGSKLRFANDVVEASDGS-L 89
+G+ G L + D GL +V+ V++ +S + G +L F ND+ DG +
Sbjct: 152 LGIRVGPNGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKV 211
Query: 90 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149
YFT SSS++ ++ I+E G++L+YD + ++ + F NG+ L DE+ V+
Sbjct: 212 YFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVL 271
Query: 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 205
V E+ R ++ + G KG ++TF ENLPG PDNI + G +W+A+ + +
Sbjct: 272 VAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML 331
Query: 206 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 262
L+ +K ++ KLFSQ L ++ + DGT +R+ DP G + ++ +
Sbjct: 332 DFLSQRPWLKKLIF---KLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSS 388
Query: 263 SGLQVDNHLYVISLTSNFIGKVQLS 287
+ HLY+ S S ++ K+ LS
Sbjct: 389 EAHEYSGHLYLGSFRSPYLCKLDLS 413
|
Danio rerio (taxid: 7955) |
| >sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 11/186 (5%)
Query: 42 KEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSSKY 98
K G L + D GLH +S G V+G +F + + V+ + G +YFT SS++
Sbjct: 107 KTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRF 166
Query: 99 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 158
P + + + G+L KYDPS+ + T++ +G + G A+S D +V+V + K
Sbjct: 167 SPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNI 226
Query: 159 RKYWLKGERKGKLETFAENLPGAPDNIN-LAPDGTFWIA------IIKLDARRMKILNSS 211
++YW+KG + G E F ++ PDNI + G FW+A I+ + +K+ ++
Sbjct: 227 KRYWIKGPKAGSSEDFTNSV-SNPDNIKRIGSTGNFWVASVVNKIIVPTNPSAVKVNSNG 285
Query: 212 KLIKHV 217
++++ +
Sbjct: 286 EVLQTI 291
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 41 TKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSSK 97
TK G L + D A GLH + G + V G F + + V+ + G +YFT SS
Sbjct: 108 TKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSST 167
Query: 98 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157
+ P + + G+ KYDPS + T++ +G + G A+S D +V+V + K
Sbjct: 168 FGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSN 227
Query: 158 CRKYWLKGERKGKLETFAENLPGAPDNIN-LAPDGTFWIAII 198
++YW+KG + G E F ++ PDNI + G FW+A +
Sbjct: 228 IKRYWIKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVASV 268
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
| >sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 42 KEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFT-VSSSK 97
K + I D L V ++G + V G ++ V V+ G +YFT VSS
Sbjct: 116 KNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIH 175
Query: 98 YLPHEYCLDILEGKPH-GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156
E +I+ G+L+KYDPS+ TTL+ + G +S D +VVV E
Sbjct: 176 DDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSN 235
Query: 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196
R KYWL+G +KG E F +P P NI DG FW++
Sbjct: 236 RIVKYWLEGPKKGSAE-FLVTIPN-PGNIKRNSDGHFWVS 273
|
Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis. Catharanthus roseus (taxid: 4058) EC: 4 EC: . EC: 3 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| 225444700 | 368 | PREDICTED: adipocyte plasma membrane-ass | 0.996 | 0.777 | 0.571 | 7e-94 | |
| 297738547 | 461 | unnamed protein product [Vitis vinifera] | 1.0 | 0.622 | 0.555 | 9e-94 | |
| 225444698 | 650 | PREDICTED: adipocyte plasma membrane-ass | 1.0 | 0.441 | 0.555 | 1e-93 | |
| 357450079 | 372 | Adipocyte plasma membrane-associated pro | 0.996 | 0.768 | 0.550 | 4e-92 | |
| 255550417 | 356 | Adipocyte plasma membrane-associated pro | 0.996 | 0.803 | 0.557 | 5e-92 | |
| 388499476 | 372 | unknown [Medicago truncatula] | 0.996 | 0.768 | 0.550 | 7e-92 | |
| 297738546 | 382 | unnamed protein product [Vitis vinifera] | 0.989 | 0.743 | 0.550 | 2e-90 | |
| 225444696 | 365 | PREDICTED: adipocyte plasma membrane-ass | 0.989 | 0.778 | 0.550 | 3e-90 | |
| 357450077 | 352 | Adipocyte plasma membrane-associated pro | 0.996 | 0.812 | 0.536 | 6e-89 | |
| 388492006 | 352 | unknown [Medicago truncatula] | 0.996 | 0.812 | 0.529 | 3e-88 |
| >gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 216/287 (75%), Gaps = 1/287 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
D+ G++YTATRDGWIKRL ++G+W +WK I L+G+T+ + G + +CD GL KV
Sbjct: 79 FDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTARAGGIFVCDAQKGLLKVG 138
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDGV S+VNGS++RFA+DV+EASDGSLYF+V+SSK+ H + LD+LE KPHGQLLKY
Sbjct: 139 EDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHHWYLDLLEAKPHGQLLKY 198
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
DP N T+++ D F NGVALS+DED++VVCE+WKFRC KYWLKGERKG+ ETF +NLP
Sbjct: 199 DPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTETFIDNLP 258
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
PDNINLAPDG+FWIA+IKL + + +++SK +KH LA +PKLF A ++
Sbjct: 259 NGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFPKLFQLVNGSNEKATVVK 318
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
VA DG I+ DP G++MSFVTS L+ ++HLY+ SL +NFIGK+ L
Sbjct: 319 VAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIGKLPL 365
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 349 bits (895), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 160/288 (55%), Positives = 218/288 (75%), Gaps = 1/288 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
D G++YTATRDGWIKRL ++G+W +W+ I TL+G+T+T+ G +++CD GL KV
Sbjct: 172 FDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCDTQKGLLKVG 231
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDGV S+VNGS++RFA+DV+EASDGSLYF+V+SSK+ H++ LD+LE KPHGQLLKY
Sbjct: 232 EDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPHGQLLKY 291
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
DP N T+++ D FANGVALS+DED++VVCE+WKFRC KYWLKGERKG+ E F +NLP
Sbjct: 292 DPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTEVFVDNLP 351
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
G PDNINLAPDG+FWIA+++L M +++SK KH++A +PKL + A ++
Sbjct: 352 GGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLVQGMQKKAMVVK 411
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 287
V DG +++ DP G +MSFVT+ L+ + HLY+ SL +NFIGK+ L+
Sbjct: 412 VGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPLT 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 160/288 (55%), Positives = 218/288 (75%), Gaps = 1/288 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
D G++YTATRDGWIKRL ++G+W +W+ I TL+G+T+T+ G +++CD GL KV
Sbjct: 361 FDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCDTQKGLLKVG 420
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDGV S+VNGS++RFA+DV+EASDGSLYF+V+SSK+ H++ LD+LE KPHGQLLKY
Sbjct: 421 EDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPHGQLLKY 480
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
DP N T+++ D FANGVALS+DED++VVCE+WKFRC KYWLKGERKG+ E F +NLP
Sbjct: 481 DPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTEVFVDNLP 540
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
G PDNINLAPDG+FWIA+++L M +++SK KH++A +PKL + A ++
Sbjct: 541 GGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLVQGMQKKAMVVK 600
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 287
V DG +++ DP G +MSFVT+ L+ + HLY+ SL +NFIGK+ L+
Sbjct: 601 VGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPLT 648
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 224/287 (78%), Gaps = 1/287 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
+DKNGV+YTATRDGWIKR+ ++ W NWK IDS +L+G+T++K+G LI+CD + GL KV+
Sbjct: 82 VDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVT 141
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDG LS VNGS+L FA+DV+EASDG++YF+V S+K+ H++ LD+LE +PHGQLLKY
Sbjct: 142 EDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKY 201
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
+P+ N T +V D FANGVALS+DEDYVVVCE+WKFRC ++WLKG GK + F ENLP
Sbjct: 202 NPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINNGKTDIFIENLP 261
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
G PDNINLAPDG+FWIA+++L ++R+ +++S + KH+LA++P+L + + A +++
Sbjct: 262 GGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLN 321
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
V +G IIR D G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 322 VGTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 160/287 (55%), Positives = 220/287 (76%), Gaps = 1/287 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
MDK+GV+YTA RD WIKR+ ++G+W NWK IDS L+G+ +KEG LI+CD GL KV+
Sbjct: 67 MDKDGVLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKEGGLIVCDADTGLLKVT 126
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDGV S VNGSK++FA+D +E+SDG++YF+V S+K+ H + LD+LE +PHGQLLKY
Sbjct: 127 EDGVTVLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLKY 186
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
DP+SN T+++ DG F NGVALS +EDY+V CESWKFRC+K+WLKGE KGK ET +NLP
Sbjct: 187 DPTSNQTSVLLDGLCFPNGVALSWEEDYLVFCESWKFRCQKHWLKGEDKGKTETLIDNLP 246
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
GAPDNINLAPDG+FWI ++++ A ++ +++SK KH++A++PKL + A +++
Sbjct: 247 GAPDNINLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFPKLIELVNGVEKNAMVVN 306
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
VA DG I R DP G+++SFVTS ++ D HLY+ SL +NF+GK+ L
Sbjct: 307 VAADGKITRKFDDPDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPL 353
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 224/287 (78%), Gaps = 1/287 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
+DKNGV+YTATRDGWIKR+ ++ W NWK IDS +L+G+T++K+G LI+CD + GL KV+
Sbjct: 82 VDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVT 141
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDG LS VNGS+L FA+DV+EASDG++YF+V S+K+ H++ LD+LE +PHGQLLKY
Sbjct: 142 EDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKY 201
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
+P+ N T +V D FANGVALS+DEDYVVVCE+WKFRC ++WLKG GK + F ENLP
Sbjct: 202 NPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGIDNGKTDIFIENLP 261
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
G PDNINLAPDG+FWIA+++L ++R+ +++S + KH+LA++P+L + + A +++
Sbjct: 262 GGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLN 321
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
V +G IIR D G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 322 VGTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 219/287 (76%), Gaps = 3/287 (1%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
D G++YTATRDGWIKRL ++G+W +W+ I +L+G+T T+ G +I+CD GL KV
Sbjct: 95 FDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVG 154
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDGV S+VNGSK++FANDV+EA+DGS+YF+V+S++++ + LD+LE KPHGQLLKY
Sbjct: 155 EDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKY 212
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
DP N T+++ D FANGVALS+DED++VVCE+WKFRC KYWL+GERKG+ ETF +NLP
Sbjct: 213 DPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLP 272
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
G PDN+NLAPDG+FWIA+IK+ + + +++SK +KH+LA +PKLF A ++
Sbjct: 273 GGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVK 332
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
VA DG II DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 333 VAADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 219/287 (76%), Gaps = 3/287 (1%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
D G++YTATRDGWIKRL ++G+W +W+ I +L+G+T T+ G +I+CD GL KV
Sbjct: 78 FDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVG 137
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDGV S+VNGSK++FANDV+EA+DGS+YF+V+S++++ + LD+LE KPHGQLLKY
Sbjct: 138 EDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKY 195
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
DP N T+++ D FANGVALS+DED++VVCE+WKFRC KYWL+GERKG+ ETF +NLP
Sbjct: 196 DPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLP 255
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
G PDN+NLAPDG+FWIA+IK+ + + +++SK +KH+LA +PKLF A ++
Sbjct: 256 GGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVK 315
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
VA DG II DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 316 VAADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 362
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 154/287 (53%), Positives = 219/287 (76%), Gaps = 1/287 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
+DK+GV+YTATRDGWIKR+ ++ W NWK IDS +L+G+T++K+G LI+CD GL KV+
Sbjct: 63 VDKDGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVT 122
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDG LS VNGS+L FA+D++EASDG++YF+V S+K+ H + LD+LE +PHGQLL+Y
Sbjct: 123 EDGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRY 182
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
+P SN T +V D FANGVALS+DEDY+VVCE+WKFRC K+WLKG KGK E F ENLP
Sbjct: 183 NPLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLP 242
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
PDNINLAPDG+FWIA+I++ + RM +++SK+ KH++A +P+L + ++ A ++
Sbjct: 243 AGPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTKSAMVVK 302
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
V +G II+ D G+ ++FVTS ++ +++LY+ SL ++F+GK L
Sbjct: 303 VTTEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/287 (52%), Positives = 219/287 (76%), Gaps = 1/287 (0%)
Query: 1 MDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59
+DK+GV+YTATRDGWIKR+ ++ W NWK +DS +L+G+T++K+G LI+CD GL KV+
Sbjct: 63 VDKDGVLYTATRDGWIKRMVRNENWENWKHVDSSSLLGITTSKDGGLIVCDTTLGLLKVT 122
Query: 60 EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119
EDG LS VNGS+L FA+D++EASDG++YF+V S+K+ H + LD+LE +PHGQLL+Y
Sbjct: 123 EDGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRY 182
Query: 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP 179
+P SN T +V D FANGVALS+DEDY+VVCE+WKFRC K+WLKG KGK E F ENLP
Sbjct: 183 NPLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLP 242
Query: 180 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239
PDNINLAPDG+FWIA+I++ + RM +++SK+ K+++A +P+L + ++ A ++
Sbjct: 243 AGPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSVTKSAMVVK 302
Query: 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
V +G II+ D G+ ++FVTS ++ +++LY+ SL ++F+GK L
Sbjct: 303 VTTEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| TAIR|locus:2081860 | 371 | AT3G51440 [Arabidopsis thalian | 0.968 | 0.749 | 0.335 | 4.3e-38 | |
| TAIR|locus:2081845 | 371 | YLS2 "YELLOW-LEAF-SPECIFIC GEN | 0.961 | 0.743 | 0.327 | 4.3e-38 | |
| TAIR|locus:2081830 | 370 | SSL4 "strictosidine synthase-l | 0.961 | 0.745 | 0.327 | 1.1e-37 | |
| UNIPROTKB|E2RPE9 | 415 | APMAP "Uncharacterized protein | 0.867 | 0.6 | 0.324 | 1e-34 | |
| RGD|1308874 | 376 | Apmap "adipocyte plasma membra | 0.864 | 0.659 | 0.333 | 1.3e-34 | |
| UNIPROTKB|F1LLW3 | 386 | RGD1308874 "Protein RGD1308874 | 0.864 | 0.642 | 0.333 | 1.3e-34 | |
| UNIPROTKB|Q3T0E5 | 412 | APMAP "Adipocyte plasma membra | 0.864 | 0.601 | 0.321 | 1.7e-34 | |
| MGI|MGI:1919131 | 415 | Apmap "adipocyte plasma membra | 0.864 | 0.597 | 0.325 | 2.7e-34 | |
| TAIR|locus:2081875 | 371 | AT3G51450 [Arabidopsis thalian | 0.961 | 0.743 | 0.318 | 7.4e-34 | |
| UNIPROTKB|Q5ZIF1 | 415 | APMAP "Adipocyte plasma membra | 0.864 | 0.597 | 0.321 | 1e-32 |
| TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 98/292 (33%), Positives = 156/292 (53%)
Query: 2 DKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTL-----VGLTSTKEGHLIICDNANGLH 56
+ +G IYT DGW+KR++ VN ++ +G+ G +I+ D GL
Sbjct: 77 EDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFGIHGEVIVADAYKGLL 136
Query: 57 KVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114
+S DG E +G + + + V A +G LYFT S KY H++ DILEGKPHG
Sbjct: 137 NISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYNLHQFSFDILEGKPHG 196
Query: 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF 174
+L+ +DP++ +T ++ YFANGV+LS D+ ++V CE+ RC KY++ G G++E F
Sbjct: 197 RLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRRCSKYYING---GRVELF 253
Query: 175 AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234
+ LPG PDNI DG +WIA+ K+ ++ + A K + + +
Sbjct: 254 IQGLPGYPDNIRYDGDGHYWIAMPSGVTTLWKLSMKYPFLRKITAMAAKYGYEPMFMEN- 312
Query: 235 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
A ++ V DG I D Q +S +T+G+++ N+LY SL + I ++ L
Sbjct: 313 AGVLQVDLDGNPIAYYHD---QALSHITTGVKIGNYLYCGSLWHSHILRLDL 361
|
|
| TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 96/293 (32%), Positives = 156/293 (53%)
Query: 2 DKNGVIYTATRDGWIKRLQ------DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGL 55
D N +IYT DGW+KR+ D +W + L G+ G +I+ D GL
Sbjct: 78 DSN-LIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPL-GIAFGVHGEVIVADAYKGL 135
Query: 56 HKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113
+S DG E G K + + V A +G LYFT +S KY H+ DILEGKPH
Sbjct: 136 LNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYKYTLHQVKFDILEGKPH 195
Query: 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET 173
G+L+ +DP++ +T ++ YFANGV++S D+ +++ CE+ RC KY++ ER +E
Sbjct: 196 GRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRRCSKYYINEER---VEV 252
Query: 174 FAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233
F + LPG PDNI DG +WIA++ + ++ ++ + A K + + +
Sbjct: 253 FIQGLPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKITAIAAKYGVELMFMKN 312
Query: 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
A ++ V DG I D Q +S +T+G+++ N+LY ++ ++I ++ L
Sbjct: 313 -AGVLQVDLDGNPIAYYHD---QRLSHITTGIKIGNYLYCGNILHSYIIRLDL 361
|
|
| TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 96/293 (32%), Positives = 154/293 (52%)
Query: 2 DKNGVIYTATRDGWIKRLQ------DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGL 55
D N +IYT DGW+KR+ D +W + L G+ G +I+ D GL
Sbjct: 78 DSN-LIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPL-GIAFGLHGEVIVADANKGL 135
Query: 56 HKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113
+S+ G E +G + + + V A +G LYFT +SSKY +++ D LEGKPH
Sbjct: 136 LSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKYDFYQFIFDFLEGKPH 195
Query: 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET 173
G+++ +DP++ T ++ YFANG+++S D+ + V CE+ RC KY++ ER +E
Sbjct: 196 GRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRCSKYYISEER---VEV 252
Query: 174 FAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233
F + LPG PDNI DG +WIA+I K+ ++ ++ K + +++
Sbjct: 253 FIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYLFLRKLIYMAAKYGVELLSIKN 312
Query: 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
A ++ V DG I D S +TSG+++ NHLY SL ++I ++ L
Sbjct: 313 AA-VLQVDLDGNPIAMYHDHP---FSHITSGVKIGNHLYFGSLLHSYITRLDL 361
|
|
| UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 86/265 (32%), Positives = 143/265 (53%)
Query: 35 LVGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDGS- 88
L+G+ + G L + D GL +V+ + V+ +S + G K+ F ND+ DG
Sbjct: 151 LLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQDGKK 210
Query: 89 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148
+YFT SSSK+ +Y L ++EG G+LL+YD + ++ D F NGV LS +ED+V
Sbjct: 211 IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFV 270
Query: 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----R 204
+V E+ R R++++ G KG + F ENLPG PDNI + G +W+ + + +
Sbjct: 271 LVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSNPGFSM 330
Query: 205 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFV 261
+ L+ IK ++ KLFSQ + ++ ++ G R+L DPTGQ+ S+V
Sbjct: 331 LDFLSERPYIKRMIF---KLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQVASYV 387
Query: 262 TSGLQVDNHLYVISLTSNFIGKVQL 286
+ + + HLY+ S + F+ ++ L
Sbjct: 388 SEVHEYNGHLYLGSFRAPFLCRLSL 412
|
|
| RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 88/264 (33%), Positives = 140/264 (53%)
Query: 36 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 89
+G+ G L + D GL +V+ V+ LS + G K+ F ND+ DG +
Sbjct: 113 LGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKI 172
Query: 90 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149
YFT SSSK+ +Y L ++EG G+LL+YD + ++ D F NGV LS +ED+V+
Sbjct: 173 YFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 232
Query: 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 205
V E+ R R+ ++ G KG + F EN+PG PDNI + G +W+A + A +
Sbjct: 233 VAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 292
Query: 206 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 262
L+ IK ++ KLFSQ + ++ V++ G R+L DP GQ++++V+
Sbjct: 293 DFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 349
Query: 263 SGLQVDNHLYVISLTSNFIGKVQL 286
+ D +LY+ S S FI ++ L
Sbjct: 350 EAHEHDGYLYLGSFRSPFICRLSL 373
|
|
| UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 88/264 (33%), Positives = 140/264 (53%)
Query: 36 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 89
+G+ G L + D GL +V+ V+ LS + G K+ F ND+ DG +
Sbjct: 123 LGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKI 182
Query: 90 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149
YFT SSSK+ +Y L ++EG G+LL+YD + ++ D F NGV LS +ED+V+
Sbjct: 183 YFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 242
Query: 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 205
V E+ R R+ ++ G KG + F EN+PG PDNI + G +W+A + A +
Sbjct: 243 VAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 302
Query: 206 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 262
L+ IK ++ KLFSQ + ++ V++ G R+L DP GQ++++V+
Sbjct: 303 DFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 359
Query: 263 SGLQVDNHLYVISLTSNFIGKVQL 286
+ D +LY+ S S FI ++ L
Sbjct: 360 EAHEHDGYLYLGSFRSPFICRLSL 383
|
|
| UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 85/264 (32%), Positives = 144/264 (54%)
Query: 36 VGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SL 89
+G+ + G L + D GL +V+ + V+ LS + G K+ F ND+ DG +
Sbjct: 152 LGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKI 211
Query: 90 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149
YFT SSSK+ +Y L ++EG G+LL+YD + ++ D F NGV LS ED+V+
Sbjct: 212 YFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVL 271
Query: 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 205
V E R R++++ G KG + F ENLPG PDNI + G +W+++ + A +
Sbjct: 272 VVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSML 331
Query: 206 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 262
L+ +K V+ KLFSQ + ++ +++ GT +R+L DP GQ++++V+
Sbjct: 332 DFLSERPFLKKVIF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVS 388
Query: 263 SGLQVDNHLYVISLTSNFIGKVQL 286
+ HLY+ S + ++ +++L
Sbjct: 389 EAHEHSGHLYLGSFRAPYLCRLRL 412
|
|
| MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 86/264 (32%), Positives = 140/264 (53%)
Query: 36 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 89
+G+ + G L + D GL +V+ V+ LS + G K+ F ND+ DG +
Sbjct: 152 LGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKI 211
Query: 90 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149
YFT SSSK+ +Y L ++E G+LL+YD + ++ D F NGV LS +ED+V+
Sbjct: 212 YFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 271
Query: 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 205
V E+ R R+ ++ G KG + F EN+PG PDNI + G +W+A + A +
Sbjct: 272 VAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 331
Query: 206 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 262
L+ IK ++ K+FSQ + ++ V++ G R+L DP GQ++++V+
Sbjct: 332 DFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 388
Query: 263 SGLQVDNHLYVISLTSNFIGKVQL 286
+ D +LY+ S S FI ++ L
Sbjct: 389 EAHEHDGYLYLGSFRSPFICRLSL 412
|
|
| TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 93/292 (31%), Positives = 150/292 (51%)
Query: 3 KNGVIYTATRDGWIKRLQDGTWVN------WKFIDSQTLVGLTSTKEGHLIICDNANGLH 56
++ +IYT DGW+KR++ VN W + L G+ G +I+ D GL
Sbjct: 78 ESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPL-GIAFGIHGEVIVADVHKGLL 136
Query: 57 KVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114
+S DG E +G K + + V A +G LYFT +S KY ++ LD+LEGKP G
Sbjct: 137 NISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKYTLNQLSLDMLEGKPFG 196
Query: 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF 174
+LL +DP++ +T ++ YFANG+ +S D+ +++ CE+ RC KY++ ER +E F
Sbjct: 197 RLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKRCSKYYISEER---VEVF 253
Query: 175 AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234
++LPG PDNI DG +WIA+ I ++ + A K + +
Sbjct: 254 TQSLPGYPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKLTAMVAK-YGVDLMFMEN 312
Query: 235 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286
A ++ V DG I DP +S + + ++ +LY SL+ + I ++ L
Sbjct: 313 AGVLQVDLDGNPIAYYHDPK---LSHIATCDKIGKYLYCGSLSQSHILRLDL 361
|
|
| UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 85/264 (32%), Positives = 141/264 (53%)
Query: 36 VGLTSTKEGHLIICDNANGLHKVSED-GVENFL----SYVNGSKLRFANDVVEASDG-SL 89
+G+ L + D GL++V+ G L + + G KL F ND+ DG +
Sbjct: 152 LGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKI 211
Query: 90 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149
YFT SSSK+ ++ ++EG G+LL+YD + ++ G F NGV LS ED+V+
Sbjct: 212 YFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVL 271
Query: 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA--IIKLDA--RRM 205
V E+ R R+Y++ G KG + F EN+PG PDNI L+ G +W+A +++ + +
Sbjct: 272 VLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML 331
Query: 206 KILNSSKLIKHVLAAYPKLFSQ-FIT--LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVT 262
L+ IK ++ KL SQ +T L + ++ ++E G+ R+ DPTG + +V+
Sbjct: 332 DFLSEKPWIKRMIF---KLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVS 388
Query: 263 SGLQVDNHLYVISLTSNFIGKVQL 286
+ + +LY+ S S FI ++ L
Sbjct: 389 EAHEHNGYLYLGSFRSPFICRLNL 412
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00016422001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (368 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 287 | |||
| pfam03088 | 89 | pfam03088, Str_synth, Strictosidine synthase | 1e-27 | |
| COG3386 | 307 | COG3386, COG3386, Gluconolactonase [Carbohydrate t | 6e-23 | |
| pfam08450 | 245 | pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re | 1e-11 | |
| COG3386 | 307 | COG3386, COG3386, Gluconolactonase [Carbohydrate t | 2e-04 | |
| pfam01731 | 86 | pfam01731, Arylesterase, Arylesterase | 0.001 |
| >gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-27
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 82 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 141
V+ G LYFT SSS+Y + +LEG G+L+KYDPS+ +T ++ YF NG+AL
Sbjct: 5 VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64
Query: 142 SRDEDYVVVCESWKFRCRKYWLKGE 166
S D +V+ CE+ R KYW+KG
Sbjct: 65 SPDGSFVLFCETPMKRISKYWIKGP 89
|
Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89 |
| >gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 6e-23
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 15/167 (8%)
Query: 37 GLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 95
G G LI C++ L G + +G L ND V DG ++F
Sbjct: 71 GALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG--- 127
Query: 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155
+ L E +P G L + DP + L+ D NG+A S D + V ++
Sbjct: 128 ---DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184
Query: 156 FRCRKYWL------KGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196
R +Y L G R+G + + PG PD + + DG W+A
Sbjct: 185 NRIHRYDLDPATGPIGGRRGFV--DFDEEPGLPDGMAVDADGNLWVA 229
|
Length = 307 |
| >gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 45/193 (23%), Positives = 64/193 (33%), Gaps = 23/193 (11%)
Query: 14 GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLH--KVSEDGVENFLSY 69
G I RL G W + L +G LI+ GL + +
Sbjct: 22 GRIHRLDPATGKETVWDLPGPVGAIALR--DDGRLIVA-LKRGLALLDLDTGELTTLADL 78
Query: 70 VNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128
RF ND DG +F DI G G L + DP +
Sbjct: 79 EPDEPLNRF-NDGKVDPDGRFWFGT---------MGFDIAPGGEPGALYRLDPDGKVE-R 127
Query: 129 VADGFYFANGVALSRDEDYVVVCESWKFRCRKY--WLKGERKGKLETFA--ENLPGAPDN 184
V DG +NG+A S D + +S R + G FA ++ G PD
Sbjct: 128 VLDGITISNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRRVFADFKDGDGEPDG 187
Query: 185 INLAPDGTFWIAI 197
+ + +G W+A
Sbjct: 188 MAVDAEGNVWVAR 200
|
This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245 |
| >gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 112 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL 171
G++ + DP + + F++G + ++ CE L + GK+
Sbjct: 45 LGGRIHRLDPETGKKRVFPSPGGFSSGALIDAG-GRLIACEHGVRL-----LDPDTGGKI 98
Query: 172 ETFAENLPGAPDN----INLAPDGTFWI 195
AE G P N + PDG W
Sbjct: 99 TLLAEPEDGLPLNRPNDGVVDPDGRIWF 126
|
Length = 307 |
| >gnl|CDD|190082 pfam01731, Arylesterase, Arylesterase | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.001
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 138
ND+V S Y T P L++ G ++ Y PS VA GF FANG
Sbjct: 1 NDIVAVGPDSFYATNDHYFGDPFLQNLEMYLGLIWTGVVYYSPSEVKV--VASGFSFANG 58
Query: 139 VALSRDEDYVVVCES 153
+ S D+ Y+ V S
Sbjct: 59 INYSPDKKYIYVASS 73
|
This family consists of arylesterases (Also known as serum paraoxonase) EC:3.1.1.2. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity. Human arylesterase (PON1) is associated with HDL and may protect against LDL oxidation. Length = 86 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 100.0 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.95 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.94 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.87 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.78 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.55 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 99.55 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 99.48 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.46 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 99.44 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.38 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.36 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.33 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.25 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.22 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.17 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 99.15 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.14 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.13 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 99.13 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.09 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.93 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.92 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.86 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.74 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.68 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.66 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.63 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.6 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.57 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 98.55 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 98.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.54 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.54 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.51 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.51 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.5 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.48 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.42 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.41 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.39 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.39 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.38 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 98.38 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.37 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.36 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.36 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.34 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 98.33 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.3 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.29 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.29 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.29 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.23 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.22 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.21 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.18 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.18 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.16 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.14 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 98.13 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.11 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.11 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.08 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.07 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.06 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.04 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.04 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.99 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 97.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.91 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.91 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.9 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.89 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.87 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.84 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.83 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.78 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.76 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.72 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.69 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.69 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.67 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.67 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.64 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.63 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.59 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.55 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.55 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.54 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.54 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.51 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.48 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.48 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.47 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 97.46 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.43 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.39 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.38 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.32 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.3 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.29 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.27 | |
| PTZ00421 | 493 | coronin; Provisional | 97.22 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 97.22 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.21 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 97.21 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.21 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.16 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.12 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.11 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.08 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 96.99 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.94 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 96.92 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.86 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.85 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.83 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 96.77 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.75 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.72 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.65 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 96.63 | |
| PTZ00420 | 568 | coronin; Provisional | 96.62 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.6 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.59 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.58 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.56 | |
| PTZ00420 | 568 | coronin; Provisional | 96.55 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 96.51 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 96.45 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.41 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 96.41 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 96.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.31 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.31 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.23 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.21 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.21 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 96.16 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.13 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 96.1 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 96.09 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 96.06 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 96.0 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 95.92 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.88 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.88 | |
| PTZ00421 | 493 | coronin; Provisional | 95.86 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 95.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 95.79 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 95.77 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 95.76 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.72 | |
| PF07494 | 24 | Reg_prop: Two component regulator propeller; Inter | 95.7 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 95.65 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 95.63 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.51 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.49 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 95.45 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 95.44 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 95.43 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 95.42 | |
| PF07494 | 24 | Reg_prop: Two component regulator propeller; Inter | 95.41 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 95.31 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.28 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 95.25 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 95.23 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.11 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.99 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.88 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.88 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 94.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.56 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 94.45 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 94.14 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 94.05 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 93.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 93.81 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 93.78 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 93.69 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.31 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.27 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 93.2 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 93.19 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 93.15 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 93.14 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 93.14 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 93.13 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 93.1 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 93.03 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.03 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 92.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.79 | |
| PF09826 | 521 | Beta_propel: Beta propeller domain; InterPro: IPR0 | 92.77 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 92.59 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 92.52 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 92.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 92.47 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 92.38 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 92.16 | |
| KOG0918 | 476 | consensus Selenium-binding protein [Inorganic ion | 92.01 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 91.98 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 91.94 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 91.79 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 91.59 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.56 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 91.38 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.31 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.25 | |
| PF14517 | 229 | Tachylectin: Tachylectin; PDB: 1TL2_A. | 91.03 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 91.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 90.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 90.92 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 90.61 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 90.52 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 90.2 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 89.67 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 89.66 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 89.6 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 89.49 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 89.04 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 89.02 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 88.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 88.93 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 88.61 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 88.61 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 88.21 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 88.21 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 88.08 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 87.95 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 87.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 87.41 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 87.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 87.39 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 87.07 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 86.76 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 86.44 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 86.28 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 86.21 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 86.19 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 86.1 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 85.85 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.82 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 85.77 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 85.57 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 85.43 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 85.35 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.24 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 84.87 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 84.74 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 84.34 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 83.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 83.7 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 83.05 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 82.74 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 82.53 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 81.75 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 81.1 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 80.63 |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=225.45 Aligned_cols=256 Identities=35% Similarity=0.631 Sum_probs=227.1
Q ss_pred eCCccccCeEECCCC-cEEEEeCCCceEEEcc-CC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeee
Q 023085 30 IDSQTLVGLTSTKEG-HLIICDNANGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 106 (287)
Q Consensus 30 ~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~ 106 (287)
.+++|. ||+++..| .||||+..-|++.+++ .| .+.+.....+.++...+++.++++|.+|++|++.+|+.+.+...
T Consensus 113 ~CGRPL-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 113 LCGRPL-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred ccCCcc-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe
Confidence 468899 99999888 9999998889999995 45 67777777788888999999999999999999999999999988
Q ss_pred eeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 107 ILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
++.+...|.+++||+.++..+.+...+.+|||++.++|+..+.++++...+|.+|++++++.++.+.|++.++|.|+||.
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR 271 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIR 271 (376)
T ss_pred eecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCccee
Confidence 88888889999999998888888999999999999999999999999889999999998888888889877999999999
Q ss_pred eCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc----CCCceEEEEECCCCcEEEEEECCCCccccceE
Q 023085 187 LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT----LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVT 262 (287)
Q Consensus 187 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (287)
.+++|++||+....++..++++..+|.+|+++...|..+..... ..+...|.+.+.+|++++.++++++.....++
T Consensus 272 ~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~s 351 (376)
T KOG1520|consen 272 RDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVS 351 (376)
T ss_pred ECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEE
Confidence 99999999999999999999999999999998877666653211 11225677778999999999999988777778
Q ss_pred EEEEeCCEEEEEecCCCeEEEEeC
Q 023085 263 SGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 263 ~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.+.+|+||+|+...++|.++++
T Consensus 352 ev~E~dg~LyiGS~~~p~i~~lkl 375 (376)
T KOG1520|consen 352 EVGEHDGHLYIGSLFNPYIARLKL 375 (376)
T ss_pred EEeecCCeEEEcccCcceeEEEec
Confidence 888888999999999999999987
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=185.04 Aligned_cols=222 Identities=28% Similarity=0.465 Sum_probs=168.5
Q ss_pred CCCcEEEEe-cCCeEEEEE-C-CceEEEEeeCCccccCeEEC-CCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCc-cc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGS-KL 75 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d-~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~-~~ 75 (287)
.+|.||+.+ .++.|++++ . +....+..+. |. +++++ ++|++|++.. .++.+++ .++ ++.+.....+. +.
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCT
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCccc
Confidence 378999988 688999999 4 4443333333 77 99998 8899999985 5777788 778 77776654333 67
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..||+++++++|++|+++....... ....+.|++++++ +++..+...+..||||+++|+++.||++++..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 8999999999999999976521100 0011789999998 88888888889999999999999999999999
Q ss_pred CEEEEEEecCC--CCcceeEEecc--CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 156 FRCRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 156 ~~l~~~~~~~~--~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
++|++|+++.. .+...+.+... ..+.|+|+++|++|+||++...
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-------------------------------- 203 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-------------------------------- 203 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET--------------------------------
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC--------------------------------
Confidence 99999999743 24445555432 2235999999999999999986
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEe---CCEEEEEec
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV---DNHLYVISL 276 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~g~l~i~~~ 276 (287)
.++|.+++|+|+.+..+..+.. .++.+++. .++|||++.
T Consensus 204 --~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 --GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp --TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred --CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 4699999999999999998732 57788874 488999985
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-24 Score=177.15 Aligned_cols=230 Identities=25% Similarity=0.397 Sum_probs=174.1
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-c-EEEeeecCCccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V-ENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~-~~~~~~~~~~~~~~ 77 (287)
.+.||+.+ .+++|++++ +++.+.+..+...+. ++.++..|+|+++. +|+++++ .++ . +.+.....+.+.+.
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCC
Confidence 44566666 788999999 688888888877777 88999999999886 4677777 556 5 77776666777789
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
+|+..++++|++||++.+. .. .........+.|||++|....++.+...+..||||+|+||++.||++++..++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 9999999999999998773 11 01111233468999998634444444458999999999999999999999999
Q ss_pred EEEEEecC--CCCccee--EEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 158 CRKYWLKG--ERKGKLE--TFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 158 l~~~~~~~--~~~~~~~--~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
|++|+.+. ..+.... .+....++.|+|+++|.+|+||++....
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--------------------------------- 233 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--------------------------------- 233 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------------------------------
Confidence 99999862 2222222 2333356899999999999999766541
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEeC---CEEEEEecCCC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSN 279 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~~~~ 279 (287)
+++|.+++|+|+.+..+..|.. .++++++.+ ++|||++...+
T Consensus 234 g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 234 GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCC
Confidence 2489999999999999998853 456666653 89999998874
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=145.70 Aligned_cols=224 Identities=16% Similarity=0.146 Sum_probs=168.9
Q ss_pred CCCCcEEEEec-CCeEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccc
Q 023085 2 DKNGVIYTATR-DGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~l~~~~~-~g~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~ 75 (287)
++||.+|++.+ .+.|-++| +|+.+.+.... ..|. +|.+++||..|+++.+.+|.|++ ++. ++.+.-. .....
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp-~~~a~ 147 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP-LEHAD 147 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcccceEEeecc-cccCC
Confidence 57899999874 56778899 89988887764 4677 99999999999999777999999 577 7776432 22223
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
...+..++|+.|+|||+... |.--|+||..+.++.+..+ ...|+||+..|||+ +|+++-.
T Consensus 148 ~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred CcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 35567889999999997322 2223888887777776443 45789999999998 8999888
Q ss_pred CCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 155 KFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
++-|.++|.... ..+.+... +......+-.|+.|++|++++.
T Consensus 209 gnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg--------------------------------- 252 (353)
T COG4257 209 GNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--------------------------------- 252 (353)
T ss_pred ccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccC---------------------------------
Confidence 888999986432 22222211 1112455777999999999987
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
.+.+.+|+|....-..+..|..+ ..+.++.+| .+++|......+.|++||
T Consensus 253 -~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred -CceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecC
Confidence 47999999988877788876543 456777776 599999999999999997
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-16 Score=150.49 Aligned_cols=232 Identities=19% Similarity=0.256 Sum_probs=164.0
Q ss_pred CCcEEEEe-cCCeEEEEE-CCceEEEEee---------------CCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI---------------DSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG- 62 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~~~~~~~~~---------------~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g- 62 (287)
+|.||+++ .+++|.+++ ++........ ...|. +++++++++ |||++.. +.|.+++ .++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~n~~Ir~id~~~~~ 657 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTENHALREIDFVNET 657 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence 57899998 678899999 7765543322 12477 999998774 8999865 5688888 667
Q ss_pred cEEEeee-c------CC-----ccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe
Q 023085 63 VENFLSY-V------NG-----SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 129 (287)
Q Consensus 63 ~~~~~~~-~------~~-----~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 129 (287)
++.+... . .+ ..++.|.++++++ +|.+||++.+ .+.|+++++.++.+..+
T Consensus 658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeEEEEECCCCeEEEE
Confidence 6666431 0 00 1256889999998 6899998644 45688888766655433
Q ss_pred ec---------------cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCccee-----------EEec-------
Q 023085 130 AD---------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLE-----------TFAE------- 176 (287)
Q Consensus 130 ~~---------------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~-----------~~~~------- 176 (287)
.. .+..|++++++|+++.|||++..+++|.++++++....... .+..
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 21 24578999999999999999999999999998643211000 0000
Q ss_pred cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECC---
Q 023085 177 NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--- 253 (287)
Q Consensus 177 ~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--- 253 (287)
.....|.++++|++|+|||+... .+.|.++++++..+..+...
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~----------------------------------N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSY----------------------------------NHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECC----------------------------------CCEEEEEECCCCeEEEEeccCCc
Confidence 01125899999999999999987 36899999887666554321
Q ss_pred ---CC----ccccceEEEEEe-CCEEEEEecCCCeEEEEeCC
Q 023085 254 ---TG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 254 ---~~----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
+| ..++.+.+++.+ +|+|||++..+++|.+++++
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 11 124567888886 78999999999999999874
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=116.17 Aligned_cols=221 Identities=9% Similarity=0.061 Sum_probs=157.7
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCceEEEEeeCC----ccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCC
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~----~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
+++||..|+.+....|.|++ +.++++|..+.. +-+ ...+|+.|+||++....---++| ..+ ++.+.. ..
T Consensus 111 ~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa-Pq- 187 (353)
T COG4257 111 VGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA-PQ- 187 (353)
T ss_pred ECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeeccccceecCcccCceeeecc-CC-
Confidence 46899999987666899999 678888865532 334 56789999999997542233677 445 555532 22
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc---ccceEEEccCCCEEE
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVV 149 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~l~ 149 (287)
-..|++|++.++|.+|++.. ..+.|.++|+.++.-..+..+.. ....+..++.++ +|
T Consensus 188 --G~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~w 247 (353)
T COG4257 188 --GGGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AW 247 (353)
T ss_pred --CCCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCCcccccccccccCccCc-EE
Confidence 24789999999999999632 24579999998775554443322 234466678886 99
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEe-ccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
+++.....+++|+..... ...+- ......|+.+.+|..|++|++...
T Consensus 248 ittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~----------------------------- 295 (353)
T COG4257 248 ITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEAD----------------------------- 295 (353)
T ss_pred EeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeeccc-----------------------------
Confidence 999999999999976432 22221 122236889999999999999887
Q ss_pred ccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEE--eCCEEEEEecCCCeEEEEe
Q 023085 229 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~ 285 (287)
.+.|.||||..-.+.+|..+.-. +..+.. ..|.||.+...-+.++++.
T Consensus 296 -----agai~rfdpeta~ftv~p~pr~n----~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 296 -----AGAIGRFDPETARFTVLPIPRPN----SGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred -----cCceeecCcccceEEEecCCCCC----CCceeccCCCCceeecccCcceeEEEE
Confidence 46899999999889988764421 223333 4699999999988888764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=108.64 Aligned_cols=183 Identities=24% Similarity=0.306 Sum_probs=125.2
Q ss_pred CeEECC-CCcEEEEeCC-CceEEEcc-CCcEEEeeecCCccccccceEEEc-CCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTK-EGHLIICDNA-NGLHKVSE-DGVENFLSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~-dg~l~v~~~~-~gi~~~~~-~g~~~~~~~~~~~~~~~~~~l~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+++.++ +|+||+++.. +.|+++++ ++....... ..|.+++++ ++|.+|+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~------~~~~G~~~~~~~g~l~v~~~------------------ 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL------PGPNGMAFDRPDGRLYVADS------------------ 59 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES------SSEEEEEEECTTSEEEEEET------------------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec------CCCceEEEEccCCEEEEEEc------------------
Confidence 677886 8899999865 46999994 443332221 237889999 7899999752
Q ss_pred CceEEEEeCCCCeeEEeec------cccccceEEEccCCCEEEEEeCCC--------CEEEEEEecCCCCcceeEEeccC
Q 023085 113 HGQLLKYDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~l~v~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
.++..+|+.+++++.+.. ....||.++++++|+ +|+++... ++|++++.+ .+.......
T Consensus 60 -~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~~- 132 (246)
T PF08450_consen 60 -GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVADG- 132 (246)
T ss_dssp -TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEEE-
T ss_pred -CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----CeEEEEecC-
Confidence 345666988888776543 356789999999998 99998754 569999865 222233222
Q ss_pred CCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--Cc-E--EEEE-E
Q 023085 179 PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GT-I--IRNL-V 251 (287)
Q Consensus 179 ~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~-~--~~~~-~ 251 (287)
-..|++|+++++|+ ||++... .+.|++++.+ +. . .+.+ .
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~----------------------------------~~~i~~~~~~~~~~~~~~~~~~~~ 178 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSF----------------------------------NGRIWRFDLDADGGELSNRRVFID 178 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETT----------------------------------TTEEEEEEEETTTCCEEEEEEEEE
T ss_pred cccccceEECCcchheeecccc----------------------------------cceeEEEeccccccceeeeeeEEE
Confidence 23699999999996 7777765 3578888753 43 1 2223 2
Q ss_pred CCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 252 DPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.+ ...+-+++.+ +|+||++.+.++.|.+++-
T Consensus 179 ~~~~--~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 179 FPGG--PGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp -SSS--SCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cCCC--CcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 2222 2357888887 7999999999999999974
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=96.93 Aligned_cols=88 Identities=52% Similarity=0.965 Sum_probs=72.0
Q ss_pred ceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 79 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 79 ~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
+++.++++ |.+||||++.+|....|..+++++...|.|++|||.+++++.+...+.+|||+++++|++.++|+++...+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 46889988 99999999999999999888888888899999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 023085 158 CRKYWLKGE 166 (287)
Q Consensus 158 l~~~~~~~~ 166 (287)
|.+|+++++
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999998753
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-11 Score=95.11 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=110.9
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
+..++-.+|++|+.|...+.- ++ . ......+.|+.+-+. ++++.+...+.-+||++|+.|.+.+|+.++.+
T Consensus 109 nR~NDgkvdP~Gryy~GtMad-~~------~-~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMAD-FG------D-DLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred cccccCccCCCCceeeeeecc-cc------c-cccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCc
Confidence 455677899999988753220 10 0 112234566666554 77777777778899999999999999999999
Q ss_pred CEEEEEE--ecCCCCcceeEEecc------CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 156 FRCRKYW--LKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 156 ~~l~~~~--~~~~~~~~~~~~~~~------~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
..+-.|| ..++.+.+.+..... .+-.|+|+++|.+|+|||+++.
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---------------------------- 231 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---------------------------- 231 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----------------------------
Confidence 9995555 445555555443321 2236999999999999999998
Q ss_pred cccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeC---CEEEEEec
Q 023085 228 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL 276 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~ 276 (287)
++.|+++||. |+.+..+..|. ..++++++.+ .-+|+++.
T Consensus 232 ------g~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 232 ------GGTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ------CcEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence 5799999986 99999998774 4588888865 34677665
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-11 Score=117.81 Aligned_cols=203 Identities=16% Similarity=0.155 Sum_probs=135.2
Q ss_pred ccccCeEECC-CCcEEEEeCC-CceEEEccCC-cEEEeee--cC--------CccccccceEEEcCCC-cEEEEcCCCCC
Q 023085 33 QTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG-VENFLSY--VN--------GSKLRFANDVVEASDG-SLYFTVSSSKY 98 (287)
Q Consensus 33 ~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g-~~~~~~~--~~--------~~~~~~~~~l~~d~~g-~l~v~~~~~~~ 98 (287)
.|. ++++|+ +|+|||++.. +.|.+++.+| ....... .. ...+..|.+|++++++ .|||+|..
T Consensus 569 ~P~-gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--- 644 (1057)
T PLN02919 569 FPG-KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--- 644 (1057)
T ss_pred CCc-eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC---
Confidence 455 789997 5789999876 4688888667 4332221 11 1235679999999876 48998643
Q ss_pred CCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----------------cccccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 99 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------------GFYFANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 99 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
...|.++|..++.++.+.. .+..|.+++++|+++.+||++..+++|+++
T Consensus 645 --------------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~ 710 (1057)
T PLN02919 645 --------------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEY 710 (1057)
T ss_pred --------------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEE
Confidence 3568888887676665432 134688999999777899999999999999
Q ss_pred EecCCCCccee------EEe-----ccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 162 WLKGERKGKLE------TFA-----ENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 162 ~~~~~~~~~~~------~~~-----~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
+..+....... ... ......|.+|+++++|+ ||++...
T Consensus 711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------------------------------ 760 (1057)
T PLN02919 711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------------------------------ 760 (1057)
T ss_pred ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------------------------------
Confidence 97543211100 000 00113588999999986 9999876
Q ss_pred cCCCceEEEEECCCCcEEEEEE--------------CCCC----ccccceEEEEEe-CCEEEEEecCCCeEEEEeCC
Q 023085 230 TLGGGAHLIHVAEDGTIIRNLV--------------DPTG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 230 ~~~~~~~v~~~~~~g~~~~~~~--------------~~~~----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|.++++++.....+. ..+| ..+..+.+++.+ +|+|||+...+++|.+++.+
T Consensus 761 ----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 761 ----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred ----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 357888886532221111 0111 123456777776 68999999999999999863
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-10 Score=98.54 Aligned_cols=229 Identities=18% Similarity=0.226 Sum_probs=141.6
Q ss_pred cEEEEecC----CeEEEEE----CCceEEEEe--eCCccccCeEECCCC-cEEEEeCC----CceEEEc--cC-C-cEEE
Q 023085 6 VIYTATRD----GWIKRLQ----DGTWVNWKF--IDSQTLVGLTSTKEG-HLIICDNA----NGLHKVS--ED-G-VENF 66 (287)
Q Consensus 6 ~l~~~~~~----g~i~~~~----~~~~~~~~~--~~~~~~~~i~~d~dg-~l~v~~~~----~gi~~~~--~~-g-~~~~ 66 (287)
++|+|+.. ++|+.|. +++++.... ...+|. .+++++++ .||++... .+|..+. ++ | ++.+
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps-~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPS-WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSEC-CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCc-eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 47899865 7898877 566654432 456777 89999988 57888653 2455554 44 7 6666
Q ss_pred eeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceE--EEEeCCCCeeEEee-------------
Q 023085 67 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYDPSSNITTLVA------------- 130 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~------------- 130 (287)
..... ....|..++++++++ ||+++.. .+.| +.++.. +.+....
T Consensus 80 ~~~~~--~g~~p~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 80 NSVPS--GGSSPCHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp EEEEE--SSSCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTT
T ss_pred eeecc--CCCCcEEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCC-cccceeeeecccCCCCCccc
Confidence 54321 124677899999885 6776543 3344 445443 5543321
Q ss_pred -ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC--CcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHH
Q 023085 131 -DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMK 206 (287)
Q Consensus 131 -~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~ 206 (287)
+....|+.+.++|+++.+|+++.+.++|+.|+++... +.....+.......|..++++++|+ +|+.+...
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s------ 213 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS------ 213 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT------
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC------
Confidence 1235678899999999999999999999999997543 3222222223445699999999985 77776541
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE--EEEEEC-CCC-ccccceEEEEEe--CCEEEEEecCCC
Q 023085 207 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI--IRNLVD-PTG-QLMSFVTSGLQV--DNHLYVISLTSN 279 (287)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~--~~~~~~-~~~-~~~~~~~~~~~~--~g~l~i~~~~~~ 279 (287)
..-.++.+++ ++.. +..+.. +.+ ...+.+..+... +..||+++...+
T Consensus 214 --------------------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 214 --------------------------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp --------------------------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred --------------------------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 1234455553 3432 222222 111 112356677665 578999999999
Q ss_pred eEEEEeCC
Q 023085 280 FIGKVQLS 287 (287)
Q Consensus 280 ~i~~~~~~ 287 (287)
.|.+|+++
T Consensus 268 sI~vf~~d 275 (345)
T PF10282_consen 268 SISVFDLD 275 (345)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99999973
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-10 Score=99.79 Aligned_cols=232 Identities=17% Similarity=0.236 Sum_probs=142.2
Q ss_pred CCCC-cEEEEec----CCeEEEEE---C-CceEEEEe---eCCccccCeEECCCCc-EEEEeCCCc-eEEEc--cCC-cE
Q 023085 2 DKNG-VIYTATR----DGWIKRLQ---D-GTWVNWKF---IDSQTLVGLTSTKEGH-LIICDNANG-LHKVS--EDG-VE 64 (287)
Q Consensus 2 d~~G-~l~~~~~----~g~i~~~~---~-~~~~~~~~---~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~--~~g-~~ 64 (287)
++++ .||+.+. .|.|..|. + ++.+.... ....|. .++++++++ ||++.+..| +..++ .+| +.
T Consensus 45 ~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~ 123 (345)
T PF10282_consen 45 SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG 123 (345)
T ss_dssp -TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEEEECTTSEEE
T ss_pred EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEEEccCCcccc
Confidence 4455 6888875 47888887 3 66655433 334566 799999995 788887644 54444 557 44
Q ss_pred EEeeec---------CCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEE--EeCCCCeeEE----
Q 023085 65 NFLSYV---------NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK--YDPSSNITTL---- 128 (287)
Q Consensus 65 ~~~~~~---------~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~---- 128 (287)
...... ..+....|+.+.++++|+ +|++|.+ ...|+. ++..++++..
T Consensus 124 ~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 124 EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS-TEEEEEEE
T ss_pred eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCceEEEeecc
Confidence 432111 012245788999999985 7887643 234554 4444333433
Q ss_pred eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC--CCCcceeEEecc---CC--CCCcceeeCCCCC-EEEEEecc
Q 023085 129 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAEN---LP--GAPDNINLAPDGT-FWIAIIKL 200 (287)
Q Consensus 129 ~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~--~~~~~~~~~~~~---~~--~~~~~i~~d~~G~-lwv~~~~~ 200 (287)
.......|..++|+|+++.+|+.+...+.|..|+++. ..+......... .. ..+.+|++++||+ ||++....
T Consensus 187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence 1244567889999999999999999999999999872 222222222111 11 1467899999996 77777551
Q ss_pred chhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE---EECCCCccccceEEEEE--eCCEEEEEe
Q 023085 201 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN---LVDPTGQLMSFVTSGLQ--VDNHLYVIS 275 (287)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~--~~g~l~i~~ 275 (287)
..-.++.+++++..+.. +.. .| ..+..+.+ ++..||+++
T Consensus 267 --------------------------------~sI~vf~~d~~~g~l~~~~~~~~-~G---~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 267 --------------------------------NSISVFDLDPATGTLTLVQTVPT-GG---KFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp --------------------------------TEEEEEEECTTTTTEEEEEEEEE-SS---SSEEEEEE-TTSSEEEEEE
T ss_pred --------------------------------CEEEEEEEecCCCceEEEEEEeC-CC---CCccEEEEeCCCCEEEEEe
Confidence 12355566555333332 232 23 24677777 468899999
Q ss_pred cCCCeEEEEeCC
Q 023085 276 LTSNFIGKVQLS 287 (287)
Q Consensus 276 ~~~~~i~~~~~~ 287 (287)
..++.|.+|++|
T Consensus 311 ~~s~~v~vf~~d 322 (345)
T PF10282_consen 311 QDSNTVSVFDID 322 (345)
T ss_dssp TTTTEEEEEEEE
T ss_pred cCCCeEEEEEEe
Confidence 999999999864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=111.45 Aligned_cols=215 Identities=17% Similarity=0.184 Sum_probs=129.4
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccc
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKL 75 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~ 75 (287)
+|..|.+|+||.+| +++|+ .++......++. .+...++.|..|+|||++. .|+++.++.| +.... ...+.
T Consensus 172 ~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTd-qGv~~~e~~G~~~sn~~---~~lp~ 246 (671)
T COG3292 172 FDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTD-QGVYLQEAEGWRASNWG---PMLPS 246 (671)
T ss_pred eeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEec-cceEEEchhhccccccC---CCCcc
Confidence 47899999999875 99999 566655544433 2322677899999999996 5999998555 33331 12334
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe----eccccccceEEEccCCCEEEEE
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
..+..+..|++|.+||.. .++++|+......+... ....+..+++..+.+|. ||+.
T Consensus 247 ~~I~ll~qD~qG~lWiGT-------------------enGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~ 306 (671)
T COG3292 247 GNILLLVQDAQGELWIGT-------------------ENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVG 306 (671)
T ss_pred hheeeeecccCCCEEEee-------------------cccceeEecCCCCccccccccCCccccccceeeccCCC-Eeee
Confidence 567778899999999952 34566665432332221 12234456677777786 7777
Q ss_pred eCCCCEEEEEEec------------CCCCcce---------e----------EEeccCCC---------C---CcceeeC
Q 023085 152 ESWKFRCRKYWLK------------GERKGKL---------E----------TFAENLPG---------A---PDNINLA 188 (287)
Q Consensus 152 ~~~~~~l~~~~~~------------~~~~~~~---------~----------~~~~~~~~---------~---~~~i~~d 188 (287)
.. .++++|... +...... . ...+...+ + ..-.++|
T Consensus 307 t~--~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d 384 (671)
T COG3292 307 TY--GGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLED 384 (671)
T ss_pred cc--CceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhc
Confidence 54 234444322 1100000 0 00000000 1 1223356
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV- 267 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 267 (287)
++|.+|+++.. .++.+++++. .-..+...+|...+.++.+.++
T Consensus 385 ~~g~lWlgs~q-----------------------------------~GLsrl~n~n-~~avlde~agl~ss~V~aived~ 428 (671)
T COG3292 385 SRGRLWLGSMQ-----------------------------------NGLSRLDNKN-EWAVLDEDAGLPSSEVSAIVEDP 428 (671)
T ss_pred cCCcEEEEecc-----------------------------------cchhhhccCC-cccccccccCCcccceeeeeecC
Confidence 67778888776 4788887544 2334455567777788888887
Q ss_pred CCEEEEEecCC
Q 023085 268 DNHLYVISLTS 278 (287)
Q Consensus 268 ~g~l~i~~~~~ 278 (287)
+++||||+.++
T Consensus 429 dnsLWIGTs~G 439 (671)
T COG3292 429 DNSLWIGTSGG 439 (671)
T ss_pred CCCEEEeccCC
Confidence 78899998754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-09 Score=94.18 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=136.2
Q ss_pred CCCC-cEEEEe-cCCeEEEEE---CCceEEEEe--eCCccccCeEECCCCc-EEEEeCC-CceEEEc--cCC-cEEEeee
Q 023085 2 DKNG-VIYTAT-RDGWIKRLQ---DGTWVNWKF--IDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~-~~g~i~~~~---~~~~~~~~~--~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~--~~g-~~~~~~~ 69 (287)
+++| .||+++ ..++|..|+ ++++..... ....|. .++++++|+ +|++... ..+..++ .+| .......
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 5677 478886 467887776 455543322 234666 899999996 7777654 3466665 345 3222111
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeEE------eeccccccceEEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTL------VADGFYFANGVAL 141 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~------~~~~~~~~~~i~~ 141 (287)
..+ ...|..++++++|. +|+++.. .+.|..++.++ +.+.. .......|..+++
T Consensus 122 ~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 122 IEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred ccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 111 23578888999885 5665432 45566666543 33321 1122456889999
Q ss_pred ccCCCEEEEEeCCCCEEEEEEecCC--CCcceeEEecc-----CCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchh
Q 023085 142 SRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN-----LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKL 213 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~~~~--~~~~~~~~~~~-----~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~ 213 (287)
+|+++.+|+++...+.|..|+++.. ++.....+... .+..+..++++++|+ +|++....
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~------------- 249 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA------------- 249 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-------------
Confidence 9999999999988899999998632 22111111100 011344688899986 77765431
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC-CCCccccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 214 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
..-.++.+++++..+..... +.+. .+..+.. ++.+||+++..++.|.+|+++
T Consensus 250 -------------------~~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 250 -------------------SLISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred -------------------CeEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 11244555566543333221 1221 2334444 467999999888999998763
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-10 Score=96.75 Aligned_cols=154 Identities=24% Similarity=0.297 Sum_probs=102.6
Q ss_pred CCCCCcEEEEec------------CC-eEEEEE----CCce---EEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-
Q 023085 1 MDKNGVIYTATR------------DG-WIKRLQ----DGTW---VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS- 59 (287)
Q Consensus 1 ~d~~G~l~~~~~------------~g-~i~~~~----~~~~---~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~- 59 (287)
+|.+|+||++.. .+ +|.++. +|.. +.+......|. +|++.++| |||+. ...|+++.
T Consensus 21 ~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G-lyV~~-~~~i~~~~d 97 (367)
T TIGR02604 21 FDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG-VYVAT-PPDILFLRD 97 (367)
T ss_pred ECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC-EEEeC-CCeEEEEeC
Confidence 478999999962 23 898987 3544 44555556778 99999999 99987 45788884
Q ss_pred cCC-------cEEEeeecCCc---cccccceEEEcCCCcEEEEcCCCCCCCc--ceeeeeeccCCCceEEEEeCCCCeeE
Q 023085 60 EDG-------VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYLPH--EYCLDILEGKPHGQLLKYDPSSNITT 127 (287)
Q Consensus 60 ~~g-------~~~~~~~~~~~---~~~~~~~l~~d~~g~l~v~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (287)
.++ .+.+....... ..+.+++++++++|.||+++........ ............+.++++++++++++
T Consensus 98 ~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e 177 (367)
T TIGR02604 98 KDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR 177 (367)
T ss_pred CCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE
Confidence 322 23343322221 2456889999999999998654210000 00000000112468999999988888
Q ss_pred EeeccccccceEEEccCCCEEEEEeCCCCEE
Q 023085 128 LVADGFYFANGVALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 128 ~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l 158 (287)
.+...+..|+|++++++|+ +|+++......
T Consensus 178 ~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~ 207 (367)
T TIGR02604 178 VVAHGFQNPYGHSVDSWGD-VFFCDNDDPPL 207 (367)
T ss_pred EEecCcCCCccceECCCCC-EEEEccCCCce
Confidence 8888899999999999987 78887644433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-09 Score=89.68 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=134.2
Q ss_pred cEEEEe-cCCeEEEEE---CCceEEEE--eeCCccccCeEECCCCc-EEEEeCC-CceEEEc--cCC-cEEEeeecCCcc
Q 023085 6 VIYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSYVNGSK 74 (287)
Q Consensus 6 ~l~~~~-~~g~i~~~~---~~~~~~~~--~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~--~~g-~~~~~~~~~~~~ 74 (287)
.+|+++ .+++|..|+ +++.+... .....+. .++++++++ ||++... .+|..++ .+| ++...... .
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~ 78 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---L 78 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec---C
Confidence 478886 678899888 35544332 2335667 899999996 7887643 5676666 355 54433211 1
Q ss_pred ccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeE---EeeccccccceEEEccCCCEEE
Q 023085 75 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITT---LVADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~---~~~~~~~~~~~i~~~~~~~~l~ 149 (287)
...|..++++++|+ +|+++.. .+.|..++.++ +.+. ........|++++++|+++.+|
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~-----------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYN-----------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcC-----------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence 23578899999986 5665322 34454454431 2221 1112345688999999999999
Q ss_pred EEeCCCCEEEEEEecCC-CCcc--eeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 150 VCESWKFRCRKYWLKGE-RKGK--LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++...+.|..|+++.. .+.. ...........|.+++++++|+ +|+++...
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~------------------------- 196 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN------------------------- 196 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-------------------------
Confidence 99998899999998642 2211 0111111234689999999986 67776531
Q ss_pred cccccCCCceEEEEECCC-CcE--EEEEEC-CCC-ccccceEEEEE--eCCEEEEEecCCCeEEEEeC
Q 023085 226 SQFITLGGGAHLIHVAED-GTI--IRNLVD-PTG-QLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~-g~~--~~~~~~-~~~-~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~ 286 (287)
..-.++.+++. +.. +..+.. +.. .....+..+.. ++..||+++...+.|.+|++
T Consensus 197 -------~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 197 -------SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred -------CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 11234444432 322 222221 111 01112333443 45679999888899999876
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-08 Score=82.54 Aligned_cols=234 Identities=15% Similarity=0.182 Sum_probs=144.9
Q ss_pred CCCC-cEEEEe---cCCeEEEEE----CCceEEEEee--CC-ccccCeEECCCCc-EEEEeCCCc-eEEEc--cCC-cEE
Q 023085 2 DKNG-VIYTAT---RDGWIKRLQ----DGTWVNWKFI--DS-QTLVGLTSTKEGH-LIICDNANG-LHKVS--EDG-VEN 65 (287)
Q Consensus 2 d~~G-~l~~~~---~~g~i~~~~----~~~~~~~~~~--~~-~~~~~i~~d~dg~-l~v~~~~~g-i~~~~--~~g-~~~ 65 (287)
++++ .||.+. ..|+|..|. +|+++..... .+ .|. -+++|++|+ |+++.+..| |.++. .+| +..
T Consensus 48 ~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 48 NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence 4555 688877 257887776 3777665432 23 334 789999996 677777655 33333 457 433
Q ss_pred Eee----ecCC----ccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee----cc
Q 023085 66 FLS----YVNG----SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----DG 132 (287)
Q Consensus 66 ~~~----~~~~----~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~ 132 (287)
... ...+ +....+....++++++ |++.|.+ .-.++.|+.+.|++.... .+
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccccccccccCC
Confidence 322 1111 1112356677888985 5555433 234555554457665432 34
Q ss_pred ccccceEEEccCCCEEEEEeCCCCEEEEEEecCC--CCcceeEEecc---CCC--CCcceeeCCCCCEEEEEeccchhHH
Q 023085 133 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN---LPG--APDNINLAPDGTFWIAIIKLDARRM 205 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~--~~~~~~~~~~~---~~~--~~~~i~~d~~G~lwv~~~~~~~~~~ 205 (287)
...|.-|+|.|+++..|+....++.|.++..+.. ++...+..... ..+ ....|.+.++|+...++....+
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--- 266 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--- 266 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC---
Confidence 5677889999999999999999999988887752 23333222211 111 2345778999986556655221
Q ss_pred HHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC--CCCccccceEEEEE--eCCEEEEEecCCCeE
Q 023085 206 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD--PTGQLMSFVTSGLQ--VDNHLYVISLTSNFI 281 (287)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i 281 (287)
--.++++++++..+..+.. ..|+ .+..+.+ .+..|++++..++.|
T Consensus 267 ----------------------------sI~~f~V~~~~g~L~~~~~~~teg~---~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 267 ----------------------------SIAVFSVDPDGGKLELVGITPTEGQ---FPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred ----------------------------eEEEEEEcCCCCEEEEEEEeccCCc---CCccceeCCCCCEEEEEccCCCcE
Confidence 2378899999777666532 2332 4556655 367899999999999
Q ss_pred EEEeCC
Q 023085 282 GKVQLS 287 (287)
Q Consensus 282 ~~~~~~ 287 (287)
.+|..|
T Consensus 316 ~vf~~d 321 (346)
T COG2706 316 TVFERD 321 (346)
T ss_pred EEEEEc
Confidence 998764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-08 Score=82.35 Aligned_cols=232 Identities=14% Similarity=0.116 Sum_probs=139.7
Q ss_pred CcEEEEec----CCeEEEEE-C---CceEEE--EeeCCccccCeEECCCC-cEEEEeCC---Cce--EEEc-cCC-cEEE
Q 023085 5 GVIYTATR----DGWIKRLQ-D---GTWVNW--KFIDSQTLVGLTSTKEG-HLIICDNA---NGL--HKVS-EDG-VENF 66 (287)
Q Consensus 5 G~l~~~~~----~g~i~~~~-~---~~~~~~--~~~~~~~~~~i~~d~dg-~l~v~~~~---~gi--~~~~-~~g-~~~~ 66 (287)
-.+|+||. ..+|++|+ + |+.... .....+|. -+++.+++ .||++... .|+ +.+| .+| ++.+
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~npt-yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPT-YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCc-eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 36899983 57898888 3 333222 23345676 78999999 68888544 344 5566 458 6666
Q ss_pred eeecCCccccccceEEEcCCCcEEE-EcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe----ec---------c
Q 023085 67 LSYVNGSKLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----AD---------G 132 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~---------~ 132 (287)
.... .+...|.-+++|.+|++.+ ++.+ .+.-.|+.+..+ |.+... .. .
T Consensus 82 n~~~--~~g~~p~yvsvd~~g~~vf~AnY~---------------~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 82 NRQT--LPGSPPCYVSVDEDGRFVFVANYH---------------SGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred eccc--cCCCCCeEEEECCCCCEEEEEEcc---------------CceEEEEEcccC-CccccceeeeecCCCCCCcccc
Confidence 4321 2223457899999997544 4433 111234444332 433222 11 1
Q ss_pred ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcc
Q 023085 133 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS 211 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~ 211 (287)
...++-.-++|++++|++++-+.++|..|+++.+.+.......-.....|+.|++.++|+ .|+.+.-
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL------------ 211 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL------------ 211 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc------------
Confidence 122456678999999999999999999999985544433222212334699999999997 4554432
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC----CCCc-cccceEEEEE--eCCEEEEEecCCCeEEEE
Q 023085 212 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD----PTGQ-LMSFVTSGLQ--VDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~----~~~~-~~~~~~~~~~--~~g~l~i~~~~~~~i~~~ 284 (287)
+...-++.+++....+..++. |++- ..+..+.+.. ++..||+.+..-++|.+|
T Consensus 212 --------------------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 212 --------------------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred --------------------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 223456677776444444322 2211 1123445544 356799999999999998
Q ss_pred eCC
Q 023085 285 QLS 287 (287)
Q Consensus 285 ~~~ 287 (287)
.+|
T Consensus 272 ~V~ 274 (346)
T COG2706 272 SVD 274 (346)
T ss_pred EEc
Confidence 765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-07 Score=79.80 Aligned_cols=224 Identities=15% Similarity=0.072 Sum_probs=131.4
Q ss_pred CCCCc-EEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC--cEEEeeecCC
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~ 72 (287)
+++|. +|+.. .++.|..|+ +++..........+. .++++++|+ ++++... ..+..++ .++ +..+. .
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~--- 113 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-V--- 113 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-C---
Confidence 45675 56554 667888888 455443222233455 778899996 5666433 4577777 444 22221 1
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEe
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
...+.+++++++|.++++... ....+..++..+++..........+..++++++++.++++.
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred --CCCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEc
Confidence 124678999999987774211 12245566776665433222233567788999999888887
Q ss_pred CCCCEEEEEEecCCCCcceeEEec-c---CCCCCcceeeCCCCCE-EEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAE-N---LPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
...+.+..|+....+......+.. . ....|.+++++++|+. |++...
T Consensus 176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~---------------------------- 227 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP---------------------------- 227 (300)
T ss_pred CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------------------------
Confidence 667889999986432111111110 0 1113567889999874 665543
Q ss_pred cccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 228 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.+..+|.+ ++....+.. +. .+..+.. ++..||++...++.|.++|+.
T Consensus 228 ------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 228 ------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred ------CCeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 2367777765 444444332 21 2344444 456788877677889998863
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-10 Score=97.84 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=90.1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-c-cccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F-YFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~l~v~~~ 153 (287)
..+.++..|.+|.+|++ ...++++|++.+++.-..... . ...+.+..+-+++ |||...
T Consensus 165 ~~V~aLv~D~~g~lWvg-------------------T~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd 224 (671)
T COG3292 165 TPVVALVFDANGRLWVG-------------------TPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD 224 (671)
T ss_pred ccceeeeeeccCcEEEe-------------------cCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec
Confidence 46778999999999995 234799999887775444322 2 2234455566666 899875
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
. .++..+..+..+.....+. ..+...-+..|.+|++|+++..
T Consensus 225 q--Gv~~~e~~G~~~sn~~~~l--p~~~I~ll~qD~qG~lWiGTen---------------------------------- 266 (671)
T COG3292 225 Q--GVYLQEAEGWRASNWGPML--PSGNILLLVQDAQGELWIGTEN---------------------------------- 266 (671)
T ss_pred c--ceEEEchhhccccccCCCC--cchheeeeecccCCCEEEeecc----------------------------------
Confidence 3 4777775542222211111 1112333556999999999997
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTS 278 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~ 278 (287)
++.|+....+.+.....+.+...+.+.++..+ +|.||+++..+
T Consensus 267 --Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~g 310 (671)
T COG3292 267 --GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGG 310 (671)
T ss_pred --cceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCc
Confidence 56665543333433333455556777788877 79999998763
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-09 Score=91.12 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=90.3
Q ss_pred CccccCeEECCCCcEEEEeCC-------------CceEEEc-c--CC-cEEEeeecCCccccccceEEEcCCCcEEEEcC
Q 023085 32 SQTLVGLTSTKEGHLIICDNA-------------NGLHKVS-E--DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVS 94 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~-------------~gi~~~~-~--~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~ 94 (287)
..|. .|++|++|+|||++.. ..|++++ . +| .........+ +..|++|++.++| |||++
T Consensus 14 ~~P~-~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--l~~p~Gi~~~~~G-lyV~~- 88 (367)
T TIGR02604 14 RNPI-AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--LSMVTGLAVAVGG-VYVAT- 88 (367)
T ss_pred CCCc-eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--CCCccceeEecCC-EEEeC-
Confidence 5678 9999999999999731 1477776 4 34 3222111112 4578999999888 99963
Q ss_pred CCCCCCcceeeeeeccCCCceEEEE-eCCC-----CeeEEeecc--------ccccceEEEccCCCEEEEEeCC------
Q 023085 95 SSKYLPHEYCLDILEGKPHGQLLKY-DPSS-----NITTLVADG--------FYFANGVALSRDEDYVVVCESW------ 154 (287)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-----~~~~~~~~~--------~~~~~~i~~~~~~~~l~v~~~~------ 154 (287)
...|+++ +.+. ++.+.+... ...+++++++|||. ||++...
T Consensus 89 ------------------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~ 149 (367)
T TIGR02604 89 ------------------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKV 149 (367)
T ss_pred ------------------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCcee
Confidence 2357767 3321 133333221 23377899999996 9987652
Q ss_pred -------------CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 -------------KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 -------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+++++.++. +.+.+... .-.|.++++|++|++|++...
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccC
Confidence 146888887653 34444432 225899999999999998764
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-07 Score=77.11 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=99.9
Q ss_pred CcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCCccccc
Q 023085 5 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 5 G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
+++|++. .++.|..++ +++..........+. +++++++|+ +|++... ..+..++ .++ ....... ...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----GPD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----CCC
Confidence 3567655 678899998 455444333344566 899999996 5666433 4577788 556 3332111 123
Q ss_pred cceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 78 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
+..++++++|. +|++.. ..+.|..+|.++++..........+.+++++|+++.++++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 75 PELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred ccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence 55678888886 555421 245788888876553322222335688999999997777765444
Q ss_pred EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEe
Q 023085 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 198 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~ 198 (287)
.+..++..+.+. .... .....|..++++++|+ ||+++.
T Consensus 138 ~~~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 138 MAHFIDTKTYEI--VDNV--LVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred eEEEEeCCCCeE--EEEE--EcCCCccEEEECCCCCEEEEEcC
Confidence 566667543211 1111 1223577788999987 445543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-08 Score=83.41 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=115.2
Q ss_pred CeEECCCCcEEEEeCCC-------------ceEEEc-cCC--cEEEeeecC-CccccccceEEEcCC------CcEEEEc
Q 023085 37 GLTSTKEGHLIICDNAN-------------GLHKVS-EDG--VENFLSYVN-GSKLRFANDVVEASD------GSLYFTV 93 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~-------------gi~~~~-~~g--~~~~~~~~~-~~~~~~~~~l~~d~~------g~l~v~~ 93 (287)
++.+|+.|+|||.+.+. .|+.+| .++ +..+.-... ..+....+++++|.. +.+|++|
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 78899999999998552 388999 665 444322111 122456788999962 4689987
Q ss_pred CCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-----------------c---ccceEEEcc---CCCEEEE
Q 023085 94 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-----------------Y---FANGVALSR---DEDYVVV 150 (287)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~---~~~~i~~~~---~~~~l~v 150 (287)
.+ ..+|..+|..+++..++.... . ...|++.+| +++.||+
T Consensus 85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 55 347778888777655543221 1 124566654 7889999
Q ss_pred EeCCCCEEEEEEec---CCCCcc-------eeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHh
Q 023085 151 CESWKFRCRKYWLK---GERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 220 (287)
Q Consensus 151 ~~~~~~~l~~~~~~---~~~~~~-------~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (287)
....+.++++...+ ...... .+.+. ...+..+++++|++|+||++...
T Consensus 148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~--------------------- 205 (287)
T PF03022_consen 148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVE--------------------- 205 (287)
T ss_dssp EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECC---------------------
T ss_pred EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCC---------------------
Confidence 99888889998854 221111 11221 22234688999999999999988
Q ss_pred CCccccccccCCCceEEEEECCCC-----cEEEEEECCCCccccceEEEEEeC---CEEEEEec
Q 023085 221 YPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL 276 (287)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~ 276 (287)
.++|.+.++++ +.......+. .+..+.++..+. |.||+.+.
T Consensus 206 -------------~~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 206 -------------QNAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-
T ss_pred -------------CCeEEEEeCCCCcCccchheeEEcCc--eeeccceeeeccccCceEEEEEC
Confidence 46999999988 4444445433 256778888866 99999874
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=86.37 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=95.4
Q ss_pred CCCCCcEEEEecC------------CeEEEEE-CCceEEEEee-CCccccCeEECCCC-cEEEEeCC-CceEEEc-c--C
Q 023085 1 MDKNGVIYTATRD------------GWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEG-HLIICDNA-NGLHKVS-E--D 61 (287)
Q Consensus 1 ~d~~G~l~~~~~~------------g~i~~~~-~~~~~~~~~~-~~~~~~~i~~d~dg-~l~v~~~~-~gi~~~~-~--~ 61 (287)
+|++|.+||++.. |.|+|++ .++.++.... ...|+ +|+++||| .+|++++. ..|++++ . +
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4789999999844 5699999 6666665544 55778 99999999 79999866 5688887 3 2
Q ss_pred C-c-EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceE
Q 023085 62 G-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 139 (287)
Q Consensus 62 g-~-~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i 139 (287)
+ . ..-...........|.++++|.+|++|++-.. ..+.|.+++|+...+..+.-+...+..+
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEEEECCCCCCccc
Confidence 3 1 11101111123457899999999999973111 1248999999944455554454677777
Q ss_pred EE-ccCCCEEEEEeCCC
Q 023085 140 AL-SRDEDYVVVCESWK 155 (287)
Q Consensus 140 ~~-~~~~~~l~v~~~~~ 155 (287)
+| .++.++|||+....
T Consensus 261 ~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 261 AFGGPDLNTLYITSARS 277 (307)
T ss_pred eEeCCCcCEEEEEecCC
Confidence 76 46788999998755
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-06 Score=75.35 Aligned_cols=231 Identities=15% Similarity=0.150 Sum_probs=144.4
Q ss_pred CCCC-cEEEEecCC-eEEEEECC--ceEEEEeeC-CccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCC
Q 023085 2 DKNG-VIYTATRDG-WIKRLQDG--TWVNWKFID-SQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G-~l~~~~~~g-~i~~~~~~--~~~~~~~~~-~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
+++| .+|+..... .+...+.. ..+...... ..|. ++++.+++. +|+.+.. +.+..++ ..- ..... ..+
T Consensus 39 ~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG 115 (381)
T COG3391 39 NPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--PVG 115 (381)
T ss_pred cCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe--eec
Confidence 3455 566665322 23333321 122222222 4567 889998885 9999755 5688887 333 22211 111
Q ss_pred ccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEE
Q 023085 73 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
..|..+++++++ .+|+++.. ...+.+..+|..++++.........|.+++++|+|+.+|++
T Consensus 116 ---~~P~~~~~~~~~~~vYV~n~~---------------~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~ 177 (381)
T COG3391 116 ---LGPVGLAVDPDGKYVYVANAG---------------NGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVT 177 (381)
T ss_pred ---cCCceEEECCCCCEEEEEecc---------------cCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEE
Confidence 278899999987 89998753 12568999998877766554444467999999999999999
Q ss_pred eCCCCEEEEEEecCCCCcceeEE--eccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 152 ESWKFRCRKYWLKGERKGKLETF--AENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
+...+.|..++.+...... ... .-.....|.+++++++|+ +|++....
T Consensus 178 ~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---------------------------- 228 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---------------------------- 228 (381)
T ss_pred ecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC----------------------------
Confidence 9888999999965432221 110 012334699999999997 88888751
Q ss_pred ccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
..+.+.+++...........+.+...........++..+|+.....+.+.++|.
T Consensus 229 ----~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 229 ----GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ----CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 124788888765544443222232112223333346778888777777777764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-07 Score=79.83 Aligned_cols=262 Identities=13% Similarity=0.135 Sum_probs=131.6
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC--cEEEeeec--C
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYV--N 71 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g--~~~~~~~~--~ 71 (287)
.+|| .+|+++.+|.|..+| +++.......+..|. ++++++||+ ++++.+. ..+..+| ++. +..+.... .
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~ 123 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV 123 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc
Confidence 4677 599999899999999 666655556677788 999999997 5666543 5688888 554 44443211 1
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEeeccccccceEEEccCCCEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~ 149 (287)
......+.++...+....|+.. -...+.++.+|..... .........++++..++|++++++
T Consensus 124 ~~~~~Rv~aIv~s~~~~~fVv~----------------lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 124 DGPESRVAAIVASPGRPEFVVN----------------LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TTS---EEEEEE-SSSSEEEEE----------------ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred cccCCCceeEEecCCCCEEEEE----------------EccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 1122345567666666666632 1234678888854332 112233446788999999999999
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEecc--CC-CCCcceeeCCC-CCEEEEEecc---------c-hhHHHHh-----hc
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAEN--LP-GAPDNINLAPD-GTFWIAIIKL---------D-ARRMKIL-----NS 210 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~d~~-G~lwv~~~~~---------~-~~~~~~~-----~~ 210 (287)
++....+.|..+|.+..+ ....... .+ ..+..-..++. |-+|...... . ..+++.. ..
T Consensus 188 va~~~sn~i~viD~~~~k---~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGK---LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEGGGTEEEEEETTTTE---EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred ecccccceeEEEeeccce---EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 987777888888865321 1111100 00 01111112332 3444433211 0 0111110 00
Q ss_pred chh--HHHHHHhCCcccccccc---CCCceEEEEECCCCc-EEEEEECCCCccccceEEE--EEeCCEEEEEecCCC-eE
Q 023085 211 SKL--IKHVLAAYPKLFSQFIT---LGGGAHLIHVAEDGT-IIRNLVDPTGQLMSFVTSG--LQVDNHLYVISLTSN-FI 281 (287)
Q Consensus 211 ~~~--~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~--~~~~g~l~i~~~~~~-~i 281 (287)
-+. .-..+..+|++.+.|.. .+....|..+|.+.. ....+....+. .+..+ ..++..+|++....+ .|
T Consensus 265 I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~---~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 265 IPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK---RVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC---cEeccEECCCCCEEEEEEecCCCEE
Confidence 000 00123556666665544 444567777776542 33333321121 13333 334688999999988 99
Q ss_pred EEEeC
Q 023085 282 GKVQL 286 (287)
Q Consensus 282 ~~~~~ 286 (287)
.++|-
T Consensus 342 ~v~D~ 346 (369)
T PF02239_consen 342 VVYDA 346 (369)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99984
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-05 Score=68.78 Aligned_cols=245 Identities=10% Similarity=-0.012 Sum_probs=132.8
Q ss_pred CcEEEEecC-----CeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeC---------C-CceEEEc-cCC--c
Q 023085 5 GVIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN---------A-NGLHKVS-EDG--V 63 (287)
Q Consensus 5 G~l~~~~~~-----g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~---------~-~gi~~~~-~~g--~ 63 (287)
.++|+.+.. ++|+.+| +++..........|. ++ +.+|| .||++.. . ..|..+| .+. .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 368887754 7899999 556555556667788 76 99999 5899976 3 3578888 565 3
Q ss_pred EEEeeecC--CccccccceEEEcCCCc-EEEEcCCCC-----CCCcce--eeeeec---------cCCCceEEEEeCCC-
Q 023085 64 ENFLSYVN--GSKLRFANDVVEASDGS-LYFTVSSSK-----YLPHEY--CLDILE---------GKPHGQLLKYDPSS- 123 (287)
Q Consensus 64 ~~~~~~~~--~~~~~~~~~l~~d~~g~-l~v~~~~~~-----~~~~~~--~~~~~~---------~~~~~~v~~~~~~~- 123 (287)
..+..... -.....+..++++++|+ +|+++..-+ .+.... ..++.. ......+.+.|...
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLA 170 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceE
Confidence 33321100 01134566889999985 888764411 111111 111100 00011112222110
Q ss_pred -------CeeEEeeccc---------cccceEEEcc-CCCEEEEEeCCCCEEEEEEecCCCCcceeEEe--cc---C-CC
Q 023085 124 -------NITTLVADGF---------YFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFA--EN---L-PG 180 (287)
Q Consensus 124 -------~~~~~~~~~~---------~~~~~i~~~~-~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~--~~---~-~~ 180 (287)
|+.......+ ..| .+.+ +++.+|++.. +.|..+|+.+........+. .. . .-
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccccccc
Confidence 1111000001 112 2344 7888888865 78999997543222122111 11 1 11
Q ss_pred CCcc---eeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCC
Q 023085 181 APDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTG 255 (287)
Q Consensus 181 ~~~~---i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~ 255 (287)
.|.+ ++++++| ++||+..+.. ...+..+.+.|..+|.. ++.+..+.. |
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~-------------------------~~thk~~~~~V~ViD~~t~kvi~~i~v--G 298 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRA-------------------------KWTHKTASRFLFVVDAKTGKRLRKIEL--G 298 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCc-------------------------cccccCCCCEEEEEECCCCeEEEEEeC--C
Confidence 4555 9999875 7999764410 00012223578999976 556666664 3
Q ss_pred ccccceEEEEE--eCC-EEEEEecCCCeEEEEeC
Q 023085 256 QLMSFVTSGLQ--VDN-HLYVISLTSNFIGKVQL 286 (287)
Q Consensus 256 ~~~~~~~~~~~--~~g-~l~i~~~~~~~i~~~~~ 286 (287)
. .+..+.+ ++. .||+++-.++.|.++|.
T Consensus 299 ~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 299 H---EIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred C---ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 2 3444444 456 78888878889999986
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-05 Score=77.23 Aligned_cols=174 Identities=17% Similarity=0.241 Sum_probs=111.5
Q ss_pred CCcEEEEe-cCCeEEEEE-------CCceEEEEe----------eC-----------CccccCeEECCCCcEEEEeCCCc
Q 023085 4 NGVIYTAT-RDGWIKRLQ-------DGTWVNWKF----------ID-----------SQTLVGLTSTKEGHLIICDNANG 54 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-------~~~~~~~~~----------~~-----------~~~~~~i~~d~dg~l~v~~~~~g 54 (287)
+|.||+++ ....|+|+. .+.++.... .+ ..|- ||++|++|.||+++ +..
T Consensus 418 dgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~lYfaD-~t~ 495 (1899)
T KOG4659|consen 418 DGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGNLYFAD-GTR 495 (1899)
T ss_pred CceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCcEEEec-ccE
Confidence 68999987 445788876 233444321 11 1466 99999999999998 457
Q ss_pred eEEEccCC-cEEEeeecC---------------CccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEE
Q 023085 55 LHKVSEDG-VENFLSYVN---------------GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 117 (287)
Q Consensus 55 i~~~~~~g-~~~~~~~~~---------------~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 117 (287)
|-.+|.+| ++.+..... ...+.-|+.+++++ ++.|+|-| .+-|+
T Consensus 496 IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld-------------------~nvvl 556 (1899)
T KOG4659|consen 496 IRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD-------------------TNVVL 556 (1899)
T ss_pred EEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee-------------------cceEE
Confidence 88888888 777653221 12345789999997 78999964 34577
Q ss_pred EEeCCCCeeEEeecc---------------------ccccceEEEccCCCEEEEEeCCCCEEEEEEe---cCC------C
Q 023085 118 KYDPSSNITTLVADG---------------------FYFANGVALSRDEDYVVVCESWKFRCRKYWL---KGE------R 167 (287)
Q Consensus 118 ~~~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~---~~~------~ 167 (287)
++++. ..+..+... +..+..|+++++|. |||+++.+.+|-+... ++. .
T Consensus 557 rit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~tdg~i~ilaGa 634 (1899)
T KOG4659|consen 557 RITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLSTDGTISILAGA 634 (1899)
T ss_pred EEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEeccCceEEEecCC
Confidence 77765 444433210 12356789999996 9999998876655442 211 0
Q ss_pred Ccce--------eEE------ec-cCCCCCcceeeCCCCCEEEEEecc
Q 023085 168 KGKL--------ETF------AE-NLPGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 168 ~~~~--------~~~------~~-~~~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
.+.+ ..| +. ..-..|..+|+.|||+++++...+
T Consensus 635 ~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 635 KSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred CCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence 0100 011 00 011247889999999999999763
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-05 Score=62.43 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=127.9
Q ss_pred CCC-cEEEEecCCeEEEEE--CC-ceEEEEeeCCccccCeEECCCCcEEEEeC-CCceEEEc-cCC--cEEEeeecCCcc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~-~~~~~~~~~~~~~~~i~~d~dg~l~v~~~-~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
+++ .|++++.+|.|..|+ ++ ....+........ .+.+.++++++++.. .+.+..++ .++ ...+. ..
T Consensus 61 ~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~ 134 (289)
T cd00200 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-----GH 134 (289)
T ss_pred CCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----cC
Confidence 345 677777888999998 32 2233332222344 788888888777765 45577777 545 33332 11
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+..+.+.+++.++++. ...+.|..+|..+++.. .+.........+.++++++.++++..
T Consensus 135 ~~~i~~~~~~~~~~~l~~~-----------------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASS-----------------SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred CCcEEEEEEcCcCCEEEEE-----------------cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC
Confidence 2356788888887776642 12456777887644432 22222335677889999987777765
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
.+.+..|+....+. ...+. .....+..+++++++.+.++...
T Consensus 198 -~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~~---------------------------------- 239 (289)
T cd00200 198 -DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGSE---------------------------------- 239 (289)
T ss_pred -CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEcC----------------------------------
Confidence 67889998753211 11111 11224667888888877777763
Q ss_pred ceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 234 GAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
.+.+..++.+ ++....+.... ..+..+... ++.++++....+.|.++
T Consensus 240 ~~~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 240 DGTIRVWDLRTGECVQTLSGHT----NSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CCcEEEEEcCCceeEEEccccC----CcEEEEEECCCCCEEEEecCCCeEEec
Confidence 2467777754 55555555222 246666665 34444444455566654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-05 Score=68.30 Aligned_cols=210 Identities=13% Similarity=0.125 Sum_probs=134.7
Q ss_pred EEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeCCCc-eEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-
Q 023085 16 IKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANG-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS- 88 (287)
Q Consensus 16 i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~~g-i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~- 88 (287)
+..++ +..+.........|. ++++.++| .++++..... +..++ ... .+... ......|.++++.+.+.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~----~~g~~~p~~i~v~~~~~~ 87 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPG-GVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL----SVGGVYPAGVAVNPAGNK 87 (381)
T ss_pred eEEEeecccEEEEEeecCCCCc-eeEEcCccCEEEEEeecCceeeecccccceeeeec----cCCCccccceeeCCCCCe
Confidence 44444 333333334444677 89999999 7899875544 44443 211 22211 11115678889998876
Q ss_pred EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC--CCCEEEEEEecCC
Q 023085 89 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGE 166 (287)
Q Consensus 89 l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~--~~~~l~~~~~~~~ 166 (287)
+|+.+. ....+..+|..+..+.........|.+++++++++.+|+++. .++.+..+|....
T Consensus 88 vyv~~~-----------------~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 88 VYVTTG-----------------DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred EEEecC-----------------CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 899642 245788888655544443333458999999999999999998 4688999986543
Q ss_pred CCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc
Q 023085 167 RKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT 245 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 245 (287)
+.... .+. ...|.+++++++|+ +|++... .+.|..++.++.
T Consensus 151 ~~~~~-~~v---G~~P~~~a~~p~g~~vyv~~~~----------------------------------~~~v~vi~~~~~ 192 (381)
T COG3391 151 KVTAT-IPV---GNTPTGVAVDPDGNKVYVTNSD----------------------------------DNTVSVIDTSGN 192 (381)
T ss_pred eEEEE-Eec---CCCcceEEECCCCCeEEEEecC----------------------------------CCeEEEEeCCCc
Confidence 32222 222 12578999999997 9999954 358888988777
Q ss_pred EEEEEECCC--CccccceEEEEE--eCCEEEEEecCC--CeEEEEeC
Q 023085 246 IIRNLVDPT--GQLMSFVTSGLQ--VDNHLYVISLTS--NFIGKVQL 286 (287)
Q Consensus 246 ~~~~~~~~~--~~~~~~~~~~~~--~~g~l~i~~~~~--~~i~~~~~ 286 (287)
.+.. ..+. -.....+..+.. ++.++|+....+ +.+.++|.
T Consensus 193 ~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 193 SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 6664 2211 112234555555 457799998887 58888775
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-05 Score=69.52 Aligned_cols=149 Identities=19% Similarity=0.282 Sum_probs=85.3
Q ss_pred CCCCcEEEEecCCeEEEEE-CCce-EEEEeeC-------CccccCeEECCC----CcEEEEeCC---------CceEEEc
Q 023085 2 DKNGVIYTATRDGWIKRLQ-DGTW-VNWKFID-------SQTLVGLTSTKE----GHLIICDNA---------NGLHKVS 59 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~~~~-~~~~~~~-------~~~~~~i~~d~d----g~l~v~~~~---------~gi~~~~ 59 (287)
.+||+|+++...|+|.+++ ++.. ..+.... .... +++++++ +.||++... ..|.++.
T Consensus 10 ~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~ 88 (331)
T PF07995_consen 10 LPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFT 88 (331)
T ss_dssp ETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEE
T ss_pred eCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCCcceeeEEEe
Confidence 4689999999999999999 6665 3332221 1224 7899984 889998542 1466665
Q ss_pred -cCC------cEEEeeecCC--ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC------
Q 023085 60 -EDG------VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN------ 124 (287)
Q Consensus 60 -~~g------~~~~~~~~~~--~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 124 (287)
..+ .+.+...... ...+....|+++++|.||++..+.-. .... + ......+.|+|++++..
T Consensus 89 ~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~-~-~~~~~~G~ilri~~dG~~p~dnP 164 (331)
T PF07995_consen 89 LSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNA-Q-DPNSLRGKILRIDPDGSIPADNP 164 (331)
T ss_dssp EETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGG-C-STTSSTTEEEEEETTSSB-TTST
T ss_pred ccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccc-c-ccccccceEEEecccCcCCCCCc
Confidence 222 1222221111 22345567999999999997433111 0000 0 01223578999997632
Q ss_pred -------eeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 125 -------ITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 125 -------~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..+.++..+..|.+++|+|....||+++...
T Consensus 165 ~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 165 FVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred cccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 1234456678899999999844599998644
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-05 Score=64.23 Aligned_cols=192 Identities=16% Similarity=0.211 Sum_probs=106.5
Q ss_pred CeEECCC-CcEEEEeCC-CceEEEccCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~d-g~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
||+++++ ++||+.... ..|+.++.+| ++.+. . .+ ...+.+|+.-.++.+.+++ ..
T Consensus 26 GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-l-~g--~~D~EgI~y~g~~~~vl~~-----------------Er 84 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-L-DG--FGDYEGITYLGNGRYVLSE-----------------ER 84 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEE-----------------TT
T ss_pred ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-C-CC--CCCceeEEEECCCEEEEEE-----------------cC
Confidence 9999987 568877544 4588888667 44442 1 11 4567889998888777753 22
Q ss_pred CceEEEEeC--CCCee-----EEeeccc-----cccceEEEccCCCEEEEEeCCCC-EEEEEEe--cCCCCcce--eEEe
Q 023085 113 HGQLLKYDP--SSNIT-----TLVADGF-----YFANGVALSRDEDYVVVCESWKF-RCRKYWL--KGERKGKL--ETFA 175 (287)
Q Consensus 113 ~~~v~~~~~--~~~~~-----~~~~~~~-----~~~~~i~~~~~~~~l~v~~~~~~-~l~~~~~--~~~~~~~~--~~~~ 175 (287)
.+.|+.++. .+..+ ..+.-.. ....|+++++.++.||++..... +|+.++. ........ ..+.
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 455655543 22211 1111111 22478999999888888875443 4666653 11110000 0000
Q ss_pred --ccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC
Q 023085 176 --ENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD 252 (287)
Q Consensus 176 --~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~ 252 (287)
...-..+.++++|+ .|+||+-+... ..|..+|.+|+.+..+..
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es----------------------------------~~l~~~d~~G~~~~~~~L 210 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDES----------------------------------RLLLELDRQGRVVSSLSL 210 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTT----------------------------------TEEEEE-TT--EEEEEE-
T ss_pred cccceeccccceEEcCCCCeEEEEECCC----------------------------------CeEEEECCCCCEEEEEEe
Confidence 00112478899987 57899998772 489999999999988877
Q ss_pred CCC-----ccccceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 253 PTG-----QLMSFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 253 ~~~-----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
..| ..+..+-+++++ +|+|||.+ .-|..++|
T Consensus 211 ~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 211 DRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 554 234578899997 79999998 45666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-05 Score=64.47 Aligned_cols=178 Identities=12% Similarity=0.152 Sum_probs=95.5
Q ss_pred CCcEEEEe-cCCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEc-c-CC--cEE--Eee---e
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-E-DG--VEN--FLS---Y 69 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~-~g--~~~--~~~---~ 69 (287)
++.||+.+ ..+.|+.++ +|+....... ...+. +|+.-.+|++.+++.. +.++.+. . ++ ... +.. .
T Consensus 33 ~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~ 111 (248)
T PF06977_consen 33 TGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG 111 (248)
T ss_dssp TTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE--
T ss_pred CCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc
Confidence 36788766 678899999 7766544332 24567 8999888888888754 4566666 2 22 211 111 1
Q ss_pred cCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeC--CCCeeEEee--------ccccccce
Q 023085 70 VNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA--------DGFYFANG 138 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~--------~~~~~~~~ 138 (287)
..........+++.|+. ++++++. ......|+.++. ....+.... .....+.+
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~k----------------E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAK----------------ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEE----------------ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccCCCcceEEEEEcCCCCEEEEEe----------------CCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 11111234678999986 5777752 112345676654 212222111 12345789
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC------CCCcceeeCCCCCEEEEEec
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~d~~G~lwv~~~~ 199 (287)
++++|....||+.+..+.+|..+|.++...... ....... .-|.||++|++|+|||++.+
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred eEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence 999999888999998899999999655321111 1111100 14899999999999999987
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-05 Score=69.25 Aligned_cols=216 Identities=12% Similarity=0.129 Sum_probs=114.4
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccc--ccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKL--RFA 78 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~--~~~ 78 (287)
++.+|+++.+|.++.+| +|+............+...+. ++.+++.+....++.+| .+|...+......... ...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 56899999899999999 666543332222222122333 67899887655699999 7782222111111100 000
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccc---------eEEEcc--CCCE
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---------GVALSR--DEDY 147 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~i~~~~--~~~~ 147 (287)
..-++. ++.+++. ...+.++.+++++|+...... ...+. .+..+| .++.
T Consensus 199 ~sP~v~-~~~v~~~------------------~~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 199 SAPATA-FGGAIVG------------------GDNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCEEE-CCEEEEE------------------cCCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCE
Confidence 111222 3566664 234678888877776433211 00000 000111 2446
Q ss_pred EEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
+|+... .+.++++|...++. .+..... .+..++. .+++||+++..
T Consensus 259 vy~~~~-~g~l~ald~~tG~~----~W~~~~~-~~~~~~~-~~~~vy~~~~~---------------------------- 303 (394)
T PRK11138 259 VYALAY-NGNLVALDLRSGQI----VWKREYG-SVNDFAV-DGGRIYLVDQN---------------------------- 303 (394)
T ss_pred EEEEEc-CCeEEEEECCCCCE----EEeecCC-CccCcEE-ECCEEEEEcCC----------------------------
Confidence 888764 57899999764321 1211111 1223343 36789998865
Q ss_pred cccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 228 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.++.++++ |+.++......+. ..+.....+++||+++..+ .|..+|.
T Consensus 304 -------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G-~l~~ld~ 352 (394)
T PRK11138 304 -------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG-YLHWINR 352 (394)
T ss_pred -------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC-EEEEEEC
Confidence 588888864 6666654432221 1233334578888887553 5655553
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=77.00 Aligned_cols=208 Identities=19% Similarity=0.230 Sum_probs=117.2
Q ss_pred ccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeecCCccccccceEEEcC-CCcEEEEcCCCCC-----CCcce--
Q 023085 33 QTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKY-----LPHEY-- 103 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~-----~~~~~-- 103 (287)
.|+ .++..+||+|+|++. +-|-|+.++| +..+....... ..+-+-||+++ +|+||++|...+. .+...
T Consensus 366 aPv-ala~a~DGSl~VGDf-NyIRRI~~dg~v~tIl~L~~t~-~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~ 442 (1899)
T KOG4659|consen 366 APV-ALAYAPDGSLIVGDF-NYIRRISQDGQVSTILTLGLTD-TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDS 442 (1899)
T ss_pred cee-eEEEcCCCcEEEccc-hheeeecCCCceEEEEEecCCC-ccceeEEEecCcCceEEecCCCcceEEEeccCCcccc
Confidence 356 788999999999985 4688888888 66665433221 22345689998 7999998755220 00000
Q ss_pred --eeeeeccCCCceEEEEeCC--CCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC------CC-ccee
Q 023085 104 --CLDILEGKPHGQLLKYDPS--SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE------RK-GKLE 172 (287)
Q Consensus 104 --~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~------~~-~~~~ 172 (287)
+.|.+.+++. .....|.. .|... ....+.+|.||+++..|. ||+++ +..|.++|.++- .. .+.+
T Consensus 443 ~~N~evvaG~Ge-~Clp~desCGDGalA-~dA~L~~PkGIa~dk~g~-lYfaD--~t~IR~iD~~giIstlig~~~~~~~ 517 (1899)
T KOG4659|consen 443 RNNYEVVAGDGE-VCLPADESCGDGALA-QDAQLIFPKGIAFDKMGN-LYFAD--GTRIRVIDTTGIISTLIGTTPDQHP 517 (1899)
T ss_pred ccCeeEEeccCc-CccccccccCcchhc-ccceeccCCceeEccCCc-EEEec--ccEEEEeccCceEEEeccCCCCccC
Confidence 0011111110 01111110 01000 012356799999999886 99997 456888885431 00 0000
Q ss_pred EE-e-------ccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC
Q 023085 173 TF-A-------ENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 243 (287)
Q Consensus 173 ~~-~-------~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (287)
+. + .-.-.+|..+++|| ++.|+|-... -|.+++++
T Consensus 518 p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------------------------------------vvlrit~~ 561 (1899)
T KOG4659|consen 518 PRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------------------------------------VVLRITVV 561 (1899)
T ss_pred ccccccccchhheeeecccceeecCCCCeEEEeecc------------------------------------eEEEEccC
Confidence 00 0 00113689999998 8899998876 67788877
Q ss_pred CcEEEEEECCCCcccc----------------ceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 244 GTIIRNLVDPTGQLMS----------------FVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 244 g~~~~~~~~~~~~~~~----------------~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
+++......|--.... ....+.+. +|.|||+...+.+|-++
T Consensus 562 ~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrv 619 (1899)
T KOG4659|consen 562 HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRV 619 (1899)
T ss_pred ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhhe
Confidence 7665332211110010 12455554 79999998887766544
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=73.94 Aligned_cols=216 Identities=17% Similarity=0.167 Sum_probs=138.8
Q ss_pred EEEEecCCeEEEEE-CCce------E-EEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcc
Q 023085 7 IYTATRDGWIKRLQ-DGTW------V-NWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 7 l~~~~~~g~i~~~~-~~~~------~-~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
|.++ +++.|.++. ++.. . .+..+...++ +|.+|= +..+|.++.. +.|-+-.-.| -+.+.. ..
T Consensus 993 LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----~~ 1066 (1289)
T KOG1214|consen 993 LLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----SG 1066 (1289)
T ss_pred EEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec----cc
Confidence 4444 677787776 3221 1 1233344567 999984 4456766644 3455554334 333321 23
Q ss_pred ccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
+.+|.+|++|--+ ++|.+|+- .....|..+|-+ -+...+...+-.|.+|+.++-++.||+++.
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~---------------lD~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDW 1130 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSV---------------LDKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDW 1130 (1289)
T ss_pred CCCccceeeeeccceeeeeccc---------------cchhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccc
Confidence 5689999999654 67777643 123457777643 233344567889999999998888999997
Q ss_pred CC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC--EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 154 WK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 154 ~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
.. .+|-+.++++ .+.++++++.-++|+|+++|+..+ -|+-...
T Consensus 1131 nRenPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt------------------------------ 1177 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGT------------------------------ 1177 (1289)
T ss_pred cccCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecCC------------------------------
Confidence 54 4677777765 345677777778999999998765 3554433
Q ss_pred cCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 230 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 230 ~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.++..+.++|.-.+.+.. + +.++-++..++..+|.+.+.-++|+-+++
T Consensus 1178 -----~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1178 -----KRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred -----cceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence 477788887654444331 2 34667777776679999998888877654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00023 Score=64.03 Aligned_cols=154 Identities=15% Similarity=0.084 Sum_probs=86.7
Q ss_pred eEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+.++ +|.. +.+........ ...+.+||+ |..+... ..|+.++ .+| .+.+... . .......+.++
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~----g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-P----GMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-C----CcccCcEECCC
Confidence 566666 4433 33332222223 677899996 4444322 3588888 667 5555322 1 12345678888
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~ 163 (287)
|. |.++.. ......||.++.++++...+...........++|||+.++++... ...|++++.
T Consensus 257 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 257 GRKVVMSLS---------------QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCEEEEEEe---------------cCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 86 444311 112346999998878776665433334457899999987776543 246888887
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTF 193 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 193 (287)
++... +.+. ...+......+.++|+.
T Consensus 322 ~g~~~---~~lt-~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 322 DGSNP---RRIS-FGGGRYSTPVWSPRGDL 347 (435)
T ss_pred CCCCe---EEee-cCCCcccCeEECCCCCE
Confidence 65322 2221 11222334667788853
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00023 Score=62.30 Aligned_cols=170 Identities=14% Similarity=0.172 Sum_probs=95.0
Q ss_pred CcEE-EEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 5 GVIY-TAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 5 G~l~-~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
++|+ +.. .+|.|..++ +.+..........+..++++.+||+ +|+++....|.++| .++ +..+.. + .
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G---~ 78 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---G---G 78 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---S
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---C---C
Confidence 3455 444 578999999 3444333333333332677899996 88888666799999 565 444422 2 3
Q ss_pred ccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--------cccceEEEccCCCE
Q 023085 77 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------YFANGVALSRDEDY 147 (287)
Q Consensus 77 ~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~ 147 (287)
.+.+++++++|+ +++++. ..+.+..+|.++.+........ ..+.++..++....
T Consensus 79 ~~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp EEEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred CcceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 578899999997 455431 2467888998776643321111 12346666677765
Q ss_pred EEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++++-...+.++..|..+.+......+ .....|.+..+|++|+.+++...
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEG
T ss_pred EEEEEccCCeEEEEEeccccccceeee--cccccccccccCcccceeeeccc
Confidence 555555568999998765321111111 12235888999999987766544
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.2e-05 Score=65.20 Aligned_cols=125 Identities=11% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCceEEEEeCCCCeeEEeecccccc-------------ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccC
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFA-------------NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
..+.++.+|+.+|+...... ...+ ....+ .++.+|+... .+.++++|.+.++. .+....
T Consensus 198 ~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~-~g~l~a~d~~tG~~----~W~~~~ 269 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVV--DGGQVYAVSY-QGRVAALDLRSGRV----LWKRDA 269 (377)
T ss_pred CCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEE--ECCEEEEEEc-CCEEEEEECCCCcE----EEeecc
Confidence 44678888887776543211 0000 01112 2456888764 56899999764321 121111
Q ss_pred CCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCcc
Q 023085 179 PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQL 257 (287)
Q Consensus 179 ~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~ 257 (287)
. .....+++ ++++|+++.. +.++.++.+ |+.++.+....+.
T Consensus 270 ~-~~~~p~~~-~~~vyv~~~~-----------------------------------G~l~~~d~~tG~~~W~~~~~~~~- 311 (377)
T TIGR03300 270 S-SYQGPAVD-DNRLYVTDAD-----------------------------------GVVVALDRRSGSELWKNDELKYR- 311 (377)
T ss_pred C-CccCceEe-CCEEEEECCC-----------------------------------CeEEEEECCCCcEEEccccccCC-
Confidence 1 12233443 5789988754 578889874 7777766322221
Q ss_pred ccceEEEEEeCCEEEEEecCCCeEEEEe
Q 023085 258 MSFVTSGLQVDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 258 ~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 285 (287)
..+.....+++||+++..+ .|..++
T Consensus 312 --~~ssp~i~g~~l~~~~~~G-~l~~~d 336 (377)
T TIGR03300 312 --QLTAPAVVGGYLVVGDFEG-YLHWLS 336 (377)
T ss_pred --ccccCEEECCEEEEEeCCC-EEEEEE
Confidence 1223333567888776543 455554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00037 Score=57.36 Aligned_cols=171 Identities=17% Similarity=0.243 Sum_probs=97.5
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCccc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
+++ .|.+++.+|.|..|+ +++..........+...+.+.++++ ++++...+.+..++ .++ ...+... .
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~-----~ 93 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH-----T 93 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc-----C
Confidence 454 566677788888888 3332222222222222677788884 55555445677777 554 3333211 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+.++...+++.++++. ...+.+..++..+++.... .........+.++|+++.++.+ ..
T Consensus 94 ~~i~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~ 155 (289)
T cd00200 94 SYVSSVAFSPDGRILSSS-----------------SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQ 155 (289)
T ss_pred CcEEEEEEcCCCCEEEEe-----------------cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE-cC
Confidence 256778888887777752 2256788888765553332 2223345778889987755544 34
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~ 199 (287)
.+.+..|+....+. ...+. ........+.+.+++ .+++++..
T Consensus 156 ~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 156 DGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred CCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecCC
Confidence 67788998753221 11221 122246778888888 45555543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00014 Score=64.14 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=114.0
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccce
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFAND 80 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~ 80 (287)
++.+|+++.+|.|+.++ +|+.............+++.+ ++++|+++....++.+| .+|...+.....+.....|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p-- 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP-- 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC--
Confidence 56899999889999999 666533222222222144444 67899988666799999 6772222221111111111
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc------cceEEEccCCCEEEEEeCC
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF------ANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~l~v~~~~ 154 (287)
.+ .++.+++. ...+.|+.+|+++|++......... ....++. + +.+|+.. .
T Consensus 142 -~v-~~~~v~v~------------------~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~-~ 198 (377)
T TIGR03300 142 -LV-ANGLVVVR------------------TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGF-A 198 (377)
T ss_pred -EE-ECCEEEEE------------------CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEEC-C
Confidence 12 24567773 2356799999887876443211100 0111222 2 3466654 4
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCC---------CcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGA---------PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
++.++.+|..+++..-..... ...+. .....+ .++.+|+++..
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~-------------------------- 250 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ-------------------------- 250 (377)
T ss_pred CCEEEEEEccCCCEeeeeccc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcC--------------------------
Confidence 568889887543211111110 00000 001122 25678887765
Q ss_pred cccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 226 SQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.++.++++ |+.++..... ........+++||+++ ..+.|..+|.
T Consensus 251 ---------g~l~a~d~~tG~~~W~~~~~------~~~~p~~~~~~vyv~~-~~G~l~~~d~ 296 (377)
T TIGR03300 251 ---------GRVAALDLRSGRVLWKRDAS------SYQGPAVDDNRLYVTD-ADGVVVALDR 296 (377)
T ss_pred ---------CEEEEEECCCCcEEEeeccC------CccCceEeCCEEEEEC-CCCeEEEEEC
Confidence 578889874 7777765421 1233445688888886 3456776664
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00014 Score=65.26 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=112.0
Q ss_pred CCCC-cEEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|++.+. ...|+.++ .++...+........ ...+.+||+ |+++.... .|++++ .++ .+.+...
T Consensus 212 SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~ 290 (433)
T PRK04922 212 SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH 290 (433)
T ss_pred CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC
Confidence 4567 4666552 23588888 455555443333333 678899996 55443222 489998 666 6555322
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......++++|+ ++++. . ..+...||.++..+++.+.+...........++|+|+.+
T Consensus 291 ~-----~~~~~~~~spDG~~l~f~s-d--------------~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 291 F-----GIDTEPTWAPDGKSIYFTS-D--------------RGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred C-----CCccceEECCCCCEEEEEE-C--------------CCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 1 1224567888886 44321 1 012236898988767766554322334457899999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++...+ ..|+.++++++. ...+.. ........+.++|+ |++++..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~---~~~Lt~--~~~~~~p~~spdG~~i~~~s~~-------------------------- 399 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGS---VRTLTP--GSLDESPSFAPNGSMVLYATRE-------------------------- 399 (433)
T ss_pred EEEECCCCceeEEEEECCCCC---eEECCC--CCCCCCceECCCCCEEEEEEec--------------------------
Confidence 8876433 358888875432 222221 11233467788887 3443332
Q ss_pred cccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
.....|+.++.+|.....+..+.+
T Consensus 400 ------~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 400 ------GGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred ------CCceEEEEEECCCCceEEcccCCC
Confidence 113478888888877776654433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00014 Score=65.61 Aligned_cols=196 Identities=13% Similarity=0.101 Sum_probs=109.7
Q ss_pred CCCC-cEEEEe-cC--CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTAT-RD--GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~-~~--g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|.+.+ .+ ..|+.++ .++.+.+........ ..++.|||+ |+++.... .|+.++ .++ .+.+...
T Consensus 226 SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~ 304 (448)
T PRK04792 226 SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH 304 (448)
T ss_pred CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC
Confidence 3566 355444 22 3577777 455544443333333 678899996 65543222 388888 666 6555332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......++++|. |+++.. ......||+++.++++.+.+..........+++|||+.+
T Consensus 305 ~-----~~~~~p~wSpDG~~I~f~s~---------------~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 305 R-----AIDTEPSWHPDGKSLIFTSE---------------RGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred C-----CCccceEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEE
Confidence 1 1234456788886 444311 112347999998877776654322233456789999998
Q ss_pred EEEeCCCC--EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 149 VVCESWKF--RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 149 ~v~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++....+ .|+.++++++. ....... .......+.++|+ |++++...
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~------------------------- 414 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ------------------------- 414 (448)
T ss_pred EEEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC-------------------------
Confidence 88765433 57778875532 2222111 1122346777875 44444331
Q ss_pred cccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
....++.++.+|+....+..+.+
T Consensus 415 -------g~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 415 -------GKQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred -------CceEEEEEECCCCceEECcCCCC
Confidence 12357778888887777765443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.5e-05 Score=67.23 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=99.0
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--c------cccccceEEEccCC-
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--D------GFYFANGVALSRDE- 145 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~------~~~~~~~i~~~~~~- 145 (287)
+..|.+|++.++|++||+. ...+.|+++++.++....+. . ......+++++|+-
T Consensus 29 L~~Pw~maflPDG~llVtE-----------------R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTE-----------------RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCCceEEEEcCCCeEEEEE-----------------ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 5689999999999999973 11478999987644332221 1 12334678998763
Q ss_pred -----CEEEEEeCC---------CCEEEEEEecC--CCCcceeEEeccCCC----CCcceeeCCCCCEEEEEeccchhH-
Q 023085 146 -----DYVVVCESW---------KFRCRKYWLKG--ERKGKLETFAENLPG----APDNINLAPDGTFWIAIIKLDARR- 204 (287)
Q Consensus 146 -----~~l~v~~~~---------~~~l~~~~~~~--~~~~~~~~~~~~~~~----~~~~i~~d~~G~lwv~~~~~~~~~- 204 (287)
+.+|++.+. ..+|.++.++. ..+...+.+....+. .-..|++++||+||+++.......
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~ 171 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQG 171 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCc
Confidence 578988532 45798988753 223333333322221 123488999999999997632100
Q ss_pred ----HHHhhcc-hhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-----------EEEECCCCccccceEEEEEe-
Q 023085 205 ----MKILNSS-KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-----------RNLVDPTGQLMSFVTSGLQV- 267 (287)
Q Consensus 205 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~- 267 (287)
..-.++. |....+..+ . ...-.|+|.|++++|+.- +.|+. | ..++..++.+
T Consensus 172 ~n~~~~~~aQ~~~~~~~~~~~---d-----~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--G--~RNp~Gla~dp 239 (454)
T TIGR03606 172 ANFFLPNQAQHTPTQQELNGK---D-----YHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--G--HRNPQGLAFTP 239 (454)
T ss_pred ccccCcchhcccccccccccc---C-----cccCceEEEEEcCCCCCCCCCCccCCCcceEEEE--e--ccccceeEECC
Confidence 0000000 000000000 0 012357999999998631 22221 2 2345666665
Q ss_pred CCEEEEEecCC
Q 023085 268 DNHLYVISLTS 278 (287)
Q Consensus 268 ~g~l~i~~~~~ 278 (287)
+|+||++....
T Consensus 240 ~G~Lw~~e~Gp 250 (454)
T TIGR03606 240 DGTLYASEQGP 250 (454)
T ss_pred CCCEEEEecCC
Confidence 79999988754
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00036 Score=62.59 Aligned_cols=196 Identities=15% Similarity=0.191 Sum_probs=109.5
Q ss_pred CCCC-cEEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|.+.+. ...|+.++ +++...+........ ..++.|||+ |+++... ..|+.++ ..+ .+.+...
T Consensus 204 SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 282 (427)
T PRK02889 204 SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS 282 (427)
T ss_pred cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC
Confidence 3567 4555552 23588888 555555543333334 678899995 5554322 2488888 445 5554321
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|+ |+++. . ..+...||.++..+++.+.+...........++|||+.+
T Consensus 283 ~-----~~~~~~~wSpDG~~l~f~s-~--------------~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 283 S-----GIDTEPFFSPDGRSIYFTS-D--------------RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred C-----CCCcCeEEcCCCCEEEEEe-c--------------CCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEE
Confidence 1 1223456888886 44431 1 012346888887666655543222223356799999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++...+ ..|+.++.++++ ...+... .......+.++|+ |+.++..
T Consensus 343 a~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~-------------------------- 391 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQ-------------------------- 391 (427)
T ss_pred EEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEec--------------------------
Confidence 7765433 258888875432 2222211 1234567888886 4444433
Q ss_pred cccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
.....++.++.+|+....+..+.|
T Consensus 392 ------~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 392 ------GGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred ------CCCEEEEEEECCCCceEEeecCCC
Confidence 112467777888877776665444
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0004 Score=63.60 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=109.7
Q ss_pred CCCCc-EEEEecCCeEEEEE-CC--ceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~~--~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~ 73 (287)
.+||- |-.|..+|.|-.|| .. -+..+.++..... ++.+...|+..++..-.| +-..| ... ++++.. +
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~----P 433 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS----P 433 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceeeeecC----C
Confidence 46774 44555889999999 32 3444555444444 788889998888765545 55555 332 444421 2
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc-ccceEEEccCCCEEEEEe
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVVVCE 152 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~v~~ 152 (287)
......++++|+.|.|.++.+. ..-.++.++.++|++.-+..+-. ...+++|+|++. +.++.
T Consensus 434 ~p~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~ 496 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASG 496 (893)
T ss_pred CceeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEec
Confidence 2345578999999998885322 22357888888898765554443 346889999998 55555
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEec
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~ 199 (287)
++...+.+|++-.. .++.+.+. ......++++.|+| .|-|++..
T Consensus 497 SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred cccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEec
Confidence 67788988887432 12233321 11235568888888 58888876
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-05 Score=68.29 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=95.0
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeec-------cccccceEEEccC---
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVAD-------GFYFANGVALSRD--- 144 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-------~~~~~~~i~~~~~--- 144 (287)
..|.+|++.++|++||++ ..|.|++++.+ +.. ..+.. ......+++++|+
T Consensus 2 ~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~ 62 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS 62 (331)
T ss_dssp SSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred CCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence 468899999999999963 35789999844 444 22211 1234568899984
Q ss_pred CCEEEEEeCCC--------CEEEEEEecCC--CCcceeEEeccCC----C--CCcceeeCCCCCEEEEEeccchhHHHHh
Q 023085 145 EDYVVVCESWK--------FRCRKYWLKGE--RKGKLETFAENLP----G--APDNINLAPDGTFWIAIIKLDARRMKIL 208 (287)
Q Consensus 145 ~~~l~v~~~~~--------~~l~~~~~~~~--~~~~~~~~~~~~~----~--~~~~i~~d~~G~lwv~~~~~~~~~~~~~ 208 (287)
...+|++.+.. .+|.++..+.. .....+.+....+ . ....|++++||.||++.....+. -.
T Consensus 63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~ 139 (331)
T PF07995_consen 63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN 139 (331)
T ss_dssp C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence 46799888732 47888887644 2233333332211 1 23459999999999999774330 00
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-------------EEEECCCCccccceEEEEEe-C-CEEEE
Q 023085 209 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-------------RNLVDPTGQLMSFVTSGLQV-D-NHLYV 273 (287)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~-~-g~l~i 273 (287)
++.+ ....+.|.|++++|+.. +.|.. | +.++..++++ . |+||+
T Consensus 140 ~~~~------------------~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 140 AQDP------------------NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp GCST------------------TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEE
T ss_pred cccc------------------ccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCcEEE
Confidence 1110 22257899999998631 22221 2 3466788887 4 89999
Q ss_pred EecCCC
Q 023085 274 ISLTSN 279 (287)
Q Consensus 274 ~~~~~~ 279 (287)
+....+
T Consensus 198 ~d~G~~ 203 (331)
T PF07995_consen 198 ADNGPD 203 (331)
T ss_dssp EEE-SS
T ss_pred EccCCC
Confidence 987643
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.001 Score=59.74 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=86.1
Q ss_pred eEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+.++ +|.- ..+.... .+.....+.|||+ |.+.... ..|+.++ .+| .+.+.... .....+++.+|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-----~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----RHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-----CCcCCeEECCC
Confidence 455555 4432 2332222 2222778899996 4333222 3588888 566 55553221 12345788999
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~ 163 (287)
|+ |.++.. ..+...||.+|.++++...+...........|+|||+.|+++.... ..|+.+++
T Consensus 254 G~~La~~~~---------------~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALS---------------KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEc---------------CCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 86 444311 1122369999988787776654433445678999999776554332 36888887
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCEE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTFW 194 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lw 194 (287)
++.. .+.+. ...+......+.+||+..
T Consensus 319 ~~g~---~~~lt-~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 319 NGGA---PQRIT-WEGSQNQDADVSSDGKFM 345 (429)
T ss_pred CCCC---eEEee-cCCCCccCEEECCCCCEE
Confidence 6432 22221 111223456778888643
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=57.49 Aligned_cols=83 Identities=33% Similarity=0.464 Sum_probs=59.0
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 159 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~ 159 (287)
+|+.-...++|+|+.+.-........|...+...+.|..+|++ +.+.++..+..||||.++|+++.|||++.....|.
T Consensus 2 DIvavG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~ 79 (86)
T PF01731_consen 2 DIVAVGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIH 79 (86)
T ss_pred CEEEECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEE
Confidence 4555556688888665311111111233334456788889874 57778888999999999999999999999999999
Q ss_pred EEEec
Q 023085 160 KYWLK 164 (287)
Q Consensus 160 ~~~~~ 164 (287)
.|...
T Consensus 80 vy~~~ 84 (86)
T PF01731_consen 80 VYKRH 84 (86)
T ss_pred EEEec
Confidence 98753
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00064 Score=55.57 Aligned_cols=169 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeec-CCcccc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV-NGSKLR 76 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~-~~~~~~ 76 (287)
.+|.+|+++.++.|+.++ +|+...-........ ....-.++++++++....++.++ .+| ........ ......
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 367899999999999999 676543333322222 33345578899988656799999 888 22211111 111122
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc-----------cceEEEccCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-----------ANGVALSRDE 145 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~ 145 (287)
......++ ++.+++.. ..+.|+.+|+++|+.......... ..+-.+..++
T Consensus 114 ~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (238)
T PF13360_consen 114 SSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG 174 (238)
T ss_dssp --SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT
T ss_pred cccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC
Confidence 22333344 45566642 356899999998886443221110 1122222344
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
.+|++...+ ++..+|...++ ..+... ...+..+..-.++.||+++.
T Consensus 175 -~v~~~~~~g-~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 175 -RVYVSSGDG-RVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSS 220 (238)
T ss_dssp -EEEEECCTS-SEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEET
T ss_pred -EEEEEcCCC-eEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeC
Confidence 688887544 46666765432 123212 22233334455778999983
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00052 Score=60.85 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=118.4
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCcc------ccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeee-cC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT------LVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY-VN 71 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~------~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~-~~ 71 (287)
++.+++++.+|.|+.++ +|+........ .+ ....++. ++.+++++....++.++ .+| .-..... ..
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLD-VPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCC-CCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 57889998889999999 67654322211 11 1022232 46788887666688888 777 2221110 00
Q ss_pred C-cc---cccc-ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCC
Q 023085 72 G-SK---LRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 72 ~-~~---~~~~-~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 146 (287)
+ .. +..+ ...++ .++.+|++. ..+.++.+|+.+|+...... ...+..+++ .++
T Consensus 238 ~~~~~~~~~~~~~sP~v-~~~~vy~~~------------------~~g~l~ald~~tG~~~W~~~-~~~~~~~~~--~~~ 295 (394)
T PRK11138 238 GATEIDRLVDVDTTPVV-VGGVVYALA------------------YNGNLVALDLRSGQIVWKRE-YGSVNDFAV--DGG 295 (394)
T ss_pred CccchhcccccCCCcEE-ECCEEEEEE------------------cCCeEEEEECCCCCEEEeec-CCCccCcEE--ECC
Confidence 0 00 0000 11112 257788852 34689999998887654322 222223333 355
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEecc-CC-CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
.+|+... .+.+++++.++++. .+... .. ......++ .+|.||+++..
T Consensus 296 ~vy~~~~-~g~l~ald~~tG~~----~W~~~~~~~~~~~sp~v-~~g~l~v~~~~------------------------- 344 (394)
T PRK11138 296 RIYLVDQ-NDRVYALDTRGGVE----LWSQSDLLHRLLTAPVL-YNGYLVVGDSE------------------------- 344 (394)
T ss_pred EEEEEcC-CCeEEEEECCCCcE----EEcccccCCCcccCCEE-ECCEEEEEeCC-------------------------
Confidence 6888874 57899999764321 11111 00 01112222 36789998875
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 225 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|+.+|+ +|+.++.+....+. ..+.....+++||+++..| .|..|++
T Consensus 345 ----------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~l~v~t~~G-~l~~~~~ 393 (394)
T PRK11138 345 ----------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDKLLIQARDG-TVYAITR 393 (394)
T ss_pred ----------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCEEEEEeCCc-eEEEEeC
Confidence 57888886 58888877653221 2233445688999998654 5555543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00041 Score=61.82 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=90.4
Q ss_pred EEEeeCCccccCeEECCCCcEEEEeCC-CceEEEcc-CC-cEEEeeec---CCccccccceEEEcCC-------CcEEEE
Q 023085 26 NWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE-DG-VENFLSYV---NGSKLRFANDVVEASD-------GSLYFT 92 (287)
Q Consensus 26 ~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~-~g-~~~~~~~~---~~~~~~~~~~l~~d~~-------g~l~v~ 92 (287)
.+...-..|+ +|++.+||++||++.. ..|++++. ++ .+.+.... .......+.+|+++++ +.||++
T Consensus 24 ~va~GL~~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 24 VLLSGLNKPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEECCCCCce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 3444456788 9999999999999863 56888873 44 33332111 1112345678888754 368886
Q ss_pred cCCCCCCCcceeeeeeccCCCceEEEEeCCC--Cee---EEeeccc-----cccceEEEccCCCEEEEEeCC--------
Q 023085 93 VSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NIT---TLVADGF-----YFANGVALSRDEDYVVVCESW-------- 154 (287)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~---~~~~~~~-----~~~~~i~~~~~~~~l~v~~~~-------- 154 (287)
-+...-+.. ......|.|+.... ..+ +.+.... .....|+|+|||. ||++--.
T Consensus 103 yt~~~~~~~--------~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n 173 (454)
T TIGR03606 103 YTYKNGDKE--------LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGAN 173 (454)
T ss_pred EeccCCCCC--------ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCccc
Confidence 322100000 00123576665321 111 1111111 1234688999997 8885422
Q ss_pred ------------------------CCEEEEEEecCCC-----C---cceeEEeccCCCCCcceeeCCCCCEEEEEecc
Q 023085 155 ------------------------KFRCRKYWLKGER-----K---GKLETFAENLPGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 155 ------------------------~~~l~~~~~~~~~-----~---~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
.++|+|++.++.- + ...+.+.-.. -.|-++++|++|.||++.+..
T Consensus 174 ~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 174 FFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred ccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence 1267888876420 0 0122333111 147899999999999999773
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00053 Score=61.52 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=88.7
Q ss_pred CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcC
Q 023085 14 GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 85 (287)
Q Consensus 14 g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~ 85 (287)
..|+.++ +|+.+.+........ .+.+.|||+ |+++.... .|+.++ .++ .+.+.... .......+.+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECC
Confidence 3566666 444444433333333 678899996 55543222 488888 666 66654321 1335567888
Q ss_pred CCc-EEEE-cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEE
Q 023085 86 DGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKY 161 (287)
Q Consensus 86 ~g~-l~v~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~ 161 (287)
+|+ |.++ +.. ....||.++..+++...+...........++|||+.++++...+ ..|+.+
T Consensus 297 DG~~I~f~s~~~----------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 297 DSQNLAYTSDQA----------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred CCCEEEEEeCCC----------------CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 886 4332 211 22479999988776665543333344577899999887765433 357778
Q ss_pred EecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEE
Q 023085 162 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 197 (287)
+++++. .+.+... .......+.+||+..+..
T Consensus 361 dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 361 DLATGG---VQVLTDT--FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred ECCCCC---eEEeCCC--CCCCCceECCCCCEEEEE
Confidence 875432 2222211 112346677888644433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00054 Score=61.47 Aligned_cols=197 Identities=16% Similarity=0.175 Sum_probs=108.8
Q ss_pred CCCC-cEEEEe-c--CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~-~--~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|.+.+ . ...|+.++ +++.+.+........ ...+.|||+ |+++.... .|++++ .++ .+.+...
T Consensus 207 SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 285 (430)
T PRK00178 207 SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH 285 (430)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC
Confidence 3566 344433 2 23577777 455554443333333 577899995 55443222 488888 666 6655332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|. ++++.. ..+...|+.++..+++...+...........++|+++.+
T Consensus 286 ~-----~~~~~~~~spDg~~i~f~s~---------------~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 286 P-----AIDTEPFWGKDGRTLYFTSD---------------RGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred C-----CCcCCeEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 1 1223456777875 555311 112347999998777766554322223345789999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
++..... ..|+.+|++++. .+.+... .......+.++|+..+-+..
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~~~~~--------------------------- 393 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLIYATR--------------------------- 393 (430)
T ss_pred EEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEEEEEe---------------------------
Confidence 8876543 357888876432 2222211 12234567888864443332
Q ss_pred ccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 227 QFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
......|+.++.+|+....+..+.|
T Consensus 394 ----~~g~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 394 ----QQGRGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred ----cCCceEEEEEECCCCceEECcCCCC
Confidence 1113467778888776666654444
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.3e-05 Score=60.68 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=87.4
Q ss_pred CCCCCcEEEEe----------cCCeEEEEE-CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-Cce--EEEc-cCC-c
Q 023085 1 MDKNGVIYTAT----------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGL--HKVS-EDG-V 63 (287)
Q Consensus 1 ~d~~G~l~~~~----------~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi--~~~~-~~g-~ 63 (287)
+|++|+.|.|+ ..|.++++- .++.+.+...-..++ +++.|.|.. .|+.++. ..| +.+| ++| +
T Consensus 116 vdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~ 194 (310)
T KOG4499|consen 116 VDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL 194 (310)
T ss_pred cCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCcccc
Confidence 57899999987 246666666 666666655556778 999998884 6777544 356 6666 777 3
Q ss_pred ---EEEeeecCCcc--ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccc
Q 023085 64 ---ENFLSYVNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 137 (287)
Q Consensus 64 ---~~~~~~~~~~~--~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~ 137 (287)
..+.......+ ...|.++++|.+|.||++... .+.|+++||.+|++-. +--+.....
T Consensus 195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCceE
Confidence 23333333222 346889999999999997433 4689999999887532 222233445
Q ss_pred eEEEc-cCCCEEEEEeC
Q 023085 138 GVALS-RDEDYVVVCES 153 (287)
Q Consensus 138 ~i~~~-~~~~~l~v~~~ 153 (287)
..+|. +.-..+|++..
T Consensus 258 sccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTTA 274 (310)
T ss_pred EEEecCCCccEEEEEeh
Confidence 55664 33345676653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00023 Score=59.55 Aligned_cols=179 Identities=14% Similarity=0.127 Sum_probs=102.9
Q ss_pred CCCCCcEEEEec------CCeEEEEE-CCceEEEEe---eCCccccCeEECCCC-cEEEEeCC-----------------
Q 023085 1 MDKNGVIYTATR------DGWIKRLQ-DGTWVNWKF---IDSQTLVGLTSTKEG-HLIICDNA----------------- 52 (287)
Q Consensus 1 ~d~~G~l~~~~~------~g~i~~~~-~~~~~~~~~---~~~~~~~~i~~d~dg-~l~v~~~~----------------- 52 (287)
|.+||++.++|+ .|.|-.|+ .....+..+ ..-.|. .+.+.+|| .|.|++.+
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 467897666662 47888888 544444433 344677 89999999 78888622
Q ss_pred -CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE
Q 023085 53 -NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128 (287)
Q Consensus 53 -~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 128 (287)
..|.++| .+| +++. .........++..|+++.+|.+|++.. |..+.. ...--|...... +.+..
T Consensus 137 ~psL~~ld~~sG~ll~q~-~Lp~~~~~lSiRHLa~~~~G~V~~a~Q--------~qg~~~--~~~PLva~~~~g-~~~~~ 204 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQV-ELPPDLHQLSIRHLAVDGDGTVAFAMQ--------YQGDPG--DAPPLVALHRRG-GALRL 204 (305)
T ss_pred CCceEEEecCCCceeeee-ecCccccccceeeEEecCCCcEEEEEe--------cCCCCC--ccCCeEEEEcCC-Cccee
Confidence 1255565 555 3332 111122335788899999999999622 111100 011234444433 32333
Q ss_pred eecc-------ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 129 VADG-------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 129 ~~~~-------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+..+ -.+.-.|+++.+++.+.+++..++++..||.+...+...... + ...+++...++ |+.+..
T Consensus 205 ~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----~-D~cGva~~~~~--f~~ssG 275 (305)
T PF07433_consen 205 LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----P-DACGVAPTDDG--FLVSSG 275 (305)
T ss_pred ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc----C-ceeeeeecCCc--eEEeCC
Confidence 3221 123456889999998889888889999998654332221111 1 24467776666 444443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00071 Score=60.87 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=96.4
Q ss_pred CCCCc-EEEEe---cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~---~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~ 69 (287)
.+||. |.+.+ ....|+.++ +++.+.+........ ...+.|||+ |.++... ..|+.++ .++ .+.+...
T Consensus 210 SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 210 SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC
Confidence 35663 54444 235688888 555554443333334 678899996 5444322 2488888 666 6555332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|+ |.++.. ..+...||.++..+++.+.+...........++|||+.|
T Consensus 289 ~-----~~~~~~~~spDG~~i~f~s~---------------~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 289 P-----AIDTSPSYSPDGSQIVFESD---------------RSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred C-----CccCceeEcCCCCEEEEEEC---------------CCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 1 1223457788886 444311 112347999998777666654332233456799999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEE
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~ 197 (287)
++..... .+|+.++.++.. .+.+. . ......+.+.+||+ |+.++
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~---~~~lt-~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG---ERILT-S-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc---eEecc-C-CCCCCCCeECCCCCEEEEEE
Confidence 8776433 367788865422 22221 1 11345677888886 34433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0022 Score=57.91 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=79.0
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
...++|||+ |+++... ..|++++ .+| .+.+... .+ .....++.++|. |+++..
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~--------------- 281 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLS--------------- 281 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEe---------------
Confidence 677899996 5444322 2488888 566 5555322 11 223567888886 555311
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINL 187 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (287)
..+...||.++.++++.+.+..........+|+||++.++++... ...|+++++++++. .... .........++
T Consensus 282 ~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt-~~g~~~~~~~~ 357 (448)
T PRK04792 282 KDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLT-FEGEQNLGGSI 357 (448)
T ss_pred CCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEe-cCCCCCcCeeE
Confidence 112346999998878776655433334557899999988776643 34688888764322 2111 11112234577
Q ss_pred CCCCC-EEEEE
Q 023085 188 APDGT-FWIAI 197 (287)
Q Consensus 188 d~~G~-lwv~~ 197 (287)
.+||+ |+++.
T Consensus 358 SpDG~~l~~~~ 368 (448)
T PRK04792 358 TPDGRSMIMVN 368 (448)
T ss_pred CCCCCEEEEEE
Confidence 88885 44433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.002 Score=57.75 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=83.4
Q ss_pred eEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+.++ +|.. ..+.... .+....++.|||+ |.++.... .|+.++ .+| ...+.... ......++.++
T Consensus 177 ~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-----g~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-----GSNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-----CCccceEECCC
Confidence 566666 4433 2222222 2222678899995 54544332 488888 667 55553221 12345778888
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~ 163 (287)
|. |.++-. ..+...||.++..++..+.+...........|+|||+.++++... ...|+.++.
T Consensus 251 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 251 GRTLAVALS---------------RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCEEEEEEc---------------cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 85 444311 112346999988766665554332233456799999987766532 335777765
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTF 193 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 193 (287)
++.. .+... ..........+.++|+.
T Consensus 316 ~~g~---~~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 316 SGGA---AQRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred CCCc---eEEEe-cCCCCcCceEECCCCCE
Confidence 4432 11111 11112334667888863
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0015 Score=58.64 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=79.4
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
..++.+||+ |+.+... ..|++++ .+| .+.+... .+ ......++++|. |.++..
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s--------------- 267 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLS--------------- 267 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEe---------------
Confidence 677889996 5554433 2488888 666 5554322 11 223567888886 544311
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINL 187 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (287)
..+...|+.++..+++...+...........|+|||+.++++.... ..|+.++.++.+ .+... .........++
T Consensus 268 ~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLT-FQGNYNARASV 343 (433)
T ss_pred CCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEee-cCCCCccCEEE
Confidence 1123469999998887766544333334578999999877765332 358888875432 21111 11123345778
Q ss_pred CCCCC-EEEEE
Q 023085 188 APDGT-FWIAI 197 (287)
Q Consensus 188 d~~G~-lwv~~ 197 (287)
.++|+ |++++
T Consensus 344 SpDG~~Ia~~~ 354 (433)
T PRK04922 344 SPDGKKIAMVH 354 (433)
T ss_pred CCCCCEEEEEE
Confidence 88885 44433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0013 Score=53.74 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=108.7
Q ss_pred CCeEEEEE--CCceEEEEeeCCccccC-e--EECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccceEEEcCC
Q 023085 13 DGWIKRLQ--DGTWVNWKFIDSQTLVG-L--TSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 13 ~g~i~~~~--~~~~~~~~~~~~~~~~~-i--~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
+|.|..+| +|+. .|.........+ . ....++++|+++..+.|+.++ .+|.........+ +...+ . .-.+
T Consensus 2 ~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~--~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKE-LWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGA--P-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEE-EEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSG--E-EEET
T ss_pred CCEEEEEECCCCCE-EEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccce--e-eecc
Confidence 46677777 4443 333221111112 2 444678999998778899999 6882222222111 11121 2 3335
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccc----cccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF----YFANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~----~~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
+.+++.. ..+.|+.+|..+|++.... ... ..........+++.+|+... ++.|+.+
T Consensus 77 ~~v~v~~------------------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~ 137 (238)
T PF13360_consen 77 GRVYVGT------------------SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVAL 137 (238)
T ss_dssp TEEEEEE------------------TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEE
T ss_pred ccccccc------------------ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEE
Confidence 7787742 3458999998888865542 111 11111222233666777764 6789999
Q ss_pred EecCCCCcceeEEeccCCC-C--------CcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 162 WLKGERKGKLETFAENLPG-A--------PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-~--------~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
|+++++....... ..... . ...+.++ ++.++++...
T Consensus 138 d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--------------------------------- 182 (238)
T PF13360_consen 138 DPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVIS-DGRVYVSSGD--------------------------------- 182 (238)
T ss_dssp ETTTTEEEEEEES-STT-SS--EEEETTEEEEEECC-TTEEEEECCT---------------------------------
T ss_pred ecCCCcEEEEeec-CCCCCCcceeeecccccceEEE-CCEEEEEcCC---------------------------------
Confidence 9764322111111 11000 0 0122233 4578888876
Q ss_pred CceEEEEECCC-CcEEEEEECCCCccccceEE-EEEeCCEEEEEecCCCeEEEEeCC
Q 023085 233 GGAHLIHVAED-GTIIRNLVDPTGQLMSFVTS-GLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 233 ~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
+.++.+|.. |+.++... ..+ ... ....++.||+++ ..+.|..+|+.
T Consensus 183 --g~~~~~d~~tg~~~w~~~-~~~-----~~~~~~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 183 --GRVVAVDLATGEKLWSKP-ISG-----IYSLPSVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp --SSEEEEETTTTEEEEEEC-SS------ECECEECCCTEEEEEE-TTTEEEEEETT
T ss_pred --CeEEEEECCCCCEEEEec-CCC-----ccCCceeeCCEEEEEe-CCCEEEEEECC
Confidence 235666755 55454222 221 333 455689999999 78899998863
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0024 Score=56.98 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=95.3
Q ss_pred CCCC-cEEEEecC---CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTATRD---GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~~~---g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|++.+.. ..|+.++ +++............ .+++.+||+ |+++... ..|+.++ .++ .+.+...
T Consensus 198 Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 198 SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC
Confidence 3556 35554422 4677787 455555444333344 678899995 6555332 2488888 556 5554321
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|. |.++... .....||.++..+++...+...........++|+++.+
T Consensus 277 ~-----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 277 P-----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred C-----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence 1 1122345667775 4332110 12347999998777766554444445567899999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEec
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~ 199 (287)
+++.... .+|+.+++++.. .+.+.. ........+.++|+ |++++..
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~---~~~l~~--~~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGG---ERVLTD--TGLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred EEEEccCCceEEEEEeCCCCC---eEEccC--CCCCCCceECCCCCEEEEEEeC
Confidence 8876543 267888865421 222211 11233456777775 5444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0042 Score=55.48 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=84.2
Q ss_pred eEEEEE-CCceEEEEeeCCccccCeEECCCCc--EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH--LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~--l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
+|+..+ +|.-.+...... +.......|||+ +++.... ..|++++ .+| .+.+... .+ ......+.+|
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g----~~~~~~~SPD 243 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG----MLVVSDVSKD 243 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC----cEEeeEECCC
Confidence 455555 444333222222 222567789995 5655433 3499999 777 6666432 11 1123457788
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~ 163 (287)
|. +.++.. ......||.++..+++.+.+...........|+|||+.|+++.... ..|+++++
T Consensus 244 G~~la~~~~---------------~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 244 GSKLLLTMA---------------PKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCEEEEEEc---------------cCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 84 544321 1234579999987777766543322223346999999888876433 36888888
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTF 193 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 193 (287)
++++.. ..... +. .+..++++|+.
T Consensus 309 ~~g~~~---rlt~~--g~-~~~~~SPDG~~ 332 (419)
T PRK04043 309 NSGSVE---QVVFH--GK-NNSSVSTYKNY 332 (419)
T ss_pred CCCCeE---eCccC--CC-cCceECCCCCE
Confidence 654321 11111 11 13477888863
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0013 Score=54.61 Aligned_cols=225 Identities=14% Similarity=0.130 Sum_probs=126.9
Q ss_pred CccccCeEECCCCcEEEEeCCCc-eEEEccC-----C-cEEEeeecC---C-ccccccceEEEcCCCcEEEEcCCCCCCC
Q 023085 32 SQTLVGLTSTKEGHLIICDNANG-LHKVSED-----G-VENFLSYVN---G-SKLRFANDVVEASDGSLYFTVSSSKYLP 100 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~~g-i~~~~~~-----g-~~~~~~~~~---~-~~~~~~~~l~~d~~g~l~v~~~~~~~~~ 100 (287)
.+++ +|++.|.+-+||++...+ ...|+-. + ..++.-... + .....|+++++..-..+-++... +-+.
T Consensus 23 ~N~W-Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g-~~~~ 100 (336)
T TIGR03118 23 RNAW-GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG-ITGP 100 (336)
T ss_pred cccc-eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC-cccc
Confidence 4788 999999999999986655 3444422 4 222222211 1 12357888888754444343211 1110
Q ss_pred cceeeeeeccCCCceEEEEeCCCCee------EEeecc--ccccceEEEcc--CCCEEEEEeCCCCEEEEEEecCCCCcc
Q 023085 101 HEYCLDILEGKPHGQLLKYDPSSNIT------TLVADG--FYFANGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGK 170 (287)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~--~~~~~~i~~~~--~~~~l~v~~~~~~~l~~~~~~~~~~~~ 170 (287)
..+++.++.+.|.-+.+.-+.. ..+... ..--.|+++.. .+..||.++...++|-+||-.=.....
T Consensus 101 ----a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 101 ----SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred ----eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 1123344556676666532222 111111 11124677653 367899999999999999843111111
Q ss_pred eeEEecc-CC--CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEE
Q 023085 171 LETFAEN-LP--GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII 247 (287)
Q Consensus 171 ~~~~~~~-~~--~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ 247 (287)
...|... .+ -.|-+|.- -.++|||+-.... ++.... ......+-|-.||++|+.+
T Consensus 177 ~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd--------------------~~~~d~-v~G~G~G~VdvFd~~G~l~ 234 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQD--------------------ADRNDE-VAGAGLGYVNVFTLNGQLL 234 (336)
T ss_pred CCCccCCCCCCCCCCcceEE-ECCeEEEEEEecC--------------------Cccccc-ccCCCcceEEEEcCCCcEE
Confidence 1122211 11 13555532 3578999986521 000000 0134456889999999999
Q ss_pred EEEECCCCccccceEEEEEe-------CCEEEEEecCCCeEEEEeC
Q 023085 248 RNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-------~g~l~i~~~~~~~i~~~~~ 286 (287)
+.+.+ +..++.+.++... .|.|.||++...+|-.||-
T Consensus 235 ~r~as--~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 235 RRVAS--SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred EEecc--CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 99975 3346777666652 3889999999999999984
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0018 Score=56.02 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=70.4
Q ss_pred cEEEEeCC-----CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCce
Q 023085 45 HLIICDNA-----NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQ 115 (287)
Q Consensus 45 ~l~v~~~~-----~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 115 (287)
++||.+.. +.+.++| .++ +..+. . + ..|..+ +.++| .+|+++...+.+. -+.....
T Consensus 14 ~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~-~--G---~~P~~~-~spDg~~lyva~~~~~R~~--------~G~~~d~ 78 (352)
T TIGR02658 14 RVYVLDPGHFAATTQVYTIDGEAGRVLGMTD-G--G---FLPNPV-VASDGSFFAHASTVYSRIA--------RGKRTDY 78 (352)
T ss_pred EEEEECCcccccCceEEEEECCCCEEEEEEE-c--c---CCCcee-ECCCCCEEEEEeccccccc--------cCCCCCE
Confidence 57777654 4688898 555 33332 1 2 256665 88876 6899876432211 1223467
Q ss_pred EEEEeCCCCeeEEeec--------cccccceEEEccCCCEEEEEeCC-CCEEEEEEecCC
Q 023085 116 LLKYDPSSNITTLVAD--------GFYFANGVALSRDEDYVVVCESW-KFRCRKYWLKGE 166 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~l~v~~~~-~~~l~~~~~~~~ 166 (287)
|..+|+.+.+...-.. ....++.++++|||+.|||++.. ...+.++|+..+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 8899998877543222 13456689999999999999966 788999998653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0035 Score=55.96 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=113.6
Q ss_pred CCCCc--EEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEee
Q 023085 2 DKNGV--IYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLS 68 (287)
Q Consensus 2 d~~G~--l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~ 68 (287)
.+||. +++.+. ...|+.++ +++.+.+....+... ...+.|||+ |.++... ..|+.++ .++ .+++..
T Consensus 196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 196 ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc
Confidence 35663 665552 35688888 666666654433333 456789994 5555322 3589998 666 666643
Q ss_pred ecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCE
Q 023085 69 YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 147 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 147 (287)
... ......+.+||+ |+++... .+...||.++..+++.+.+...... + ..++|||+.
T Consensus 275 ~~~-----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~ 332 (419)
T PRK04043 275 YPG-----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNY 332 (419)
T ss_pred CCC-----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCE
Confidence 211 111235788884 6664211 1234799999988887665432211 2 478999998
Q ss_pred EEEEeCCC--------CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHH
Q 023085 148 VVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVL 218 (287)
Q Consensus 148 l~v~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~ 218 (287)
+.++.... ..|+.++++++. .+.+.. .+......+.+||+ |.+++..
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~--~~~~~~p~~SPDG~~I~f~~~~------------------- 388 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTA--NGVNQFPRFSSDGGSIMFIKYL------------------- 388 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCC--CCCcCCeEECCCCCEEEEEEcc-------------------
Confidence 77665432 468888876532 222221 11223466788886 4444433
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEECCCCc
Q 023085 219 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 256 (287)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~ 256 (287)
.....|..++.+|+....+....|.
T Consensus 389 -------------~~~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 389 -------------GNQSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred -------------CCcEEEEEEecCCCeeEEeecCCCc
Confidence 1235688889899877777654443
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.8e-05 Score=66.23 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=91.1
Q ss_pred cccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-----ccccccceEEEccCCCEEE
Q 023085 76 RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-----DGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~l~ 149 (287)
..|-+|+++.+| +|||+|+. -+|+.+++..+..+.+. ..+.+.|++.++++| .+|
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vy 175 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVY 175 (376)
T ss_pred CCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEE
Confidence 578899999987 99998755 47999998866544433 235667899999855 599
Q ss_pred EEeCCC-----------------CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcch
Q 023085 150 VCESWK-----------------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 150 v~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~ 212 (287)
++++.. +|+.+||..++ ..+++...+ ..|+|+++.+|+...+.+.....++.+|+..-|
T Consensus 176 FTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK---~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~ 251 (376)
T KOG1520|consen 176 FTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK---VTKVLLDGL-YFPNGLALSPDGSFVLVAETTTARIKRYWIKGP 251 (376)
T ss_pred EeccccccchhheEEeeecCCCccceEEecCccc---chhhhhhcc-cccccccCCCCCCEEEEEeeccceeeeeEecCC
Confidence 998743 36666665332 122222222 258999999999988888887778888888887
Q ss_pred hH--HHHHHh-CCcccccc
Q 023085 213 LI--KHVLAA-YPKLFSQF 228 (287)
Q Consensus 213 ~~--~~~~~~-~~~~~~~~ 228 (287)
.+ +.++.. +|+++..|
T Consensus 252 k~gt~EvFa~~LPG~PDNI 270 (376)
T KOG1520|consen 252 KAGTSEVFAEGLPGYPDNI 270 (376)
T ss_pred ccCchhhHhhcCCCCCcce
Confidence 64 335544 77777664
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0012 Score=55.75 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=45.3
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCC-CcceeEEeccC--CCCCcceeeCC--CCCEEEEEec
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLETFAENL--PGAPDNINLAP--DGTFWIAIIK 199 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~d~--~G~lwv~~~~ 199 (287)
...|++++++|. ||++....+.|.+++.+++- ..+.+.+.... --.|+++.++. +|.||+.+..
T Consensus 187 ~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 187 QSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 456888999775 99999999999999976531 12344444322 24799999999 9999999976
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0031 Score=54.46 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=87.2
Q ss_pred ccCeEECCCCcEEEEeCCCceEEEc--cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 35 LVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
+.++...+.|..++.....+-+.|. ++| +...... .........++++||.|+.+ +
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgLifgt-----------------g 365 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGLIFGT-----------------G 365 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCceEEec-----------------c
Confidence 3377788999877776667777776 666 4444332 11234678899999999885 3
Q ss_pred CCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 111 KPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
..++.|-.||.+++. +..+.........|.|+..|-+|.++ ...+.+..||+.. ...++.+.....-....+.+|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~-add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA-ADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE-ecCCeEEEEEehh--hcccceeeccccccceeEEEcC
Confidence 446667777776443 33344444455678898777544444 4455699999853 2334444321111256788999
Q ss_pred CCCEEEEEe
Q 023085 190 DGTFWIAII 198 (287)
Q Consensus 190 ~G~lwv~~~ 198 (287)
.|.+.+...
T Consensus 443 SGt~L~~~g 451 (506)
T KOG0289|consen 443 SGTYLGIAG 451 (506)
T ss_pred CCCeEEeec
Confidence 997555553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.002 Score=57.91 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCCc-EEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+||. |.+.+. ...|+.++ +++.+.+....+... .+++.|||+ |.++.... .|+.++ .++ .+.+...
T Consensus 212 SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 290 (429)
T PRK01742 212 SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG 290 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC
Confidence 35663 444442 23577777 454444443333333 678899996 55543222 377788 556 6555332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|. |+++.. ..+...||.++..++....+... . ....++|||+.+
T Consensus 291 ~-----~~~~~~~wSpDG~~i~f~s~---------------~~g~~~I~~~~~~~~~~~~l~~~-~--~~~~~SpDG~~i 347 (429)
T PRK01742 291 A-----GNNTEPSWSPDGQSILFTSD---------------RSGSPQVYRMSASGGGASLVGGR-G--YSAQISADGKTL 347 (429)
T ss_pred C-----CCcCCEEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCeEEecCC-C--CCccCCCCCCEE
Confidence 1 1345678888987 444311 11234688888765555443221 1 335689999988
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++... ..++++|+.+++ ....... .......+.++|+..+.+.
T Consensus 348 a~~~~--~~i~~~Dl~~g~---~~~lt~~--~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 348 VMING--DNVVKQDLTSGS---TEVLSST--FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEEcC--CCEEEEECCCCC---eEEecCC--CCCCCceECCCCCEEEEEE
Confidence 77753 568888875432 2222111 1123467888997655554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0072 Score=53.90 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=86.4
Q ss_pred eEEEEE-CCc-eEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~-~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+..+ ++. .+.+........ ...+.+||+ |+++... ..|++++ .+| ...+... . ......++.++
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~----~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-P----GMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-C----CCccceEECCC
Confidence 466665 332 333333222233 667889996 4444322 2488888 667 5544321 1 12345678888
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~ 163 (287)
|. |+++... .....|+.++..+++...+...........++||++.|+++.... ..|+.++.
T Consensus 245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 85 5554211 123469999988776655543322233457889998777665332 36888887
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++.+ ...+. .........++.++|+..+.+.
T Consensus 310 ~~~~---~~~l~-~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 310 DGGE---VRRLT-FRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCCC---EEEee-cCCCCccCeEECCCCCEEEEEE
Confidence 5432 22221 1122345677888886444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0033 Score=54.98 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=78.6
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEE
Q 023085 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 194 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lw 194 (287)
.|-.++.++++++.+..++.....+..+++|+.+.+++. ...||.+|++++ +.+.......+...+++..+++ -|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididng---nv~~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCC---CeeEecccccceeEEEEEcCCc-ee
Confidence 577778787888888888888888999999998888764 567999998754 2333332233456666666665 56
Q ss_pred EEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEE
Q 023085 195 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274 (287)
Q Consensus 195 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~ 274 (287)
++-.- |+.+ -+..|-.++.+|..+...+++.+ -....++-.+...||+-
T Consensus 458 iAYaf----------------------P~gy-------~tq~Iklydm~~~Kiy~vTT~ta--~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 458 IAYAF----------------------PEGY-------YTQSIKLYDMDGGKIYDVTTPTA--YDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEec----------------------Ccce-------eeeeEEEEecCCCeEEEecCCcc--cccCcccCCCCcEEEEE
Confidence 66543 1110 02355566666655555565543 23333444445667766
Q ss_pred ecC
Q 023085 275 SLT 277 (287)
Q Consensus 275 ~~~ 277 (287)
+.+
T Consensus 507 s~R 509 (668)
T COG4946 507 SAR 509 (668)
T ss_pred ecc
Confidence 653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0062 Score=53.86 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=104.6
Q ss_pred CC-cEEEEecCCeEEEEE--CCceEEEE-e-eCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCcccc
Q 023085 4 NG-VIYTATRDGWIKRLQ--DGTWVNWK-F-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 4 ~G-~l~~~~~~g~i~~~~--~~~~~~~~-~-~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
+| .||-++.+|.|..|+ .|..-++. . ..+... +++....+.|+...+..-+.+++ .++ .+...... ...
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~---lg~ 406 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK---LGS 406 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCcccccceee---cCC
Confidence 44 689999999999999 33322221 1 123334 78888888998888777788877 433 33221101 123
Q ss_pred ccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.|-++++.++|. +.++. ...|..+.-. +.+.... ....+..++++|++..+.|... .
T Consensus 407 QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~-~~~~~~~-~~y~~s~vAv~~~~~~vaVGG~-D 464 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQ-TKVSSIP-IGYESSAVAVSPDGSEVAVGGQ-D 464 (603)
T ss_pred CceeEEEcCCCCEEEEEe-------------------cCcEEEEecC-Ccceeec-cccccceEEEcCCCCEEEEecc-c
Confidence 567899998874 44432 2345555422 2232222 3446788999999997777654 5
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++|+.|.+.+....+..... ...+.+..+++.+||.+..++..
T Consensus 465 gkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred ceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEecc
Confidence 67999999875432221111 23345788999999988888865
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0089 Score=53.66 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=77.2
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
...+.|||+ |.++... ..|++++ .+| .+.+... . .......+.++|. |.++...
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~----g~~~~~~~SpDG~~la~~~~~-------------- 263 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-E----GLNGAPAWSPDGSKLAFVLSK-------------- 263 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-C----CCcCCeEECCCCCEEEEEEcc--------------
Confidence 667889995 5343322 2488888 666 5555322 1 1223467888886 4443111
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINL 187 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (287)
.+...||.+|.++++.+.+...........|+||++.++++... ...|+.+++++++. +.+. ..........+
T Consensus 264 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt-~~~~~~~~~~~ 338 (430)
T PRK00178 264 -DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVT-FVGNYNARPRL 338 (430)
T ss_pred -CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEee-cCCCCccceEE
Confidence 12346999999878776654433333456789999987776543 24688888754332 2221 11112234566
Q ss_pred CCCCC-EEEEE
Q 023085 188 APDGT-FWIAI 197 (287)
Q Consensus 188 d~~G~-lwv~~ 197 (287)
.++|+ |+++.
T Consensus 339 Spdg~~i~~~~ 349 (430)
T PRK00178 339 SADGKTLVMVH 349 (430)
T ss_pred CCCCCEEEEEE
Confidence 77775 44433
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0066 Score=54.94 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=86.5
Q ss_pred CeEECCCCcEEEEeCC-CceEEEc-cCC---cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVS-EDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~-~~g---~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.+++.+||++.++... ..|.+++ +.. +..+. + ....++++++.++|++.++. .
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~----g-H~~~v~~~~f~p~g~~i~Sg-----------------s 265 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK----G-HSTYVTSVAFSPDGNLLVSG-----------------S 265 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec----C-CCCceEEEEecCCCCEEEEe-----------------c
Confidence 8899999986666444 3455565 333 33332 1 23467899999999888863 3
Q ss_pred CCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCC-CCcceeeCC
Q 023085 112 PHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG-APDNINLAP 189 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~ 189 (287)
.++.|..+|.++++.... ........+++++++++.++.+ +..+.|..||..+..+.-...+...... ....+.+++
T Consensus 266 ~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP 344 (456)
T ss_pred CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC
Confidence 356788888887775544 3444566788999999966666 5578899999865432201111111111 125567788
Q ss_pred CCC-EEEEEe
Q 023085 190 DGT-FWIAII 198 (287)
Q Consensus 190 ~G~-lwv~~~ 198 (287)
+|. ++++..
T Consensus 345 ~~~~ll~~~~ 354 (456)
T KOG0266|consen 345 NGKYLLSASL 354 (456)
T ss_pred CCcEEEEecC
Confidence 885 444443
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00037 Score=64.52 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCccccCeEECCCC-cEEEEeCC-C--ceEEEccCC--cEEEeeecCCccccccceEEEcC-CCcEEEEcCCCCCCCcce
Q 023085 31 DSQTLVGLTSTKEG-HLIICDNA-N--GLHKVSEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEY 103 (287)
Q Consensus 31 ~~~~~~~i~~d~dg-~l~v~~~~-~--gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~ 103 (287)
...|. +|++|.-+ ++|.++.- . ++..+ +| .+.+... .+-.|.+|++|+ .|+||.+|..
T Consensus 1067 L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~L--dG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWn-------- 1131 (1289)
T KOG1214|consen 1067 LISPE-GIAVDHIRRNMYWTDSVLDKIEVALL--DGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWN-------- 1131 (1289)
T ss_pred CCCcc-ceeeeeccceeeeeccccchhheeec--CCceeeEEEee----cccCcceEEeecccCceeecccc--------
Confidence 35678 99999877 47777643 2 23333 45 3334332 245788999997 5799998744
Q ss_pred eeeeeccCCCceEEEEeCCCCeeEE--eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCC
Q 023085 104 CLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA 181 (287)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
.+ .-.|-+.+++ |+..+ +...+..|||+.|+|-.+.|.|.+.+.+++-+...++. ++...+. ..-+
T Consensus 1132 -Re------nPkIets~mD-G~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~--~LqY 1199 (1289)
T KOG1214|consen 1132 -RE------NPKIETSSMD-GENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQN--NLQY 1199 (1289)
T ss_pred -cc------CCcceeeccC-CccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhh--cccC
Confidence 22 2235555554 33333 34677899999999999999999999999999887643 2222221 1126
Q ss_pred CcceeeCCCCCEEEEEec
Q 023085 182 PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 182 ~~~i~~d~~G~lwv~~~~ 199 (287)
|-+++-+.+. +|.+.++
T Consensus 1200 PF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1200 PFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred ceeeeecccc-ceeeccc
Confidence 8888887776 8888887
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0081 Score=49.76 Aligned_cols=226 Identities=13% Similarity=0.146 Sum_probs=123.1
Q ss_pred CCCCCcEEEE-ecCCeEEEEE--CCceEEEEeeCCccc-cCeEECCCCcEEEEeCC--CceEEEc-cCC--cEEEeeecC
Q 023085 1 MDKNGVIYTA-TRDGWIKRLQ--DGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNA--NGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 1 ~d~~G~l~~~-~~~g~i~~~~--~~~~~~~~~~~~~~~-~~i~~d~dg~l~v~~~~--~gi~~~~-~~g--~~~~~~~~~ 71 (287)
|+.+|...++ +.+..+.-|+ ++............. ......++..+..++.. ..|..++ .+. ++.+.
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~---- 97 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP---- 97 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC----
Confidence 4577865555 4666777788 565544433322111 02233455555555432 2466666 333 44432
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
| .-..++.|.+.+.+..+++.+ .+..|..||.+..+-..+. ....+.-.+++|+|- ++.+
T Consensus 98 G-H~~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GL-ifA~ 157 (311)
T KOG1446|consen 98 G-HKKRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGL-IFAL 157 (311)
T ss_pred C-CCceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEE-ecCCCcceeECCCCc-EEEE
Confidence 2 124678899999889999632 2456666776532221111 123445567999885 4444
Q ss_pred eCCCCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
...+..|..||+..-..+-...+.-. ....-..|.+.++|+ |.+++..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----------------------------- 208 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----------------------------- 208 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-----------------------------
Confidence 44555888899752111212222211 112346788999996 6666655
Q ss_pred ccCCCceEEEEEC-CCCcEEEEEECCCCccccceEEEEE-eCCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.++.+| .+|..+..|+..... .+.+-.++. -++.-.+++...++|+++++
T Consensus 209 ------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 209 ------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 4667777 478888888764322 112223333 35555566666677777665
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0054 Score=56.03 Aligned_cols=59 Identities=15% Similarity=0.087 Sum_probs=38.3
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC-----cc---ccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----QT---LVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-----~~---~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.+|+++.++.|+.++ +|+......... .+ ..+.++..++++|+++....|+.+| .+|
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCC
Confidence 67899999889999999 565432221111 00 1023333348999998766799999 777
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0059 Score=50.22 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=99.9
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe--eccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.+..++.+..+|.||.+... -+...|.++|++++++... .+.-.+..|+++. +..+|.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEES
T ss_pred ccCccEEecCCCEEEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEe
Confidence 35567888778999996322 1345799999999886543 3344577899876 446999999
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
.++..++||.+. +.....+. .++..=|++.|. ..||++..+
T Consensus 108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS---------------------------------- 148 (264)
T PF05096_consen 108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGS---------------------------------- 148 (264)
T ss_dssp SSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SS----------------------------------
T ss_pred cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCc----------------------------------
Confidence 899999999753 33333332 223345688663 369988876
Q ss_pred ceEEEEECCC-CcEEEEEEC-CCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 234 GAHLIHVAED-GTIIRNLVD-PTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
..|..+||+ -+....+.. .++.+......+-..+|.||.--+..++|.++|-
T Consensus 149 -~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 149 -SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred -cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 489999986 345555544 2455566666777679999999999999999984
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.015 Score=52.23 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=64.5
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+.+.|||+ |..+... ..|+.++ .+| .+.+... .+ ....+++.++|+ |.++...
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g----~~~~~~wSPDG~~La~~~~~-------------- 268 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RG----HNGAPAFSPDGSRLAFASSK-------------- 268 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CC----ccCceeECCCCCEEEEEEec--------------
Confidence 788999996 4333322 2488888 666 5555322 11 223578889986 4443110
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEec
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLK 164 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~~ 164 (287)
.+...||.++..+++...+...........|+|||+.|+++.... ..|+.++..
T Consensus 269 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 269 -DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred -CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 122358889887777666554333445678999999877765433 356666544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.019 Score=52.46 Aligned_cols=253 Identities=11% Similarity=0.032 Sum_probs=121.7
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCc------cccCeEECCCCcEEEEeC---------CCceEEEc-cCCcEEE
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------TLVGLTSTKEGHLIICDN---------ANGLHKVS-EDGVENF 66 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~------~~~~i~~d~dg~l~v~~~---------~~gi~~~~-~~g~~~~ 66 (287)
+.+|+++.+|.|+.++ +|+.......... ..+...+. ++.+++++. ...++.+| .+|...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 7899999999999999 6765433332221 11133343 377787752 23588899 6772222
Q ss_pred eeec-CC----ccc------------ccc-ceEEEcC-CCcEEEEcCCCCCCCcceeeee--eccCCCceEEEEeCCCCe
Q 023085 67 LSYV-NG----SKL------------RFA-NDVVEAS-DGSLYFTVSSSKYLPHEYCLDI--LEGKPHGQLLKYDPSSNI 125 (287)
Q Consensus 67 ~~~~-~~----~~~------------~~~-~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 125 (287)
.... .. .+. ..+ ...++|. .+.+|+....+.. ..|.... ......+.|+.+|.++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~--~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSP--WNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCC--CccCCccCCCCCCceeeEEEEcCCCCC
Confidence 1111 00 000 000 1245663 5678886332100 0000000 001123479999999888
Q ss_pred eEEeeccc-------cccceEEEc----cCCC---EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 126 TTLVADGF-------YFANGVALS----RDED---YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 126 ~~~~~~~~-------~~~~~i~~~----~~~~---~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
.....+.. ..+....+. -+++ .+|+. ...+.++.+|..+++..-..... ..+++.++ +
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCcEeeEeEee------ccccccCC-c
Confidence 76643211 111111111 1232 35555 35678999998654321111110 12344444 7
Q ss_pred CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCc------cccceEEE
Q 023085 192 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ------LMSFVTSG 264 (287)
Q Consensus 192 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~------~~~~~~~~ 264 (287)
.+|+......... .. +. -..+.....+.|..+|. +|+.++........ .......+
T Consensus 340 ~vyv~~~~~~~~~---~~-------------~~-~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 340 LVYLGAFHIPLGL---PP-------------QK-KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred eEEEccccccccC---cc-------------cc-cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence 7888764310000 00 00 00011223578999996 58888887654110 00111234
Q ss_pred EEeCCEEEEEecCCCeEEEEeC
Q 023085 265 LQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 265 ~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
...++.||+++. .+.|..+|.
T Consensus 403 ~~~g~~v~~g~~-dG~l~ald~ 423 (488)
T cd00216 403 ATAGNLVFAGAA-DGYFRAFDA 423 (488)
T ss_pred EecCCeEEEECC-CCeEEEEEC
Confidence 456788888874 456666664
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0075 Score=49.88 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=99.3
Q ss_pred CCCCc-EEEEe-cCCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEc--cCC-cEEEee----
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG-VENFLS---- 68 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~--~~g-~~~~~~---- 68 (287)
+++-+ |+..+ +...|..++ .|.+...... -..|. +|..-.+|...+++.. ..++.+. .++ ......
T Consensus 94 np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~ 172 (316)
T COG3204 94 NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIP 172 (316)
T ss_pred CCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEe
Confidence 34443 44333 445667777 6665444322 23556 7777777777776644 3444444 333 222211
Q ss_pred -ecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--cc-------ccccc
Q 023085 69 -YVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DG-------FYFAN 137 (287)
Q Consensus 69 -~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~-------~~~~~ 137 (287)
...........+++.|+. .++|++- ....-.|+.++.....+.... .+ .....
T Consensus 173 L~~~~k~N~GfEGlA~d~~~~~l~~aK----------------Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 173 LGTTNKKNKGFEGLAWDPVDHRLFVAK----------------ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred ccccCCCCcCceeeecCCCCceEEEEE----------------ccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 111111234568999986 5788852 112346777764322222111 00 23457
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC------CCCcceeeCCCCCEEEEEec
Q 023085 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 138 ~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~d~~G~lwv~~~~ 199 (287)
|+.+++..+.|+|-+..+..|.-++.++...+.... ..... ..+.|++.|.+|+||+.+.+
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 888988777788777777788888877643221111 11111 13789999999999999987
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0099 Score=52.45 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=82.7
Q ss_pred CCCCcEEEEecCCeEEEEE-C-CceEEEEe-eCCccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeecCCccccc
Q 023085 2 DKNGVIYTATRDGWIKRLQ-D-GTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~-~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~ 77 (287)
-.+|.+..|+.+|.|..|. . .++.+-.. .++... ++...++|.|.-+.-.+-|...| . ..++.+.........
T Consensus 255 ~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd--~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 255 LENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWD--DNYRKLRETELPEQFGP 331 (626)
T ss_pred cCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEecc--ccccccccccCchhcCC
Confidence 3577888888888888888 2 23322222 223334 67777888877643222344333 3 333322211112234
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
|..++.. .+.|+|. +..+.|..=..+.+-..........--|++..|... +|++......
T Consensus 332 iRtv~e~-~~di~vG------------------TtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~ 391 (626)
T KOG2106|consen 332 IRTVAEG-KGDILVG------------------TTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKH 391 (626)
T ss_pred eeEEecC-CCcEEEe------------------eccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcce
Confidence 5555433 4458884 333444433333222222222233446778788665 7777766665
Q ss_pred EEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 158 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+..++ +. + ......... ......+++.|.+-+++..
T Consensus 392 v~lW~-~~-k-~~wt~~~~d---~~~~~~fhpsg~va~Gt~~ 427 (626)
T KOG2106|consen 392 VRLWN-DH-K-LEWTKIIED---PAECADFHPSGVVAVGTAT 427 (626)
T ss_pred EEEcc-CC-c-eeEEEEecC---ceeEeeccCcceEEEeecc
Confidence 66665 21 1 111111111 1334556666666666554
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.011 Score=48.08 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCcEEEEecCCeEEEEE---CCceEEEEeeCCccccCeEECC-CCcEEEEeCCCceEEEc-cCC-cEEE
Q 023085 4 NGVIYTATRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTK-EGHLIICDNANGLHKVS-EDG-VENF 66 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~~gi~~~~-~~g-~~~~ 66 (287)
.|-||.+++++..+.+| .+...+ .+.++....+.++++ ++.||++..+..+++.. .++ .+++
T Consensus 105 ~glIycgshd~~~yalD~~~~~cVyk-skcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCVYK-SKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred CceEEEecCCCcEEEecccccceEEe-cccCCceeccceecCCCceEEEEeccceEEEEccCCCCccee
Confidence 35899999999999998 232222 222233222667777 89999998777788888 556 5554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.019 Score=50.88 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=50.2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec----cccccceEEEccCCCEEEEE
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD----GFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~v~ 151 (287)
.+++++.+.+||..+++. ..++.++.||-++|+..-... ......++.++||++.+..+
T Consensus 191 kFV~~VRysPDG~~Fat~-----------------gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATA-----------------GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred cceeeEEECCCCCeEEEe-----------------cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 357777888888877752 336789999998887654433 22344678999999855544
Q ss_pred eCCCCEEEEEEecCC
Q 023085 152 ESWKFRCRKYWLKGE 166 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~ 166 (287)
+....+..||+...
T Consensus 254 -SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 254 -SADKTIKIWDVSTN 267 (603)
T ss_pred -cCCceEEEEEeecc
Confidence 45667888887654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.018 Score=50.63 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=79.6
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeC----CccccCeEECCCCcEEEEeCCCceEEEcc-CCcEEEeeecCCcc
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFID----SQTLVGLTSTKEGHLIICDNANGLHKVSE-DGVENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~----~~~~~~i~~d~dg~l~v~~~~~gi~~~~~-~g~~~~~~~~~~~~ 74 (287)
+.+|.+|+++.+|.|..++ ++.. .|.... .... +-.+..+|++|+++...-++++++ +|...+.....+ .
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~-~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLV-KWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcE-EecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC-C
Confidence 4688999999999999999 4442 342221 1223 334445999999986644999994 783333222222 1
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-----ccccceEEEccCCCEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----FYFANGVALSRDEDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~l~ 149 (287)
....+-.+-.++.+|+.. ..+.++.++..+|+....... ........ .. ...+|
T Consensus 143 -~~~~~~~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~-~~~vy 201 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IA-SGTVY 201 (370)
T ss_pred -eEEecCcEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccCce-ee-cceEE
Confidence 111122344477888841 246788888887776543211 11111111 22 33477
Q ss_pred EEeCC-CCEEEEEEecCC
Q 023085 150 VCESW-KFRCRKYWLKGE 166 (287)
Q Consensus 150 v~~~~-~~~l~~~~~~~~ 166 (287)
+.... ...++.+++..+
T Consensus 202 ~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 202 VGSDGYDGILYALNAEDG 219 (370)
T ss_pred EecCCCcceEEEEEccCC
Confidence 77543 346888887543
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.018 Score=48.31 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=70.5
Q ss_pred cEEEEe-cCCeEEEEE---CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-c----------EEEeee
Q 023085 6 VIYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V----------ENFLSY 69 (287)
Q Consensus 6 ~l~~~~-~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~----------~~~~~~ 69 (287)
.|-++| +.|+++.+. +|+...+...-..+. |++.. .++||+++. ..|+++. ... . ..+.+.
T Consensus 19 Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~-~~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr 95 (335)
T TIGR03032 19 SLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVS-PQSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPR 95 (335)
T ss_pred EEEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeee-CCeEEEEEc-ceeEEcccccccccccccCCCCCeEEeee
Confidence 466667 667777775 566665555556677 88775 468999984 5788882 111 1 111111
Q ss_pred cC-CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccc---------cccce
Q 023085 70 VN-GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF---------YFANG 138 (287)
Q Consensus 70 ~~-~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~---------~~~~~ 138 (287)
.. -.....+++|++ .++.+|+.++. -+.|..+++. -.+...- +++ =.-||
T Consensus 96 ~~~~TGdidiHdia~-~~~~l~fVNT~-----------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNG 156 (335)
T TIGR03032 96 ASYVTGDIDAHDLAL-GAGRLLFVNTL-----------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNG 156 (335)
T ss_pred eeeeccCcchhheee-cCCcEEEEECc-----------------ceeEEEECCC-CccccccCCccccccCccCceeecc
Confidence 00 011235677888 67788886533 2456666654 3333221 111 12378
Q ss_pred EEEccCCCEEEEEeC
Q 023085 139 VALSRDEDYVVVCES 153 (287)
Q Consensus 139 i~~~~~~~~l~v~~~ 153 (287)
+++. +|+--||+..
T Consensus 157 lA~~-~g~p~yVTa~ 170 (335)
T TIGR03032 157 MALD-DGEPRYVTAL 170 (335)
T ss_pred eeee-CCeEEEEEEe
Confidence 8874 5767777654
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.012 Score=48.48 Aligned_cols=140 Identities=19% Similarity=0.211 Sum_probs=83.9
Q ss_pred CCcEEEEe-cCCeEEEEECCceEEEE--eeCCccccCeEECCCCcEEEEeCCCceEEEccCC---cEEEeeecCCccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQDGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~~~~~~~~~--~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g---~~~~~~~~~~~~~~~ 77 (287)
++.||.-| ..+..+.|+...++... .-++..+ |++.| ..+||+++....|+.+|+.. ...+.-...+.+...
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 35678777 45666777722232221 2245678 88855 34799998777899999543 333433455666777
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----------c-----ccccceEEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------G-----FYFANGVAL 141 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~-----~~~~~~i~~ 141 (287)
.|.|.+- +|.||.- .| ....|.++||.+|++..... . ..--||||+
T Consensus 177 LNELE~i-~G~IyAN---------VW--------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 177 LNELEYI-NGKIYAN---------VW--------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp EEEEEEE-TTEEEEE---------ET--------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred cEeEEEE-cCEEEEE---------eC--------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 8888776 7888882 22 14579999999999875421 0 112489999
Q ss_pred ccCCCEEEEEeCCCCEEEEEEe
Q 023085 142 SRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
+|+.+.+||+.-.=..++.+.+
T Consensus 239 d~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 239 DPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp ETTTTEEEEEETT-SEEEEEEE
T ss_pred eCCCCEEEEEeCCCCceEEEEE
Confidence 9999999998643345655543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.025 Score=52.34 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=73.8
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+++++..+||.+.+|. ..++.|-.||..++- +..+..+.....++.|...|+ ..++.+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG-----------------~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssS 411 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATG-----------------AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSS 411 (893)
T ss_pred ccceeeEEECCCCcEEEec-----------------cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEee
Confidence 4578899999999998863 345678888877664 444556667778899999888 566666
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+++..||+.. ...++.|..+.+---..++.|+.|.|-++...
T Consensus 412 LDGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 412 LDGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred cCCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 788999999853 23455554332222356888999987777654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0051 Score=56.49 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=61.8
Q ss_pred CceEEEEeCCC-----CeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC------CcceeEE-ec-cCC
Q 023085 113 HGQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KGKLETF-AE-NLP 179 (287)
Q Consensus 113 ~~~v~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~------~~~~~~~-~~-~~~ 179 (287)
.+.|..+|..+ .++..+......|+|+.++|||+++|+++-.++.+-.+|.+..+ +.-.... .+ ...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 34688888776 24555555667899999999999999999888999999986421 1101111 11 122
Q ss_pred CCCcceeeCCCCCEEEEEec
Q 023085 180 GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 180 ~~~~~i~~d~~G~lwv~~~~ 199 (287)
-.|...++|.+|+.|++..-
T Consensus 375 lGPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred CCcceEEECCCCCEEEeEee
Confidence 35889999999999998864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.02 Score=46.24 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=97.3
Q ss_pred cCCeEEEEE--CCce-EEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 12 RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 12 ~~g~i~~~~--~~~~-~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+..|.-|. +|.= ..+..+....+ .+.+.+|++..++....-|..|| .++ -.+.... .+ +-..+..+.+..+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~-e~-h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF-EG-HTKNVTAVGFQCD 94 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE-ec-cCCceEEEEEeec
Confidence 667777776 5543 34555555666 88899999866654344577777 555 2233221 11 1235667888888
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
|+-..+ +..+|.+-.+|...-...+.....+..+.+++.|....|++++ .++.|+.+|+...
T Consensus 95 grWMyT-----------------gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~ 156 (311)
T KOG0315|consen 95 GRWMYT-----------------GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGEN 156 (311)
T ss_pred CeEEEe-----------------cCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCC
Confidence 874333 3346677777776433333333335568888998777788876 4678999998643
Q ss_pred CCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 167 RKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.... ....+.......+++++||..-++...
T Consensus 157 ~c~~--~liPe~~~~i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 157 SCTH--ELIPEDDTSIQSLTVMPDGSMLAAANN 187 (311)
T ss_pred cccc--ccCCCCCcceeeEEEcCCCcEEEEecC
Confidence 2111 111111123455777778876666644
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0057 Score=49.28 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=84.6
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCCcEEEeeecCCccccccceEEEc
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEA 84 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g~~~~~~~~~~~~~~~~~~l~~d 84 (287)
|.-+++++.|..|| ++...+-...+..+. ++-+.+||++....++++|--.+++.+..+..... +..+.+....
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~ 233 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---PCNVESASLH 233 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccC---cccccccccc
Confidence 33445677788888 555444333333344 88889999988877777776666443333322111 1244555667
Q ss_pred CCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 85 SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 85 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
++..+||+ +.....+++||-.+|+ +..+ -......+-+.|+|+|+ +|.+.+..+.|..|.
T Consensus 234 P~k~~fVa-----------------Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 234 PKKEFFVA-----------------GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQ 295 (334)
T ss_pred CCCceEEe-----------------cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEE
Confidence 77788886 2334568888877775 3332 22344456778999998 899888777776665
Q ss_pred e
Q 023085 163 L 163 (287)
Q Consensus 163 ~ 163 (287)
.
T Consensus 296 t 296 (334)
T KOG0278|consen 296 T 296 (334)
T ss_pred e
Confidence 4
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.024 Score=46.45 Aligned_cols=187 Identities=16% Similarity=0.225 Sum_probs=116.7
Q ss_pred CeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+++..+||+..++....+ +...| .+| ...+... -..+.++++++|.+-.++ +..
T Consensus 68 dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH-----~~dVlsva~s~dn~qivS-----------------GSr 125 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH-----TKDVLSVAFSTDNRQIVS-----------------GSR 125 (315)
T ss_pred ceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-----CCceEEEEecCCCceeec-----------------CCC
Confidence 778889999887754445 44455 566 3333211 135678899999887775 234
Q ss_pred CceEEEEeCCCCeeEEeecc--ccccceEEEccCCCEEEE-EeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 113 HGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVV-CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~l~v-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
+..+-.++..++....+... -...+-+.|+|.....++ ..+....+..+++.+-++ ...+. .-.++.+.+++.+
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSP 202 (315)
T ss_pred cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccc-cccccEEEEEECC
Confidence 55666666553333333332 344566788987633444 444555666777654222 11222 2334567799999
Q ss_pred CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeC
Q 023085 190 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD 268 (287)
Q Consensus 190 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 268 (287)
||.+-..... .+.++..|.+ ++-+..+.. +..+.++++..
T Consensus 203 DGslcasGgk----------------------------------dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fsp 243 (315)
T KOG0279|consen 203 DGSLCASGGK----------------------------------DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSP 243 (315)
T ss_pred CCCEEecCCC----------------------------------CceEEEEEccCCceeEeccC-----CCeEeeEEecC
Confidence 9988776544 4567777754 555444432 34678899999
Q ss_pred CEEEEEecCCCeEEEEeCC
Q 023085 269 NHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 269 g~l~i~~~~~~~i~~~~~~ 287 (287)
++.|+.-.-+.+|-+++++
T Consensus 244 nrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 244 NRYWLCAATATSIKIWDLE 262 (315)
T ss_pred CceeEeeccCCceEEEecc
Confidence 9999999999999988874
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.029 Score=47.20 Aligned_cols=207 Identities=15% Similarity=0.049 Sum_probs=110.1
Q ss_pred CeEECCCCcEEEE-eCC--CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIIC-DNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~-~~~--~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
+++..|.....++ ... .-.+++| .+| .........+.. +--.-+++++|++.++... ....
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTEn------------d~~~ 74 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTEN------------DYET 74 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEecc------------ccCC
Confidence 7888885543332 222 2378888 777 443323222222 2122467888875444211 1234
Q ss_pred CCceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCC-----------------CCEEEEEEecCCCCcce
Q 023085 112 PHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESW-----------------KFRCRKYWLKGERKGKL 171 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~-----------------~~~l~~~~~~~~~~~~~ 171 (287)
..|.|-.||.. ..+.++ ......|+.+.+.|||++|.|++-+ ...|..+|...+++-+.
T Consensus 75 g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred CcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 45667777776 333333 3445578999999999999998731 11233333222221111
Q ss_pred eEEe-ccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE
Q 023085 172 ETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL 250 (287)
Q Consensus 172 ~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 250 (287)
..+- .........++++.+|.+|++..... +... . .--|.... .+..+..+
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg--------------------~~~~-----~--~PLva~~~-~g~~~~~~ 205 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDGDGTVAFAMQYQG--------------------DPGD-----A--PPLVALHR-RGGALRLL 205 (305)
T ss_pred eecCccccccceeeEEecCCCcEEEEEecCC--------------------CCCc-----c--CCeEEEEc-CCCcceec
Confidence 1110 00111367799999999999997510 0000 0 01233343 34445555
Q ss_pred ECCCCc---cccceEEEEEe-C-CEEEEEecCCCeEEEEeC
Q 023085 251 VDPTGQ---LMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 251 ~~~~~~---~~~~~~~~~~~-~-g~l~i~~~~~~~i~~~~~ 286 (287)
..++.. ..+++-+++.+ + +.+-+++=.++++.++|.
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 554432 23567777775 3 456678888899988864
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.032 Score=47.42 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=120.0
Q ss_pred EEeeCCccccCeEECCCCcEEEEeCC--CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcc
Q 023085 27 WKFIDSQTLVGLTSTKEGHLIICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102 (287)
Q Consensus 27 ~~~~~~~~~~~i~~d~dg~l~v~~~~--~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~ 102 (287)
...+...|+..+...+||..|+.... ..|.+.+ .+| ..++... + +....-+...++|..+++-
T Consensus 190 l~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--g--lgg~slLkwSPdgd~lfaA--------- 256 (445)
T KOG2139|consen 190 LQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--G--LGGFSLLKWSPDGDVLFAA--------- 256 (445)
T ss_pred eeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--C--CCceeeEEEcCCCCEEEEe---------
Confidence 34445566657888899988877433 3588888 566 6666422 1 2345568899999877752
Q ss_pred eeeeeeccCCCceEEEEeCCCCeeE--EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC--Cc------cee
Q 023085 103 YCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KG------KLE 172 (287)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~--~~------~~~ 172 (287)
+. ..++++-..+..+. +..-......+-+++|.|+.|.++.+.+.+|+....+++. .. ...
T Consensus 257 --------t~-davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 257 --------TC-DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred --------cc-cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeee
Confidence 11 23454432222221 1111222556778999999999999888999887655321 11 111
Q ss_pred EEec-----------cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC
Q 023085 173 TFAE-----------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA 241 (287)
Q Consensus 173 ~~~~-----------~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (287)
.... ...+.+..++.|+.|+.-....+..+.+..+ ..-+.+|+
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~--------------------------k~~i~~fd 381 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC--------------------------KLHISRFD 381 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh--------------------------hhhhhhhc
Confidence 1110 0234577899999998777777755433333 12344555
Q ss_pred CCCcEEEEEE--C-CCCccccceEEEEE----eCCEEEEEecCCCeEEEEeC
Q 023085 242 EDGTIIRNLV--D-PTGQLMSFVTSGLQ----VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 242 ~~g~~~~~~~--~-~~~~~~~~~~~~~~----~~g~l~i~~~~~~~i~~~~~ 286 (287)
..-.....+. . -.|. .+..+++ .+++|..-....+++.+|++
T Consensus 382 tr~sp~vels~cg~i~ge---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 382 TRKSPPVELSYCGMIGGE---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccccCceEEEecccccCC---CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 4333222222 1 1122 1333333 25788888888888888876
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.04 Score=47.76 Aligned_cols=216 Identities=10% Similarity=0.060 Sum_probs=107.5
Q ss_pred cEEEEecCCeEEEEEC-C-ceEEEEee---CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCcccccc
Q 023085 6 VIYTATRDGWIKRLQD-G-TWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFA 78 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~-~-~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~~~ 78 (287)
..|++...|.|++=.+ | .++..... +..+. .+....++.+|++.....|++-...| ++.+.... ...+
T Consensus 101 ~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~ 175 (334)
T PRK13684 101 EGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVV 175 (334)
T ss_pred cEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC----cceE
Confidence 4566666666777653 2 44444322 22334 34433445667666444576665444 55543221 2356
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEE-eCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCCCC
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
+++...+++.+++.. ..|.+++. +.....+..+... ....+++.+.++++ +|++... +
T Consensus 176 ~~i~~~~~g~~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~-G 235 (334)
T PRK13684 176 RNLRRSPDGKYVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARG-G 235 (334)
T ss_pred EEEEECCCCeEEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecC-C
Confidence 778888887766642 23456654 2221234443322 23456777888887 5665433 3
Q ss_pred EEEEE-EecCC-CCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 023085 157 RCRKY-WLKGE-RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234 (287)
Q Consensus 157 ~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (287)
..++ ..++. .......-..........+++.+++++|++...
T Consensus 236 -~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~----------------------------------- 279 (334)
T PRK13684 236 -QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN----------------------------------- 279 (334)
T ss_pred -EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC-----------------------------------
Confidence 3334 23322 111110000000012345677778899998876
Q ss_pred eEEEEECCCCcEEEEEECCCCccccceEEEE-EeCCEEEEEecCCCeEEEE
Q 023085 235 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGL-QVDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 235 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~i~~~~~~~i~~~ 284 (287)
+.+++-...|+.......+.+.. .....+. .+++++|+.+..| .|.++
T Consensus 280 G~v~~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~G-~il~~ 328 (334)
T PRK13684 280 GTLLVSKDGGKTWEKDPVGEEVP-SNFYKIVFLDPEKGFVLGQRG-VLLRY 328 (334)
T ss_pred CeEEEeCCCCCCCeECCcCCCCC-cceEEEEEeCCCceEEECCCc-eEEEe
Confidence 35554433355444433223332 2334444 4578999987654 44443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.036 Score=46.08 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=83.3
Q ss_pred CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceee
Q 023085 31 DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCL 105 (287)
Q Consensus 31 ~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~ 105 (287)
...+. .+.++.+|.+.++ +...-+..|+ .+| ...+....- .+.-+.+..+ .++.-+.
T Consensus 14 ~~~i~-sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-----G~~~~~Fth~~~~~i~sS------------ 75 (311)
T KOG1446|consen 14 NGKIN-SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-----GVDLACFTHHSNTVIHSS------------ 75 (311)
T ss_pred CCcee-EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-----cccEEEEecCCceEEEcc------------
Confidence 33445 8899999987776 4345788898 777 333322111 1222223222 2332221
Q ss_pred eeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcc
Q 023085 106 DILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN 184 (287)
Q Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
...+..|.+++..+++..+ +.......+.|..+|-++ .+++.+....|..||+.. .+...... .. .+--
T Consensus 76 ----tk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~---~~cqg~l~-~~-~~pi 145 (311)
T KOG1446|consen 76 ----TKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRV---KKCQGLLN-LS-GRPI 145 (311)
T ss_pred ----CCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecC---CCCceEEe-cC-CCcc
Confidence 0123457777766666444 445556778999999886 888888888999999752 33333331 22 2335
Q ss_pred eeeCCCCCEEEEEec
Q 023085 185 INLAPDGTFWIAIIK 199 (287)
Q Consensus 185 i~~d~~G~lwv~~~~ 199 (287)
.|+|++|-++.....
T Consensus 146 ~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 146 AAFDPEGLIFALANG 160 (311)
T ss_pred eeECCCCcEEEEecC
Confidence 789999966666654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0044 Score=54.29 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=87.4
Q ss_pred cEEEEecCC-eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 6 VIYTATRDG-WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g-~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
.+.+|+.+| .|..|+ .++.+++...-++.. .+.++++|. +.+++..-.|+.++ .+| .+.+.... -..+.
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~----~~lIt 447 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE----YGLIT 447 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc----cceeE
Confidence 456777666 677777 566677766666777 889999997 77777656799999 888 66653322 23567
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
+.+.+++++ |++ |+... +--...+..+|+.++++..+..+...-..-+|+||++.||....
T Consensus 448 df~~~~nsr-~iA-----YafP~-------gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 448 DFDWHPNSR-WIA-----YAFPE-------GYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEEEcCCce-eEE-----EecCc-------ceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 788888776 443 21111 11123566777776776666655555566789999999998764
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.035 Score=45.81 Aligned_cols=220 Identities=12% Similarity=0.098 Sum_probs=120.7
Q ss_pred CC-cEEEEecCCeEEEEE--C-CceEEEEeeCCccccCeEECCCCcEEEEeCC-C--ceEEEc-c--CCcEEEeeecCCc
Q 023085 4 NG-VIYTATRDGWIKRLQ--D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-N--GLHKVS-E--DGVENFLSYVNGS 73 (287)
Q Consensus 4 ~G-~l~~~~~~g~i~~~~--~-~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~--gi~~~~-~--~g~~~~~~~~~~~ 73 (287)
|. +|.-++++|.+..|+ + .+..-++.+..=.. ..++.|.|+...+..- + -||.+. + .|..+......+.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH 144 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH 144 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc
Confidence 44 455666899999999 3 33222222211122 4577899987766422 2 255554 3 3322221111111
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEcc-CCCEEEEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSR-DEDYVVVC 151 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~-~~~~l~v~ 151 (287)
-..+.+..+-.|+.|.- +.++.....+|.++++... +.......-++.++| +++ .|++
T Consensus 145 -tgylScC~f~dD~~ilT------------------~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvS 204 (343)
T KOG0286|consen 145 -TGYLSCCRFLDDNHILT------------------GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVS 204 (343)
T ss_pred -cceeEEEEEcCCCceEe------------------cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEe
Confidence 12334444444666554 2345567777777776544 444445556777888 666 7777
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
..-...-..||+..+ .-.+.|. .-.+..+.+.+-|+|.-+.+...
T Consensus 205 g~cD~~aklWD~R~~--~c~qtF~-ghesDINsv~ffP~G~afatGSD-------------------------------- 249 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSG--QCVQTFE-GHESDINSVRFFPSGDAFATGSD-------------------------------- 249 (343)
T ss_pred cccccceeeeeccCc--ceeEeec-ccccccceEEEccCCCeeeecCC--------------------------------
Confidence 655555666776432 2233443 22235777888899977776654
Q ss_pred CCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEE
Q 023085 232 GGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK 283 (287)
Q Consensus 232 ~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~ 283 (287)
.+..-.||.. .+.+..|.. +. ....++++.+. .|+|.++++....+.+
T Consensus 250 --D~tcRlyDlRaD~~~a~ys~-~~-~~~gitSv~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 250 --DATCRLYDLRADQELAVYSH-DS-IICGITSVAFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred --CceeEEEeecCCcEEeeecc-Cc-ccCCceeEEEcccccEEEeeecCCceeE
Confidence 2344556644 556777764 22 23456666665 5777777665444443
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.016 Score=48.73 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=88.4
Q ss_pred CeEECCCCcEEEEeCC-CceEEEccCC-cEEEe-e----ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVSEDG-VENFL-S----YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~-~----~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+++ .++.+|+.+.. +.+..++++- +.+.- + .......-+.|+++.....--|+|--+..--...|..
T Consensus 107 dia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~---- 181 (335)
T TIGR03032 107 DLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWRE---- 181 (335)
T ss_pred heee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccc----
Confidence 7788 67788877644 6777777554 44332 1 1111122467888887544567763221000112221
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
....+++. +|..++++ +..++.+|++.-+. +|+ ||+.++..+.+.++|.++ ++.+... ..++.|.|+.+.
T Consensus 182 ~~~~gG~v-idv~s~ev--l~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~- 251 (335)
T TIGR03032 182 GRRDGGCV-IDIPSGEV--VASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA- 251 (335)
T ss_pred cccCCeEE-EEeCCCCE--EEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee-
Confidence 12233443 56555643 56778888887765 455 999999999999999653 3344444 577899999998
Q ss_pred CCCE-EEEEecc
Q 023085 190 DGTF-WIAIIKL 200 (287)
Q Consensus 190 ~G~l-wv~~~~~ 200 (287)
|.+ +|+..+.
T Consensus 252 -G~llvVgmSk~ 262 (335)
T TIGR03032 252 -GDFAFVGLSKL 262 (335)
T ss_pred -CCEEEEEeccc
Confidence 654 4555553
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.029 Score=49.19 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=95.9
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec----cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE----GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 150 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v 150 (287)
.+.-..|++++||.||++..+.......++..... .....+++..|+....-+.+.....+|.|++|+|....||+
T Consensus 176 ~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 176 HHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred CcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 44556799999999999844421111111100000 01112344444443343445556778999999998556999
Q ss_pred EeCCCCEEEEEEe-----cCCCCcceeEE-------------------ec-----cCCCCCcceeeCC-C------CCEE
Q 023085 151 CESWKFRCRKYWL-----KGERKGKLETF-------------------AE-----NLPGAPDNINLAP-D------GTFW 194 (287)
Q Consensus 151 ~~~~~~~l~~~~~-----~~~~~~~~~~~-------------------~~-----~~~~~~~~i~~d~-~------G~lw 194 (287)
++-..+.+.--|. .+.-.+-+-.+ .. .....|.+|++-. + |.++
T Consensus 256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lf 335 (399)
T COG2133 256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLF 335 (399)
T ss_pred EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEE
Confidence 9866533311110 00000000000 00 0001246677642 2 6788
Q ss_pred EEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc---EEEEEECCCCccccceEEEEEe-CCE
Q 023085 195 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT---IIRNLVDPTGQLMSFVTSGLQV-DNH 270 (287)
Q Consensus 195 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~-~g~ 270 (287)
|+.... -.+.+.+++|+ ..+.+-..+.. ..+..+.+. ||.
T Consensus 336 V~~hgs----------------------------------w~~~~~~~~g~~~~~~~~fl~~d~~--gR~~dV~v~~DGa 379 (399)
T COG2133 336 VGAHGS----------------------------------WPVLRLRPDGNYKVVLTGFLSGDLG--GRPRDVAVAPDGA 379 (399)
T ss_pred EEeecc----------------------------------eeEEEeccCCCcceEEEEEEecCCC--CcccceEECCCCe
Confidence 888762 25777888887 44444322221 467887775 899
Q ss_pred EEEEecCCC-eEEEEeC
Q 023085 271 LYVISLTSN-FIGKVQL 286 (287)
Q Consensus 271 l~i~~~~~~-~i~~~~~ 286 (287)
|+|++-.++ .|.|+.+
T Consensus 380 llv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 380 LLVLTDQGDGRILRVSY 396 (399)
T ss_pred EEEeecCCCCeEEEecC
Confidence 999998855 9998865
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.051 Score=46.13 Aligned_cols=169 Identities=12% Similarity=0.150 Sum_probs=79.3
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEee---CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~~ 77 (287)
...|++...|.|++-. ...++.+... +..+. .+....++..+++.....|++-...| .+.+.... ...
T Consensus 72 ~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~----~gs 146 (302)
T PF14870_consen 72 NEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSET----SGS 146 (302)
T ss_dssp TEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--------
T ss_pred CceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCC----cce
Confidence 3566666666666665 2345554322 34455 55555667777776555677766545 55543321 245
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEE-EEeCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL-KYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
+.++...++|++.+.. ..|.++ -.++....+...... ......+.|.|++. ||+.. .+
T Consensus 147 ~~~~~r~~dG~~vavs------------------~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~G 206 (302)
T PF14870_consen 147 INDITRSSDGRYVAVS------------------SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RG 206 (302)
T ss_dssp EEEEEE-TTS-EEEEE------------------TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TT
T ss_pred eEeEEECCCCcEEEEE------------------CcccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CC
Confidence 6677778888855432 234454 445542234444332 34456788899876 77776 34
Q ss_pred CEEEEEEecCCCCcceeE-Eecc-CCCC-CcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLET-FAEN-LPGA-PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~-~~~~-~~~~-~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..=+... ....... .... ..++ .-.++..+++.+|++...
T Consensus 207 g~~~~s~~~~-~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 207 GQIQFSDDPD-DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp TEEEEEE-TT-EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred cEEEEccCCC-CccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 5565544111 1111111 1111 1111 345788889999999887
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.042 Score=45.06 Aligned_cols=171 Identities=9% Similarity=0.106 Sum_probs=99.8
Q ss_pred CCCcEE-EEecCCeEEEEE--CCce-EEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEcc-CC-cEEEeeecCCccc
Q 023085 3 KNGVIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE-DG-VENFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G~l~-~~~~~g~i~~~~--~~~~-~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~-~g-~~~~~~~~~~~~~ 75 (287)
+||... -++.++.+..+| .|+. .++........ ++++++|++-.++... +.|...+. .+ ..++... .. .
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~--~~-~ 148 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED--SH-R 148 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecccEEEEEecC--CC-c
Confidence 566544 345788888888 4433 34444444556 8899999976666433 45666663 33 3333221 11 3
Q ss_pred cccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.-++++.+.|+. +.++... ..++.|-.+|.++-++... .......+.++++|||. +..+.-
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg 211 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGG 211 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCC
Confidence 467788888874 4444322 2345677777765554332 23344567889999998 677665
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.++.++.+|++..+ ....+. .......+++.|+ .+|++...
T Consensus 212 kdg~~~LwdL~~~k--~lysl~--a~~~v~sl~fspn-rywL~~at 252 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGK--NLYSLE--AFDIVNSLCFSPN-RYWLCAAT 252 (315)
T ss_pred CCceEEEEEccCCc--eeEecc--CCCeEeeEEecCC-ceeEeecc
Confidence 66788899986432 122211 1112456777665 58888765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.031 Score=48.80 Aligned_cols=221 Identities=15% Similarity=0.129 Sum_probs=118.6
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeCCcc---ccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccc
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFIDSQT---LVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~~~~---~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
+++++..--++.|| ..++..+..+.+.+ ..-+.+.++++..+.... +-|+.+. .++ +..+... ..
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie------G~ 346 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE------GV 346 (514)
T ss_pred EEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec------cE
Confidence 45554444556666 55555554443332 113556788874433322 3366666 455 4444221 35
Q ss_pred cceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEEeCC
Q 023085 78 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 78 ~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
+.++.++++|. ||++. +.|.||.+|..+..+.+.. .+.-....++.++++. ++.+.+.
T Consensus 347 v~~~~fsSdsk~l~~~~------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~ 407 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASG------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSD 407 (514)
T ss_pred EeeEEEecCCcEEEEEc------------------CCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccC
Confidence 66788888885 56642 3468999988766544332 2222344567778887 3444455
Q ss_pred CCEEEEEEecCC-CCcceeEEe--ccCCCCCcceeeCCCCCE-EEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc
Q 023085 155 KFRCRKYWLKGE-RKGKLETFA--ENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 230 (287)
Q Consensus 155 ~~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
.+-+-.|+.+.- .-.++++.. ..+......|.+.++..| -+++..
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~------------------------------- 456 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV------------------------------- 456 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc-------------------------------
Confidence 566667775421 111222221 122234667777777653 333332
Q ss_pred CCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 231 LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 231 ~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
....-+++++ |.-....+|... +..+..++++.+. .|.|-||+-. .+|..|.|
T Consensus 457 ~knalrLVHv-PS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~-grv~l~kL 511 (514)
T KOG2055|consen 457 KKNALRLVHV-PSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEA-GRVHLFKL 511 (514)
T ss_pred cccceEEEec-cceeeeccCCCC-CCcccceEEEEecCCCceEEeecCC-CceeeEee
Confidence 1112355555 445556666654 3446778888875 5888888754 45555543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00083 Score=45.74 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=52.1
Q ss_pred cceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccce
Q 023085 183 DNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV 261 (287)
Q Consensus 183 ~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~ 261 (287)
+++.++++ |.||++..+.+...-++ ...+.+ ....|+|.++||+.+....+-. ++ ..+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~------~~~~le-----------~~~~GRll~ydp~t~~~~vl~~--~L--~fp 59 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDW------VYDLLE-----------GRPTGRLLRYDPSTKETTVLLD--GL--YFP 59 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGH------HHHHHH-----------T---EEEEEEETTTTEEEEEEE--EE--SSE
T ss_pred CceeEecCCCEEEEEeCccccCccce------eeeeec-----------CCCCcCEEEEECCCCeEEEehh--CC--Ccc
Confidence 46888887 99999998743211111 112222 4457999999999998887763 44 344
Q ss_pred EEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 262 TSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 262 ~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.++.. ++..|.|+.....+|.++-|+
T Consensus 60 NGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 60 NGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred CeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 55555 457799999999999998663
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.046 Score=45.19 Aligned_cols=162 Identities=16% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCceEEEEeeCCccccCeEECCCCc--EEEEeCC-CceEEEccCC-cEEEe-eecCCccccccceEEEcCCCcE-EEEcC
Q 023085 21 DGTWVNWKFIDSQTLVGLTSTKEGH--LIICDNA-NGLHKVSEDG-VENFL-SYVNGSKLRFANDVVEASDGSL-YFTVS 94 (287)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~~d~dg~--l~v~~~~-~gi~~~~~~g-~~~~~-~~~~~~~~~~~~~l~~d~~g~l-~v~~~ 94 (287)
.|+...-...+.... +|+++|.=. +.++-.. .--+.+|.++ .++.. ....+..+ .-.+ +++++|.+ |.|..
T Consensus 57 aGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf-yGHG-vfs~dG~~LYATEn 133 (366)
T COG3490 57 AGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF-YGHG-VFSPDGRLLYATEN 133 (366)
T ss_pred CCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee-eccc-ccCCCCcEEEeecC
Confidence 344433333444455 788887543 4444322 2356677544 22221 22222111 1123 46778864 55532
Q ss_pred CCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCC-----------------
Q 023085 95 SSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESW----------------- 154 (287)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~----------------- 154 (287)
+ +....|-|-.||.. ..+.++ ......|+.+.+.+||++|.+++-+
T Consensus 134 d-------------fd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 134 D-------------FDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred C-------------CCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 2 12233444455543 223322 2233467888999999998888631
Q ss_pred CCEEEEEEecCCCCcceeEEe-ccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...+...+..++.+-+..... ...--....+.++.||++|.++..
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 012222221111110000000 000012467889999999999964
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.079 Score=48.04 Aligned_cols=140 Identities=16% Similarity=0.234 Sum_probs=84.6
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCCcE--EEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDGVE--NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g~~--~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
...+.++|+..++....++.++. ....+ .+... ......++++++.++|.+.++- ..+
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~d~~~l~s~-----------------s~D 224 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSPDGSYLLSG-----------------SDD 224 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccc--cccccceeeeEECCCCcEEEEe-----------------cCC
Confidence 45678899875555444555544 32211 11111 2234578899999999977752 234
Q ss_pred ceEEEEeC-CCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 114 GQLLKYDP-SSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 114 ~~v~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
..+..+|. +.+. ++.+.......+.++|+|+++ ++++.+..+.+..|++...+ -.+.+. .-.....++++.++|
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~--~~~~l~-~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGE--CVRKLK-GHSDGISGLAFSPDG 300 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCe--EEEeee-ccCCceEEEEECCCC
Confidence 56666666 3323 344445566778999999995 77777778889999976421 112222 122245678889999
Q ss_pred CEEEEEec
Q 023085 192 TFWIAIIK 199 (287)
Q Consensus 192 ~lwv~~~~ 199 (287)
++.++...
T Consensus 301 ~~l~s~s~ 308 (456)
T KOG0266|consen 301 NLLVSASY 308 (456)
T ss_pred CEEEEcCC
Confidence 76666643
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.023 Score=49.66 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=95.4
Q ss_pred EEEEecCCeEEEEE-CCceEEE---EeeCCccccCeEECCCCc-EEEE-eCCCceEEEc-cCC-cEEEeeecCCcccccc
Q 023085 7 IYTATRDGWIKRLQ-DGTWVNW---KFIDSQTLVGLTSTKEGH-LIIC-DNANGLHKVS-EDG-VENFLSYVNGSKLRFA 78 (287)
Q Consensus 7 l~~~~~~g~i~~~~-~~~~~~~---~~~~~~~~~~i~~d~dg~-l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~ 78 (287)
|.++..++.+..|. +|+.-.. ......|.-...+.++|. ..++ ....-++.+| .+. ++++.... +....++
T Consensus 228 llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~-g~e~~~~ 306 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY-GVEEKSM 306 (514)
T ss_pred EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC-Ccccchh
Confidence 44555666665555 4433221 112233442456778886 4443 3334588888 676 66664321 2222355
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEE
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l 158 (287)
....+..++.+.+. ....|.|+.+...++++..-..--....+++|+.|++.||++... +.+
T Consensus 307 e~FeVShd~~fia~-----------------~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-GeV 368 (514)
T KOG2055|consen 307 ERFEVSHDSNFIAI-----------------AGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-GEV 368 (514)
T ss_pred heeEecCCCCeEEE-----------------cccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-ceE
Confidence 56677777764442 223567887877766643222222345678899999988888754 589
Q ss_pred EEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 159 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|++..+ .-...|.....-....++...+|. |+++.+
T Consensus 369 ~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 369 YVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred EEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 99998654 223344322111233455566776 666654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.014 Score=51.14 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=89.0
Q ss_pred CCcEEEEe-cCCeEEEEE---CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
.+.|.+.. .++.|..|+ +++..+....-..|+..+.+..+|+-+++... .-|-..| ++| ...+...
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~------ 299 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD------ 299 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC------
Confidence 45555544 678888887 34443333333344447888889966555433 4466667 788 3333221
Q ss_pred cccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.-|+++.+.+++ +++++ +..++.|..+|..++++.. +...+...+.|.|-++|+ -+++.+
T Consensus 300 ~~~~cvkf~pd~~n~fl~-----------------G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-rFissS 361 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLV-----------------GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-RFISSS 361 (503)
T ss_pred CCceeeecCCCCCcEEEE-----------------ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-eEeeec
Confidence 356788888887 77775 3446789999998887432 445667788899988887 466666
Q ss_pred CCCEEEEEEecC
Q 023085 154 WKFRCRKYWLKG 165 (287)
Q Consensus 154 ~~~~l~~~~~~~ 165 (287)
....+..|+...
T Consensus 362 Ddks~riWe~~~ 373 (503)
T KOG0282|consen 362 DDKSVRIWENRI 373 (503)
T ss_pred cCccEEEEEcCC
Confidence 666777777543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.058 Score=43.30 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=74.1
Q ss_pred CeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
..+...|+.-+.+ ...+.++.+| .+| .+.+.. ....+|.+.+..+..+.++. ..
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg-----H~aqVNtV~fNeesSVv~Sg-----------------sf 121 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG-----HLAQVNTVRFNEESSVVASG-----------------SF 121 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeeeeccc-----ccceeeEEEecCcceEEEec-----------------cc
Confidence 4555556644433 2235688888 788 455432 24578899998888887752 22
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEE-EccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVA-LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
...+..+|=.+..+++++.-.....++. ++-.+ ...++.+-.+++..||+..++.. .-+ .....+.+.+.++|
T Consensus 122 D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l~--sDy---~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 122 DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTLS--SDY---FGHPITSVSFSKDG 195 (307)
T ss_pred cceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCCcEEEEEeecceee--hhh---cCCcceeEEecCCC
Confidence 3456666655555554432222223322 22223 35677677789999998543211 111 11124668888888
Q ss_pred CEEEEE
Q 023085 192 TFWIAI 197 (287)
Q Consensus 192 ~lwv~~ 197 (287)
+--++.
T Consensus 196 nc~La~ 201 (307)
T KOG0316|consen 196 NCSLAS 201 (307)
T ss_pred CEEEEe
Confidence 744444
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00057 Score=35.69 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.5
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
..|.|++++++|+ +||+++.+++|.+|
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 4689999997775 99999999999876
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.15 Score=48.30 Aligned_cols=143 Identities=11% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCCCC-cEEEEecCCeEEEEECCceEEE---EeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCcc
Q 023085 1 MDKNG-VIYTATRDGWIKRLQDGTWVNW---KFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSK 74 (287)
Q Consensus 1 ~d~~G-~l~~~~~~g~i~~~~~~~~~~~---~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~ 74 (287)
+|++| .|++...+|-|.+++.+.-... ....+.+..+++... +++..++..+-+.++. +.+ ...+.....
T Consensus 21 ~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rft--- 96 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFT--- 96 (933)
T ss_pred EcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeee---
Confidence 36677 4666667777888873222111 110112221344432 2556666556677776 554 222211110
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
--++.++++.+|...++. ..+-.|-.++..+.. ...+-........+.++|+++.|-++..
T Consensus 97 -lp~r~~~v~g~g~~iaag-----------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 97 -LPIRDLAVSGSGKMIAAG-----------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred -ccceEEEEecCCcEEEee-----------------cCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence 124678899888866642 223345555543332 2222233344567889999997666664
Q ss_pred CCCEEEEEEecCC
Q 023085 154 WKFRCRKYWLKGE 166 (287)
Q Consensus 154 ~~~~l~~~~~~~~ 166 (287)
.+.+.+|+++..
T Consensus 159 -dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 159 -DGKVQIWDLQDG 170 (933)
T ss_pred -CceEEEEEcccc
Confidence 578999998754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.13 Score=46.19 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=80.9
Q ss_pred eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEE--Ec-cC---C-cEEEeeecCCccccccceE
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHK--VS-ED---G-VENFLSYVNGSKLRFANDV 81 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~--~~-~~---g-~~~~~~~~~~~~~~~~~~l 81 (287)
.|+.++ .|+.+.+....+... ..++.|||+ |.++.... .++. ++ .. + .+.+.... .......
T Consensus 212 ~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~----~~~~~~p 286 (428)
T PRK01029 212 KIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA----FGTQGNP 286 (428)
T ss_pred eEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC----CCCcCCe
Confidence 466666 444444444444444 677889995 54443221 3444 34 32 2 33332211 1122356
Q ss_pred EEcCCCc-EEEE-cCCCCCCCcceeeeeeccCCCceEEEEeCC--CCeeEEeeccccccceEEEccCCCEEEEEeCC--C
Q 023085 82 VEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFANGVALSRDEDYVVVCESW--K 155 (287)
Q Consensus 82 ~~d~~g~-l~v~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~ 155 (287)
++.+||. |.++ +.. +...||.++.. +++...+...........++|||+.|+++... .
T Consensus 287 ~wSPDG~~Laf~s~~~----------------g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 287 SFSPDGTRLVFVSNKD----------------GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred EECCCCCEEEEEECCC----------------CCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCC
Confidence 7888986 4443 211 22357777653 23333333322333456799999988776543 2
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEE
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~ 197 (287)
..|+.+++++++ .+.+.. ...........+||+ |+++.
T Consensus 351 ~~I~v~dl~~g~---~~~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 351 RQICVYDLATGR---DYQLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cEEEEEECCCCC---eEEccC-CCCCccceEECCCCCEEEEEE
Confidence 468899876542 222221 122345577788886 44443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.17 Score=46.35 Aligned_cols=109 Identities=6% Similarity=-0.025 Sum_probs=63.9
Q ss_pred CeEECC-CCcEEEE-eCCCceEEEc-cCC-cE-----EEeeecCCccccccceEEEcCCC-cEEEEcCCCCCCCcceeee
Q 023085 37 GLTSTK-EGHLIIC-DNANGLHKVS-EDG-VE-----NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLD 106 (287)
Q Consensus 37 ~i~~d~-dg~l~v~-~~~~gi~~~~-~~g-~~-----~~~~~~~~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~ 106 (287)
++++.+ +++++++ .....|..++ +++ .. ++... .+ ....+..+++.+.+ .+.++
T Consensus 80 ~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~g-H~~~V~~l~f~P~~~~iLaS-------------- 143 (493)
T PTZ00421 80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QG-HTKKVGIVSFHPSAMNVLAS-------------- 143 (493)
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cC-CCCcEEEEEeCcCCCCEEEE--------------
Confidence 788888 6765554 3334455666 443 21 11111 11 12356778888865 55554
Q ss_pred eeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 107 ILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
+..++.|..+|..+++.... .........++|+|+++.|. +....+.|..||+..
T Consensus 144 ---gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLa-tgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 144 ---AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLC-TTSKDKKLNIIDPRD 199 (493)
T ss_pred ---EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEE-EecCCCEEEEEECCC
Confidence 22356788888776654332 22334467888999998544 445667899999754
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=45.41 Aligned_cols=222 Identities=9% Similarity=-0.017 Sum_probs=106.4
Q ss_pred CcEEEEecCCeEEEEE-C-CceEEEEee---CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCcc---
Q 023085 5 GVIYTATRDGWIKRLQ-D-GTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSK--- 74 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~-~~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~--- 74 (287)
+..|+....|.|++-. . ..++..... +.... .+....++..|+......+++-...| ++.+.......+
T Consensus 147 ~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~-~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~ 225 (398)
T PLN00033 147 KEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPV-LIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEETVSATLNR 225 (398)
T ss_pred CEEEEEcCceEEEEEcCCCCCceECccccCCCCCce-EEEEECCCceEEEeccceEEEECCCCCCceEcccccccccccc
Confidence 4567666666666655 2 344444332 12223 34444455666665443455554444 544311100000
Q ss_pred ------------ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeec-cccccceEE
Q 023085 75 ------------LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVAD-GFYFANGVA 140 (287)
Q Consensus 75 ------------~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~i~ 140 (287)
..+...+...++|.+++.. ..|.+++-...... +..+.. ......++.
T Consensus 226 ~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg------------------~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~ 287 (398)
T PLN00033 226 TVSSGISGASYYTGTFSTVNRSPDGDYVAVS------------------SRGNFYLTWEPGQPYWQPHNRASARRIQNMG 287 (398)
T ss_pred cccccccccceeccceeeEEEcCCCCEEEEE------------------CCccEEEecCCCCcceEEecCCCccceeeee
Confidence 0122345566677776632 23456665443222 233322 223345677
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCCCCc--ceeEEecc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHH
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGERKG--KLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 217 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 217 (287)
+.+++. +|++... +.+++-...+.... +....... ....+.++.+.+++++|++...
T Consensus 288 ~~~dg~-l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------------------ 347 (398)
T PLN00033 288 WRADGG-LWLLTRG-GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------------------ 347 (398)
T ss_pred EcCCCC-EEEEeCC-ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC------------------
Confidence 778887 6666543 44555432221100 11111101 1112456778889999999987
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEE-eCCEEEEEecCCCeEEEE
Q 023085 218 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~i~~~ 284 (287)
|.+.+-...|+........++. ....+.+.+ ++++.|+.+..|- |.++
T Consensus 348 -----------------G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~-il~~ 396 (398)
T PLN00033 348 -----------------GILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGV-LLRY 396 (398)
T ss_pred -----------------CcEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcE-EEEe
Confidence 3344443345443333322222 223455664 5699999986654 4443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.099 Score=43.71 Aligned_cols=166 Identities=15% Similarity=0.038 Sum_probs=87.4
Q ss_pred EEEEe--cCCeEEEEE-CC--ceEEEEeeCCccccCeEECCCC---cEEEEeCCCceEEEccCC-cEEEeeecCCccccc
Q 023085 7 IYTAT--RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEG---HLIICDNANGLHKVSEDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 7 l~~~~--~~g~i~~~~-~~--~~~~~~~~~~~~~~~i~~d~dg---~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~ 77 (287)
.|+++ .+-.|..|| .. +........+... .+.+++.- .|.-+...+-|...+ .| +..+.... .. -..
T Consensus 54 ~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~sdDG~i~iw~-~~~W~~~~slK-~H-~~~ 129 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGSDDGHIIIWR-VGSWELLKSLK-AH-KGQ 129 (362)
T ss_pred eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeecCCCcEEEEE-cCCeEEeeeec-cc-ccc
Confidence 35544 455777777 22 2222222233334 55565444 454444333344443 44 43332221 11 135
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
++++++.+.|.|-++..+ ++.+.-++.-.|+...+..-...+.-+.|+|+|...++.. .++
T Consensus 130 Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~ 190 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNK 190 (362)
T ss_pred cceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccE
Confidence 899999999998886422 3344445544455444433334455688999999877775 456
Q ss_pred EEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 158 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
|-.|.++...+.. .. ..+-.+.++.++..+.|.++...
T Consensus 191 i~i~q~d~A~v~~--~i--~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 191 IDIYQLDNASVFR--EI--ENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEEecccHhHhh--hh--hccccceeeeecCCceEEEecCC
Confidence 6666654322111 11 11224566777777778777765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.057 Score=42.85 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=72.1
Q ss_pred eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEe--CCCceEEEccCC--cEEEeeecCCccccccceEEEcCCC
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICD--NANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDG 87 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~--~~~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g 87 (287)
.|++++ +.....+......++..++..|+|+ +.+.. ....+..++..+ +..+. ....+.+..+++|
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~G 112 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPDG 112 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCCC
Confidence 456665 2223333222222344889999996 44443 223566776334 33321 1245789999999
Q ss_pred cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC-----CCEEEEEE
Q 023085 88 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-----KFRCRKYW 162 (287)
Q Consensus 88 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~-----~~~l~~~~ 162 (287)
++.++... +...|.|..+|.++.+..... .......++++|+|+++..+.+. .+++..|+
T Consensus 113 ~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 113 RFLVLAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CEEEEEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 87774211 123456888887644432211 22345678899999988777653 34455555
Q ss_pred ecC
Q 023085 163 LKG 165 (287)
Q Consensus 163 ~~~ 165 (287)
..+
T Consensus 178 ~~G 180 (194)
T PF08662_consen 178 FQG 180 (194)
T ss_pred ecC
Confidence 544
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.12 Score=47.71 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=38.2
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC----cc-------ccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QT-------LVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~----~~-------~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++..+.|+.+| +|+......... .+ ..++++. ++++++++....++.+| .+|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCC
Confidence 57899999888999999 665432221110 00 0133333 57899998767799999 788
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.15 Score=44.60 Aligned_cols=178 Identities=15% Similarity=0.182 Sum_probs=83.3
Q ss_pred CCCCcEEEEe-cCCeEEEEE-CCceEEEEeeCCccc-----cCeEECCCCc---EEEEeCC----C--ceEEEc-cCC-c
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTL-----VGLTSTKEGH---LIICDNA----N--GLHKVS-EDG-V 63 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~~~~~-----~~i~~d~dg~---l~v~~~~----~--gi~~~~-~~g-~ 63 (287)
|++..++++| ..++++.|+ +|+....... +.++ .++.+ .|+ |.+++.. . .+++++ .++ +
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPV-GRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-S-S-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecC-CCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 3445677887 778999999 7776554332 2222 02222 332 4444322 1 267777 456 6
Q ss_pred EEEeeecC--CccccccceEEE--cC-CCcEEEEcCCCCCCCcceeeeeeccCCCce--EEEEe-CCCCeeE----Eeec
Q 023085 64 ENFLSYVN--GSKLRFANDVVE--AS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQ--LLKYD-PSSNITT----LVAD 131 (287)
Q Consensus 64 ~~~~~~~~--~~~~~~~~~l~~--d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~-~~~~~~~----~~~~ 131 (287)
+.+..... ......+++++. ++ +|.+|+... ...|. -|++. ...+.+. +-..
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~----------------~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVN----------------GKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE----------------ETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEe----------------cCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 65532110 011233555554 33 466666311 12232 33332 2333321 1122
Q ss_pred cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc----CCCCCcceee--CC--CCCEEEEEec
Q 023085 132 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN----LPGAPDNINL--AP--DGTFWIAIIK 199 (287)
Q Consensus 132 ~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~--d~--~G~lwv~~~~ 199 (287)
....+.|++++.....||+++.. ..||+|+.+...-.....+... +.....||++ .. +|.|.+++..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred CCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 34578999999888899999974 6899999763221112222111 1123566776 33 4456666654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.12 Score=43.00 Aligned_cols=185 Identities=10% Similarity=0.105 Sum_probs=106.7
Q ss_pred ccCeEECCCCcEEEEeCC--CceEEEccCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 35 LVGLTSTKEGHLIICDNA--NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~--~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
.++++++|+-+-.++... ..|+.++..| +..++-. .+..|.+|..-.+|.+-+++.-
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----g~~DpE~Ieyig~n~fvi~dER--------------- 148 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----GFSDPETIEYIGGNQFVIVDER--------------- 148 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc----ccCChhHeEEecCCEEEEEehh---------------
Confidence 338899998875444334 3578887666 5554321 2456777888877776665411
Q ss_pred CCCceEEEEeCCCCeeEEee-----cc----ccccceEEEccCCCEEEEEeCCC-CEEEEEEecCCCCcc---------e
Q 023085 111 KPHGQLLKYDPSSNITTLVA-----DG----FYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGK---------L 171 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~~~~~~-----~~----~~~~~~i~~~~~~~~l~v~~~~~-~~l~~~~~~~~~~~~---------~ 171 (287)
...-.++.+++++....... .. -..-.|++++|+.+.+|++...+ -+|+.+......+.- .
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence 11223556666533222111 11 12236899999999999998643 345555422111100 0
Q ss_pred eEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE
Q 023085 172 ETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL 250 (287)
Q Consensus 172 ~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 250 (287)
..+.. ...++.+|+ .++|.|=+.. ...|..++.+|..+..+
T Consensus 229 ~~f~~----DvSgl~~~~~~~~LLVLS~E----------------------------------Sr~l~Evd~~G~~~~~l 270 (316)
T COG3204 229 DLFVL----DVSGLEFNAITNSLLVLSDE----------------------------------SRRLLEVDLSGEVIELL 270 (316)
T ss_pred ceEee----ccccceecCCCCcEEEEecC----------------------------------CceEEEEecCCCeeeeE
Confidence 11111 245677775 5677777766 24788999999887766
Q ss_pred ECCCC---cc--ccceEEEEEe-CCEEEEEec
Q 023085 251 VDPTG---QL--MSFVTSGLQV-DNHLYVISL 276 (287)
Q Consensus 251 ~~~~~---~~--~~~~~~~~~~-~g~l~i~~~ 276 (287)
....| +. .....+++++ +|.|||.+=
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred EeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 54333 21 2345688886 699999873
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.19 Score=45.15 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=66.0
Q ss_pred CeEECCCCc-E---EEEeCC--CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEE-cCCCCCCCcceeee
Q 023085 37 GLTSTKEGH-L---IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLD 106 (287)
Q Consensus 37 ~i~~d~dg~-l---~v~~~~--~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~-~~~~~~~~~~~~~~ 106 (287)
.....|||+ + |+.... ..|+..+ .+| .+.+... .+ .....++.+||+ |.++ +..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g----~~~~p~wSPDG~~Laf~s~~~----------- 252 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG----NQLMPTFSPRKKLLAFISDRY----------- 252 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC----CccceEECCCCCEEEEEECCC-----------
Confidence 567889985 2 243322 3589888 566 6665432 11 123457888885 4332 111
Q ss_pred eeccCCCceEEE--EeCCC---CeeEEeecc-ccccceEEEccCCCEEEEEeCCC--CEEEEEEecCCCCcceeEEeccC
Q 023085 107 ILEGKPHGQLLK--YDPSS---NITTLVADG-FYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 107 ~~~~~~~~~v~~--~~~~~---~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
+...++. ++..+ ++...+... .......+++|||+.|++..... ..|++++++... ...+.+. ..
T Consensus 253 -----g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt-~~ 325 (428)
T PRK01029 253 -----GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLT-KK 325 (428)
T ss_pred -----CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEec-cC
Confidence 1112332 34332 233333322 12224568999999776665322 368877764211 1122221 11
Q ss_pred CCCCcceeeCCCCC
Q 023085 179 PGAPDNINLAPDGT 192 (287)
Q Consensus 179 ~~~~~~i~~d~~G~ 192 (287)
..........+||+
T Consensus 326 ~~~~~~p~wSPDG~ 339 (428)
T PRK01029 326 YRNSSCPAWSPDGK 339 (428)
T ss_pred CCCccceeECCCCC
Confidence 12234567788886
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.047 Score=47.14 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=64.4
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEe--eccc-------------cccceEE
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLV--ADGF-------------YFANGVA 140 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~--~~~~-------------~~~~~i~ 140 (287)
.+.+|++.++|.+|+++.+... ......|++++++ |++ ..+ +..+ ....+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 5678999889999998644100 0112578999877 554 222 1111 1235789
Q ss_pred EccCCCEEEEEeCCC---------------CEEEEEEecCC-CCcceeEEecc------CCCCCcceeeCCCCCEEEEEe
Q 023085 141 LSRDEDYVVVCESWK---------------FRCRKYWLKGE-RKGKLETFAEN------LPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~---------------~~l~~~~~~~~-~~~~~~~~~~~------~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++|+|+.||++.... -+|++|+...+ .....-.|... ....+..++.-++++++|-..
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999888776432 25677776531 11111122211 122355566677888888776
Q ss_pred c
Q 023085 199 K 199 (287)
Q Consensus 199 ~ 199 (287)
.
T Consensus 234 ~ 234 (326)
T PF13449_consen 234 D 234 (326)
T ss_pred c
Confidence 5
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.14 Score=41.53 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=61.8
Q ss_pred cccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE--eeccccccceEEEccCCCEEEEEe
Q 023085 76 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 76 ~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
..++.++..++ +.|+.+| .++.|+.+|........ ++........+++.|||..|..++
T Consensus 125 spVn~vvlhpnQteLis~d------------------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGD------------------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred CCcceEEecCCcceEEeec------------------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec
Confidence 35678888886 5677754 34678888876553322 234445667889999999655555
Q ss_pred CCCCEEEEEEecCCC-CcceeEEec--cCCCCCcceeeCCCCCEEEEEec
Q 023085 153 SWKFRCRKYWLKGER-KGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..++++++++-..+ .+...+... .-.++..-..+.+++++..++..
T Consensus 187 -nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 187 -NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred -CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 56778888875432 122222111 11123333556788877666654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.042 Score=46.02 Aligned_cols=140 Identities=12% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCCCC-cEEEEecCCeEEEEE--CCceEEE---------EeeCCccccCeEECCCCcEEEEeCCCc---eEEEccCC--c
Q 023085 1 MDKNG-VIYTATRDGWIKRLQ--DGTWVNW---------KFIDSQTLVGLTSTKEGHLIICDNANG---LHKVSEDG--V 63 (287)
Q Consensus 1 ~d~~G-~l~~~~~~g~i~~~~--~~~~~~~---------~~~~~~~~~~i~~d~dg~l~v~~~~~g---i~~~~~~g--~ 63 (287)
|.+|| .|..|+-+|-|-.|| +|+.+.- ........ .|.+.+|-.+..+....| +|++ .+| +
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIKvWri-~tG~Cl 298 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIKVWRI-ETGQCL 298 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEEEEEE-ecchHH
Confidence 45777 455666888888888 6655421 11122223 566666655544432333 3443 344 4
Q ss_pred EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeeccccccceEEEc
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALS 142 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~ 142 (287)
+.+... .-..+.++.+.+|+.-.++. .-+..+-.-..++|+. +-+-...++.+...|.
T Consensus 299 RrFdrA----HtkGvt~l~FSrD~SqiLS~-----------------sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 299 RRFDRA----HTKGVTCLSFSRDNSQILSA-----------------SFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred HHhhhh----hccCeeEEEEccCcchhhcc-----------------cccceEEEeccccchhHHHhcCccccccceEEc
Confidence 443211 11246778888877644431 1122233233455542 2233445677888899
Q ss_pred cCCCEEEEEeCCCCEEEEEEec
Q 023085 143 RDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+||..+.-+. ..+.+..|+.+
T Consensus 358 ~dG~~iisaS-sDgtvkvW~~K 378 (508)
T KOG0275|consen 358 DDGHHIISAS-SDGTVKVWHGK 378 (508)
T ss_pred CCCCeEEEec-CCccEEEecCc
Confidence 9998665554 45667777754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.44 Score=46.44 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=85.9
Q ss_pred cEEEEecCCeEEEEE--CCceE-EEEeeCCccccCeEECC-CCcEEEEeCCC-ceEEEc-cCC--cEEEeeecCCccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~-~~~~~~~~~~~~i~~d~-dg~l~v~~~~~-gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
.|..++.+|.|..|+ +++.. .+........ ++++.+ ++.++++.... .|..++ .++ ...+.. ...
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~ 619 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KAN 619 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCC
Confidence 344555788888888 33322 2222223334 788885 67766654443 466666 555 333321 123
Q ss_pred cceEEEc-CCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 78 ANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 78 ~~~l~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
+..+.+. ++|.++++ +...+.|..||..+.. +..+.........+.|. +++.++.+ +.
T Consensus 620 v~~v~~~~~~g~~lat-----------------gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~-s~ 680 (793)
T PLN00181 620 ICCVQFPSESGRSLAF-----------------GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS-ST 680 (793)
T ss_pred eEEEEEeCCCCCEEEE-----------------EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE-EC
Confidence 4556654 45666664 2345678888876443 22222222234456665 56644444 45
Q ss_pred CCEEEEEEecCCCC----cceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.|..||+..... .....+. .-......++++++|.+.++...
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence 67788888753210 1111221 11123455778888875555443
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.094 Score=46.05 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=82.2
Q ss_pred CeEECCCCcEEEEeCCC-------------c-eEEEccCC-cEEEeeecC----CccccccceEEEcCC-CcEEEEcCCC
Q 023085 37 GLTSTKEGHLIICDNAN-------------G-LHKVSEDG-VENFLSYVN----GSKLRFANDVVEASD-GSLYFTVSSS 96 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~-------------g-i~~~~~~g-~~~~~~~~~----~~~~~~~~~l~~d~~-g~l~v~~~~~ 96 (287)
.|++++||+|||+.... | ++++++.+ +..-.+... ...+..|.+++.++. |.||+++.+.
T Consensus 181 ~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 181 RLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred cEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 58999999999996433 1 33444333 111111100 112456789999997 9999997664
Q ss_pred CCCCcceeeeeeccCCCceE--EEE-------eCCC---Cee-EE------eeccccccceEEEccCC------CEEEEE
Q 023085 97 KYLPHEYCLDILEGKPHGQL--LKY-------DPSS---NIT-TL------VADGFYFANGVALSRDE------DYVVVC 151 (287)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~v--~~~-------~~~~---~~~-~~------~~~~~~~~~~i~~~~~~------~~l~v~ 151 (287)
+-. .. .+++.....|.. |-+ ++.. ... .. .......|.|++|.... ..++|+
T Consensus 261 d~~-~~--~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~ 337 (399)
T COG2133 261 DAL-RG--PDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVG 337 (399)
T ss_pred Ccc-cC--cccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEE
Confidence 110 00 000100011111 111 0000 000 00 01112345788876421 248888
Q ss_pred eCCCCEEEEEEecCCCCcceeEEec-cCCCCCcceeeCCCCCEEEEEec
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.-.+-.+.+.+.+++.......+.. ...++|.++++.+||.|++++..
T Consensus 338 ~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 338 AHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred eecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 7655556666555431122223332 23478999999999999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.081 Score=49.07 Aligned_cols=146 Identities=10% Similarity=0.034 Sum_probs=83.1
Q ss_pred EeeCCccccCeEECCCCcEEEEeCCCc---eEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcce
Q 023085 28 KFIDSQTLVGLTSTKEGHLIICDNANG---LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 103 (287)
Q Consensus 28 ~~~~~~~~~~i~~d~dg~l~v~~~~~g---i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~ 103 (287)
......|++.+.+.|-|..+++....+ +|-.+... .+.+. .++..+.++.++++.....+.
T Consensus 489 y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-----ghlsDV~cv~FHPNs~Y~aTG---------- 553 (707)
T KOG0263|consen 489 YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-----GHLSDVDCVSFHPNSNYVATG---------- 553 (707)
T ss_pred ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-----ccccccceEEECCcccccccC----------
Confidence 334445554566667665555432223 33332222 22221 234567788899887755542
Q ss_pred eeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCC
Q 023085 104 CLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 182 (287)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (287)
..+..|-.||..+|. ++.+.........++++|.|++|--.+ ..+.|..||+..... ...+... .+..
T Consensus 554 -------SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~I~iWDl~~~~~--v~~l~~H-t~ti 622 (707)
T KOG0263|consen 554 -------SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDGLIKIWDLANGSL--VKQLKGH-TGTI 622 (707)
T ss_pred -------CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCCcEEEEEcCCCcc--hhhhhcc-cCce
Confidence 234456666655555 444555556667899999998655554 356788888765321 1111111 3346
Q ss_pred cceeeCCCCCEEEEEec
Q 023085 183 DNINLAPDGTFWIAIIK 199 (287)
Q Consensus 183 ~~i~~d~~G~lwv~~~~ 199 (287)
+.+.+..+|++.++...
T Consensus 623 ~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 623 YSLSFSRDGNVLASGGA 639 (707)
T ss_pred eEEEEecCCCEEEecCC
Confidence 77889999988887755
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.041 Score=51.50 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=82.5
Q ss_pred EEEEecCCeEEEEE--CCceE-EEE--eeCCccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccce
Q 023085 7 IYTATRDGWIKRLQ--DGTWV-NWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFAND 80 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~-~~~--~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~ 80 (287)
..+|+..|.|-+|| .|..+ .+. .....++.+++.|.-+++.++....|++.+- -.+.........+ ..+..
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~---~~~~~ 539 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG---SSITG 539 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---CCcce
Confidence 45677889999999 44332 231 1223344499999999999998778988876 2331111111111 23445
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCR 159 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~ 159 (287)
+.......+++. .-..-.+..+|..+.++.+. .......+.++|+|||+.|..++ ....|.
T Consensus 540 iv~hr~s~l~a~-----------------~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr 601 (910)
T KOG1539|consen 540 IVYHRVSDLLAI-----------------ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIR 601 (910)
T ss_pred eeeeehhhhhhh-----------------hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEE
Confidence 555544443331 11233577777765554332 23345568899999999666554 567899
Q ss_pred EEEecC
Q 023085 160 KYWLKG 165 (287)
Q Consensus 160 ~~~~~~ 165 (287)
.||+..
T Consensus 602 ~wDlpt 607 (910)
T KOG1539|consen 602 TWDLPT 607 (910)
T ss_pred EEeccC
Confidence 999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.14 Score=48.56 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=84.9
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCcccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFA 78 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~~ 78 (287)
+.+..++.++-|.+|. .+....+...-..|...++++.+|...++... .+|-+++ .+. ...+... -..+
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-----~apV 141 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-----DAPV 141 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-----CCce
Confidence 3567777888888888 33322111111122327788889976665433 4666666 555 3343222 1346
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc----c-----cceEEEccCCCEEE
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY----F-----ANGVALSRDEDYVV 149 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~-----~~~i~~~~~~~~l~ 149 (287)
.+|.+++++.+.... ...|.|..|+.+++.+......+. . -.-++|+|++..+.
T Consensus 142 l~l~~~p~~~fLAvs-----------------s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVS-----------------SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred eeeeEcCCCCEEEEE-----------------ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 789999999987752 346789999988776654433221 1 13467999977666
Q ss_pred EEeCCCCEEEEEEecC
Q 023085 150 VCESWKFRCRKYWLKG 165 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~ 165 (287)
+... .+.+..|+.++
T Consensus 205 ~~~~-d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 205 VPPV-DNTVKVYSRKG 219 (933)
T ss_pred eecc-CCeEEEEccCC
Confidence 6654 57788888764
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.18 Score=43.80 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=82.9
Q ss_pred CccccCeEECCCCcEEEEeCC---CceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeee
Q 023085 32 SQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~---~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~ 107 (287)
+..+ -+.+.++|+..++... ..|+.+..++ ++..... .+ ....+..++..||.+-.++...
T Consensus 225 dEVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vg-h~~~V~yi~wSPDdryLlaCg~------------ 289 (519)
T KOG0293|consen 225 DEVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VG-HSQPVSYIMWSPDDRYLLACGF------------ 289 (519)
T ss_pred CcEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ec-ccCceEEEEECCCCCeEEecCc------------
Confidence 3445 6777788875554322 2455555555 3332221 11 1234556788888887776422
Q ss_pred eccCCCceEEEEeCCCCeeEEee-cc-ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcce
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVA-DG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI 185 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (287)
...+..+|.++|...... .. ...+...++-|||..+ |+.+....+..++.++......+.... .....+
T Consensus 290 -----~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~dr~i~~wdlDgn~~~~W~gvr~---~~v~dl 360 (519)
T KOG0293|consen 290 -----DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPDRTIIMWDLDGNILGNWEGVRD---PKVHDL 360 (519)
T ss_pred -----hHheeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCCCcEEEecCCcchhhccccccc---ceeEEE
Confidence 234777787777755432 22 2345667899999864 454556789999998765443332211 134578
Q ss_pred eeCCCCC-EEEEEec
Q 023085 186 NLAPDGT-FWIAIIK 199 (287)
Q Consensus 186 ~~d~~G~-lwv~~~~ 199 (287)
++..||+ +++.+..
T Consensus 361 ait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVD 375 (519)
T ss_pred EEcCCCcEEEEEecc
Confidence 8888885 4444433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.29 Score=41.76 Aligned_cols=215 Identities=12% Similarity=0.057 Sum_probs=110.3
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCccccccce
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~~~~~~~~ 80 (287)
|.+|+.+|.++.|+ ++...+.......+...=-+-|||+..++.+..| |...+ .+| +..+... .+. ....
T Consensus 163 llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~-e~~---~~~~ 238 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA-EGL---ELPC 238 (399)
T ss_pred EEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc-ccC---cCCc
Confidence 45666888888888 3333333333333321223567886544433444 55566 566 3333211 111 1123
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc------------ccccceEEEccCCCEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFANGVALSRDEDYV 148 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~l 148 (287)
+.....+.+.+. +...+.++.++..+|++.....+ ......+.++.+-. |
T Consensus 239 ~~~~~~~~~~~~-----------------g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L 300 (399)
T KOG0296|consen 239 ISLNLAGSTLTK-----------------GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-L 300 (399)
T ss_pred cccccccceeEe-----------------ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-h
Confidence 344444544442 11223344444444444333221 01112223333332 4
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
..+....++|..||... .+++....... ...-+.......|+.++..
T Consensus 301 ~A~G~vdG~i~iyD~a~---~~~R~~c~he~-~V~~l~w~~t~~l~t~c~~----------------------------- 347 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAA---STLRHICEHED-GVTKLKWLNTDYLLTACAN----------------------------- 347 (399)
T ss_pred hhcccccceEEEEeccc---chhheeccCCC-ceEEEEEcCcchheeeccC-----------------------------
Confidence 44555668899999753 33333332111 1223445555567777765
Q ss_pred ccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|..+|.. |+.+..|+... -.+..+... +.++-++.-.-+...+|..
T Consensus 348 ------g~v~~wDaRtG~l~~~y~GH~----~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 348 ------GKVRQWDARTGQLKFTYTGHQ----MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ------ceEEeeeccccceEEEEecCc----hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 578888876 77788887533 235666554 7888888877777777765
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.34 Score=42.34 Aligned_cols=135 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred eEEEEeCCCCeeEEeec-------cccccceEEEc--c-CCCEEEEEeCCCCEEEEEEecCCCCc-----ceeEEeccCC
Q 023085 115 QLLKYDPSSNITTLVAD-------GFYFANGVALS--R-DEDYVVVCESWKFRCRKYWLKGERKG-----KLETFAENLP 179 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~-------~~~~~~~i~~~--~-~~~~l~v~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~ 179 (287)
.+|++++.++.++.+.. ....+.|+|+. + +|+.-.+.....+.+..|.+.....+ ..+.|. .+
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CC
Confidence 58899987787766532 22347899863 3 35532333344577888877521111 223332 34
Q ss_pred CCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--C-cEEEEEECCCC
Q 023085 180 GAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--G-TIIRNLVDPTG 255 (287)
Q Consensus 180 ~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g-~~~~~~~~~~~ 255 (287)
+-+.+++.|. .|.||++... .+|.+|+.+ + ..-..+....+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~~g 252 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASADG 252 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEBSS
T ss_pred CcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeecccc
Confidence 4578888876 6899999986 488888643 2 22222221122
Q ss_pred -ccccceEEEEEe-----CCEEEEEecCCCeEEEEeC
Q 023085 256 -QLMSFVTSGLQV-----DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 256 -~~~~~~~~~~~~-----~g~l~i~~~~~~~i~~~~~ 286 (287)
.....+.++... .|.|.+++...+...+|+-
T Consensus 253 ~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 253 DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 234556555552 3689999999998888874
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.4 Score=42.77 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=80.8
Q ss_pred CcEEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccce
Q 023085 5 GVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~ 80 (287)
+.||+||..+.|.+=+ .+.+..........+.+++..++-.++++....+..++- ... ++.+.. ....+
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~-------d~~~~ 412 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIE-------DPAEC 412 (626)
T ss_pred CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEec-------CceeE
Confidence 4699999766676655 445544443333333389999988888775444444433 333 333321 13356
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRK 160 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~ 160 (287)
+.+++.|.+-+ ++..|..+.+|.++..+..+-.....-+-+.++|+|.++-+.. .++.|+.
T Consensus 413 ~~fhpsg~va~------------------Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyi 473 (626)
T KOG2106|consen 413 ADFHPSGVVAV------------------GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYI 473 (626)
T ss_pred eeccCcceEEE------------------eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEE
Confidence 77888885544 3445667777776544433333333445667899998766664 5677888
Q ss_pred EEecC
Q 023085 161 YWLKG 165 (287)
Q Consensus 161 ~~~~~ 165 (287)
|.++.
T Consensus 474 y~Vs~ 478 (626)
T KOG2106|consen 474 YRVSA 478 (626)
T ss_pred EEECC
Confidence 88763
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.33 Score=41.92 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=43.8
Q ss_pred ccceEEEccCCCEEEEEeCCC------CEEEEEEecCCCCcce---eEEe------c--cCCCCCcceeeCCCCC-EEEE
Q 023085 135 FANGVALSRDEDYVVVCESWK------FRCRKYWLKGERKGKL---ETFA------E--NLPGAPDNINLAPDGT-FWIA 196 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~------~~l~~~~~~~~~~~~~---~~~~------~--~~~~~~~~i~~d~~G~-lwv~ 196 (287)
.+.+|++.+++. +||++... ..|++|+.++...... ..+. . ..+....+|++.++|+ ||++
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 567899966665 99999998 9999999875322221 1110 0 1222457799999998 9999
Q ss_pred Eec
Q 023085 197 IIK 199 (287)
Q Consensus 197 ~~~ 199 (287)
...
T Consensus 165 ~E~ 167 (326)
T PF13449_consen 165 MES 167 (326)
T ss_pred ECc
Confidence 976
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.17 Score=45.08 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=65.7
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec---cccccceEEEccCCCEEEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~v~ 151 (287)
.+.+......+||+-.+. +.....|-.+|..+-..+..+. ....=+.++++||.+ +.++
T Consensus 465 dnyiRSckL~pdgrtLiv-----------------GGeastlsiWDLAapTprikaeltssapaCyALa~spDak-vcFs 526 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIV-----------------GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFS 526 (705)
T ss_pred ccceeeeEecCCCceEEe-----------------ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeee
Confidence 345666667778864442 2223455566654222221111 112225788999998 5555
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcc---eeeCCCC-CEEEEEeccchhHHHHhh
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDG-TFWIAIIKLDARRMKILN 209 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~d~~G-~lwv~~~~~~~~~~~~~~ 209 (287)
....+.|.+||+.+.. ..+ .+.|.++| |.+..+| +||.+...++.+.|++-.
T Consensus 527 ccsdGnI~vwDLhnq~--~Vr----qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 527 CCSDGNIAVWDLHNQT--LVR----QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred eccCCcEEEEEcccce--eee----cccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 5566789999985431 122 33445555 5556788 799999998888888743
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.59 Score=43.45 Aligned_cols=103 Identities=6% Similarity=0.020 Sum_probs=62.0
Q ss_pred cccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--e-------EEeeccccccceEEEccCC
Q 023085 76 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--T-------TLVADGFYFANGVALSRDE 145 (287)
Q Consensus 76 ~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-------~~~~~~~~~~~~i~~~~~~ 145 (287)
..+.++++.++ +.+.++. ..++.|..++..++. . ..+.........++|+|++
T Consensus 75 ~~V~~lafsP~~~~lLASg-----------------S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASG-----------------SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred CCEEEEEEcCCCCCEEEEE-----------------eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 46778888886 6666652 234566666654321 1 1122223345678899998
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.++....+.|..||+...+. ...+. .......++++++|++.+++..
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~--~~~i~--~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKR--AFQIN--MPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcE--EEEEe--cCCcEEEEEECCCCCEEEEEec
Confidence 86666666678899999864321 11111 1234567888999998876654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.45 Score=41.80 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=61.0
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCC-ccccc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNG-SKLRF 77 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~-~~~~~ 77 (287)
.+|+||+++.+|.+++++ +|+......... ....+-.+-.++.+|+.+...-++.++ .+|...+...... .....
T Consensus 110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 479999999999999999 566544333333 011133445688999986445689998 5673222211111 11111
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 127 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (287)
..... ..++.+|++..+ . .+.++.+++.+|...
T Consensus 190 ~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~~ 222 (370)
T COG1520 190 YGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTLK 222 (370)
T ss_pred ccCce-eecceEEEecCC---------------C-cceEEEEEccCCcEe
Confidence 11222 557888885321 0 235777777666544
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.36 Score=40.54 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG 62 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g 62 (287)
.+-| .|-+|-.+|+|..|+ +-+..++...--.|+.+++..+||+..++... .-+-.+| .+|
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 3456 355667899999998 43333333333345558899999998877544 3344455 444
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=45.60 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=91.8
Q ss_pred ecCCeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEe-CCCceEEEc-cCC--cEEEeeecCCccccccceEEE
Q 023085 11 TRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICD-NANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVE 83 (287)
Q Consensus 11 ~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~-~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~ 83 (287)
+.+.-|--|| +|+...-......|. .+.+.||+ +++++. ..+.|..+| +.+ +..+ +..+..++.+.+
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F 350 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITF 350 (503)
T ss_pred ecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEE
Confidence 3444455555 454433333334455 77788888 776664 335688888 777 3333 223457788888
Q ss_pred cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eecccc-ccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 84 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFY-FANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 84 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
-++|.-+|+.+. .+.+..++-+...... ....-. .---+...|.+. .+.+.+..+.|..|
T Consensus 351 ~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 351 VDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIF 412 (503)
T ss_pred ccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEE
Confidence 888888886322 3344444433221111 111111 112345667776 77777888889988
Q ss_pred EecCC-CCcceeEEec-cCCCCCcceeeCCCCCEEEEEec
Q 023085 162 WLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 162 ~~~~~-~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
....+ ...+.+.|.. ...|++..+.+.+||...++...
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 86432 1122222321 24466777778888866655554
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.23 Score=43.99 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCCcEEEEecCCeEEEEE-CCc--eEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCC--cE--EEeeecCCccc
Q 023085 3 KNGVIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VE--NFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~~~--~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~--~~~~~~~~~~~ 75 (287)
++|.+++....|.+++-. +|. ++....+......++...++|.+|++....++++-..+| .+ .+.........
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~ 327 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRG 327 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCC
Confidence 456666666667666654 443 344443333333377888999999998666666654454 21 33222111112
Q ss_pred cccceEEEcCCCcEEEE
Q 023085 76 RFANDVVEASDGSLYFT 92 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~ 92 (287)
..+.++...+++++|++
T Consensus 328 ~~l~~v~~~~d~~~~a~ 344 (398)
T PLN00033 328 FGILDVGYRSKKEAWAA 344 (398)
T ss_pred cceEEEEEcCCCcEEEE
Confidence 34677888889999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.66 Score=43.15 Aligned_cols=111 Identities=2% Similarity=-0.131 Sum_probs=62.4
Q ss_pred CeEECCC-CcEEEEeCC-CceEEEc-cCC-c--EEEee--ecCCccccccceEEEcCCCcEE-EEcCCCCCCCcceeeee
Q 023085 37 GLTSTKE-GHLIICDNA-NGLHKVS-EDG-V--ENFLS--YVNGSKLRFANDVVEASDGSLY-FTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 37 ~i~~d~d-g~l~v~~~~-~gi~~~~-~~g-~--~~~~~--~~~~~~~~~~~~l~~d~~g~l~-v~~~~~~~~~~~~~~~~ 107 (287)
.+++.++ +++.++... ..|..++ +++ . ..+.. .........+..+++++++... ++
T Consensus 79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS--------------- 143 (568)
T PTZ00420 79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS--------------- 143 (568)
T ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE---------------
Confidence 7888886 565555333 3455555 433 1 11100 0001112457788999887644 33
Q ss_pred eccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
+..++.|..+|..+++.............+.|+++|+.| ++....+.|..||+..
T Consensus 144 --gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 144 --SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK 198 (568)
T ss_pred --EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence 123467777887766533222222345678899999855 4444567899999754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.093 Score=46.59 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=92.3
Q ss_pred CCC-cEEEEecCCeEEEEE-CCceEEEE----eeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCC
Q 023085 3 KNG-VIYTATRDGWIKRLQ-DGTWVNWK----FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNG 72 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~-~~~~~~~~----~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~ 72 (287)
+|| .|.+|.....|..|| .....++. .....-+ .+++.+|-+|-++--. +.|.++| .+. ++.+....
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht-- 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-- 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--
Confidence 455 466666656666666 21111111 1112235 7888899988766433 4577777 665 44443222
Q ss_pred ccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-cccceEEEccCCCEEEE
Q 023085 73 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVV 150 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~l~v 150 (287)
....+|.+..+| +||- +..++.|-++|..++..- ....+ +..-.+...|.++.|.|
T Consensus 552 ---DGascIdis~dGtklWT------------------GGlDntvRcWDlregrql-qqhdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 552 ---DGASCIDISKDGTKLWT------------------GGLDNTVRCWDLREGRQL-QQHDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ---CCceeEEecCCCceeec------------------CCCccceeehhhhhhhhh-hhhhhhhhheecccCCCccceee
Confidence 244678888888 5777 334567888988654321 11111 22334556688886666
Q ss_pred EeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 151 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.-. ++.++.....+++ +.. ...-....-.+.+..-|+.|+++..
T Consensus 610 GMe-ns~vevlh~skp~--kyq--lhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 610 GME-NSNVEVLHTSKPE--KYQ--LHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ecc-cCcEEEEecCCcc--cee--ecccccEEEEEEecccCceeeecCc
Confidence 644 4456665543321 111 1111223445777888999999976
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.18 Score=43.26 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=65.4
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...++.+.+.+|++...+ .+ -+..|-.++..+|++-. +-......+.+++++|.+ |.|+.+
T Consensus 367 q~lVn~V~fSPd~r~IAS-aS----------------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~S 428 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIAS-AS----------------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGS 428 (480)
T ss_pred hhheeeEEECCCccEEEE-ee----------------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcC
Confidence 346888999999885553 22 23456666767776433 333556678899999987 888888
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCccee-e--CCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNIN-L--APDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~--d~~G~lwv~~~~ 199 (287)
....|-.|++..++ ...+++|..+.+. + .+||..-.+...
T Consensus 429 kDsTLKvw~V~tkK------l~~DLpGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKK------LKQDLPGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred CCceEEEEEeeeee------ecccCCCCCceEEEEEecCCCceeecCCC
Confidence 88899999975432 1224555444433 3 478876655544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.58 Score=40.90 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCCC-cEEEEec---CCeEEEEE--CCceEEEEeeCC-ccccCeEECCCC-cEEEEeCCCceEEEc-cCC-cEEEeeecC
Q 023085 2 DKNG-VIYTATR---DGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEG-HLIICDNANGLHKVS-EDG-VENFLSYVN 71 (287)
Q Consensus 2 d~~G-~l~~~~~---~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g-~~~~~~~~~ 71 (287)
..|| .|.|++. ...++.++ +++.++....++ ... +..+.++. .+|..-..+.|.+++ .++ .+.+.....
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 3567 5666652 45788888 788888877543 334 55555655 454333356899999 776 545433222
Q ss_pred CccccccceEEEcCCCcEEEEcCCC--CCC-Cc--ceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSS--KYL-PH--EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 143 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~--~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~ 143 (287)
+-. .. -..+++++++.++...-. ++. +. .+..++..+....+|+.+|.++|+.+.+........-+.++|
T Consensus 123 ~~~-g~-gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 123 DWK-GY-GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp TEE-EE-EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred ccc-cc-cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 110 01 122345577766542111 110 11 122334445556789999999999887755433333334444
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.061 Score=49.40 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=46.7
Q ss_pred ccccceEEEccCCCEEEEEeCCCC-------------------EEEEEEecCCC----CcceeEEecc------------
Q 023085 133 FYFANGVALSRDEDYVVVCESWKF-------------------RCRKYWLKGER----KGKLETFAEN------------ 177 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~~~-------------------~l~~~~~~~~~----~~~~~~~~~~------------ 177 (287)
+..|.++.++|....+|++.+... .|++++.++.. ..+...+...
T Consensus 349 f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~ 428 (524)
T PF05787_consen 349 FDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSN 428 (524)
T ss_pred ccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccC
Confidence 345789999998778999976554 78888876431 1122222211
Q ss_pred -----CCCCCcceeeCCCCCEEEEEecc
Q 023085 178 -----LPGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 178 -----~~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
.-..|+||++|++|+|||++-..
T Consensus 429 ~~~~~~f~sPDNL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 429 KCDDNGFASPDNLAFDPDGNLWIQEDGG 456 (524)
T ss_pred cccCCCcCCCCceEECCCCCEEEEeCCC
Confidence 11369999999999999999763
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.016 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=30.7
Q ss_pred ccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 131 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 131 ~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.....|+++++++.++.||+++.....|.++++++
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 45678999999999999999999999999998765
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.4 Score=37.99 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEE
Q 023085 41 TKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 118 (287)
Q Consensus 41 d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 118 (287)
|..+.-+.++ ..|++++ .+. ...+..... ..+.+++..++|+-++.-. +.....+..
T Consensus 29 ~~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~---------------g~~~~~v~l 87 (194)
T PF08662_consen 29 DKSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIY---------------GSMPAKVTL 87 (194)
T ss_pred ccCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEE---------------ccCCcccEE
Confidence 3444444433 2577776 444 444422211 2378899999987543211 112235666
Q ss_pred EeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEE
Q 023085 119 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196 (287)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~ 196 (287)
+|.+...+..+. ....+.+.++|+|+.+.++... .+.|..||.... ..+..........++.+++|+..++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence 666533343332 2345789999999988888754 346888886521 1222112223566888999998887
Q ss_pred Eec
Q 023085 197 IIK 199 (287)
Q Consensus 197 ~~~ 199 (287)
...
T Consensus 161 a~t 163 (194)
T PF08662_consen 161 ATT 163 (194)
T ss_pred EEe
Confidence 765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.42 Score=42.05 Aligned_cols=207 Identities=15% Similarity=0.114 Sum_probs=104.1
Q ss_pred cccCeEECCCCcEEEEe-CCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 34 TLVGLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 34 ~~~~i~~d~dg~l~v~~-~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
|++.++.+++|.+.++. ....||... .+| +..... ..-..++.+.+..||..+|+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~----aHYQ~ITcL~fs~dgs~iiTg----------------- 141 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS----AHYQSITCLKFSDDGSHIITG----------------- 141 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH----hhccceeEEEEeCCCcEEEec-----------------
Confidence 34478888999877775 445688887 777 332211 112467889999999999862
Q ss_pred CCCceEEEEeC------CC-Ce---eEEeeccccccceEEEccCC--CEEEEEeCCCCEEEEEEecCCCCcceeEEeccC
Q 023085 111 KPHGQLLKYDP------SS-NI---TTLVADGFYFANGVALSRDE--DYVVVCESWKFRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 111 ~~~~~v~~~~~------~~-~~---~~~~~~~~~~~~~i~~~~~~--~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
..++.|..|.. .. .. +..+....-....+.+++-| ..+|-+. ....+..||+..+.+- ..+ ..
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL--lti--~f 216 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL--LTI--TF 216 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee--EEE--ec
Confidence 22344444421 10 01 11111111112233333321 2355543 4567788888654221 111 23
Q ss_pred CCCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCcc
Q 023085 179 PGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL 257 (287)
Q Consensus 179 ~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~ 257 (287)
+..+..+++|+-. .+|+++..+..-+..+..-.++ ..+.....+++++..+..+....+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~------------------~~~v~~k~~~~~~t~~~~~~Gh~~-- 276 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ------------------SAGVNQKGRHEENTQINVLVGHEN-- 276 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcc------------------cccccccccccccceeeeeccccC--
Confidence 3457789999844 6888886632111111000000 000011122344445555543222
Q ss_pred ccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 258 MSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 258 ~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
-..++++... ||+|.+.+-..+.|.+-|+
T Consensus 277 ~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 277 ESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred CcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 1478888886 7777776666666655543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.7 Score=40.05 Aligned_cols=171 Identities=11% Similarity=0.117 Sum_probs=80.8
Q ss_pred CCcEEEEecCCeEEEEE-CC-ceEEEEeeC---CccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCcccc
Q 023085 4 NGVIYTATRDGWIKRLQ-DG-TWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~-~~~~~~~~~---~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~ 76 (287)
+.+.|+....|.|++=. .| .++...... ..+...+.+.+ +..|++.....|++-...| ++.+.... .. ..
T Consensus 56 ~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~-~~-~~ 132 (334)
T PRK13684 56 PNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSE-KL-PG 132 (334)
T ss_pred CCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCc-CC-CC
Confidence 34555444566777655 33 344332211 11222555553 4577775444466654434 55542110 01 12
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+..+....++.+|+. ...+.|++-+.....++.+... ....+.+.+.+++. +++.. ..
T Consensus 133 ~~~~i~~~~~~~~~~~------------------g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g-~~ 192 (334)
T PRK13684 133 SPYLITALGPGTAEMA------------------TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVS-SR 192 (334)
T ss_pred CceEEEEECCCcceee------------------eccceEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEe-CC
Confidence 3344444444555653 1345677665443344443322 22345677777765 33333 23
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.+++-..++. ...............++++.++|++|+....
T Consensus 193 G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 193 GNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred ceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 45555321221 1121121112224567888888999998765
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.21 E-value=1 Score=41.69 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=39.3
Q ss_pred CCcEEEEeCCCceEEEc-cCCcEEEeeecCCc-cc-c------ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 43 EGHLIICDNANGLHKVS-EDGVENFLSYVNGS-KL-R------FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 43 dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~-~~-~------~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
+|.||+++....|+.+| .+|........... .. . ...++++. ++.+|++ ...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~------------------t~d 129 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFG------------------TLD 129 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEE------------------cCC
Confidence 68999988666799999 77722221111100 00 0 01223333 4677774 245
Q ss_pred ceEEEEeCCCCeeEEe
Q 023085 114 GQLLKYDPSSNITTLV 129 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~ 129 (287)
+.|+.+|.++|++..-
T Consensus 130 g~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 130 ARLVALDAKTGKVVWS 145 (527)
T ss_pred CEEEEEECCCCCEEee
Confidence 6899999988887543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.48 Score=40.66 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=61.5
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC---------CEEEEEEecCCCCcceeEEecc-----CC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK---------FRCRKYWLKGERKGKLETFAEN-----LP 179 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~---------~~l~~~~~~~~~~~~~~~~~~~-----~~ 179 (287)
+.++.+|.+++++.-.......++ ++++|+++.+|++++.= +-|..||..+-+ .+.+..... ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-PTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-EEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-ccceEecCCcchheec
Confidence 589999988887644333333334 67899999999988621 125566654321 111111211 11
Q ss_pred CCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCC
Q 023085 180 GAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTG 255 (287)
Q Consensus 180 ~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~ 255 (287)
..+..+++..||+ ++|..... ...|..+|.. .+.+..+..|.+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TP---------------------------------a~SVtVVDl~~~kvv~ei~~PGC 139 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTP---------------------------------ATSVTVVDLAAKKVVGEIDTPGC 139 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESS---------------------------------SEEEEEEETTTTEEEEEEEGTSE
T ss_pred ccccceEEccCCcEEEEEccCC---------------------------------CCeEEEEECCCCceeeeecCCCE
Confidence 2456677777774 77777652 3578888865 667777777653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.065 Score=48.48 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=45.2
Q ss_pred cccceEEEccCCCEEEEEeCCCC----------------EEEEEEecCC----CCcceeEEecc----C-----------
Q 023085 134 YFANGVALSRDEDYVVVCESWKF----------------RCRKYWLKGE----RKGKLETFAEN----L----------- 178 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~----------------~l~~~~~~~~----~~~~~~~~~~~----~----------- 178 (287)
..|..+++.|....+|++-+++. +|++|-.... +..+...|... .
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence 34778899988777998877544 5777765432 22233444321 0
Q ss_pred --CCCCcceeeCCCCCEEEEEecc
Q 023085 179 --PGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 179 --~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
-+.|++|++|+.|+||+++...
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCC
Confidence 1239999999999999999763
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.73 Score=39.22 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=69.3
Q ss_pred CcEEEEecCCeEEEEEC-C-ceEEEEeeCCcc----ccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccc
Q 023085 5 GVIYTATRDGWIKRLQD-G-TWVNWKFIDSQT----LVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~~-~-~~~~~~~~~~~~----~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
.+-|+....+.|++=.+ | .++........+ ...+.+. +...|++... +++... ..| .+.+... ... .
T Consensus 28 ~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~~~g~ivG~~-g~ll~T~DgG~tW~~v~l~-~~l-p 103 (302)
T PF14870_consen 28 NHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-GNEGWIVGEP-GLLLHTTDGGKTWERVPLS-SKL-P 103 (302)
T ss_dssp S-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEE-TTEEEEEEET-TEEEEESSTTSS-EE-----TT--S
T ss_pred CEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEec-CCceEEEcCC-ceEEEecCCCCCcEEeecC-CCC-C
Confidence 34454444555555442 2 344333222221 2144443 3467777533 554444 444 5555311 111 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+..+....++.++++. ..+.||+-.-....++.+. ........+..++||+++.|+.
T Consensus 104 gs~~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~-- 163 (302)
T PF14870_consen 104 GSPFGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS-- 163 (302)
T ss_dssp S-EEEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET--
T ss_pred CCeeEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC--
Confidence 234455554556665531 2356776654433444433 2233345566778998555553
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+++-.-.+.. ...........+...|.+++++.||+.+..
T Consensus 164 ~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw~~~~G 206 (302)
T PF14870_consen 164 RGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLWMLARG 206 (302)
T ss_dssp TSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EEEEETT
T ss_pred cccEEEEecCCCc--cceEEccCccceehhceecCCCCEEEEeCC
Confidence 3445443222211 122222122235678999999999998865
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.15 Score=43.87 Aligned_cols=132 Identities=13% Similarity=0.064 Sum_probs=80.2
Q ss_pred cEEEEecCCeEEEEECC----ceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccc
Q 023085 6 VIYTATRDGWIKRLQDG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~~----~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
+|.-|+++..++.|+.. -.++........+ .+.+.||+++.+.... +.|-..+ .+| +..+.. ....
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-----Hv~~ 411 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-----HVAA 411 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-----ccce
Confidence 57777788888888721 2223333333445 7889999986665433 4555566 667 444432 1346
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEEccCCCEEEEEeCCCC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
++.++...|.+|.++.+. +..|-.++.+++++..-.+ .......+-++|||+. |+..+.+
T Consensus 412 VYqvawsaDsRLlVS~Sk-----------------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r--V~sggkd 472 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSK-----------------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR--VASGGKD 472 (480)
T ss_pred eEEEEeccCccEEEEcCC-----------------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCce--eecCCCc
Confidence 788999999999997432 3455555545455443222 2334567778999974 4445567
Q ss_pred EEEEEE
Q 023085 157 RCRKYW 162 (287)
Q Consensus 157 ~l~~~~ 162 (287)
++++++
T Consensus 473 kv~~lw 478 (480)
T KOG0271|consen 473 KVLRLW 478 (480)
T ss_pred eEEEee
Confidence 777765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.64 Score=43.62 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=75.7
Q ss_pred CeEECCCCcEEEEeCCCc--eEEEccCC-cEEEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNANG--LHKVSEDG-VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~g--i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+|...+++.|+-+...+. ||....+. +..+.. ..+++++++.|. .+.|++. .-
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSG-----------------SL 430 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISG-----------------SL 430 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeec-----------------cc
Confidence 344455555555544432 33333333 444422 357899999984 5666652 22
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-----CCCCCcceee
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----LPGAPDNINL 187 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~ 187 (287)
++.|-.++....++......-.....+++.|||+...|... .+.+..|+..+.++.....+... ....+.|+-+
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 44444444443555444333356678999999997777764 56677777654432221111100 1123566665
Q ss_pred CCCC--CEEEEEecc
Q 023085 188 APDG--TFWIAIIKL 200 (287)
Q Consensus 188 d~~G--~lwv~~~~~ 200 (287)
.+.. .|.|++...
T Consensus 510 ~p~~~~~vLVTSnDS 524 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDS 524 (712)
T ss_pred cCCCCCeEEEecCCC
Confidence 4321 588888763
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.9 Score=39.63 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=73.7
Q ss_pred CeEECCCCcEEEEeCCCceEEE-c-cCCcEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 37 GLTSTKEGHLIICDNANGLHKV-S-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~-~-~~g~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.+++.|+|+...+....--+++ | .++.+.+.. .| ....+.++++.++|.|..+... ..-+
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q--EG-Hs~~v~~iaf~~DGSL~~tGGl---------------D~~~ 327 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ--EG-HSKGVFSIAFQPDGSLAATGGL---------------DSLG 327 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhHhh--cc-cccccceeEecCCCceeeccCc---------------cchh
Confidence 6777888876665433222222 2 333111111 01 2246789999999999886211 0113
Q ss_pred eEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-CC
Q 023085 115 QLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GT 192 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~ 192 (287)
.|| |..+|....+ ........++.|+|.|- ...+.+..+.+.+||+...+. ...+ ..-.+....+.+.++ |+
T Consensus 328 RvW--DlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~--ly~i-pAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 328 RVW--DLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSE--LYTI-PAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred hee--ecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccccc--ceec-ccccchhhheEecccCCe
Confidence 454 4455654443 44556678899999885 555556667788888754321 1111 111123456777774 44
Q ss_pred EEEEE
Q 023085 193 FWIAI 197 (287)
Q Consensus 193 lwv~~ 197 (287)
..+++
T Consensus 402 fL~Ta 406 (459)
T KOG0272|consen 402 FLVTA 406 (459)
T ss_pred EEEEc
Confidence 44444
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.033 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.4
Q ss_pred cceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 259 SFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 259 ~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
..+.+++.+ +|+|||+...+.+|.+|
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 457888885 79999999999999886
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.18 Score=39.93 Aligned_cols=101 Identities=23% Similarity=0.325 Sum_probs=60.4
Q ss_pred CccccCeEECCCCcEEEEeCCCceEEEccCC---cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeee
Q 023085 32 SQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 108 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g---~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~ 108 (287)
+..+ +++.|.+ +||.++...-+...|+.. ...+.-...+.|....|.+..- +|.+|.- .|.
T Consensus 131 GeGW-gLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyAN---------Vw~---- 194 (262)
T COG3823 131 GEGW-GLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYAN---------VWQ---- 194 (262)
T ss_pred Ccce-eeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEe---------eee----
Confidence 4456 7766643 588887555566666433 2333234455666666666443 5655541 111
Q ss_pred ccCCCceEEEEeCCCCeeEEeec--c-----------ccccceEEEccCCCEEEEEe
Q 023085 109 EGKPHGQLLKYDPSSNITTLVAD--G-----------FYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 109 ~~~~~~~v~~~~~~~~~~~~~~~--~-----------~~~~~~i~~~~~~~~l~v~~ 152 (287)
...+.|++|++|++...-. + ..-.|||+++|++..+|++.
T Consensus 195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2368999999998765311 1 12468999999988888874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.82 Score=38.05 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred CCcEEEEecCCeEEEEE--CCc-eEEEEeeCCccccCeEECC-CCcEEEEeCCC-ceEEEc-cCC--cEEEeeecCCccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~-~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~~-gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
|+.|..++.+.....|+ +|+ ...+....+... ++.+.| +++.+|.-.-. --...| +.+ .+.+... .
T Consensus 156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-----e 229 (343)
T KOG0286|consen 156 DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-----E 229 (343)
T ss_pred CCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-----c
Confidence 67788888777777788 443 334444445556 777888 88888874332 234455 566 5554322 2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-eeEEeecc--ccccceEEEccCCCEEEEEe
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADG--FYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--~~~~~~i~~~~~~~~l~v~~ 152 (287)
..++.+.+-|+|.-+.+.+. ++..-.||.+.+ ++..+... ....+.++|+.-|+.||...
T Consensus 230 sDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 230 SDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred cccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 46889999999998886332 344445555433 45444432 23457889999999777653
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
....+..||.=. ++.......-.++..++.+.+||.
T Consensus 293 -~d~~c~vWDtlk---~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 293 -DDFTCNVWDTLK---GERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred -cCCceeEeeccc---cceEEEeeccCCeeEEEEECCCCc
Confidence 456788888421 211111112223455666777773
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.63 Score=38.76 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=78.9
Q ss_pred CCCCCcEEEEecC------CeEEEEE-CCceEEEEee---CCccccCeEECCCCcEEEEeCCCc----------------
Q 023085 1 MDKNGVIYTATRD------GWIKRLQ-DGTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANG---------------- 54 (287)
Q Consensus 1 ~d~~G~l~~~~~~------g~i~~~~-~~~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~g---------------- 54 (287)
|.+||.+..+|.+ |-|-.|+ ...+.+..+. .-.|. .+.+-+||++.+...+ |
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH-ev~lm~DGrtlvvanG-GIethpdfgR~~lNlds 198 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH-EVTLMADGRTLVVANG-GIETHPDFGRTELNLDS 198 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc-eeEEecCCcEEEEeCC-ceecccccCccccchhh
Confidence 4678977777733 5556666 4444444332 23455 7888899987665312 2
Q ss_pred ----eEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC--ceEEEEeCCCCe
Q 023085 55 ----LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH--GQLLKYDPSSNI 125 (287)
Q Consensus 55 ----i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~ 125 (287)
+..++ .+| +++.. ........++..+..+.+|++|+.... . +... --|.-...+++.
T Consensus 199 MePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgtvwfgcQy--------~-----G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGTVWFGCQY--------R-----GPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred cCccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCcEEEEEEe--------e-----CCCccCCcceeeccCCCc
Confidence 23333 344 22211 111123457788999999999997432 0 0000 012211122233
Q ss_pred eEEeecc-------ccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 126 TTLVADG-------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 126 ~~~~~~~-------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
++.+.-+ -.+.-.|+..-+.+.+-++...+++...+|.+.+
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 3322111 1223456666555566677777788888887654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=2 Score=42.05 Aligned_cols=142 Identities=12% Similarity=0.073 Sum_probs=73.6
Q ss_pred CCCCCc-EEEEecCCeEEEEE-CCc-----eE---EEEeeCCccccCeEECCC-CcEEEE-eCCCceEEEc-cCC--cEE
Q 023085 1 MDKNGV-IYTATRDGWIKRLQ-DGT-----WV---NWKFIDSQTLVGLTSTKE-GHLIIC-DNANGLHKVS-EDG--VEN 65 (287)
Q Consensus 1 ~d~~G~-l~~~~~~g~i~~~~-~~~-----~~---~~~~~~~~~~~~i~~d~d-g~l~v~-~~~~gi~~~~-~~g--~~~ 65 (287)
|+++|. |..+..++.|..|+ ... .. ........+...++..+. +++.++ ...+.|..+| .++ +..
T Consensus 491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~ 570 (793)
T PLN00181 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE 570 (793)
T ss_pred ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 356775 44555788888887 211 00 000111122225666653 444443 3333455566 555 333
Q ss_pred EeeecCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEc-c
Q 023085 66 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS-R 143 (287)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~-~ 143 (287)
+.. ....+.++++++ ++.++++. ..++.|..+|..++..............+.+. +
T Consensus 571 ~~~-----H~~~V~~l~~~p~~~~~L~Sg-----------------s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~ 628 (793)
T PLN00181 571 MKE-----HEKRVWSIDYSSADPTLLASG-----------------SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSE 628 (793)
T ss_pred ecC-----CCCCEEEEEEcCCCCCEEEEE-----------------cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCC
Confidence 311 123578888885 67777752 23567777877655432222212233445564 4
Q ss_pred CCCEEEEEeCCCCEEEEEEecC
Q 023085 144 DEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
++..+. +.+..+.|..||+..
T Consensus 629 ~g~~la-tgs~dg~I~iwD~~~ 649 (793)
T PLN00181 629 SGRSLA-FGSADHKVYYYDLRN 649 (793)
T ss_pred CCCEEE-EEeCCCeEEEEECCC
Confidence 566444 445667899999754
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.4 Score=40.35 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=59.1
Q ss_pred cccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--------eEEeeccccccceEEEccCCC
Q 023085 76 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--------TTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 76 ~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~ 146 (287)
..+.++++++ ++.++++. ..++.|..|+..++. +..+.........++|+|++.
T Consensus 76 ~~V~~v~fsP~d~~~LaSg-----------------S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~ 138 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTA-----------------SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM 138 (493)
T ss_pred CCEEEEEEcCCCCCEEEEE-----------------eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC
Confidence 3577888888 67766642 234566666654332 112222223456688999764
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.++....+.|..||+...+ ....+. .-......+++.++|++.+++..
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~--~~~~l~-~h~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGK--AVEVIK-CHSDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCe--EEEEEc-CCCCceEEEEEECCCCEEEEecC
Confidence 455555567789999986432 111221 11223566788888887666544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1 Score=38.51 Aligned_cols=192 Identities=10% Similarity=0.088 Sum_probs=101.5
Q ss_pred CccccCeEECCCCcEEEEeCC-C-ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeee
Q 023085 32 SQTLVGLTSTKEGHLIICDNA-N-GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~-~-gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~ 107 (287)
.... .++.+|+.+ |+++.+ . --+..+ .+| +....... -.++..+.+.-+|.+..|
T Consensus 65 ~svF-avsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgH----KDSVt~~~FshdgtlLAT--------------- 123 (399)
T KOG0296|consen 65 DSVF-AVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELTGH----KDSVTCCSFSHDGTLLAT--------------- 123 (399)
T ss_pred CceE-EEEeCCCCc-eEEecCCCceEEEEEccCCcceeEecCC----CCceEEEEEccCceEEEe---------------
Confidence 3344 677888445 444433 1 123333 455 22221111 246788889999998886
Q ss_pred eccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
+..+|.|..+...++...... .......-+.+.|.+. ++.+.+..+.+|.|.+... ...+.+... ......=.
T Consensus 124 --GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~Gh-~~~ct~G~ 197 (399)
T KOG0296|consen 124 --GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSGH-NSPCTCGE 197 (399)
T ss_pred --cCCCccEEEEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecCC-CCCccccc
Confidence 233566666666655544332 2333334456788787 5556666788999988643 334444321 11111122
Q ss_pred eCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccc-----cc
Q 023085 187 LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLM-----SF 260 (287)
Q Consensus 187 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~-----~~ 260 (287)
+-++|+.-++... .+.|...+|+ |.++..+...++... +.
T Consensus 198 f~pdGKr~~tgy~----------------------------------dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 198 FIPDGKRILTGYD----------------------------------DGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred ccCCCceEEEEec----------------------------------CceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 3456765444443 2577788876 777777764443222 22
Q ss_pred eEEEEE---eCCEEEEEecCCCeEEEE
Q 023085 261 VTSGLQ---VDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 261 ~~~~~~---~~g~l~i~~~~~~~i~~~ 284 (287)
...... .++..++.+.....|..|
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred ccceeEeccCCccEEEEccccceEEEe
Confidence 222222 245566666665555544
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.5 Score=40.59 Aligned_cols=171 Identities=19% Similarity=0.183 Sum_probs=88.8
Q ss_pred CCCCc-EEEEe-cCCeEEEEE-CCceEEEEeeCCc-----cccCeEECCCCc-EEEEe-CCCceEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ-DGTWVNWKFIDSQ-----TLVGLTSTKEGH-LIICD-NANGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~-~~~~~~~~~~~~~-----~~~~i~~d~dg~-l~v~~-~~~gi~~~~-~~g-~~~~~~~ 69 (287)
.++|. |.+++ ..-.|++++ ++.... ...... +.+.+.+..|++ ++++. ....+..++ .+. ...+...
T Consensus 391 SPdg~~Ia~st~~~~~iy~L~~~~~vk~-~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 391 SPDGNLIAISTVSRTKIYRLQPDPNVKV-INVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred CCCCCEEEEeeccceEEEEeccCcceeE-EEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc
Confidence 35664 44555 555777777 443322 222111 111344444553 33333 223455555 333 3333332
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc-ccceEEEccC-CCE
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRD-EDY 147 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~~~ 147 (287)
......+.+..|++.++|+-+.+ ....+.|+.|+.++++.+.+...+. .....++.|. ...
T Consensus 470 ~~~~~~~~I~~l~~SsdG~yiaa-----------------~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~ 532 (691)
T KOG2048|consen 470 QSQAKCPSISRLVVSSDGNYIAA-----------------ISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNR 532 (691)
T ss_pred ccccCCCcceeEEEcCCCCEEEE-----------------EeccceEEEEEcccceeecchhccCcceeeeeccccccCc
Confidence 22223457788999999984442 2245789999998777666543332 2334456643 345
Q ss_pred EEEEeCCCCEEEEEEecCCCCcce---------eEEeccCCCCCcceeeCCCCC
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKL---------ETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~d~~G~ 192 (287)
|.++.+ ++.++-||++..++.+. ..+. .......++.+|+.+.
T Consensus 533 lvvats-~nQv~efdi~~~~l~~ws~~nt~nlpk~~~-~l~~~~~gisfd~~n~ 584 (691)
T KOG2048|consen 533 LVVATS-NNQVFEFDIEARNLTRWSKNNTRNLPKEPK-TLIPGIPGISFDPKNS 584 (691)
T ss_pred EEEEec-CCeEEEEecchhhhhhhhhccccccccChh-hcCCCCceEEeCCCCc
Confidence 777765 57899999853322211 1111 1223356788887653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.5 Score=42.31 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=37.7
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC-C---CCcceeeCCCCCEEE
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-G---APDNINLAPDGTFWI 195 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~---~~~~i~~d~~G~lwv 195 (287)
-+|.|+.+..+++.+..+.+..|+++.. +...+++.+... + .+...+++++|++..
T Consensus 274 g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 274 GCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred cccccCcccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 4688998889999998899999998753 234445543211 1 245567789998733
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.8 Score=40.64 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=103.6
Q ss_pred cccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 34 TLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 34 ~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
|+.+..+.|+.++.+.....+-.|+- -+..+.+.... + +..-+.++.+.+.|..|++-++ ..
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-G-H~~PVwdV~F~P~GyYFatas~---------------D~ 515 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-G-HLAPVWDVQFAPRGYYFATASH---------------DQ 515 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEec-C-CCcceeeEEecCCceEEEecCC---------------Cc
Confidence 33377788888877775553333332 11122222211 1 1223456777877776665322 12
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
...||-.|-. ...+.++.......-+.|.|...++... +....+..||+..+ ...+.|.. -.+....+++.+.|
T Consensus 516 tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTG-SsD~tVRlWDv~~G--~~VRiF~G-H~~~V~al~~Sp~G- 589 (707)
T KOG0263|consen 516 TARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATG-SSDRTVRLWDVSTG--NSVRIFTG-HKGPVTALAFSPCG- 589 (707)
T ss_pred eeeeeecccC-CchhhhcccccccceEEECCcccccccC-CCCceEEEEEcCCC--cEEEEecC-CCCceEEEEEcCCC-
Confidence 2357766542 4444455555555557788877633333 44456777776543 23555542 11235668888888
Q ss_pred EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCE
Q 023085 193 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNH 270 (287)
Q Consensus 193 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~ 270 (287)
.|+++..- .+.|...|. .|+.+..+... .+.+.++.+. +|.
T Consensus 590 r~LaSg~e---------------------------------d~~I~iWDl~~~~~v~~l~~H----t~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 590 RYLASGDE---------------------------------DGLIKIWDLANGSLVKQLKGH----TGTIYSLSFSRDGN 632 (707)
T ss_pred ceEeeccc---------------------------------CCcEEEEEcCCCcchhhhhcc----cCceeEEEEecCCC
Confidence 55555441 234555553 34555544322 2346666664 677
Q ss_pred EEEEecCCCeEEEEeC
Q 023085 271 LYVISLTSNFIGKVQL 286 (287)
Q Consensus 271 l~i~~~~~~~i~~~~~ 286 (287)
+.+.+-..+.|...|+
T Consensus 633 vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCCCeEEEEEc
Confidence 7677666777776664
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.8 Score=40.43 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=50.3
Q ss_pred eEEEEE--CCceEEEEeeCCccc-cCeEECCCCcEEEEeCC-------CceEEEc-cCC-cEEEeeecCCccccccceEE
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV 82 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~-~~i~~d~dg~l~v~~~~-------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 82 (287)
.+.+|+ .+++......+.... .+.+. -++.||+.... ..++++| .+. +..+.+-. .+.... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R~~~-~~- 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI--KNRCRF-SL- 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--chhhce-eE-
Confidence 356777 555554433322111 02222 36788887431 1377888 555 55543211 111121 22
Q ss_pred EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec
Q 023085 83 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 131 (287)
Q Consensus 83 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 131 (287)
+.-+|.||+.... . .......+.+|||.++++..+..
T Consensus 348 ~~~~g~IYviGG~--------~----~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 348 AVIDDTIYAIGGQ--------N----GTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEECCEEEEECCc--------C----CCCCCceEEEEECCCCeEEECCC
Confidence 2336889985211 0 00112468999999888876543
|
|
| >PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.019 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=16.1
Q ss_pred cccceEEEEEe-CCEEEEEecC
Q 023085 257 LMSFVTSGLQV-DNHLYVISLT 277 (287)
Q Consensus 257 ~~~~~~~~~~~-~g~l~i~~~~ 277 (287)
..+.+.++++| +|+|||||.+
T Consensus 3 ~~n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEETS
T ss_pred CCCeEEEEEEcCCcCEEEEeCC
Confidence 34678899998 7999999863
|
These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.26 Score=42.80 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=51.3
Q ss_pred CCC-cEEEEecCCeEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCcccc
Q 023085 3 KNG-VIYTATRDGWIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
+|| ++..|+.++.++.++ +|+. ..|.......++.+++.+||. +++.+....|..++ ++. -..+... ..
T Consensus 322 pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-----~~ 396 (519)
T KOG0293|consen 322 PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE-----EQ 396 (519)
T ss_pred cCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc-----cC
Confidence 456 577788888999998 5543 233332222233899999996 44444445677776 444 1112111 12
Q ss_pred ccceEEEcCCCcEEEEc
Q 023085 77 FANDVVEASDGSLYFTV 93 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~ 93 (287)
.+..+.+..+|.+.+.+
T Consensus 397 ~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVN 413 (519)
T ss_pred ceeEEEEcCCCcEEEEE
Confidence 45677888888877753
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.23 Score=45.71 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCc--ce--eeee--eccCCCceEEEEeCCCCeeEEeecc--ccccceEEEccCC
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPH--EY--CLDI--LEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDE 145 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~--~~--~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 145 (287)
.+..|..|+++++|+|||+......... .. ..+. +.......++..++.+++++++... .....|++|+||+
T Consensus 434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg 513 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDG 513 (524)
T ss_pred CcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCC
Confidence 3678999999999999998544221100 00 0000 0000001155667777777776533 2345689999999
Q ss_pred CEEEEE
Q 023085 146 DYVVVC 151 (287)
Q Consensus 146 ~~l~v~ 151 (287)
++||+.
T Consensus 514 ~tlFvn 519 (524)
T PF05787_consen 514 RTLFVN 519 (524)
T ss_pred CEEEEE
Confidence 999885
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.6 Score=38.63 Aligned_cols=176 Identities=18% Similarity=0.159 Sum_probs=91.2
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc--------cCC-cEEEee
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS--------EDG-VENFLS 68 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~--------~~g-~~~~~~ 68 (287)
+++|.+.++. ..|.||.|- +|....+...-=.+.+.+.+..||.++++....| |+.+. +++ ..++..
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 4667655555 788898887 6655332211112222667777888777754544 33322 111 111111
Q ss_pred ecCCccccccceEEEcCCC---cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCC
Q 023085 69 YVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 145 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 145 (287)
. .+ .-..+.++.++..| +||-+ ..+..+-.+|...|.+-.-..-...++.+++||-+
T Consensus 170 f-~~-HtlsITDl~ig~Gg~~~rl~Ta------------------S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae 229 (476)
T KOG0646|consen 170 F-SD-HTLSITDLQIGSGGTNARLYTA------------------SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAE 229 (476)
T ss_pred e-cc-CcceeEEEEecCCCccceEEEe------------------cCCceEEEEEeccceeeEEEecCCcceeEEEcccc
Confidence 0 01 11245666666543 33332 23345556666656543222222345788999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCC--------C------cceeEEeccCC-CCCcceeeCCCCCEEEEEe
Q 023085 146 DYVVVCESWKFRCRKYWLKGER--------K------GKLETFAENLP-GAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~--------~------~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~ 198 (287)
+.+|+..+ .++|+...+.+-. . .+...+..... .....+++..||++.++..
T Consensus 230 ~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 230 RVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred cEEEecCC-cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 98998875 5678887764311 0 01111111111 1345677777887776664
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.1 Score=39.30 Aligned_cols=155 Identities=14% Similarity=0.028 Sum_probs=71.5
Q ss_pred CCceEEEEeCCCCeeEEeeccc-cccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCC--cceeeC
Q 023085 112 PHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP--DNINLA 188 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~d 188 (287)
...++|.+|..+++...+.... ....|..++++.+.+|... .+..|+++++++.+ +...+. ...... .....+
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE--ERVVYE-VPDDWKGYGTWVAN 133 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EEEEEE---TTEEEEEEEEE-
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCc--EEEEEE-CCcccccccceeeC
Confidence 3457999999999998886543 3334677788888776554 34689999986532 223332 111111 234457
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE-EECCC--Ccccc---ceE
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN-LVDPT--GQLMS---FVT 262 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-~~~~~--~~~~~---~~~ 262 (287)
++++..++....+. ..+........+..+. ..+..+|++++.++...+. +.... |.+.. .+.
T Consensus 134 ~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 134 SDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred CCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 78888877754211 1111111122333343 4445799999977544443 33222 11000 122
Q ss_pred --EEEEe------CCEEEEEecCCCeEE
Q 023085 263 --SGLQV------DNHLYVISLTSNFIG 282 (287)
Q Consensus 263 --~~~~~------~g~l~i~~~~~~~i~ 282 (287)
.+|.. +.|||+....+.-+.
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~ 229 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVK 229 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---E
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcce
Confidence 22221 358999888766543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.5 Score=37.70 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=80.6
Q ss_pred ceEEEEeCCCCeeEE-eeccccccceEE-EccCCCEEEEEe---CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 114 GQLLKYDPSSNITTL-VADGFYFANGVA-LSRDEDYVVVCE---SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~-~~~~~~~~~~i~-~~~~~~~l~v~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
..+|.||.++-++-. +......|.|++ +++....-|++- ...+.|+.||..+- .....+. .-.+....++++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~-aH~~~lAalafs 182 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTIN-AHKGPLAALAFS 182 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEE-ecCCceeEEEEC
Confidence 358888876544322 222224566654 565443334433 23467888886532 1111111 111235679999
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEE--CCCCcEEEEEECCCCccccceEEEEE
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV--AEDGTIIRNLVDPTGQLMSFVTSGLQ 266 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~ 266 (287)
++|++-.+... .|.|.|+ -++|+.+..|.. |...-.+.++++
T Consensus 183 ~~G~llATASe----------------------------------KGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~F 226 (391)
T KOG2110|consen 183 PDGTLLATASE----------------------------------KGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSF 226 (391)
T ss_pred CCCCEEEEecc----------------------------------CceEEEEEEcCCccEeeeeeC--CceeeEEEEEEE
Confidence 99987666554 3566664 378888888764 444456788888
Q ss_pred e-CCEEEEEecCCCeEEEEeCC
Q 023085 267 V-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 267 ~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
+ +.....++-+...|++|.|+
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEec
Confidence 6 56666777778899999875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.59 Score=40.47 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=76.7
Q ss_pred cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 12 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 12 ~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+..|..|| +|+.......+...+ ++.+..||.+++++.. +.|.++| +.| +..-.....| ..+....+-.+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---~k~~Raifl~~ 227 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---AKPARAIFLAS 227 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC---CCcceeEEecc
Confidence 456677777 565544434455566 8889999999988755 4677888 666 3222122222 23334445556
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEE---EccCCCEEEEEeCCCCEEEEEEe
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA---LSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
|.++.|..+ + ...-.+..+|+..-+.-.....+...+|+. +++|.+.+|++.-+.+.|.-|.+
T Consensus 228 g~i~tTGfs-r-------------~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 228 GKIFTTGFS-R-------------MSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred Cceeeeccc-c-------------ccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 775554322 0 011123344443111111122233445554 58999999999987778888887
Q ss_pred cC
Q 023085 164 KG 165 (287)
Q Consensus 164 ~~ 165 (287)
..
T Consensus 294 t~ 295 (472)
T KOG0303|consen 294 TN 295 (472)
T ss_pred cC
Confidence 54
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.9 Score=38.81 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=62.3
Q ss_pred cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-----e-cccccc
Q 023085 63 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-----A-DGFYFA 136 (287)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~-~~~~~~ 136 (287)
.+.+.....+.....|..-+++++|.++.+ +-..|.|..|+..+.-+... + ...+..
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa-----------------gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAA-----------------GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhh-----------------cccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 444444333333334556678888887442 22345666666432211111 1 112345
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC-CC-CcceeeCCCCCEEEEEec
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-GA-PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~d~~G~lwv~~~~ 199 (287)
..|.|+.||+ ...+....+.|..||+...+.. ...+. .++ .. -.+.++.++..|-++...
T Consensus 368 tsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkp-L~~~t-gL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 368 TSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKP-LNVRT-GLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eEEEeccccc-hhhhccCCCceeeeeccccccc-hhhhc-CCCccCCCCccccCCCceEEEeccc
Confidence 6788999998 4455556678888887532110 11111 111 12 245778888888887765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1 Score=36.76 Aligned_cols=119 Identities=12% Similarity=0.122 Sum_probs=65.6
Q ss_pred CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEE
Q 023085 53 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTL 128 (287)
Q Consensus 53 ~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~ 128 (287)
+.|...| ++| +..+.. ...++.+.+..+|++...- -.+.|-.+|+++=. ++.
T Consensus 165 ~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia------------------~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIA------------------YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred CceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEe------------------cCceeEEeccccccceee
Confidence 4555566 666 333321 2357788999999976641 12467777775322 221
Q ss_pred eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 129 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 129 ~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+. .....+.....|+. .+||+.-....+++||...+. +...+...-.+....+.+.++|.+|.+...
T Consensus 221 ~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 221 YK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cc-CccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCC
Confidence 11 11122333456766 489988777789999987431 111221122233456677777777665543
|
|
| >PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.019 Score=28.67 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.3
Q ss_pred CCcceeeCCCCCEEEEEe
Q 023085 181 APDNINLAPDGTFWIAII 198 (287)
Q Consensus 181 ~~~~i~~d~~G~lwv~~~ 198 (287)
....|+.|++|+||+++.
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 356789999999999985
|
These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.51 Score=41.08 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=66.8
Q ss_pred ccCeEECCCCcEEEEeCCCceE-EEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 35 LVGLTSTKEGHLIICDNANGLH-KVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~-~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
+.++++.+||.|..+..-..+- +.| ++| ...+... ....+.+|.++++|....|.++
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g----H~k~I~~V~fsPNGy~lATgs~---------------- 365 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG----HIKEILSVAFSPNGYHLATGSS---------------- 365 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecc----cccceeeEeECCCceEEeecCC----------------
Confidence 3389999999998764333332 234 677 3333221 2346789999999988776332
Q ss_pred CCc--eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 112 PHG--QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 112 ~~~--~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
++ .||.+-.. ..+..++........+.|+|+...+.++.+..+.+..|..
T Consensus 366 -Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 366 -DNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -CCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 33 45555433 3344445555566788899976667777777666666653
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.6 Score=37.14 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=27.3
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 130 (287)
++|+|..+.+|++.|+- .....|+++++++|++....
T Consensus 145 HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred EeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEe
Confidence 57788888888888862 22357889998888877664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.92 Score=38.35 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=78.0
Q ss_pred CCCcEEEEe-cCCeEEEEE--CCceEE-EEeeC-----CccccCeEECCCCcEEEEeCCCceEEEc--cCC-c-EEEee-
Q 023085 3 KNGVIYTAT-RDGWIKRLQ--DGTWVN-WKFID-----SQTLVGLTSTKEGHLIICDNANGLHKVS--EDG-V-ENFLS- 68 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~--~~~~~~-~~~~~-----~~~~~~i~~d~dg~l~v~~~~~gi~~~~--~~g-~-~~~~~- 68 (287)
++-.+|.++ +..-|..++ +|+.+. +..-. -... ++.+.+||.-.+|...+.|.+++ +.| . .....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence 455677766 556677777 665542 21111 1224 78899999755555566788887 556 2 22221
Q ss_pred --ecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCC
Q 023085 69 --YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 145 (287)
Q Consensus 69 --~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 145 (287)
...++ ...+..+++.+-.. ++...+. ...-+|++.+-. +.+..+........-+.+.++|
T Consensus 200 ~~~k~gq-~giisc~a~sP~~~~~~a~gsY---------------~q~~giy~~~~~-~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 200 TKGKFGQ-KGIISCFAFSPMDSKTLAVGSY---------------GQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hcccccc-cceeeeeeccCCCCcceeeecc---------------cceeeeEecCCC-CceeeecccCCCeeeEEeccCc
Confidence 11121 12344566665432 3332111 011235544422 2222222222233446788999
Q ss_pred CEEEEEeCCCCEEEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~ 164 (287)
+.||........|.++|+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIR 281 (406)
T ss_pred CeecccccCCCeEEEEeeh
Confidence 9999999888999999984
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.39 Score=40.42 Aligned_cols=106 Identities=16% Similarity=0.261 Sum_probs=57.8
Q ss_pred CeEECCCCcEEEEeCCCceEEEc--cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
.+.+.+|+.-.+........|+- ..| +..+. +. ...++...+.++|+-.++.+ .
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----GH-sSyvn~a~ft~dG~~iisaS-----------------s 368 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----GH-SSYVNEATFTDDGHHIISAS-----------------S 368 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhc----Cc-cccccceEEcCCCCeEEEec-----------------C
Confidence 56777888544443344455554 344 33332 21 24677888888998777532 3
Q ss_pred CceEEEEeCCCCeeEEeec---cccccceEEEccCCC-EEEEEeCCCCEEEEEEecC
Q 023085 113 HGQLLKYDPSSNITTLVAD---GFYFANGVALSRDED-YVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~-~l~v~~~~~~~l~~~~~~~ 165 (287)
++.|-.++.++.+...... .....+.+..-|++- .+.|++ ..+.++..++.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qG 424 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQG 424 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccc
Confidence 5667777766554322111 112335555555543 355555 356787777654
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.99 Score=40.05 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=34.5
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcce--eEEec--------------cCCCCCcceeeCCCC-CEEEEE
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL--ETFAE--------------NLPGAPDNINLAPDG-TFWIAI 197 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~i~~d~~G-~lwv~~ 197 (287)
.+..|.++.|.+.||+++...+.++.||++++...+. +.+.. ...+.|.=+.+..|| +||+++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 3467889999999999999999999999987533222 11111 122446667778888 599888
Q ss_pred ec
Q 023085 198 IK 199 (287)
Q Consensus 198 ~~ 199 (287)
.-
T Consensus 393 SL 394 (461)
T PF05694_consen 393 SL 394 (461)
T ss_dssp --
T ss_pred ec
Confidence 53
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.7 Score=35.80 Aligned_cols=137 Identities=10% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
..-.+++|++.+.+...| .|+.........+.. +-+.--.+.+.++=+..+++.++ .+| ...+..... ..
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----vk 96 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----VK 96 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh----hc
Confidence 334688999988888888 666544433332222 21111122366666666788887 777 333322110 12
Q ss_pred cceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.. -.+|.+ |-+|.+ +.+++++.+|+++..-... ..+.....+-++++-...||++.+.
T Consensus 97 ~~-a~~d~~~glIycg------------------shd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~- 156 (354)
T KOG4649|consen 97 VR-AQCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITA- 156 (354)
T ss_pred cc-eEEcCCCceEEEe------------------cCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEecc-
Confidence 22 235555 456773 3457788888875432221 1111222334566633349998764
Q ss_pred CEEEEEEec
Q 023085 156 FRCRKYWLK 164 (287)
Q Consensus 156 ~~l~~~~~~ 164 (287)
+.+.+...+
T Consensus 157 G~vlavt~~ 165 (354)
T KOG4649|consen 157 GAVLAVTKN 165 (354)
T ss_pred ceEEEEccC
Confidence 566666654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.8 Score=37.67 Aligned_cols=127 Identities=16% Similarity=0.080 Sum_probs=68.9
Q ss_pred eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
+++.++ .++........+.-. ...+.+||+ |.++.... .|+.+| ..+ ...+.... +.. . .=...++
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~-gi~-~---~Ps~spd 292 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGF-GIN-T---SPSWSPD 292 (425)
T ss_pred eEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCC-ccc-c---CccCCCC
Confidence 355555 333333333333333 567788995 55553332 488888 444 44443221 111 1 2235667
Q ss_pred Cc-E-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE--EEEEE
Q 023085 87 GS-L-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR--CRKYW 162 (287)
Q Consensus 87 g~-l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~--l~~~~ 162 (287)
|+ | |++|.+ +.-.|++++++.+....+........--.++|||+.+.+....++. +..++
T Consensus 293 G~~ivf~Sdr~----------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~ 356 (425)
T COG0823 293 GSKIVFTSDRG----------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKND 356 (425)
T ss_pred CCEEEEEeCCC----------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEec
Confidence 75 3 334433 3347999999877776665544443345678999988777744343 44444
Q ss_pred e
Q 023085 163 L 163 (287)
Q Consensus 163 ~ 163 (287)
+
T Consensus 357 ~ 357 (425)
T COG0823 357 L 357 (425)
T ss_pred c
Confidence 4
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=3.3 Score=38.79 Aligned_cols=210 Identities=12% Similarity=0.077 Sum_probs=104.7
Q ss_pred eEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEEEeCCC-------ceEEEc-cCC-cEEEeeecCCccccccceEE
Q 023085 15 WIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNAN-------GLHKVS-EDG-VENFLSYVNGSKLRFANDVV 82 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v~~~~~-------gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 82 (287)
.+-.|+ .+++......+ .....++++- +|.||++.... .+.+|| .+. ++.+++-.. + ..-.+++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~-R~~~~v~ 377 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--K-RSDFGVA 377 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--c-cccceeE
Confidence 344555 44444443322 1222144444 56888874222 378888 444 555433211 1 1112332
Q ss_pred EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC------C
Q 023085 83 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK------F 156 (287)
Q Consensus 83 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~------~ 156 (287)
+- +|.||+.... + ....-..+-+|||.+.+++.++.....-.+.+...-++.||+..-.. .
T Consensus 378 ~l-~g~iYavGG~--------d----g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 378 VL-DGKLYAVGGF--------D----GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred EE-CCEEEEEecc--------c----cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 22 6888885211 0 01122469999999999888765433333333333344588875311 3
Q ss_pred EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceE
Q 023085 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH 236 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (287)
.+.+||+..++-.......... .-.+++. -++.||+...... ......
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R--~~~g~a~-~~~~iYvvGG~~~-----------------------------~~~~~~ 492 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRR--SGFGVAV-LNGKIYVVGGFDG-----------------------------TSALSS 492 (571)
T ss_pred eEEEEcCCCCceeecCCccccc--ccceEEE-ECCEEEEECCccC-----------------------------CCccce
Confidence 5778887543222111111110 1122333 2667888775410 011235
Q ss_pred EEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEe
Q 023085 237 LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS 275 (287)
Q Consensus 237 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 275 (287)
+.+|||..+....... -.......+++..++.||+.+
T Consensus 493 VE~ydp~~~~W~~v~~--m~~~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAP--MTSPRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred EEEEcCCCCceeEccc--CccccccccEEEECCEEEEEe
Confidence 8899998776666542 111223455566788888754
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.67 E-value=2.6 Score=36.28 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=79.8
Q ss_pred CcEEEEe--cCCeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 5 GVIYTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 5 G~l~~~~--~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
|+-||++ .++-+-.|| +|........-.....++++.+-. .|+-+...+.|-++| +.. ++.+- ..+.
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-----GHlS 236 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-----GHLS 236 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc-----cccc
Confidence 4667776 455555666 555533222111112266666443 344443334566666 433 33331 1245
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEcc-CCCEEEEEeCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSR-DEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~~l~v~~~~ 154 (287)
.+.++...+--++.++. ..+..+-.+|..+.. +..+.........+.+.| +.+ + ++.+.
T Consensus 237 ~V~~L~lhPTldvl~t~-----------------grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq-v-it~S~ 297 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTG-----------------GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ-V-ITGSH 297 (460)
T ss_pred eeEEEeccccceeEEec-----------------CCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc-e-EEecC
Confidence 67778887766777752 223344445555443 433333333334444443 343 4 44456
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...|..||+..++ ......... -....++..++-+++.+...
T Consensus 298 D~tvrlWDl~agk--t~~tlt~hk-ksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 298 DSTVRLWDLRAGK--TMITLTHHK-KSVRALCLHPKENLFASASP 339 (460)
T ss_pred CceEEEeeeccCc--eeEeeeccc-ceeeEEecCCchhhhhccCC
Confidence 6778888875321 011111000 02345666666556655544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=4 Score=38.10 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEee-CCccccCeEECCCCcEEEEe
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICD 50 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~-~~~~~~~i~~d~dg~l~v~~ 50 (287)
.+||. |.++ .+.+++.|+ +|........ ....+ .++...||.++.+.
T Consensus 21 kPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG 71 (1081)
T KOG1538|consen 21 KPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASG 71 (1081)
T ss_pred CCCCceEEEe-cCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccC
Confidence 47784 4444 567899999 5655443333 23334 78888888877664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1 Score=38.12 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=75.8
Q ss_pred CceEEEEeCCCCeeEEee------ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC--CCcceeEEec---cCCCC
Q 023085 113 HGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAE---NLPGA 181 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~--~~~~~~~~~~---~~~~~ 181 (287)
..-|..+|.-+|+.+.-. ........++|+|||+.||... +.+|.+|+...+ .-.....+.. .+.+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 345666666666654311 1234567899999999887764 678999997522 1111111111 12233
Q ss_pred CcceeeCCC--CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCcccc
Q 023085 182 PDNINLAPD--GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMS 259 (287)
Q Consensus 182 ~~~i~~d~~--G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~ 259 (287)
...+++.+- +.+-+++... .-+|++-+ ++..+..+....|
T Consensus 210 isc~a~sP~~~~~~a~gsY~q---------------------------------~~giy~~~-~~~pl~llggh~g---- 251 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQ---------------------------------RVGIYNDD-GRRPLQLLGGHGG---- 251 (406)
T ss_pred eeeeeccCCCCcceeeecccc---------------------------------eeeeEecC-CCCceeeecccCC----
Confidence 445555552 2344444331 12444432 3556666554333
Q ss_pred ceEEEE--EeCCEEEEEecCCCeEEEEeC
Q 023085 260 FVTSGL--QVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 260 ~~~~~~--~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.++-+. +++++||.|....+.|.+.|+
T Consensus 252 GvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 252 GVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred CeeeEEeccCcCeecccccCCCeEEEEee
Confidence 466544 467899999999999998875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.51 Score=39.60 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=61.6
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE---eeccccccceEEEccCCCEEEEEeC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.++.+.+.+..+|.++. ..++.|-.+|-..-..+. +.........|.|.|-|+.|.+..
T Consensus 174 evn~l~FHPre~ILiS~-----------------srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT- 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISG-----------------SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT- 235 (430)
T ss_pred cccceeecchhheEEec-----------------cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence 46778888888888852 335566666643211211 123334456788999999777765
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCC-----CCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLP-----GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~d~~G~lwv~~~~ 199 (287)
....+..||+++ .+.|....+ +....+...+.|+||++...
T Consensus 236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 456788888753 333432211 23444666789999998865
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.1 Score=39.10 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCC-cEEEEecCCeEEEEECCc--eEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 3 KNG-VIYTATRDGWIKRLQDGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
++| +|.+|++.|...-|+.-. ++.+...-..++..+....+|.-.|+....|..++- ++- +..+. ...-.
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~----ahh~e 181 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ----AHHAE 181 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh----Hhhhh
Confidence 344 466666666555554111 111111223455477888888766665455666664 332 22211 11124
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-eeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+.++++.++...|++.+. ++.+-.+|..-. +-+.+......+..+.+.|... |.++.+..
T Consensus 182 aIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskD 243 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKD 243 (464)
T ss_pred hhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCC
Confidence 6889999998888887433 455555553212 2222333344566778888765 55554445
Q ss_pred CEEEEEEe
Q 023085 156 FRCRKYWL 163 (287)
Q Consensus 156 ~~l~~~~~ 163 (287)
+.+-.+|.
T Consensus 244 nlVKlWDp 251 (464)
T KOG0284|consen 244 NLVKLWDP 251 (464)
T ss_pred ceeEeecC
Confidence 54444554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.7 Score=35.46 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=67.3
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcc-eeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcc
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS 211 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~ 211 (287)
...+-+.|.|... +.++.+..+++-.||.......+ .+.+.. . .....+.+.+.|. |.+++...
T Consensus 173 devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~-~~vrsiSfHPsGefllvgTdHp----------- 238 (430)
T KOG0640|consen 173 DEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-T-EPVRSISFHPSGEFLLVGTDHP----------- 238 (430)
T ss_pred Ccccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhc-c-ceeeeEeecCCCceEEEecCCC-----------
Confidence 3457788999886 77777888899999987543222 223321 1 1246788889886 55555431
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 212 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
.+-.||-+.-....-..|+.+....++.+.-. .++||++.-.-+.|-.+|
T Consensus 239 ------------------------~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 239 ------------------------TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ------------------------ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 23334433332222233554444555665554 588888887777776554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.7 Score=34.79 Aligned_cols=188 Identities=8% Similarity=0.027 Sum_probs=97.3
Q ss_pred CeEECCCCcE-EEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHL-IICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l-~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.+.+.+-|.+ -++-..+.++++| .+- ...+. +....-+.+++..++|+..++. ..+
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----saH~~pi~sl~WS~dgr~Llts-----------------S~D 86 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----SAHVRPITSLCWSRDGRKLLTS-----------------SRD 86 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccchhhhh----hccccceeEEEecCCCCEeeee-----------------cCC
Confidence 6677888864 4444345688887 443 22221 1123456789999999988862 234
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec----cCCCCCcceeeCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE----NLPGAPDNINLAP 189 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~d~ 189 (287)
..+..+|...|....-..-.+..-+..+.|..+...++.-....-+..+.+.++ ...... ..+..+....+|+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc---eeeccCCCccccccccccccccC
Confidence 456666655454221111111223455667655556655443333333333221 111111 1222345557899
Q ss_pred CCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc-EEEEEECCCCccccceEEEEEe
Q 023085 190 DGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT-IIRNLVDPTGQLMSFVTSGLQV 267 (287)
Q Consensus 190 ~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
.|+ |+.++.+ |++..++.+.. ....+.... ...+-.+.+.
T Consensus 164 ~g~yIitGtsK-----------------------------------Gkllv~~a~t~e~vas~rits---~~~IK~I~~s 205 (405)
T KOG1273|consen 164 RGKYIITGTSK-----------------------------------GKLLVYDAETLECVASFRITS---VQAIKQIIVS 205 (405)
T ss_pred CCCEEEEecCc-----------------------------------ceEEEEecchheeeeeeeech---heeeeEEEEe
Confidence 886 5555554 68888876643 333333211 2234444443
Q ss_pred -CCEEEEEecCCCeEEEEeC
Q 023085 268 -DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 268 -~g~l~i~~~~~~~i~~~~~ 286 (287)
.|+.++.+..-..|..|++
T Consensus 206 ~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred ccCcEEEEecCCceEEEEeh
Confidence 5676666666556666654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.78 E-value=3.8 Score=35.31 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCcEEEEecCCeEEEEE-CCceEEEEee-----------CCcc--ccCeEEC-CCCcEEEEeCCC----------ceEEE
Q 023085 4 NGVIYTATRDGWIKRLQ-DGTWVNWKFI-----------DSQT--LVGLTST-KEGHLIICDNAN----------GLHKV 58 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~~~~~~~~~-----------~~~~--~~~i~~d-~dg~l~v~~~~~----------gi~~~ 58 (287)
++.+||-|..|.|+..+ .+....+..+ .-.| +--+++. +.++||+..+.. .||.+
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 45788899999999998 4443333221 0112 1136776 467899885321 38999
Q ss_pred c-cCC--cEEEeeecCCccccccceEEEcCCC--cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc
Q 023085 59 S-EDG--VENFLSYVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 132 (287)
Q Consensus 59 ~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 132 (287)
| .++ +..+.-. ..+.+|.+..+. .||..+ ...+.|+.+|+.+|+.......
T Consensus 275 D~~t~krv~Ri~l~------~~~~Si~Vsqd~~P~L~~~~-----------------~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPLE------HPIDSIAVSQDDKPLLYALS-----------------AGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEEE------EEESEEEEESSSS-EEEEEE-----------------TTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeCC------CccceEEEccCCCcEEEEEc-----------------CCCCeEEEEeCcCCcEEeehhc
Confidence 9 666 4444211 123456666554 455432 2356899999988876554433
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.69 E-value=6.3 Score=37.10 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=68.0
Q ss_pred CCCCcEE-EEecCCeEEEEE-CCc-eEEEEeeCCccccCeEECCCCcEEEE---eCCCceEEEc-cCCcEEEeeecCCcc
Q 023085 2 DKNGVIY-TATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIIC---DNANGLHKVS-EDGVENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~l~-~~~~~g~i~~~~-~~~-~~~~~~~~~~~~~~i~~d~dg~l~v~---~~~~gi~~~~-~~g~~~~~~~~~~~~ 74 (287)
|+.|.|. .|.-+|.+..|+ .+. -++.-...+.+++.+.+.|+-..|+. .....+..++ .++.+.+. .....
T Consensus 114 ~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~--~~~~H 191 (775)
T KOG0319|consen 114 DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLH--TMILH 191 (775)
T ss_pred cCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHH--HHHhh
Confidence 4555433 333677888888 433 33322222333337777776654333 2223355555 44411110 00112
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccC-----CCEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD-----EDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~l~ 149 (287)
...+.++++..++.-.++. .++.-+..+|..+-+.....+......+.++.++ +.+++
T Consensus 192 ~S~vtsL~~~~d~~~~ls~-----------------~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSV-----------------GRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred hhheeeeeeccCCceEEEe-----------------ccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 3467788888887655531 2334455666543433333344445566665554 33333
Q ss_pred EEeCCCCEEEEEEecC
Q 023085 150 VCESWKFRCRKYWLKG 165 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~ 165 (287)
.+. ..+.+..++.++
T Consensus 255 TaG-~~g~~~~~d~es 269 (775)
T KOG0319|consen 255 TAG-GSGVVQYWDSES 269 (775)
T ss_pred Eec-CCceEEEEeccc
Confidence 332 234444555443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=7.3 Score=36.67 Aligned_cols=220 Identities=11% Similarity=0.039 Sum_probs=109.1
Q ss_pred cEEEEecCCeEEEEECCceEEEEeeC---CccccCeEECCCCcEEEEeC---------CCceEEEccCC-cEEEeeecCC
Q 023085 6 VIYTATRDGWIKRLQDGTWVNWKFID---SQTLVGLTSTKEGHLIICDN---------ANGLHKVSEDG-VENFLSYVNG 72 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~~~~~~~~~~~---~~~~~~i~~d~dg~l~v~~~---------~~gi~~~~~~g-~~~~~~~~~~ 72 (287)
.+|.-. +|.+.+++.+..+...... .... ..++.+||+..+... ...|+..+..+ ..++...
T Consensus 322 ~~~~v~-~G~l~~~~~~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--- 396 (591)
T PRK13616 322 GLHALV-DGSLVSVDGQGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--- 396 (591)
T ss_pred cceEEE-CCeEEEecCCCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC---
Confidence 455443 7777777643333222221 1233 677888986333221 12466665444 4444221
Q ss_pred ccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEE
Q 023085 73 SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 73 ~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
. ....-.++++ +.||+....... .........+.++.+..+.++... .....+..+.++|||..+.+.
T Consensus 397 ~---~~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 H---SLTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred C---CCCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence 1 1234467788 468885321000 000001123456655555444332 112246778899999987776
Q ss_pred eCCCCEEEEEEec---CCC--CcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 152 ESWKFRCRKYWLK---GER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 152 ~~~~~~l~~~~~~---~~~--~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
. +++|+..-+. ++. +.............+..+.--.++.|.+++...
T Consensus 466 ~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~-------------------------- 517 (591)
T PRK13616 466 I--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP-------------------------- 517 (591)
T ss_pred E--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC--------------------------
Confidence 5 3577763332 221 111222221122223556666777787775431
Q ss_pred ccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCC
Q 023085 227 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 278 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 278 (287)
...+++++.+|.....+. .+.....+..+......||+++..+
T Consensus 518 -------~~~v~~v~vDG~~~~~~~--~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 518 -------EHPVWYVNLDGSNSDALP--SRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred -------CCceEEEecCCccccccC--CCCccCceEEEecCCceEEEEcCCc
Confidence 235777877876654432 2222334455555556788886554
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=5.2 Score=37.40 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEeCCC------CEEEEEEecC
Q 023085 114 GQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK------FRCRKYWLKG 165 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~~~------~~l~~~~~~~ 165 (287)
..+.+|||.+++++.+..-. ....+++. -++ .||+..-.. ..+.+||+..
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEE-ECC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 46999999999887665321 11223332 234 488875321 2467888754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.8 Score=35.20 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=31.2
Q ss_pred ccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeec-----CC--------ccccccceEEEcCCCcEEEE
Q 023085 33 QTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYV-----NG--------SKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 33 ~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~-----~~--------~~~~~~~~l~~d~~g~l~v~ 92 (287)
.+. ++++.+|+. ++-+....-|...+ .+| .+.+.+.. .+ .+...+..+++.+||..+++
T Consensus 144 s~~-~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 144 SVT-SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cce-EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 344 788888874 44444333465555 455 21221110 01 11223557899999987775
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=7.4 Score=36.41 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=52.2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..+.+++.-+++ .|+| +..+..|..+..+ ..++.+.....-..|+++-+++. +++.++.
T Consensus 141 asVWAv~~l~e~-~~vT-----------------gsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~--flScsND 199 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVT-----------------GSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSH--FLSCSND 199 (745)
T ss_pred hheeeeeecCCC-cEEe-----------------ccCcceeeeccCC-chhhhhccchhheeeeEEecCCC--eEeecCC
Confidence 356677666666 6665 2334455555432 22333334445567888888776 4455566
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..+++++..+.+. ..+ .+....+..-.++.+.+++..
T Consensus 200 g~Ir~w~~~ge~l~~~--~gh--tn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEM--HGH--TNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred ceEEEEeccCceeeee--ecc--ceEEEEEEecCCCCeEEEecC
Confidence 7788888765432211 111 012233443334457777765
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.15 E-value=4.2 Score=36.59 Aligned_cols=83 Identities=12% Similarity=0.156 Sum_probs=49.4
Q ss_pred CceEEEEeCCCCee-EEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 113 HGQLLKYDPSSNIT-TLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 113 ~~~v~~~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
.|.|..||...... ... ........||+|+|-++.|+++--...+|..||.........-.+... -..+++.++
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~ 261 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC 261 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence 45666676542221 111 122334579999998888888877788999999754322222222211 245888888
Q ss_pred CCEEEEEec
Q 023085 191 GTFWIAIIK 199 (287)
Q Consensus 191 G~lwv~~~~ 199 (287)
|.+.++...
T Consensus 262 G~~L~aG~s 270 (673)
T KOG4378|consen 262 GTYLCAGNS 270 (673)
T ss_pred ceEEEeecC
Confidence 866555544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=7.6 Score=36.42 Aligned_cols=127 Identities=7% Similarity=-0.088 Sum_probs=69.9
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEe---CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE---SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
+.+..+|.++.++..-......|..+.++++|+.+|++. ..+..+...+.... ... ...+ ...--+.-++
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--d~~-vvfn----i~~iea~vkd 287 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--DWV-VVFN----IARIEEAVKA 287 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC--ceE-EEEc----hHHHHHhhhC
Confidence 456677877655433222334778899999999999996 23334444443211 111 1110 0100122234
Q ss_pred CC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC------cEEEEEECCCCccccceEE
Q 023085 191 GT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG------TIIRNLVDPTGQLMSFVTS 263 (287)
Q Consensus 191 G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~~~~~~~~~~~~~~~ 263 (287)
|+ .|++ . +.|..+|... +.+..+.. ++ ......
T Consensus 288 GK~~~V~--g-----------------------------------n~V~VID~~t~~~~~~~v~~yIPV--GK-sPHGV~ 327 (635)
T PRK02888 288 GKFKTIG--G-----------------------------------SKVPVVDGRKAANAGSALTRYVPV--PK-NPHGVN 327 (635)
T ss_pred CCEEEEC--C-----------------------------------CEEEEEECCccccCCcceEEEEEC--CC-CccceE
Confidence 53 4442 1 3677787654 23444443 33 122233
Q ss_pred EEEeCCEEEEEecCCCeEEEEeCC
Q 023085 264 GLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 264 ~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
+.+++.++|+++..++.|+++|+.
T Consensus 328 vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 328 TSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred ECCCCCEEEEeCCCCCcEEEEECh
Confidence 445678899999999999999974
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=93.14 E-value=3.4 Score=37.80 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=57.0
Q ss_pred CCCcEEEEecCCeEEEEE-CCceEEEEeeCCcc---ccCeEECCCCcEEEEeC--------------CCceEEEccCC--
Q 023085 3 KNGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQT---LVGLTSTKEGHLIICDN--------------ANGLHKVSEDG-- 62 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~~~~~~~~~~~~~~---~~~i~~d~dg~l~v~~~--------------~~gi~~~~~~g-- 62 (287)
++|.|++++. ..+..++ .|+.......+... .+.+...++|++++... ...|+.++++|
T Consensus 157 ~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~v 235 (477)
T PF05935_consen 157 PNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEV 235 (477)
T ss_dssp TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-E
T ss_pred CCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCE
Confidence 5788888765 6788888 67755444443322 34899999998665433 12578888777
Q ss_pred cEEEeee--c----C----------------CccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEE
Q 023085 63 VENFLSY--V----N----------------GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119 (287)
Q Consensus 63 ~~~~~~~--~----~----------------~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 119 (287)
+..+... . . ...-.++|++..++ ++.|.++. .....|+.+
T Consensus 236 v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs-----------------R~~s~V~~I 298 (477)
T PF05935_consen 236 VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS-----------------RHQSAVIKI 298 (477)
T ss_dssp EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------------TTT-EEEEE
T ss_pred EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------------CcceEEEEE
Confidence 4443210 0 0 01113577888887 67788852 223478888
Q ss_pred eCCCCeeEEee
Q 023085 120 DPSSNITTLVA 130 (287)
Q Consensus 120 ~~~~~~~~~~~ 130 (287)
|.+++++..+.
T Consensus 299 d~~t~~i~Wil 309 (477)
T PF05935_consen 299 DYRTGKIKWIL 309 (477)
T ss_dssp E-TTS-EEEEE
T ss_pred ECCCCcEEEEe
Confidence 87777776654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.13 E-value=3 Score=35.90 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=76.2
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEE-EeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~-~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
|+-++.++.++.|.-|| .|+.... ........ .++..|+..+++......|-..+ +.| ...+.. ....
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg-----h~~i 362 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG-----HNAI 362 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcccc-----ccce
Confidence 56788888888888888 5554332 22222334 67777877777765555566666 666 333211 1235
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc---------ceEEEccCCCEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---------NGVALSRDEDYV 148 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~l 148 (287)
++.+++..||-++. +...+.++.+|-++|......+....| ...+|+.-|..|
T Consensus 363 intl~~nsD~v~~~------------------G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 363 INTLSVNSDGVLVS------------------GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred eeeeeeccCceEEE------------------cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 67788887776555 234567888887766543332222222 223566556555
Q ss_pred EEEeCCCCEEEEEE
Q 023085 149 VVCESWKFRCRKYW 162 (287)
Q Consensus 149 ~v~~~~~~~l~~~~ 162 (287)
..++. +..|-.|.
T Consensus 425 it~ea-dKtIk~~k 437 (460)
T KOG0285|consen 425 ITGEA-DKTIKMYK 437 (460)
T ss_pred EeccC-CcceEEEe
Confidence 55543 34455444
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.45 Score=27.30 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=29.1
Q ss_pred EEEEEeCCCC-EEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 147 YVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 147 ~l~v~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
.||+++.... +|.+.++++.. .+.+....-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999988 89999887632 3444434445799999873
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=6.3 Score=35.17 Aligned_cols=150 Identities=11% Similarity=0.170 Sum_probs=83.9
Q ss_pred CeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
++.+-.||+|..+-...| +-.+| .+. +..+... ..-++-+.+.++ ++++++.++
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-----~apv~~~~f~~~d~t~l~s~sD---------------- 131 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-----QAPVHVTKFSPQDNTMLVSGSD---------------- 131 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-----cCceeEEEecccCCeEEEecCC----------------
Confidence 667778999988855555 45555 333 2332111 112233444544 456664222
Q ss_pred CCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCC-cceeeCC
Q 023085 112 PHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP-DNINLAP 189 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~d~ 189 (287)
+..+-.+|..+..+.. +.....+.....++|....++++.+..+.|..||..... .....+ ..+.| ..+..=+
T Consensus 132 -d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el---nhg~pVe~vl~lp 206 (487)
T KOG0310|consen 132 -DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL---NHGCPVESVLALP 206 (487)
T ss_pred -CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe---cCCCceeeEEEcC
Confidence 2344455555444421 122233455567778888899999999999999864321 111111 22233 4455556
Q ss_pred CCCEEEEEeccchhHHHHhhcch
Q 023085 190 DGTFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 190 ~G~lwv~~~~~~~~~~~~~~~~~ 212 (287)
.|.+.+++.++..++|++..+..
T Consensus 207 sgs~iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 207 SGSLIASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred CCCEEEEcCCCeEEEEEecCCce
Confidence 77788888777777787775543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.37 Score=27.24 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=27.8
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
|+++.||+++...+.|..+|....+ ....+ .....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i--~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATI--PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEEE--ECCCCCceEEeC
Confidence 5788899999989999999874321 11222 123457777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.33 Score=44.11 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=42.9
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~ 152 (287)
+.+|..|++|+.|+||+.....--...... .+-..+..=++.+++++.+.... ....|.+|+||+++|||.-
T Consensus 499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 499 FNSPDNLAFDPWGRLWIQTDGSGSTLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred ccCCCceEECCCCCEEEEecCCCCccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 445899999999999997433100000000 00012233345566666554322 3456899999999999875
Q ss_pred C
Q 023085 153 S 153 (287)
Q Consensus 153 ~ 153 (287)
.
T Consensus 573 Q 573 (616)
T COG3211 573 Q 573 (616)
T ss_pred c
Confidence 4
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=3.4 Score=38.54 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred CeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEE
Q 023085 37 GLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~ 92 (287)
.+++-|||. |.++. +..++.+| .+| ..++... -..++.++...+|..+.+
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgH-----KDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGH-----KDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCcccccccccc-----cceEEEEEEccCCceecc
Confidence 899999995 66654 56899999 667 5555332 136789999999998885
|
|
| >PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats | Back alignment and domain information |
|---|
Probab=92.77 E-value=8.1 Score=35.75 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=55.5
Q ss_pred CcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC-CCCcccc
Q 023085 182 PDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMS 259 (287)
Q Consensus 182 ~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~~~~~~ 259 (287)
.+..++|. +|+|-|++..... |........+.|+.+|++-+.+..+.. ..| -
T Consensus 273 lnqFsmdE~~G~LRvaTT~~~~-----------------------~~~~~~~s~N~lyVLD~~L~~vG~l~~la~g---E 326 (521)
T PF09826_consen 273 LNQFSMDEYDGYLRVATTSGNW-----------------------WWDSEDTSSNNLYVLDEDLKIVGSLEGLAPG---E 326 (521)
T ss_pred cccccEeccCCEEEEEEecCcc-----------------------cccCCCCceEEEEEECCCCcEeEEccccCCC---c
Confidence 45577887 7899999876210 001113445789999877777776653 122 2
Q ss_pred ceEEEEEeCCEEEEEecCC-CeEEEEeCC
Q 023085 260 FVTSGLQVDNHLYVISLTS-NFIGKVQLS 287 (287)
Q Consensus 260 ~~~~~~~~~g~l~i~~~~~-~~i~~~~~~ 287 (287)
.+.++.+-+.+.|+-|+.. +-+.++|||
T Consensus 327 ~IysvRF~Gd~~Y~VTFrqvDPLfviDLs 355 (521)
T PF09826_consen 327 RIYSVRFMGDRAYLVTFRQVDPLFVIDLS 355 (521)
T ss_pred eEEEEEEeCCeEEEEEEeecCceEEEECC
Confidence 5888888899999999986 888888886
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.59 E-value=3.7 Score=35.40 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=35.8
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+.++..||+.++...........+|+|+|.| +-..|++......|+.||+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 4578888887655332222335689999999 55677777777889999964
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.52 E-value=5.3 Score=33.06 Aligned_cols=175 Identities=10% Similarity=0.042 Sum_probs=89.1
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.++|+|.|.. .+.....|- +|+..- +....+..+ .+.+|.+-+..++..+ ..+-..| ++| +..+ +.
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~-k~---- 92 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATW-KT---- 92 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEe-ec----
Confidence 4567666654 333332222 443322 112223334 6666666655555333 3345555 677 3332 11
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-------CCe-eEEeeccccccceEEEccCC
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-------SNI-TTLVADGFYFANGVALSRDE 145 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~-~~~~~~~~~~~~~i~~~~~~ 145 (287)
...+..+-++..|++.+..... .....+.|..++.. +.+ +..+..+-..+....++|-+
T Consensus 93 -~~~Vk~~~F~~~gn~~l~~tD~------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 93 -NSPVKRVDFSFGGNLILASTDK------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred -CCeeEEEeeccCCcEEEEEehh------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 1234556777778765532110 01112334444432 122 33334444556667789999
Q ss_pred CEEEEEeCCCCEEEEEEecCCC-CcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|.... ..+.|-+||...+. +-+. ...-...+++|.+.++...+++...
T Consensus 160 ~~ii~Gh-e~G~is~~da~~g~~~v~s---~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 160 ETIIAGH-EDGSISIYDARTGKELVDS---DEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred CEEEEec-CCCcEEEEEcccCceeeec---hhhhccccccccccCCcceEEeccc
Confidence 8666555 45789999986431 1111 0011124778888999999998865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.49 E-value=6.5 Score=33.96 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=32.2
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+-+.|-...+..+......|..||....+..+. .. ....++.|+..|++-.|++...
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K-Vi---~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKK-VI---LTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccce-ee---eeccccceecCccccceeeccc
Confidence 44556676655555555667899999753321111 11 1124556666666555555544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.6 Score=35.88 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=57.6
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
++.+.+||.+.+........+.+ .+| +....+......+..+.-...+.+..++++... ...
T Consensus 191 DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~---------------~~~ 255 (398)
T KOG0771|consen 191 DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ---------------FPG 255 (398)
T ss_pred cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEec---------------CCC
Confidence 88999999887775555555555 666 444433222222333333322223356664322 111
Q ss_pred ceE--EEEeCCCC----eeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 114 GQL--LKYDPSSN----ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 114 ~~v--~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+.| ++....++ +.+...........++++++|+.+-+.. ..+.+..|+..
T Consensus 256 ~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT-~dGsVai~~~~ 311 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT-MDGSVAIYDAK 311 (398)
T ss_pred CceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec-cCCcEEEEEec
Confidence 222 22222212 2222222233456778999999666665 46778887754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.38 E-value=7.8 Score=34.60 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=83.6
Q ss_pred eEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CCeeEEeecc
Q 023085 55 LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADG 132 (287)
Q Consensus 55 i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~ 132 (287)
+++++.++ ..++.. ..+.+++|..++.|.|..+.++ +++|-.+... ++.+..+...
T Consensus 343 V~kv~~~~P~~t~~G-----H~g~V~alk~n~tg~LLaS~Sd-----------------D~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFIG-----HHGEVNALKWNPTGSLLASCSD-----------------DGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred EEEecCCCcceeeec-----ccCceEEEEECCCCceEEEecC-----------------CCeeEeeecCCCcchhhhhhh
Confidence 34444455 444422 3457889999999999887544 2233333221 1212111111
Q ss_pred ccccceEEE--------ccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhH
Q 023085 133 FYFANGVAL--------SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARR 204 (287)
Q Consensus 133 ~~~~~~i~~--------~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~ 204 (287)
......+-+ .|..+.+..+....+.+..||+..+. . ...+.... .....+++.++|++-.+..-
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~-i~~f~kH~-~pVysvafS~~g~ylAsGs~----- 472 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-P-IHTLMKHQ-EPVYSVAFSPNGRYLASGSL----- 472 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-e-eEeeccCC-CceEEEEecCCCcEEEecCC-----
Confidence 111111222 23223344444456678888875431 1 11121111 12456888888854333322
Q ss_pred HHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEE
Q 023085 205 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIG 282 (287)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~ 282 (287)
.+.|...+ +-++..+.+...+ .+..++.. +|....+...-+.+-
T Consensus 473 -----------------------------dg~V~iws~~~~~l~~s~~~~~-----~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 473 -----------------------------DGCVHIWSTKTGKLVKSYQGTG-----GIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred -----------------------------CCeeEeccccchheeEeecCCC-----eEEEEEEcCCCCEEEEEecCCCce
Confidence 24555555 3466777776533 35666664 566666766666777
Q ss_pred EEeC
Q 023085 283 KVQL 286 (287)
Q Consensus 283 ~~~~ 286 (287)
++|+
T Consensus 519 vldl 522 (524)
T KOG0273|consen 519 VLDL 522 (524)
T ss_pred EEEe
Confidence 7765
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.16 E-value=12 Score=36.36 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=63.0
Q ss_pred CCCCcEEEEe-cCCeEEEEE-CC--ceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCCcEEEeeecCCccccc
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRF 77 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~-~~--~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g~~~~~~~~~~~~~~~ 77 (287)
++..+|.++. .+..|..|| +. ....++.....-+ -++..|..+|+.|.+.+|+.++- +.. ..
T Consensus 259 hp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk------leR-------Er 324 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK------LER-------ER 324 (1202)
T ss_pred cCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE------Ecc-------cC
Confidence 3444555554 566677777 32 3344444444555 77778888888887777766552 100 11
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee------ccccccceEEEccCCCEEEEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~l~v~ 151 (287)
| +.++..++-+|+ ....+..+|..+.+-..+. ..-..+..+.+.|..+.+.++
T Consensus 325 p-a~~v~~n~LfYv--------------------kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 325 P-AYAVNGNGLFYV--------------------KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred c-eEEEcCCEEEEE--------------------ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 1 234554444555 1335666665542211111 112345678888877767776
Q ss_pred eC
Q 023085 152 ES 153 (287)
Q Consensus 152 ~~ 153 (287)
..
T Consensus 384 s~ 385 (1202)
T KOG0292|consen 384 SN 385 (1202)
T ss_pred ec
Confidence 53
|
|
| >KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.3 Score=38.60 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
..+.++-|.+.||++....+-|++||++++
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 356788899999999988888999998765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.3 Score=40.28 Aligned_cols=139 Identities=9% Similarity=0.106 Sum_probs=71.9
Q ss_pred CCcEEEEecCCeEEEEE--CCceE-EE---EeeC--------CccccCeEECCCC-cEEEEeCCCceEEEc-cCCcEEEe
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWV-NW---KFID--------SQTLVGLTSTKEG-HLIICDNANGLHKVS-EDGVENFL 67 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~-~~---~~~~--------~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g~~~~~ 67 (287)
.|-|.+|+.+|.|-.|+ ..+.. .. .... ..+. ++.+..+| .+-|++..+.++.+| +.....+.
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 45666777778787787 22211 11 1111 1133 67777778 788888766799998 55411111
Q ss_pred e-ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCC
Q 023085 68 S-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 68 ~-~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 146 (287)
. .....+...+..+-.+.+..++-+| ..-+-.||+.+|+.-....+....|.+|+-|++.
T Consensus 266 kdh~~e~pi~~l~~~~~~~q~~v~S~D-------------------k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQNKVVSMD-------------------KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred cccCCccceeeecccccCCCceEEecc-------------------hHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence 1 1111222122221112222333322 1123345666666544444455578889888888
Q ss_pred EEEEEeCCCCEEEEEEe
Q 023085 147 YVVVCESWKFRCRKYWL 163 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~ 163 (287)
.++++.. +..+..|-+
T Consensus 327 m~f~Ane-~~~m~~yyi 342 (703)
T KOG2321|consen 327 MFFTANE-SSKMHTYYI 342 (703)
T ss_pred eEEEecC-CCcceeEEc
Confidence 6666664 455666655
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.94 E-value=3.5 Score=35.50 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=48.6
Q ss_pred cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCc--eEEEc-cCC--cEEEeeecCCccccccceEEEc
Q 023085 12 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG--LHKVS-EDG--VENFLSYVNGSKLRFANDVVEA 84 (287)
Q Consensus 12 ~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g--i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d 84 (287)
..|.|..|| +-+.......-..+...+++.++|.+.++...+| |.++. ++| +.++.. |.....+..++++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---G~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---GTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC---CceeeEEEEEEEC
Confidence 347777787 2222222222223343799999999988866666 44455 777 455432 3335678899999
Q ss_pred CCCcEEEE
Q 023085 85 SDGSLYFT 92 (287)
Q Consensus 85 ~~g~l~v~ 92 (287)
+++.+..+
T Consensus 228 ~ds~~L~~ 235 (391)
T KOG2110|consen 228 PDSQFLAA 235 (391)
T ss_pred CCCCeEEE
Confidence 99986654
|
|
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.68 Score=37.43 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCCCCcEEEEecCCeEEEEE---CCce-------EEEEeeC-CccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEE-
Q 023085 1 MDKNGVIYTATRDGWIKRLQ---DGTW-------VNWKFID-SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF- 66 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~---~~~~-------~~~~~~~-~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~- 66 (287)
+|+.|.||..+.+|.|+|.. ++.. +.+.... +... .+..+++|-||+.+....+++.. +++ -..+
T Consensus 88 ~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~ 166 (229)
T PF14517_consen 88 FDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWL 166 (229)
T ss_dssp E-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEETTE-EEEE---SSTT--HH
T ss_pred ecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEcCCCceEEeCCCCCCCCccc
Confidence 47889999988999998876 2221 1111111 1223 67789999999998543366663 332 1111
Q ss_pred --eeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC
Q 023085 67 --LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 123 (287)
Q Consensus 67 --~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 123 (287)
.....+........|...++|+||..+ ..+.|||..+.+
T Consensus 167 ~~s~~v~~~gw~~~~~i~~~~~g~L~~V~------------------~~G~lyr~~~p~ 207 (229)
T PF14517_consen 167 SGSGLVGGGGWDSFHFIFFSPDGNLWAVK------------------SNGKLYRGRPPQ 207 (229)
T ss_dssp HH-EEEESSSGGGEEEEEE-TTS-EEEE-------------------ETTEEEEES---
T ss_pred cccceeccCCcccceEEeeCCCCcEEEEe------------------cCCEEeccCCcc
Confidence 111111122235567788888988852 346788776543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.59 E-value=9.3 Score=33.83 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=75.0
Q ss_pred ccCeEECCCCcEEEEeCCCceEEEc--cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 35 LVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
++..++.|||.|+.+-...|++++- ..+ ...+. + .-..+..+.+..+|...++ +
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp----g-ht~~vk~i~FsENGY~Lat-----------------~ 407 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP----G-HTGPVKAISFSENGYWLAT-----------------A 407 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC----C-CCCceeEEEeccCceEEEE-----------------E
Confidence 3367889999998886566766654 333 33321 2 2235678889888864443 1
Q ss_pred CCCceEEEEeCCCCe-eEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 111 KPHGQLLKYDPSSNI-TTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~-~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
..++.|..||.+.-+ +..+. ......+.+.|+.-|.+|-++. ..-.|+.+............+. ...|..+++.+.
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg 485 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFG 485 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEecccccceeeehhh-hcccccceeeec
Confidence 234558888875332 22222 2233467888998898777762 2234555553222222222222 222345666665
Q ss_pred CCCCEEEEEe
Q 023085 189 PDGTFWIAII 198 (287)
Q Consensus 189 ~~G~lwv~~~ 198 (287)
... -++++.
T Consensus 486 ~~a-q~l~s~ 494 (506)
T KOG0289|consen 486 EHA-QYLAST 494 (506)
T ss_pred ccc-eEEeec
Confidence 443 344443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.56 E-value=7.8 Score=32.88 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=27.0
Q ss_pred ccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 131 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 131 ~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
..+..+-||+++|.+ .+||++...+....|+.+
T Consensus 20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGN 52 (336)
T ss_pred ccccccceeEecCCC-CEEEecCCcceEEeecCC
Confidence 345678899999977 499999888888888875
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.38 E-value=7.3 Score=32.19 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=59.9
Q ss_pred cEEEEecCCeEEEEEC--CceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cC-C-cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQD--GTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-ED-G-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~--~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~-g-~~~~~~~~~~~~~~~~~ 79 (287)
.+.++..+..|.-++. -+.....+..-..+ .+...-++.+++.+.+.| |-++. +. . +..+... .....
T Consensus 120 ~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH-----~snCi 193 (313)
T KOG1407|consen 120 YIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH-----PSNCI 193 (313)
T ss_pred EEEEecCcccEEEEEecccceeehhcccceee-eeeecCCCCEEEEecCCceEEEEeccccccccccccC-----CcceE
Confidence 4555555556666662 11111111111223 556667788888886644 33333 22 2 3332211 23456
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc-ceEEEccCCCEEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVV 149 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l~ 149 (287)
+|.++++|+-+.+ +..+..+-.+|++.---.+....+.+| ..+.|+.+|++|-
T Consensus 194 cI~f~p~GryfA~-----------------GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 194 CIEFDPDGRYFAT-----------------GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEECCCCceEee-----------------ccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 7899999996664 222333444554322222222233344 5677888998443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.31 E-value=10 Score=33.77 Aligned_cols=203 Identities=14% Similarity=0.079 Sum_probs=93.4
Q ss_pred CeEECCCCcEE-EE-eCCC----ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEE-EcCCCCCCCcceeeee
Q 023085 37 GLTSTKEGHLI-IC-DNAN----GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDI 107 (287)
Q Consensus 37 ~i~~d~dg~l~-v~-~~~~----gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v-~~~~~~~~~~~~~~~~ 107 (287)
...+.+||+++ ++ +.++ .+..+| ++| ...- ... ......+...++++.++ +.... .....
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~---~~~~~~~~W~~d~~~~~y~~~~~-~~~~~----- 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIE---NPKFSSVSWSDDGKGFFYTRFDE-DQRTS----- 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEE---EEESEEEEECTTSSEEEEEECST-TTSS------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccc---ccccceEEEeCCCCEEEEEEeCc-ccccc-----
Confidence 35677899743 33 2221 277777 677 2221 100 11222377788876444 32110 00000
Q ss_pred eccCCCceEEEEeCCCCeeE--Eeecccc--c-cceEEEccCCCEEEEEeCCC---CEEEEEEecCC--CCcceeEEecc
Q 023085 108 LEGKPHGQLLKYDPSSNITT--LVADGFY--F-ANGVALSRDEDYVVVCESWK---FRCRKYWLKGE--RKGKLETFAEN 177 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~--~-~~~i~~~~~~~~l~v~~~~~---~~l~~~~~~~~--~~~~~~~~~~~ 177 (287)
.......|+++...+..-. .+..... . ..++..++|++.+++..... ..++.++.... .......+...
T Consensus 197 -~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 197 -DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred -cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 0001346888876554322 2222211 2 33667889999888765433 35777776542 12233444322
Q ss_pred CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc----EEEEE-EC
Q 023085 178 LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT----IIRNL-VD 252 (287)
Q Consensus 178 ~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~----~~~~~-~~ 252 (287)
..+ ....+....+.+|+.+.. ..+.+.|++++.+.. ....+ ..
T Consensus 276 ~~~-~~~~v~~~~~~~yi~Tn~-------------------------------~a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 276 EDG-VEYYVDHHGDRLYILTND-------------------------------DAPNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp SSS--EEEEEEETTEEEEEE-T-------------------------------T-TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCc-eEEEEEccCCEEEEeeCC-------------------------------CCCCcEEEEecccccccccceeEEcCC
Confidence 221 111222235678888875 334578888865422 22233 22
Q ss_pred CCCccccceEEEEEeCCEEEEEecCCC--eEEEEeC
Q 023085 253 PTGQLMSFVTSGLQVDNHLYVISLTSN--FIGKVQL 286 (287)
Q Consensus 253 ~~~~~~~~~~~~~~~~g~l~i~~~~~~--~i~~~~~ 286 (287)
.++ ..+..+...+++|.+....+. +|.++++
T Consensus 324 ~~~---~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 324 DED---VSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp SSS---EEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCc---eeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 222 134555555677766665433 5555554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.25 E-value=11 Score=33.83 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=83.3
Q ss_pred cEEEEe-CCCceEEEc-cCC--cEEEeeecCC------ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 45 HLIICD-NANGLHKVS-EDG--VENFLSYVNG------SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 45 ~l~v~~-~~~gi~~~~-~~g--~~~~~~~~~~------~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.||+-. ..+.|+++| .+. .-.+...... .....|..+.+-++|.++|+..+. ..+.+.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd-----------~~G~g~G 157 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGD-----------ADGNGPG 157 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEE-----------TTS-S--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccC-----------CCCCCCC
Confidence 355553 235799999 433 2222222111 123567788888899999974331 1234557
Q ss_pred eEEEEeCCCCeeEEeec----cccccceEEEccCCCEEEEEeC-------------------CCCEEEEEEecCCCCcce
Q 023085 115 QLLKYDPSSNITTLVAD----GFYFANGVALSRDEDYVVVCES-------------------WKFRCRKYWLKGERKGKL 171 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~v~~~-------------------~~~~l~~~~~~~~~~~~~ 171 (287)
+++.+|.++-++.-.-. ...+.+.+.+.|..+.|.-++. .+++|..||....+. .
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~--~ 235 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL--L 235 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE--E
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE--e
Confidence 88888876544433211 1233455666676664444433 245788888754321 1
Q ss_pred eEEeccCC-CCCcceee--CCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCCc
Q 023085 172 ETFAENLP-GAPDNINL--APDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGT 245 (287)
Q Consensus 172 ~~~~~~~~-~~~~~i~~--d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g~ 245 (287)
+.+.-... ..|-.+.+ |++- .=|+++.- .+.|+++- .+|.
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL----------------------------------ss~i~~~~k~~~g~ 281 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL----------------------------------SSSIWRFYKDDDGE 281 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE------------------------------------EEEEEEEE-ETTE
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEec----------------------------------cceEEEEEEcCCCC
Confidence 11110011 12333333 4433 35555543 23555553 2343
Q ss_pred E--EEEEECCCC----cc-----------ccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 246 I--IRNLVDPTG----QL-----------MSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 246 ~--~~~~~~~~~----~~-----------~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
. ..+++.+.. -. ...++.+.. +|..||+.+...+-|.+||+|
T Consensus 282 W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 282 WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 2 222333221 11 134566655 578999999999999999986
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A | Back alignment and domain information |
|---|
Probab=91.03 E-value=7.1 Score=31.68 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=62.4
Q ss_pred CeEECCCCcEEEEeCCCceEEEc--cCCcEEEee---ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS--EDGVENFLS---YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~--~~g~~~~~~---~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.|+..|+|+||+.. ..++++.. .++...... .........-..|.+++.|.||...
T Consensus 38 ~i~~~P~g~lY~I~-~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~------------------ 98 (229)
T PF14517_consen 38 DIAAGPNGRLYAIR-NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVT------------------ 98 (229)
T ss_dssp EEEE-TTS-EEEEE-TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEE------------------
T ss_pred eEEEcCCceEEEEE-CCceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEec------------------
Confidence 57788999999987 44788883 222111100 0000102244579999999999853
Q ss_pred CCceEEEEeCCCC-eeE-------Ee-eccccccceEEEccCCCEEEEEeCCCCEEEEEEe-cCC--CCcceeEEec-cC
Q 023085 112 PHGQLLKYDPSSN-ITT-------LV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL-KGE--RKGKLETFAE-NL 178 (287)
Q Consensus 112 ~~~~v~~~~~~~~-~~~-------~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~-~~~--~~~~~~~~~~-~~ 178 (287)
..+.|+|..+.+. ... .+ ...-.....+-++++|- ||..+.. +++++... +.. .-......+. ..
T Consensus 99 ~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~d-g~~~~~~~p~~~~~~W~~~s~~v~~~g 176 (229)
T PF14517_consen 99 PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITPD-GRLYRRYRPDGGSDRWLSGSGLVGGGG 176 (229)
T ss_dssp TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEETT-E-EEEE---SSTT--HHHH-EEEESSS
T ss_pred cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcCC-CceEEeCCCCCCCCccccccceeccCC
Confidence 3467777754321 111 11 11122334566677774 8988854 46777742 221 1111111111 10
Q ss_pred CCCCcceeeCCCCCEEEEE
Q 023085 179 PGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 179 ~~~~~~i~~d~~G~lwv~~ 197 (287)
=.....|...++|+||..-
T Consensus 177 w~~~~~i~~~~~g~L~~V~ 195 (229)
T PF14517_consen 177 WDSFHFIFFSPDGNLWAVK 195 (229)
T ss_dssp GGGEEEEEE-TTS-EEEE-
T ss_pred cccceEEeeCCCCcEEEEe
Confidence 0124557778889999883
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=91.00 E-value=6.1 Score=38.59 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCCC-cEEEEecCCeEEEEE-CC--------------ceEEE------EeeCCccccCeEECCCCcEEEEeCC-CceEEE
Q 023085 2 DKNG-VIYTATRDGWIKRLQ-DG--------------TWVNW------KFIDSQTLVGLTSTKEGHLIICDNA-NGLHKV 58 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~-~~--------------~~~~~------~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~ 58 (287)
.+|| .|++|+++.-|..|. .. ..+.| ........ ++..+|++.+.+.-.. ..|..+
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecccceEEEE
Confidence 4567 688888776666665 21 01112 11223344 7788899988777433 567888
Q ss_pred c-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeEEeecccc
Q 023085 59 S-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFY 134 (287)
Q Consensus 59 ~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~ 134 (287)
+ .+. .+.+.. ....+-++.+|+-|..+.+.++ +..|-.+...+ +-.+.+..++.
T Consensus 157 n~~tF~~~~vl~~-----H~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 157 NAKTFELLKVLRG-----HQSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred ccccceeeeeeec-----ccccccceEECCccCeeeeecC-----------------CceEEEEEcccceeeEeeccchh
Confidence 7 444 333321 2346789999999997775322 23333333222 22333333332
Q ss_pred ------ccceEEEccCCCEEEEEeCCCC
Q 023085 135 ------FANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 135 ------~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
+..-+.++|||++|-.....++
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccC
Confidence 2234678999998777766443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.96 E-value=11 Score=33.65 Aligned_cols=128 Identities=14% Similarity=0.040 Sum_probs=73.4
Q ss_pred EEEEecCCeEEEEECCc--eEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEE
Q 023085 7 IYTATRDGWIKRLQDGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVV 82 (287)
Q Consensus 7 l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 82 (287)
+..|+.+|.|.-|+... ........+.|+..+..-+.|.+.++..+..+-++| .+| ...... ....-.++++.
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~---~~H~KtVTcL~ 245 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM---FNHNKTVTCLR 245 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh---hcccceEEEEE
Confidence 44555888888888221 222233345666577788999888876555677777 445 222111 11234678888
Q ss_pred EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 83 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 83 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
...+++-.++. .-++.|-.|+..+-++..-..-....-.++++|+++.+++.-++
T Consensus 246 l~s~~~rLlS~-----------------sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 246 LASDSTRLLSG-----------------SLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred eecCCceEeec-----------------ccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 88888766642 23455666664323332211111122456788999988888554
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.92 E-value=9.2 Score=33.59 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=58.1
Q ss_pred CeEECCCC-cEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEG-HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg-~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
++.+..+| +|..+....-+-.+| ++. ..++... .-..-...+.+.+.+++....+ +..
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-g~k~asDwtrvvfSpd~~YvaA-----------------GS~ 407 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-GFKCASDWTRVVFSPDGSYVAA-----------------GSA 407 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeecc-ccccccccceeEECCCCceeee-----------------ccC
Confidence 66677778 455554445567777 554 3333221 1111223567888888886554 345
Q ss_pred CceEEEEeCCCCeeEEeecccc---ccceEEEccCCCEEEEEe
Q 023085 113 HGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVVVCE 152 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~l~v~~ 152 (287)
++.|+.++..++++........ ....++|+|-|..|.-++
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 6789999988888877654322 234556777666555443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.61 E-value=11 Score=32.89 Aligned_cols=83 Identities=12% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCceEEEEeCCCCeeEEeeccccccc-eEEEccCCCEEEEEeCC----CCEEEEEEec-CCCCcceeEEeccCCCCCc-c
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDYVVVCESW----KFRCRKYWLK-GERKGKLETFAENLPGAPD-N 184 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~l~v~~~~----~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 184 (287)
+...|+.++..++..+.+..+.-... -+.++++++.+|+.... ...|++.+++ +. ..+.+. ...... .
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT--~~~~~~~~ 332 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLT--CEDGDHYS 332 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESS--TTSSTTEE
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEecc--CCCCCceE
Confidence 34689999988777665554433333 35688998889988764 3478888876 32 222222 222233 6
Q ss_pred eeeCCCCCEEEEEec
Q 023085 185 INLAPDGTFWIAIIK 199 (287)
Q Consensus 185 i~~d~~G~lwv~~~~ 199 (287)
+.+.++|+.++-+..
T Consensus 333 ~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 333 ASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEE-TTSSEEEEEEE
T ss_pred EEECCCCCEEEEEEc
Confidence 888999988877755
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.52 E-value=16 Score=34.60 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=65.7
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.++++++|...++.....|..++ .++ .. +... .......+.++++.+++...++- ....
T Consensus 24 ~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~-~~ed~d~ita~~l~~d~~~L~~a-----------------~rs~ 84 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSG-SNEDEDEITALALTPDEEVLVTA-----------------SRSQ 84 (775)
T ss_pred ceeECCCCCEEEEecCceEEEEEccCCcee-cccC-CccchhhhheeeecCCccEEEEe-----------------eccc
Confidence 36789999887777667788888 777 43 2211 12233467888999988765531 1223
Q ss_pred eEEEEeCCCCeeEEeec--cccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 115 QLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
-+-.|..+++++..... .-...-.++++|-+. +..+....+++.++|+++
T Consensus 85 llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~ 136 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKN 136 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeC
Confidence 34444555565433222 223335667888874 555544567888888865
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.20 E-value=17 Score=34.56 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=83.7
Q ss_pred cEEEEecCCeEEEEE--CC-ceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc------cCC-cEEEeeecCC--
Q 023085 6 VIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS------EDG-VENFLSYVNG-- 72 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~-~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~------~~g-~~~~~~~~~~-- 72 (287)
.+.+|+.+|.+..|+ .. -.+.+....+..+ .++..|||.-.++..+ +.+-.++ ..| ..........
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHDGAIW-SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhcccccee-eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 456677788888777 22 2233333344556 8888999976665434 3222221 123 2221110000
Q ss_pred -ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc--eEEEEeCCCCeeEEeecccccc-ceEEEccCCCEE
Q 023085 73 -SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG--QLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYV 148 (287)
Q Consensus 73 -~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l 148 (287)
.-...+.++.+.+||.+.... --++ .||.+|. -++..-.-+-..| -.+-++||.+ +
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVs-----------------LLdnTVkVyflDt--lKFflsLYGHkLPV~smDIS~DSk-l 564 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVS-----------------LLDNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPDSK-L 564 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEE-----------------eccCeEEEEEecc--eeeeeeecccccceeEEeccCCcC-e
Confidence 112356678899999876631 1123 3555543 3332211122223 3455889998 6
Q ss_pred EEEeCCCCEEEEEEecCCCCcce--eEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 149 VVCESWKFRCRKYWLKGERKGKL--ETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.++.+....+-.|-++ ++.+ ..++.. . ....+.+-|+-+++.++..
T Consensus 565 ivTgSADKnVKiWGLd---FGDCHKS~fAHd-D-Svm~V~F~P~~~~FFt~gK 612 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLD---FGDCHKSFFAHD-D-SVMSVQFLPKTHLFFTCGK 612 (888)
T ss_pred EEeccCCCceEEeccc---cchhhhhhhccc-C-ceeEEEEcccceeEEEecC
Confidence 6666555555555443 2322 122211 1 1334556676667777765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.67 E-value=17 Score=33.57 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=62.5
Q ss_pred CeEEC-CCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTST-KEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d-~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+|.++ +.-.||++..+..|||++ +.| +.++.... ..++.+.+..-..|..+ ++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~~hgLla~-----------------Gt~ 195 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-----GELNVVSINEEHGLLAC-----------------GTE 195 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcccccccccccccc-----ccceeeeecCccceEEe-----------------ccc
Confidence 34444 345788887677899999 778 66654321 23455555554444443 445
Q ss_pred CceEEEEeCCCCee-EEeec-----------cccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 113 HGQLLKYDPSSNIT-TLVAD-----------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 113 ~~~v~~~~~~~~~~-~~~~~-----------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.|.|-.|||.+.+. ..+.. ....+..+.|+.+|-.+-|.. ..+.++.||+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-s~G~v~iyDLR 258 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-STGSVLIYDLR 258 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec-cCCcEEEEEcc
Confidence 67788888875542 22211 112355677877665555554 45779999974
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=12 Score=31.90 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=27.6
Q ss_pred CceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 113 HGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 113 ~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
...|..|+.+ |++ ..+.......+-.+++|+|+.+-++.... -+.+|.
T Consensus 208 dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE 256 (420)
T KOG2096|consen 208 DTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWE 256 (420)
T ss_pred CCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEE
Confidence 3457777777 553 33433333344567899999776665443 244433
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=89.60 E-value=2.8 Score=35.93 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=60.8
Q ss_pred eEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 38 LTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 38 i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
+.++-+.++.+.... ..+.+.| .+| +.++.... ..+-.+.+. +| +.++.+- ...
T Consensus 241 LCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHc-----eaVLhlrf~-ng-~mvtcSk---------------Drs 298 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC-----EAVLHLRFS-NG-YMVTCSK---------------DRS 298 (499)
T ss_pred EeeeccceEEEecCCCceEEEEeccCCchhhHHhhhc-----ceeEEEEEe-CC-EEEEecC---------------Cce
Confidence 455667777776433 4566677 666 44432211 123334333 23 2333211 123
Q ss_pred ceEEEEeCCCCe-eEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-C
Q 023085 114 GQLLKYDPSSNI-TTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-D 190 (287)
Q Consensus 114 ~~v~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~ 190 (287)
..||+++..+.. ...+ .......|-+-|+ .+ ..|+.++...|..++.++. .++....+.-.||++-. .
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYR 369 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeeccc--cc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhcc
Confidence 356666533221 1111 1223445555555 44 4444455566777775432 22334555667777754 4
Q ss_pred CCEEEEE
Q 023085 191 GTFWIAI 197 (287)
Q Consensus 191 G~lwv~~ 197 (287)
|++-|+.
T Consensus 370 ~rlvVSG 376 (499)
T KOG0281|consen 370 DRLVVSG 376 (499)
T ss_pred CeEEEec
Confidence 5555554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.49 E-value=11 Score=31.20 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=58.7
Q ss_pred ccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+..++.++. ..++++- .+...+.++|..+++............-++++|+|+++.+.+ ..
T Consensus 66 svdql~w~~~~~d~~ata-----------------s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kd 127 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATA-----------------SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KD 127 (313)
T ss_pred chhhheeCCCCCcceEEe-----------------cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-Cc
Confidence 5667778864 4566642 234467777766555433322223345578899999777776 45
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..+|....+......+. -..+.++...++++++.+.+
T Consensus 128 D~it~id~r~~~~~~~~~~~----~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQFK----FEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred ccEEEEEecccceeehhccc----ceeeeeeecCCCCEEEEecC
Confidence 67888886532222111111 12345666667778888776
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.04 E-value=13 Score=32.33 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=56.6
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..++.|...+||..|++-+. .+..+..+|++++....+. .......-+.++||+..++.+...
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 45677888889999996432 3446777888877655543 333334456799999977777643
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
.+++......+.. .+.+. ...++..+-+-++.|.
T Consensus 260 --avfrlw~e~q~wt-~erw~-lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 260 --AVFRLWQENQSWT-KERWI-LGSGRVQTACWSPCGS 293 (445)
T ss_pred --ceeeeehhcccce-eccee-ccCCceeeeeecCCCC
Confidence 3444442222211 12222 1233455556677775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.02 E-value=23 Score=34.19 Aligned_cols=138 Identities=13% Similarity=0.154 Sum_probs=74.7
Q ss_pred CeEECCCCcE-EEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+++++.=|+. +++...+-|-+++ ..| ...+... ...-..+.++++|.-+++.++. ..
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~--~ah~~~V~gla~D~~n~~~vsa-----------------~~ 513 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS--PAHKGEVTGLAVDGTNRLLVSA-----------------GA 513 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccccC--ccccCceeEEEecCCCceEEEc-----------------cC
Confidence 6777888875 4554444588888 777 3333211 1123467899999989888862 22
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
.|-+-.++-+.+.+..-......+.++...-... +++.....-.|..+|....+. .+.|. .-.+..+.+++.+||+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~-gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFW-GHGNRITDMTFSPDGR 589 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhh-ccccceeeeEeCCCCc
Confidence 4555566655333222112222334444443333 444444456788888643221 12222 1223577899999996
Q ss_pred EEEEE
Q 023085 193 FWIAI 197 (287)
Q Consensus 193 lwv~~ 197 (287)
.-++.
T Consensus 590 Wlisa 594 (910)
T KOG1539|consen 590 WLISA 594 (910)
T ss_pred EEEEe
Confidence 44443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.93 E-value=4.9 Score=37.32 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=30.2
Q ss_pred eEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 115 QLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 115 ~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.|-.+|..++.. ..+.......-+++|+|+|+.+-.. ...++|.+|...
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtV-cKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATV-CKDGTLRVYEPR 750 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeee-ecCceEEEeCCC
Confidence 444455443332 2233344556789999999854433 456889998864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.93 E-value=14 Score=35.09 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=80.1
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcE-EEEeCCCceEEE-ccCC--cEEEee--ec--CCccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKV-SEDG--VENFLS--YV--NGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~-~~~g--~~~~~~--~~--~~~~~ 75 (287)
.+.-|+-+|.+..|+ +.+...|........ ++.+.|||.. .|++. .|..++ +..+ +..-.. .. .....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 344455788888888 667777766665555 8899999975 55564 465444 4444 221111 11 11112
Q ss_pred cccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc---ceEEEccCCCEEEE
Q 023085 76 RFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVV 150 (287)
Q Consensus 76 ~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~l~v 150 (287)
..++++.+.+. ..+.||. .+..|-.||..+..+.....++... ....|+.||+.+..
T Consensus 502 ~rITG~Q~~p~~~~~vLVTS------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTS------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred ceeeeeEecCCCCCeEEEec------------------CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 25777777643 2477752 3456777776434433333333222 33457889997777
Q ss_pred EeCCCCEEEEEEec
Q 023085 151 CESWKFRCRKYWLK 164 (287)
Q Consensus 151 ~~~~~~~l~~~~~~ 164 (287)
+. ....++.|..+
T Consensus 564 ~s-eDs~VYiW~~~ 576 (712)
T KOG0283|consen 564 AS-EDSWVYIWKND 576 (712)
T ss_pred ee-cCceEEEEeCC
Confidence 66 56788888864
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.61 E-value=4.6 Score=35.95 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 112 PHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
..|.|-.|.|.+.+. ..+.......++|+++++|+++..+. ....+-.||+..- .....+.+ +-...++++...
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~--~ql~t~~t--p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNF--YQLHTYRT--PHPASNLSLSQK 345 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeeccc--cccceeec--CCCccccccccc
Confidence 344555555543331 11233345568899999998655544 3456777887431 22222221 222455666666
Q ss_pred CCEEEEE
Q 023085 191 GTFWIAI 197 (287)
Q Consensus 191 G~lwv~~ 197 (287)
|.|-++.
T Consensus 346 glLA~~~ 352 (545)
T KOG1272|consen 346 GLLALSY 352 (545)
T ss_pred cceeeec
Confidence 6554444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.61 E-value=14 Score=33.37 Aligned_cols=135 Identities=14% Similarity=0.062 Sum_probs=66.0
Q ss_pred cCCeEEEEE---CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCc-eEEEccCCcEEEeeecCCccccccceEEEcCC
Q 023085 12 RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 12 ~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+|.|...+ +.+.+.+.++.+..+.-+.+.+.-+ |+......| +..+|.+|..+.... ......-..+|.+.+-
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPS 219 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCC
Confidence 556666665 2333444444333321233444443 332222334 444445552222111 1111122356777776
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.. |+++. .-+..|+.||..+.+.......-..-..++|.++|.+|.... ..++|+.||+..
T Consensus 220 ne~l~vsV-----------------G~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 220 NEALLVSV-----------------GYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRS 281 (673)
T ss_pred ccceEEEe-----------------cccceEEEeecccccccceeeecCCcceeeecCCceEEEeec-CCceEEEEeccc
Confidence 54 55542 124578888876443222111111225678999997666665 468899999864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.21 E-value=20 Score=32.73 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=63.5
Q ss_pred eEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC---CceEEEccCC--cEEEeeecCCccccccceEEEcCCCc
Q 023085 15 WIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS 88 (287)
Q Consensus 15 ~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~---~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~ 88 (287)
.++.+. +|....+......|+++....++|+=+..-++ .-+-.++..+ +-.+ ..+ -=|.+.+.+.|+
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~eg----pRN~~~fnp~g~ 324 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEG----PRNTAFFNPHGN 324 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCC----CccceEECCCCC
Confidence 456665 55555555554556668888888864443322 3466666444 2222 111 125678899998
Q ss_pred EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEEccCCCEEEEEeCC
Q 023085 89 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 89 l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
+.+-- | ++...|.+-.+|..+.+ .+.. ......-..|+|||++++.+.+.
T Consensus 325 ii~lA-----G---------FGNL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 325 IILLA-----G---------FGNLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEe-----e---------cCCCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEecc
Confidence 65521 0 12334556666654322 1111 11223345689999988888764
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.21 E-value=18 Score=32.21 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=21.6
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
..+...|+|.+.. .++....+.|..||.
T Consensus 371 sV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 371 SVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred eeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 4567789998886 555567788999996
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=88.08 E-value=2.9 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=19.4
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEc
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALS 142 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (287)
.+.|..+|+.+++..........|.+++++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 567888998777654443445667777653
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=87.95 E-value=14 Score=30.59 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=28.8
Q ss_pred EEEEeCCCCeeEEeeccccc----cceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 116 LLKYDPSSNITTLVADGFYF----ANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
.+.+|..+++-..+.-++.. ...+.+.|..+.||+-+ ++.+..|++
T Consensus 202 ~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 202 FYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred EEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 55778776554433222322 33467889888899987 456777775
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=87.88 E-value=28 Score=33.94 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.6
Q ss_pred CCcEEEEeCCCceEEEc-cCC
Q 023085 43 EGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 43 dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++....++.+| .+|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG 214 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG 214 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC
Confidence 67999998766799999 777
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.41 E-value=28 Score=33.48 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=59.2
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc-cceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~v~~~~~ 155 (287)
.++++++..+|...++ +...+.+.++...+++ +.+.+.+.. ...++++||+. +|......
T Consensus 253 ~V~~L~fS~~G~~LlS-----------------GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~D 313 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS-----------------GGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLED 313 (792)
T ss_pred ccceeEEecCCceEee-----------------cccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecC
Confidence 5778888888876664 2345566677666666 445444443 46889999998 55544556
Q ss_pred CEEEEEEecCC----CCcceeEE----eccCCCCCcceeeCC-CCCEEEEEe
Q 023085 156 FRCRKYWLKGE----RKGKLETF----AENLPGAPDNINLAP-DGTFWIAII 198 (287)
Q Consensus 156 ~~l~~~~~~~~----~~~~~~~~----~~~~~~~~~~i~~d~-~G~lwv~~~ 198 (287)
+.|..+...+. .+...... .....+.+.++++|+ -+.+-+...
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 77776665321 11111111 011234567888888 344444333
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.40 E-value=15 Score=30.18 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=46.1
Q ss_pred cccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEE-ccCCCEEEE
Q 023085 74 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVAL-SRDEDYVVV 150 (287)
Q Consensus 74 ~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~~~l~v 150 (287)
+.+.+|+|.+|+ .+.++++ .+++.++.+|.++|++..... ...+.+.++- ...++ + +
T Consensus 113 evPeINam~ldP~enSi~~A------------------gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-i-l 172 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFA------------------GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-I-L 172 (325)
T ss_pred cCCccceeEeccCCCcEEEe------------------cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-e-e
Confidence 456789999996 4677774 356789999999999877543 3344455543 33344 2 3
Q ss_pred EeCCCCEEEEEEecC
Q 023085 151 CESWKFRCRKYWLKG 165 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~ 165 (287)
+....+.+..+|..+
T Consensus 173 sG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKT 187 (325)
T ss_pred ecCCCccEEEEeccc
Confidence 333456677777643
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.39 E-value=21 Score=32.13 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=34.6
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC--EEEEEEecCCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLKGER 167 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~--~l~~~~~~~~~ 167 (287)
..+++++.++++...+..-........|+|||+.|.++....+ .|+.+|+.+..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 4578888776665555442222334568999998888776544 47777776543
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.66 Score=25.97 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=16.9
Q ss_pred CCcceeeCCCCCEEEEEec
Q 023085 181 APDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 181 ~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+|++|++|++|++...
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 4788999999999999876
|
SBBP stands for Seven Bladed Beta Propeller. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.76 E-value=28 Score=32.68 Aligned_cols=171 Identities=12% Similarity=0.010 Sum_probs=79.2
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
|+|+-..-+|.|.-|| +++...-....+.+...|++.+.+. +.|+-..+-++.++ ..+ ++.-...... -..+-
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq--~sRvL 158 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ--KSRVL 158 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc--cceEE
Confidence 4455444566666666 4443333333333333888877774 56663222233333 333 3222111111 13456
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-e---ccccc-cc----eEEEccCCCEEEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-A---DGFYF-AN----GVALSRDEDYVVV 150 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---~~~~~-~~----~i~~~~~~~~l~v 150 (287)
++..++++.-.++ +..++.+-.+|..++....+ . ..+.. -. ++.+..++. +.-
T Consensus 159 slsw~~~~~~i~~-----------------Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~s 220 (691)
T KOG2048|consen 159 SLSWNPTGTKIAG-----------------GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IAS 220 (691)
T ss_pred EEEecCCccEEEe-----------------cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEE
Confidence 7888888873442 23344566667655543221 1 11111 12 333334443 333
Q ss_pred EeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEec
Q 023085 151 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~ 199 (287)
.+ ..+.+..||....++-+. +. ........++.+.++ .++.+...
T Consensus 221 gD-S~G~V~FWd~~~gTLiqS--~~-~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 221 GD-SAGTVTFWDSIFGTLIQS--HS-CHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred ec-CCceEEEEcccCcchhhh--hh-hhhcceeEEEEcCCCCeEEEccCC
Confidence 33 356677777543322111 10 111235567777664 57766665
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=86.44 E-value=2.6 Score=28.53 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=31.9
Q ss_pred CCeEEEEECCceEEEEeeCCccccCeEECCCC-cEEEEeCC-CceEEEc
Q 023085 13 DGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS 59 (287)
Q Consensus 13 ~g~i~~~~~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~-~gi~~~~ 59 (287)
-+.|..|+.++.......-..|+ ||++++++ .|||++.. +.|.++.
T Consensus 35 ~~~Vvyyd~~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 35 WGNVVYYDGKEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CceEEEEeCCEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence 46677777545555555556788 99999988 58999755 4566654
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.28 E-value=20 Score=30.53 Aligned_cols=138 Identities=9% Similarity=0.031 Sum_probs=62.1
Q ss_pred CCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cC-C-cEEEeeecCCcccc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-G-VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~-g-~~~~~~~~~~~~~~ 76 (287)
+.|.|-++- .++-+.-|| .|+..........+. .+.+++.|.-|+.....+|-++. .+ . +..+... .
T Consensus 137 PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~------~ 209 (362)
T KOG0294|consen 137 PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP------K 209 (362)
T ss_pred CCCceEEEEcCCceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc------c
Confidence 344444433 333344445 444433333333344 56667777644443344444443 11 2 2222110 2
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEE-Ec-cCCCEEEEEeC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVA-LS-RDEDYVVVCES 153 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~-~~-~~~~~l~v~~~ 153 (287)
.+..+.+...+.|.++ ..+..+-.+|.+++. ...+...-....++. +. |++. +.++-+
T Consensus 210 r~l~~~~l~~~~L~vG------------------~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaS 270 (362)
T KOG0294|consen 210 RILCATFLDGSELLVG------------------GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE-YLVTAS 270 (362)
T ss_pred cceeeeecCCceEEEe------------------cCCceEEEeccCCCccceeeecchhheeeeEEEecCCce-EEEEec
Confidence 3445556666666663 223345555654322 111222222334454 33 4444 455555
Q ss_pred CCCEEEEEEecCC
Q 023085 154 WKFRCRKYWLKGE 166 (287)
Q Consensus 154 ~~~~l~~~~~~~~ 166 (287)
..+.|.+||++..
T Consensus 271 SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 271 SDGFIKVWDIDME 283 (362)
T ss_pred cCceEEEEEcccc
Confidence 5677888887643
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=86.21 E-value=23 Score=31.31 Aligned_cols=142 Identities=11% Similarity=-0.042 Sum_probs=75.7
Q ss_pred CCcEEEEecCCeEEEEE-CC-ceE-------EEEe-eCCccccCeEECCC-CcEEEEeCC-CceEEEc-cCC-cEEEeee
Q 023085 4 NGVIYTATRDGWIKRLQ-DG-TWV-------NWKF-IDSQTLVGLTSTKE-GHLIICDNA-NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~-~~~-------~~~~-~~~~~~~~i~~d~d-g~l~v~~~~-~gi~~~~-~~g-~~~~~~~ 69 (287)
.|.|.-++.++.|+.++ +. ... .+.. ...... ..++.+. ..|+.+-.. ..+...| +.+ .++....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 56777777888898888 21 110 0111 111112 3344332 244444222 3355555 432 1111000
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC--eeEEeeccccccceEEEccCCCE
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDY 147 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 147 (287)
......++++++.+.+...++. +..++.|..+|++.- .+..+...-.....+.|+|..+.
T Consensus 269 --~ah~~~vn~~~fnp~~~~ilAT----------------~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 269 --KAHSAEVNCVAFNPFNEFILAT----------------GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred --cccCCceeEEEeCCCCCceEEe----------------ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc
Confidence 1112457888888876544432 234678888887522 12222222334456789999888
Q ss_pred EEEEeCCCCEEEEEEec
Q 023085 148 VVVCESWKFRCRKYWLK 164 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~ 164 (287)
+..+....+++..+|+.
T Consensus 331 vLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLS 347 (422)
T ss_pred eeEecccCCcEEEEecc
Confidence 88887777889999986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.19 E-value=20 Score=30.57 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=37.1
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEEEecCC-CCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..|--+..+|.|+.|-++ .+..|..|....+ .....+. .-.+.+.+|..+++|+.-+++..
T Consensus 332 ~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g~~~~~~e~---~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVS--FGSDLKVFASEDGKDYPELED---IHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCceEEEeCCCCcEEEee--cCCceEEEEcccCccchhHHH---hhcCceeeEEecCCCcEEeeecc
Confidence 456678889999865555 3556777665432 1111111 12235678999999987776654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.10 E-value=18 Score=34.03 Aligned_cols=128 Identities=9% Similarity=0.005 Sum_probs=67.1
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC-----CEEEEEEecCCCCcceeEEeccCCCCCcceee-
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-----FRCRKYWLKGERKGKLETFAENLPGAPDNINL- 187 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 187 (287)
..+++||+.++++..++.-...-.+.....=+..||+..-.. ..+.+||+...+........ ..-.+...
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~----~~r~~~gv~ 424 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML----TRRSGHGVA 424 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC----cceeeeEEE
Confidence 579999999888877554322222222222233578765322 24778887543322211111 01112222
Q ss_pred CCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe
Q 023085 188 APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV 267 (287)
Q Consensus 188 d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
--+|.||+.......+ ..-..+.+|||..+.-..... -.......+++.-
T Consensus 425 ~~~g~iYi~GG~~~~~----------------------------~~l~sve~YDP~t~~W~~~~~--M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDGSS----------------------------NCLNSVECYDPETNTWTLIAP--MNTRRSGFGVAVL 474 (571)
T ss_pred EECCEEEEEcCcCCCc----------------------------cccceEEEEcCCCCceeecCC--cccccccceEEEE
Confidence 2378899988642100 012478999998776665442 1111223445556
Q ss_pred CCEEEEEe
Q 023085 268 DNHLYVIS 275 (287)
Q Consensus 268 ~g~l~i~~ 275 (287)
++.||+-+
T Consensus 475 ~~~iYvvG 482 (571)
T KOG4441|consen 475 NGKIYVVG 482 (571)
T ss_pred CCEEEEEC
Confidence 88888754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.85 E-value=30 Score=32.18 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=45.2
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcch
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~ 212 (287)
.+..+.|.|-.-.|+|+.. ..|..||+....+.+ ... +..-....|++++.| ||.+++...+..++++...++
T Consensus 568 ~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvK--kL~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVK--KLL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred ceeEEEecCCCceEEEEec--cceEEEehhHHHHHH--HHh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 4556678887778899864 457788865321111 000 111145678888876 788888777767777665544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.82 E-value=25 Score=31.27 Aligned_cols=107 Identities=13% Similarity=-0.009 Sum_probs=54.9
Q ss_pred ceEEEcCCCcEEE-E-cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--
Q 023085 79 NDVVEASDGSLYF-T-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 154 (287)
Q Consensus 79 ~~l~~d~~g~l~v-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~-- 154 (287)
....+.++|+.++ + +.+ +.....|+.+|.++|+...-.-......+++|.++++.+|.+...
T Consensus 127 ~~~~~Spdg~~la~~~s~~--------------G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG--------------GSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEETTTSSEEEEEEEET--------------TSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTT
T ss_pred eeeeECCCCCEEEEEecCC--------------CCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcc
Confidence 3567778887544 2 111 222346889999888654321111122238899998887777643
Q ss_pred --------CCEEEEEEecCCCCcceeEEeccCCCC-CcceeeCCCCC-EEEEEec
Q 023085 155 --------KFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGT-FWIAIIK 199 (287)
Q Consensus 155 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~d~~G~-lwv~~~~ 199 (287)
...|+++.+..+.......|....+.. .-++..+++|+ |.+....
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc
Confidence 234777776543222223333222111 23566677876 4444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=85.77 E-value=28 Score=31.85 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=69.8
Q ss_pred cEEEEec-----CCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeecCCcccccc
Q 023085 6 VIYTATR-----DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFA 78 (287)
Q Consensus 6 ~l~~~~~-----~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~~ 78 (287)
.||+.+. ....+.+| +|..+............+...++|++++... ..+..+|..| .........+. ...=
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~-~~~H 192 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGY-YDFH 192 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTE-E-B-
T ss_pred cEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcc-cccc
Confidence 4555543 35566677 7776544333222220266789999998874 6788898667 32222221111 1122
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--------cc-----------------
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------GF----------------- 133 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------~~----------------- 133 (287)
+++...++|++.+........... . ........|..+| .+|++..... ..
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~-~---~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDED-K---DVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-----EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred cccEECCCCCEEEEEeecccccCC-C---CccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 567788899876642210000000 0 0011123466666 4465443210 00
Q ss_pred ---cccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 134 ---YFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 134 ---~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
...|++.+++....|.++.+..+.|++++..+
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 12467888886667889888778999999543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.57 E-value=38 Score=33.19 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=49.3
Q ss_pred ceEEEEeCCCCeeEE--eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 114 GQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
-.+||++.. +.++. .-.......++.|+|..+ +.++++....|.+||++.+ ...+.|.. .+.+==-++..+..
T Consensus 230 VKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR--t~v~tfrr-endRFW~laahP~l 304 (1202)
T KOG0292|consen 230 VKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR--TSVQTFRR-ENDRFWILAAHPEL 304 (1202)
T ss_pred eeEEEeccc-cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc--cceeeeec-cCCeEEEEEecCCc
Confidence 468998753 44433 223445567888999776 7888877788999998643 22333321 11111125666777
Q ss_pred CEEEEEec
Q 023085 192 TFWIAIIK 199 (287)
Q Consensus 192 ~lwv~~~~ 199 (287)
|||.+...
T Consensus 305 NLfAAgHD 312 (1202)
T KOG0292|consen 305 NLFAAGHD 312 (1202)
T ss_pred ceeeeecC
Confidence 78777766
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.43 E-value=21 Score=30.12 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=69.7
Q ss_pred ccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 33 QTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
..+ -+.++|+|.++++... +.|+..+..| .+.+.... .....+.++...++++..++.
T Consensus 49 eI~-~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--gHsgAVM~l~~~~d~s~i~S~----------------- 108 (338)
T KOG0265|consen 49 EIY-TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--GHSGAVMELHGMRDGSHILSC----------------- 108 (338)
T ss_pred eEE-EEEECCCCCeEeecCCcceEEEEeccccccceeeec--cccceeEeeeeccCCCEEEEe-----------------
Confidence 344 6788999998887533 4566665444 33322211 123466778888899888863
Q ss_pred CCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 111 KPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
..+..|..+|.++|+.... .......|.+.-.-.|-.|..+.+..+.+..||+.
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 2356788899888875443 33344555554333455566666777788888875
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.35 E-value=14 Score=32.30 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=50.0
Q ss_pred EEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccce
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~ 80 (287)
+-.+|..+.+..|+ .++...... ..-+|.+.+..+++|+ +|+++....+..|| +.+ .... ...+. -.++..
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~kg~-tGsirs 295 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GLKGI-TGSIRS 295 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--ccCCc-cCCcce
Confidence 44445677888888 232221111 1123444788899995 78888767799999 666 2221 11121 247788
Q ss_pred EEEcCCCcEEEE
Q 023085 81 VVEASDGSLYFT 92 (287)
Q Consensus 81 l~~d~~g~l~v~ 92 (287)
|.+++.+.+..+
T Consensus 296 ih~hp~~~~las 307 (412)
T KOG3881|consen 296 IHCHPTHPVLAS 307 (412)
T ss_pred EEEcCCCceEEe
Confidence 999988777664
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.24 E-value=18 Score=29.06 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=72.7
Q ss_pred ceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 114 GQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
..+.+++..+|+...- +++-.+..|+.-. +..+|.-....+.-++||.+. +.....+ ..+|.-=|++.|.+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t--~~~lg~~--~y~GeGWgLt~d~~ 141 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADT--LEELGRF--SYEGEGWGLTSDDK 141 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHH--hhhhccc--ccCCcceeeecCCc
Confidence 4577788776664321 2223455677644 667888887777777888653 1222222 12222335666644
Q ss_pred CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc-EEEEEE-CCCCccccceEEEEEeC
Q 023085 191 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT-IIRNLV-DPTGQLMSFVTSGLQVD 268 (287)
Q Consensus 191 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~~~-~~~~~~~~~~~~~~~~~ 268 (287)
+||++... ..+...||+.- ....+. ..+|.+......+--.+
T Consensus 142 -~LimsdGs-----------------------------------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd 185 (262)
T COG3823 142 -NLIMSDGS-----------------------------------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD 185 (262)
T ss_pred -ceEeeCCc-----------------------------------eEEEecCHHHhhhcceEEEEECCeecccccceeeec
Confidence 49988876 35555566531 111111 12455555555555567
Q ss_pred CEEEEEecCCCeEEEEeC
Q 023085 269 NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 269 g~l~i~~~~~~~i~~~~~ 286 (287)
|.||.--+-.++|.+++-
T Consensus 186 G~lyANVw~t~~I~rI~p 203 (262)
T COG3823 186 GELYANVWQTTRIARIDP 203 (262)
T ss_pred cEEEEeeeeecceEEEcC
Confidence 777776666677777653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.87 E-value=31 Score=31.57 Aligned_cols=157 Identities=9% Similarity=0.046 Sum_probs=74.5
Q ss_pred eEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+.+|+ .+.+......+. ... .-+..-+|.||+.... ..+.+++ .++ ++.+.+.. .+.... + ++.-+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~--~~r~~~-~-~~~~~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL--KPRCNP-A-VASIN 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC--CCCccc-E-EEEEC
Confidence 466777 444544332211 111 1222347889887432 2367777 444 55543221 111111 2 23336
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccce-EEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
|.||+.... ......+.+|||.+++++..+.......+ .+..-++ .||+.. +...+|+++.
T Consensus 363 g~IYviGG~--------------~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 363 NVIYVIGGH--------------SETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLVG---RNAEFYCESS 424 (480)
T ss_pred CEEEEecCc--------------CCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEEC---CceEEecCCC
Confidence 899995211 00123578899998888765432111111 1222334 588874 3467788654
Q ss_pred CCCcceeEEeccCCC--CCcceeeCCCCCEEEEEec
Q 023085 166 ERKGKLETFAENLPG--APDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 166 ~~~~~~~~~~~~~~~--~~~~i~~d~~G~lwv~~~~ 199 (287)
++ ..... ..+. .-.+++. -+|+||+....
T Consensus 425 ~~---W~~~~-~m~~~r~~~~~~v-~~~~IYviGG~ 455 (480)
T PHA02790 425 NT---WTLID-DPIYPRDNPELII-VDNKLLLIGGF 455 (480)
T ss_pred Cc---EeEcC-CCCCCccccEEEE-ECCEEEEECCc
Confidence 32 22211 1110 1112332 26778888754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=84.74 E-value=29 Score=31.15 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=72.6
Q ss_pred CCCc-EEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccc
Q 023085 3 KNGV-IYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 3 ~~G~-l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
.+|. |-.|..+|.+..|+ +|...........|+-.+....+|...++... +.+..+| .+| ..+...... .
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-----~ 319 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-----A 319 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-----C
Confidence 3564 44556777777777 55544332222233326777788876555433 4466677 567 555433221 1
Q ss_pred c-ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 78 A-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~-~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
| .++..-.+.. +++.. ....-.|++++.+ ..+..+...-...+.+-++|.+. |..+.+...
T Consensus 320 ~~lDVdW~~~~~-F~ts~---------------td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~ 381 (524)
T KOG0273|consen 320 PALDVDWQSNDE-FATSS---------------TDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDG 381 (524)
T ss_pred CccceEEecCce-EeecC---------------CCceEEEEEecCC-CcceeeecccCceEEEEECCCCc-eEEEecCCC
Confidence 2 1221111112 22110 0112346667654 44555555555678889999997 556656666
Q ss_pred EEEEEEec
Q 023085 157 RCRKYWLK 164 (287)
Q Consensus 157 ~l~~~~~~ 164 (287)
.+..|...
T Consensus 382 TlkiWs~~ 389 (524)
T KOG0273|consen 382 TLKIWSMG 389 (524)
T ss_pred eeEeeecC
Confidence 67666643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=84.34 E-value=15 Score=32.02 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=72.3
Q ss_pred ccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 35 LVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
++.+...+.+.+|-+.+.+.|-+.| .+| ...+... ...+++...+...|.++..
T Consensus 263 Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gs----------------- 319 (423)
T KOG0313|consen 263 VSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGS----------------- 319 (423)
T ss_pred eeeEEEcCCCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecC-----------------
Confidence 3355566667788888888888888 666 4444221 2456777777777877532
Q ss_pred CCceEEEEeCCCCeeEEe----eccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 112 PHGQLLKYDPSSNITTLV----ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
....+..+||+++.-+.+ ........++.++|....++++.+..+.+..+|..
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 234577788876543332 22334567888999998999999988888888864
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.95 E-value=24 Score=29.42 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=42.1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC--
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-- 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~-- 153 (287)
..+.++.+|.+....++ +..+..+-.+|-++|+.............+-|+.+|+.+.++..
T Consensus 53 GavW~~Did~~s~~liT-----------------GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLIT-----------------GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred ceEEEEEecCCcceeee-----------------ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh
Confidence 35677777777666665 23345555566666765544443344567778888875444332
Q ss_pred --CCCEEEEEEec
Q 023085 154 --WKFRCRKYWLK 164 (287)
Q Consensus 154 --~~~~l~~~~~~ 164 (287)
....|..|++.
T Consensus 116 mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 116 MGYTCFVSVFDIR 128 (327)
T ss_pred cCcceEEEEEEcc
Confidence 12346677765
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=83.70 E-value=43 Score=33.13 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+.++..++++.+.++.+ -++.|..++..+-+.. .+......+.|+.|||-|++ ++...
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky--~ASqs 190 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY--FASQS 190 (942)
T ss_pred CccceeccCCCccEEEEec-----------------ccceEEEEccccceeeeeeecccccccceEECCccCe--eeeec
Confidence 4567788888888888632 2567888887655433 33344567899999999983 44433
Q ss_pred C-CEEEEEE
Q 023085 155 K-FRCRKYW 162 (287)
Q Consensus 155 ~-~~l~~~~ 162 (287)
. ..|..|.
T Consensus 191 dDrtikvwr 199 (942)
T KOG0973|consen 191 DDRTLKVWR 199 (942)
T ss_pred CCceEEEEE
Confidence 3 4455554
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=83.05 E-value=6 Score=22.04 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=21.0
Q ss_pred CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 244 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 244 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
|+.++.+..+. . ........+++||+++. .+.|..+|.
T Consensus 1 G~~~W~~~~~~-~---~~~~~~v~~g~vyv~~~-dg~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTGG-P---IWSSPAVAGGRVYVGTG-DGNLYALDA 38 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-T-TSEEEEEET
T ss_pred CceeEEEECCC-C---cCcCCEEECCEEEEEcC-CCEEEEEeC
Confidence 45666666532 1 22445667899999997 567777764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.74 E-value=31 Score=29.93 Aligned_cols=135 Identities=11% Similarity=0.069 Sum_probs=65.4
Q ss_pred EEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcEEEEeCCC-ceEEEccCC-cEEEeeecCCccccccceEEE
Q 023085 9 TATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNAN-GLHKVSEDG-VENFLSYVNGSKLRFANDVVE 83 (287)
Q Consensus 9 ~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~~-gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~ 83 (287)
.++.++.|..++ +|+.+.... ...... .|+++..|++.+..... .+...+-++ .+.+... ..+...+..+.+
T Consensus 125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~-di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~--~gh~h~vS~V~f 201 (406)
T KOG0295|consen 125 SASEDATIKVFDTETGELERSLRGHTDSVF-DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL--IGHEHGVSSVFF 201 (406)
T ss_pred EecCCceEEEEEccchhhhhhhhcccccee-EEEEecCccEEEecCCccchhheeHHHHHHHHHHh--cCcccceeeEEE
Confidence 445788888888 676644322 222345 88999999877765332 122222111 1111100 011234556666
Q ss_pred cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 84 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 84 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
-+.|...++.+ .+..+..++-+++. +..+........-+.+.-||. |..+.+...+|..+-
T Consensus 202 ~P~gd~ilS~s-----------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 202 LPLGDHILSCS-----------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWV 263 (406)
T ss_pred EecCCeeeecc-----------------cccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEE
Confidence 66665444321 22334444434343 333333333444444555554 555555555666655
Q ss_pred ec
Q 023085 163 LK 164 (287)
Q Consensus 163 ~~ 164 (287)
..
T Consensus 264 ~~ 265 (406)
T KOG0295|consen 264 VA 265 (406)
T ss_pred ec
Confidence 54
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.53 E-value=29 Score=30.80 Aligned_cols=128 Identities=9% Similarity=0.003 Sum_probs=67.0
Q ss_pred CCeEEEEE--CCceEEEEeeCCc-c--ccCeEECCCCcEEEEeCC------------CceEEEc-cCC-cEEEeeecCCc
Q 023085 13 DGWIKRLQ--DGTWVNWKFIDSQ-T--LVGLTSTKEGHLIICDNA------------NGLHKVS-EDG-VENFLSYVNGS 73 (287)
Q Consensus 13 ~g~i~~~~--~~~~~~~~~~~~~-~--~~~i~~d~dg~l~v~~~~------------~gi~~~~-~~g-~~~~~~~~~~~ 73 (287)
.+.+++|+ +.++..+..+.+- | .+.++.-+.|.||+-... .-++.++ .+. ++.+... .++
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~P 175 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGP 175 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCC
Confidence 35788888 6677777654321 1 215666788888876311 1367777 666 6666432 123
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc---ceEE--EccCCCEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVA--LSRDEDYV 148 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~i~--~~~~~~~l 148 (287)
...+-+.|++-+.--|.|...+ .....-.--+-||.+|.++-++..+......| .|.+ ..|++. +
T Consensus 176 S~RSGHRMvawK~~lilFGGFh---------d~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i 245 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFH---------DSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-I 245 (521)
T ss_pred CCCccceeEEeeeeEEEEccee---------cCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc-E
Confidence 3334455655544444442111 00000001235888888877766654433223 3544 457777 4
Q ss_pred EEE
Q 023085 149 VVC 151 (287)
Q Consensus 149 ~v~ 151 (287)
||.
T Consensus 246 ~vy 248 (521)
T KOG1230|consen 246 VVY 248 (521)
T ss_pred EEE
Confidence 544
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=81.75 E-value=29 Score=28.79 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=28.8
Q ss_pred EEEEeCCCCeeEEeeccc----cccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 116 LLKYDPSSNITTLVADGF----YFANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
-+.+|..+++...+.-.+ .....+.+.|..+.||+-+. +.+..|++
T Consensus 197 ~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 197 FYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred EEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 456787766554332222 23345778898888999874 55666665
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=81.10 E-value=30 Score=28.62 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=71.9
Q ss_pred CeEECCCCcEEEE-e---CCCceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIIC-D---NANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~-~---~~~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
..++.+||+.+++ . ....++....++ ...+.. +. .+..-.++++|.+|+.+.. .
T Consensus 28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---g~---~l~~PS~d~~g~~W~v~~~---------------~ 86 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---GG---SLTRPSWDPDGWVWTVDDG---------------S 86 (253)
T ss_pred ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---CC---ccccccccCCCCEEEEEcC---------------C
Confidence 7888999975444 3 123466665444 444321 22 2334468889999997432 1
Q ss_pred CCceEEEEeCCCCeeEEe--e-cccc-ccceEEEccCCCEEEEEeC--CCCEEEEEEecCCCCc------ceeEEeccCC
Q 023085 112 PHGQLLKYDPSSNITTLV--A-DGFY-FANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKG------KLETFAENLP 179 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~--~-~~~~-~~~~i~~~~~~~~l~v~~~--~~~~l~~~~~~~~~~~------~~~~~~~~~~ 179 (287)
....+.+ +..++..... . .... ....+.++|||..+-+.-. .+.+|+...+....-+ ..........
T Consensus 87 ~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 87 GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 1112222 2222332222 1 1122 4567889999987665542 3467777665421111 1111111111
Q ss_pred CCCcceeeCCCCCEEEEEec
Q 023085 180 GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 180 ~~~~~i~~d~~G~lwv~~~~ 199 (287)
.....+.--.++.|.+....
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CcceeeeecCCCEEEEEeCC
Confidence 23455666677888887765
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.63 E-value=48 Score=30.70 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=63.6
Q ss_pred eEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEEEeCC------CceEEEc-cCC-cEEEeeecCCccccccceEEE
Q 023085 15 WIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVE 83 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~ 83 (287)
.+++|+ ++++......+ .....+.+ .-+++||+.... ..+.+++ .++ ++...+.. .+. .-.++ +
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp--~~r-~~~~~-~ 386 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI--FPR-YNPCV-V 386 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC--cCC-ccceE-E
Confidence 467777 55554443221 11111222 236788877422 1367788 455 55543211 111 11122 2
Q ss_pred cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccce-EEEccCCCEEEEEeCCC-------
Q 023085 84 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESWK------- 155 (287)
Q Consensus 84 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l~v~~~~~------- 155 (287)
.-++.+|+.....+. ......+++||+.++++...........+ .+...++ .+|+..-..
T Consensus 387 ~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~ 454 (534)
T PHA03098 387 NVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG-KIYVIGGISYIDNIKV 454 (534)
T ss_pred EECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecCCCCccccCceEEEECC-EEEEECCccCCCCCcc
Confidence 236789985221000 01124689999998888765432111111 1222234 478764211
Q ss_pred -CEEEEEEecCC
Q 023085 156 -FRCRKYWLKGE 166 (287)
Q Consensus 156 -~~l~~~~~~~~ 166 (287)
..+++||+...
T Consensus 455 ~~~v~~yd~~~~ 466 (534)
T PHA03098 455 YNIVESYNPVTN 466 (534)
T ss_pred cceEEEecCCCC
Confidence 23788887543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 287 | ||||
| 2fp8_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 1e-10 | ||
| 2v91_A | 302 | Structure Of Strictosidine Synthase In Complex With | 2e-10 | ||
| 2fpb_A | 322 | Structure Of Strictosidine Synthase, The Biosynthet | 4e-10 |
| >pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
| >pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302 | Back alignment and structure |
|
| >pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 2e-66
Identities = 64/311 (20%), Positives = 110/311 (35%), Gaps = 51/311 (16%)
Query: 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLV-------------------GLT- 39
N YT+ +DG + + + + +V++ + ++
Sbjct: 28 STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87
Query: 40 STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSS 96
+ + L I D L V +G + V+G ++ V V+ G +YFT S+
Sbjct: 88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVST 147
Query: 97 KYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156
Y + G+L+KYDPS+ TTL+ + G +S D +V+V E
Sbjct: 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSH 207
Query: 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 216
+ KYWL+G +KG E +P P NI DG FW++
Sbjct: 208 QIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSS------------------- 246
Query: 217 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL 276
+ + I E G I+ + P + D LY+ +L
Sbjct: 247 -----SEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTL 301
Query: 277 TSNFIGKVQLS 287
+G +
Sbjct: 302 FHGSVGILVYD 312
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 7e-31
Identities = 46/292 (15%), Positives = 87/292 (29%), Gaps = 32/292 (10%)
Query: 2 DKNGVIY---TATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-- 54
DK+G I ++ + L+ T F + +L++ ++
Sbjct: 80 DKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSS 139
Query: 55 ----LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110
E+ L + L ND+V Y T P+ ++ G
Sbjct: 140 TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199
Query: 111 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK 170
+ Y P+ +VA+GF FANG+ +S D YV + E + Y
Sbjct: 200 LAWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT 257
Query: 171 LETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229
+ DNI++ P G W+ R + VL
Sbjct: 258 PLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVL----------- 305
Query: 230 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFI 281
+ + + + + G ++ T L + ++ +
Sbjct: 306 ------RIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKAL 351
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 1e-22
Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 37 GLTSTKEGHLIIC-DNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTV 93
G ++ + + D GL V DG E G +++ ND +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT- 133
Query: 94 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVV 149
+ + G + + + V F F NG+A+ D ++
Sbjct: 134 -APAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLI 191
Query: 150 VCESWKFRCRKYWLKGE----RKGKLETFAENLPGAPDNINLAPDGTFWIA 196
V E+ + Y +KG K G D ++ D +A
Sbjct: 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-17
Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 8/167 (4%)
Query: 37 GLTSTKEGHLIICDNANGLH-KVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVS 94
G + L+ C++ + DG + G +L ND++ A DG+++FT
Sbjct: 90 GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDP 149
Query: 95 SSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES- 153
H + + P + NG+A S DE + V ++
Sbjct: 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMADLDHPNGLAFSPDEQTLYVSQTP 208
Query: 154 ----WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196
+ + FA G PD + G W +
Sbjct: 209 EQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS 255
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 2e-16
Identities = 38/204 (18%), Positives = 62/204 (30%), Gaps = 28/204 (13%)
Query: 3 KNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHK 57
G I+ + + K+G L +C G+
Sbjct: 64 FEGNIFKINPET-------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116
Query: 58 VSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 117
+E+G + S +D+V S G YFT P G +
Sbjct: 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-----------DFRGYSTNPLGGVY 165
Query: 118 KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK-----GERKGKLE 172
P T + ANG+ALS DE + V E+ R + L+ + G
Sbjct: 166 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225
Query: 173 TFAENLPGAPDNINLAPDGTFWIA 196
+ PD+ + D ++A
Sbjct: 226 PYYFTGHEGPDSCCIDSDDNLYVA 249
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 9e-15
Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 37 GLTSTKEGHLIICDNANG-LHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTV 93
G K+GHLI C + L + E G E+ G KL NDV A DGSL+F+
Sbjct: 73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSD 132
Query: 94 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153
+ E P + + P + + NG+A + +V ++
Sbjct: 133 PTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAPIRDRVKPNGLAFLPSGNLLVS-DT 190
Query: 154 WKFRCRKYWLKGERKGKL---ETFAENLPGAPDNINLAPDGTFWIA 196
+Y L G+ PG D + + G W +
Sbjct: 191 GDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 3e-12
Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 16/200 (8%)
Query: 2 DKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKV 58
+G I+ T G I + DG ++ + GL T G L+ + V
Sbjct: 40 APDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVV 98
Query: 59 SEDGVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 117
S + + + F N + SD S + I +P G +
Sbjct: 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL-----IDVVQPSGSIW 153
Query: 118 KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAE 176
P + + F L R +++ V + K + + K G+ E F E
Sbjct: 154 LEHPMLARSNSESV---FPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE 210
Query: 177 NLPGAPDNINLAPDGTFWIA 196
D+ +G + A
Sbjct: 211 --QTNIDDFAFDVEGNLYGA 228
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-07
Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 38/226 (16%)
Query: 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 136
F ++ A DG+++ T + G+++ P N A
Sbjct: 33 FLENLASAPDGTIFVT-------------NH----EVGEIVSITPDGNQQI-HATVEGKV 74
Query: 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAPDGTFWI 195
+G+A + + D V W + G +ET N I D +
Sbjct: 75 SGLAFTSNGDLVAT--GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 132
Query: 196 A--------IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII 247
A +I + I ++ + + + G + E ++
Sbjct: 133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL 192
Query: 248 RNLVDPTGQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 284
R VD T + D +LY + N + ++
Sbjct: 193 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-11
Identities = 41/264 (15%), Positives = 83/264 (31%), Gaps = 37/264 (14%)
Query: 2 DKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNANG-LHK 57
+G ++ T I R+ + G + + + G+T G + + + +
Sbjct: 65 SSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGR 124
Query: 58 VSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 117
+++DG Y +K + + + SD +L+FT + + +
Sbjct: 125 ITDDG--KIREYELPNKGSYPSFITLGSDNALWFTENQN-----------------NAIG 165
Query: 118 KYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE 176
+ S +IT G+ D D + E + + G++ F
Sbjct: 166 RITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRI----TTSGEITEFKI 220
Query: 177 NLPGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 235
P A P I W + A ++ L S+ +I+ I G
Sbjct: 221 PTPNARPHAITAGAGIDLWFT--EWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGET 278
Query: 236 HLIHVAED-GTIIRNLVDPTGQLM 258
I A + I + + M
Sbjct: 279 --IWFAMECDKIGK--LTLIKDNM 298
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 40/263 (15%), Positives = 80/263 (30%), Gaps = 45/263 (17%)
Query: 37 GLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 95
G+T + +G + I + + ++ DG Y + + +SDG ++FT ++
Sbjct: 19 GITVSDKGKVWITQHKANMISCINLDG--KITEYPLPTPDAKVMCLTISSDGEVWFTENA 76
Query: 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW 154
+ ++ + I + + G+ + + E
Sbjct: 77 A-----------------NKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMN 118
Query: 155 KFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKL 213
R + GK+ + G+ P I L D W + + S
Sbjct: 119 GNRIGRI----TDDGKIREYELPNKGSYPSFITLGSDNALWFTE--NQNNAIGRITESGD 172
Query: 214 IKHVLAAYPKLFSQFITLGG-GAHLIHVAE--DGTIIRNLVDPTGQLMSFVT-------S 263
I P IT G A + E I R + +G++ F
Sbjct: 173 ITEFKIPTPASGPVGITKGNDDA--LWFVEIIGNKIGR--ITTSGEITEFKIPTPNARPH 228
Query: 264 GLQVD--NHLYVISLTSNFIGKV 284
+ L+ +N IG++
Sbjct: 229 AITAGAGIDLWFTEWGANKIGRL 251
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 42/220 (19%)
Query: 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 137
+ + G ++ T + + + IT +
Sbjct: 18 YGITVSDKGKVWITQHKA-----------------NMISCINLDGKITEYPLPTPDAKVM 60
Query: 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 196
+ +S D V E+ + + +KG ++ + P + P I P+G W
Sbjct: 61 CLTISSD-GEVWFTENAANKIGRI----TKKGIIKEYTLPNPDSAPYGITEGPNGDIWFT 115
Query: 197 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAE--DGTIIRNLVDP 253
+++ R+ + I+ + FITLG A + E + I R +
Sbjct: 116 --EMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA--LWFTENQNNAIGR--ITE 169
Query: 254 TGQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 284
+G + F G+ + L+ + + N IG++
Sbjct: 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 35/274 (12%), Positives = 80/274 (29%), Gaps = 67/274 (24%)
Query: 37 GLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 95
G+TS+++G + + + + + G + + ++ +S G ++FT +
Sbjct: 24 GITSSEDGKVWFTQHKANKISSLDQSG--RIKEFEVPTPDAKVMCLIVSSLGDIWFTENG 81
Query: 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW 154
+ ++ K T + G+ + + +
Sbjct: 82 A-----------------NKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLN 123
Query: 155 KFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA------IIKLDARRMKI 207
R K G + + G+ P I L D W I ++
Sbjct: 124 GDRIGKLT----ADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN----- 174
Query: 208 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-----RNLV---DPTGQLMS 259
+ KL ++ L T I DG + N + TG++
Sbjct: 175 --TGKLEEYPLP----------TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISE 222
Query: 260 FVT-------SGLQVD--NHLYVISLTSNFIGKV 284
+ + + ++ +N IG++
Sbjct: 223 YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 30/202 (14%)
Query: 1 MDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNANG-LH 56
NG I+ T I +L DGT + + + +T + L +N N +
Sbjct: 111 EGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170
Query: 57 KVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 116
+++ G Y + + +DG+L+F ++
Sbjct: 171 RITNTG--KLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-----------------NKI 211
Query: 117 LKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA 175
+ + I+ + + + ++ + E + + ++ +
Sbjct: 212 GRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWGANQIGRI----TNDNTIQEYQ 266
Query: 176 ENLPGA-PDNINLAPDGTFWIA 196
A P I DG+ W A
Sbjct: 267 LQTENAEPHGITFGKDGSVWFA 288
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 39/218 (17%), Positives = 72/218 (33%), Gaps = 38/218 (17%)
Query: 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 137
+ + DG ++FT + ++ D S I V
Sbjct: 23 YGITSSEDGKVWFTQHKA-----------------NKISSLDQSGRIKEFEVPTPDAKVM 65
Query: 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 196
+ +S + E+ + K +KG + P + P I +G W
Sbjct: 66 CLIVSSL-GDIWFTENGANKIGKL----SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFT 120
Query: 197 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAEDGTIIRNLVDPTG 255
+L+ R+ L + I + FITLG A ++ +I R + TG
Sbjct: 121 --QLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR--ITNTG 176
Query: 256 QLMSFVTS-------GLQVDN--HLYVISLTSNFIGKV 284
+L + G+ N L+ + + N IG++
Sbjct: 177 KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.97 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.95 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.94 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.93 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.92 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.92 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.87 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.87 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.87 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.87 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.87 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.87 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.86 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.86 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.84 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.84 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.83 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.82 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.81 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.8 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.78 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.78 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.77 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.77 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.75 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.73 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 99.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 99.71 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.7 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.7 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.67 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.66 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.65 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.64 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.64 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.62 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.61 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.6 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.6 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.59 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.59 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.59 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.59 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.59 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.59 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.58 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.57 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.56 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.55 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.55 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.54 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.54 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.53 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.53 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.52 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.5 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.5 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.48 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.48 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.47 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.44 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.43 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.43 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.43 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.42 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.42 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.41 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.38 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.38 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.37 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.37 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.36 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.35 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.35 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.33 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.33 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.33 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.33 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.33 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.29 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.29 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.26 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.23 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.21 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.18 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.15 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.14 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.13 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.09 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.09 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.09 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.08 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.07 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.07 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.06 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.04 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.03 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.0 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.99 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.98 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.98 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.98 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.97 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.97 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.96 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 98.92 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.92 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.91 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.9 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.9 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.89 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.86 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.86 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 98.86 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.85 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.83 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.81 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.78 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.77 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.75 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.75 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.73 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.73 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.72 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.71 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.71 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.7 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.68 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.67 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.66 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.65 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.63 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.63 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.63 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.62 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.6 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.58 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.58 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.57 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.57 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.57 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.57 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.56 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.56 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.55 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.53 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.53 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.51 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.51 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.49 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.49 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.47 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.47 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.46 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.46 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.44 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.44 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.44 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.44 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.43 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.43 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.43 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.41 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.39 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.39 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.39 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.39 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.38 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.38 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.38 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.36 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.35 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.35 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.34 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.34 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.34 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.34 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.33 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.33 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.32 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.32 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.31 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.31 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.3 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.29 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.29 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.28 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.28 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.28 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.27 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.26 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.26 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.26 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.25 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.23 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.23 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.21 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.21 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.2 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.19 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.19 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.19 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.18 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.18 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.16 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.14 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.13 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.13 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.11 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.11 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.1 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.1 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.09 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.09 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.07 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.06 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.01 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.98 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.98 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.97 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 97.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.97 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.94 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.92 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.91 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.89 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.85 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.84 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.84 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.83 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 97.83 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.82 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.82 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.79 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.76 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.76 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.76 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.74 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.7 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.7 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.69 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.67 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.67 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.64 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.62 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.57 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.55 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.55 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.54 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.52 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.49 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.39 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.39 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.38 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.33 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.33 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.31 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.27 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.26 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.24 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.23 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.23 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.23 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.2 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.2 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.19 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.17 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.16 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.12 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.1 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.1 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.07 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.04 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.03 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 97.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.97 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.95 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.9 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.87 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 96.84 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.71 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.66 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.63 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 96.49 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.26 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.02 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 95.48 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.46 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 95.39 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 95.28 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 94.29 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 94.16 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.13 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 93.6 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.18 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 92.25 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.01 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.72 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.27 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 89.84 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 89.44 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 88.82 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 88.42 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 88.25 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 87.32 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 86.29 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 85.92 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 84.56 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 83.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 83.58 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 83.38 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 82.09 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 81.25 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 80.94 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 80.71 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 80.62 |
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=213.14 Aligned_cols=260 Identities=25% Similarity=0.389 Sum_probs=195.9
Q ss_pred CCCCCc-EEEEecCCeEEEEE-C-CceEEEEee--------------------CCccccCeEECC-CCcEEEEeCCCceE
Q 023085 1 MDKNGV-IYTATRDGWIKRLQ-D-GTWVNWKFI--------------------DSQTLVGLTSTK-EGHLIICDNANGLH 56 (287)
Q Consensus 1 ~d~~G~-l~~~~~~g~i~~~~-~-~~~~~~~~~--------------------~~~~~~~i~~d~-dg~l~v~~~~~gi~ 56 (287)
+|++|+ +|+++.+++|++++ + +.+..+... ...|. ++++++ +|+|||++..++++
T Consensus 26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~l~v~d~~~~i~ 104 (322)
T 2fp8_A 26 FDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQLYIVDCYYHLS 104 (322)
T ss_dssp CCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTEEEEEETTTEEE
T ss_pred EcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCcEEEEECCCCEE
Confidence 467887 88888899999999 4 456665431 13577 899997 89999998888899
Q ss_pred EEcc-CC-cEEEeeecCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc
Q 023085 57 KVSE-DG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF 133 (287)
Q Consensus 57 ~~~~-~g-~~~~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (287)
+++. ++ ++.+.....+.++..|+++++++ +|++|+++....++...+..........+.|++++++++++..+...+
T Consensus 105 ~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~ 184 (322)
T 2fp8_A 105 VVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL 184 (322)
T ss_dssp EECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE
T ss_pred EEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC
Confidence 9994 46 66665444444566899999999 999999986533322221111111233478999999888877766667
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchh
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL 213 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 213 (287)
..|++++++++++.||++++..++|++|++++......+.+.. .++ |+++++|++|+||+++...+...
T Consensus 185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~--------- 253 (322)
T 2fp8_A 185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGN--------- 253 (322)
T ss_dssp SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSS---------
T ss_pred ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCccccc---------
Confidence 8899999999999999999988999999987644445555543 456 99999999999999997521100
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeCC
Q 023085 214 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
| .....+.|++++++|+.+..+..++|..++.++.++..+++|||++..+++|.+|++.
T Consensus 254 --------~-------~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 254 --------M-------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp --------T-------TSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred --------c-------cCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 0 0112468999999999999999887766777888888899999999999999999873
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-25 Score=185.52 Aligned_cols=238 Identities=17% Similarity=0.240 Sum_probs=177.9
Q ss_pred CCCCc--EEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCcccc
Q 023085 2 DKNGV--IYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 2 d~~G~--l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~~ 76 (287)
+++|. +|++..+++|++++ +++...+......+. +++++++|+||+++.. .+|.+++.+| .+.+.....+....
T Consensus 53 ~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~ 131 (305)
T 3dr2_A 53 WEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLN 131 (305)
T ss_dssp EGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECS
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccC
Confidence 45675 45555789999999 777777777777788 9999999999999866 5799999668 77776554555567
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcc-eee-eeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHE-YCL-DILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
.|++++++++|++|++|.. ++... +.. ........+.|++++++++++..+. ....|++++++||++.||++++.
T Consensus 132 ~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~ 208 (305)
T 3dr2_A 132 SPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTP 208 (305)
T ss_dssp CCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECC
T ss_pred CCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecC
Confidence 8999999999999998753 11100 000 0000112468999999878877776 77789999999999999999986
Q ss_pred C-----CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 155 K-----FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 155 ~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
. ++|++|+++...+...+.+.....+.|+++++|++|+||+++..
T Consensus 209 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~------------------------------ 258 (305)
T 3dr2_A 209 EQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT------------------------------ 258 (305)
T ss_dssp C---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS------------------------------
T ss_pred CcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC------------------------------
Confidence 3 78999998754333344444334567999999999999999854
Q ss_pred cCCCceEEEEECCCCcEEEEEECCCCccccceEEEEE--eCCEEEEEecCCCeEEEEeC
Q 023085 230 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 230 ~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~ 286 (287)
+|.+++++|+.+..+..+.+ ++.++. ++++|||++. +.|.++++
T Consensus 259 ------gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~--~~l~~~~~ 304 (305)
T 3dr2_A 259 ------GVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGG--PCLWMLPL 304 (305)
T ss_dssp ------EEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred ------cEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence 79999999999999887652 444444 3578999986 47888775
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-25 Score=188.66 Aligned_cols=257 Identities=18% Similarity=0.285 Sum_probs=184.1
Q ss_pred CCCCcEEEEe-------------cCCeEEEEE-C---CceEEEEeeC-------CccccCeEECC--CC--cEEEEeCCC
Q 023085 2 DKNGVIYTAT-------------RDGWIKRLQ-D---GTWVNWKFID-------SQTLVGLTSTK--EG--HLIICDNAN 53 (287)
Q Consensus 2 d~~G~l~~~~-------------~~g~i~~~~-~---~~~~~~~~~~-------~~~~~~i~~d~--dg--~l~v~~~~~ 53 (287)
+++|.+|+++ ..|.|++++ + ++.+.+.... ..|. ||.+.+ +| +|||+++..
T Consensus 58 ~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi~~~~d~dg~~~L~Vvnh~~ 136 (355)
T 3sre_A 58 LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFIDDDNTVYLLVVNHPG 136 (355)
T ss_dssp CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EEEEEECTTCCEEEEEEECST
T ss_pred cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-eeEEEECCCCcEEEEEEECCC
Confidence 5689999997 689999999 3 3444444332 3677 888754 56 599998764
Q ss_pred c-----eEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcce-eeeeeccCCCceEEEEeCCCCee
Q 023085 54 G-----LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY-CLDILEGKPHGQLLKYDPSSNIT 126 (287)
Q Consensus 54 g-----i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 126 (287)
+ +++++.++ ...+.....+.++..||+++++++|++|+++... +....+ ..+...+...+.|+++++. ++
T Consensus 137 ~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~~~~~~g~vyr~d~~--~~ 213 (355)
T 3sre_A 137 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLAWSFVTYYSPN--DV 213 (355)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHHHTTCCCEEEEEECTT--CC
T ss_pred CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchhhccCCccEEEEEECC--eE
Confidence 3 88888655 5555555566778899999999999999987542 100000 0011112345789999984 66
Q ss_pred EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC-CCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhH
Q 023085 127 TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARR 204 (287)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~ 204 (287)
+.+...+..|||++++||++.||++++..++|++|+++. +++...+.+ ..++.|+|+++|+ +|+||+++.....++
T Consensus 214 ~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 214 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEESCHHHH
T ss_pred EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecCCceEE
Confidence 667778899999999999999999999999999999863 344444555 3467899999999 599999886533333
Q ss_pred HHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC----CCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCe
Q 023085 205 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA----EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 280 (287)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~ 280 (287)
+.+ .|+. .....|.|+. .+++..+.|.. +|..++..+.+.+.+++||||+...+
T Consensus 292 ~~~-------------~P~~-------~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T~a~~~~g~L~iGsv~~~- 349 (355)
T 3sre_A 292 FFY-------------DAEN-------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHK- 349 (355)
T ss_dssp HSC-------------CTTS-------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEEEEEEETTEEEEEESSSC-
T ss_pred EEE-------------CCCC-------CCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeEEEEEECCEEEEEEcCCC-
Confidence 322 1221 1235677776 46777888886 78888888988889999999999888
Q ss_pred EEEEeC
Q 023085 281 IGKVQL 286 (287)
Q Consensus 281 i~~~~~ 286 (287)
+..|+|
T Consensus 350 ~l~c~~ 355 (355)
T 3sre_A 350 ALYCDL 355 (355)
T ss_dssp EEEEEC
T ss_pred ceeccC
Confidence 777775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-23 Score=173.48 Aligned_cols=237 Identities=20% Similarity=0.261 Sum_probs=172.2
Q ss_pred CCCCc--EEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccc
Q 023085 2 DKNGV--IYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~--l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~ 75 (287)
|++|. +|+++.+++|++++ ++....+......|. +++++++|+||+++.. .+|.+++ .+| .+.+.....+.+.
T Consensus 36 d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 114 (296)
T 3e5z_A 36 VPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKL 114 (296)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEEC
T ss_pred eCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCC
Confidence 56776 55666889999999 444666666666677 9999999999999865 6799999 588 7666544344445
Q ss_pred cccceEEEcCCCcEEEEcCCC-CCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSS-KYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..|++++++++|++|+++... .......... ......+.|++++++ +++..+......|++++++|+++.+ ++++.
T Consensus 115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~ 191 (296)
T 3e5z_A 115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG-EMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTG 191 (296)
T ss_dssp CCCCCEEECTTSCEEEEECSHHHHCGGGSSCC-CCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETT
T ss_pred CCCCCEEECCCCCEEEECCccccccccccccc-cccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCC
Confidence 678999999999999986520 0000000000 001124589999988 7777777777889999999999977 99888
Q ss_pred CCEEEEEEec-CCCC-cceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 155 KFRCRKYWLK-GERK-GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 155 ~~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
.++|++|+++ .+++ .....+ ....+.|+++++|++|+||+++ .
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~--------------------------------- 236 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-G--------------------------------- 236 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-T---------------------------------
T ss_pred CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-C---------------------------------
Confidence 8999999986 3333 333444 3345679999999999999999 4
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEE---eCCEEEEEecCCCeEEEEeC
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ---VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~l~i~~~~~~~i~~~~~ 286 (287)
++|.+++++|+.+..+..+.+ ++.+++ +++.||+++. +.|.++++
T Consensus 237 --~~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~ 284 (296)
T 3e5z_A 237 --DGVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIET 284 (296)
T ss_dssp --TEEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEEC
T ss_pred --CeEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEc
Confidence 389999999999988886553 444444 2368999985 47888775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-22 Score=169.27 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=166.2
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCcccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFA 78 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~ 78 (287)
++.||+.+ .+++|++++ +++...+ .....+. +++++++|+||+++ ..+|++++ .++ ++.+.....+.+...+
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 100 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVS-SVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRF 100 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEE-EEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceE-EEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCC
Confidence 56777776 678999999 4555443 3345566 89999999999998 56999999 667 7766554333445678
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEE
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l 158 (287)
++++++++|++|+++........ ......+.|++++++ +++..+......|++++++|+++.||++++..++|
T Consensus 101 ~di~~d~dG~l~~~~~~~~~~~~------~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i 173 (297)
T 3g4e_A 101 NDGKVDPAGRYFAGTMAEETAPA------VLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSV 173 (297)
T ss_dssp EEEEECTTSCEEEEEEECCSBTT------BCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred CCEEECCCCCEEEecCCcccccc------cccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcE
Confidence 99999999999997533110000 001234689999986 66666666677899999999999999999988999
Q ss_pred EEEEec--CCCCcceeEEec--cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 023085 159 RKYWLK--GERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234 (287)
Q Consensus 159 ~~~~~~--~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (287)
++|+++ ++.....+.+.. ...+.|+++++|++|+||+++.. .
T Consensus 174 ~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----------------------------------~ 219 (297)
T 3g4e_A 174 DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----------------------------------G 219 (297)
T ss_dssp EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----------------------------------T
T ss_pred EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----------------------------------C
Confidence 999974 333333344432 12357999999999999999986 3
Q ss_pred eEEEEECCC-CcEEEEEECCCCccccceEEEEEe---CCEEEEEecCC
Q 023085 235 AHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV---DNHLYVISLTS 278 (287)
Q Consensus 235 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~---~g~l~i~~~~~ 278 (287)
+.|.+++++ |+.+..+..+.. .++++++. .++|||++...
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBCT
T ss_pred CEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCCc
Confidence 579999998 888888887642 46777774 37899999753
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=170.37 Aligned_cols=245 Identities=20% Similarity=0.277 Sum_probs=174.1
Q ss_pred CCCCCcEEEE--------ecCCeEEEEE--CCceEEEEe-----eCCccccCeEECCC-CcEEEEeCCCceEEEccCC-c
Q 023085 1 MDKNGVIYTA--------TRDGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKE-GHLIICDNANGLHKVSEDG-V 63 (287)
Q Consensus 1 ~d~~G~l~~~--------~~~g~i~~~~--~~~~~~~~~-----~~~~~~~~i~~d~d-g~l~v~~~~~gi~~~~~~g-~ 63 (287)
+|++|.||++ +.+++|++++ ++++..+.. ....+. +++++++ |+||+++...+|++++.+| .
T Consensus 25 ~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v~~~~~~l~~~d~~g~~ 103 (314)
T 1pjx_A 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFVADMRLGLLVVQTDGTF 103 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEEEETTTEEEEEETTSCE
T ss_pred ECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEEEECCCCEEEEeCCCCE
Confidence 3678999998 5788999999 677766544 234567 8999999 9999998767899999448 6
Q ss_pred EEE-eeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEc
Q 023085 64 ENF-LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS 142 (287)
Q Consensus 64 ~~~-~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (287)
..+ .......+...|++++++++|++|+++.........+.. ......+.|++++++ +++..+......+++++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR--SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVR 180 (314)
T ss_dssp EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB--TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEE
T ss_pred EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc--cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEe
Confidence 554 332223334578999999999999986431000000000 001123689999987 7766655556678999999
Q ss_pred ----cCCCEEEEEeCCCCEEEEEEec-CCCCcceeEEecc--CC-CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhH
Q 023085 143 ----RDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAEN--LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI 214 (287)
Q Consensus 143 ----~~~~~l~v~~~~~~~l~~~~~~-~~~~~~~~~~~~~--~~-~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~ 214 (287)
++++.+|+++...++|++|+.+ ..+......+... .. +.|.++++|++|+||+++..
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~--------------- 245 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG--------------- 245 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET---------------
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC---------------
Confidence 9998899999888999999976 2222222233211 11 46899999999999999875
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCE-EEEEecCCCeEEEEeCC
Q 023085 215 KHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTSNFIGKVQLS 287 (287)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~-l~i~~~~~~~i~~~~~~ 287 (287)
.++|.+++++ ++.+..+..+. ..+.+++++ +++ ||+++...+.|.+|+++
T Consensus 246 -------------------~~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 246 -------------------SSHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp -------------------TTEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred -------------------CCEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 2589999998 77777776542 356777775 555 99999988999999863
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-20 Score=153.14 Aligned_cols=224 Identities=17% Similarity=0.215 Sum_probs=158.8
Q ss_pred CCCCCcEEE-Ee-cCCeEEEEE-CC-ceEEEEee-CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCc
Q 023085 1 MDKNGVIYT-AT-RDGWIKRLQ-DG-TWVNWKFI-DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGS 73 (287)
Q Consensus 1 ~d~~G~l~~-~~-~~g~i~~~~-~~-~~~~~~~~-~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~ 73 (287)
+|++|.||+ +. .+++|.+++ .+ ....+... ...|. +++++++|+||+++..++|++++.++ ...+.. .
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~----~ 105 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF----D 105 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEECCC----C
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec----C
Confidence 367899999 74 678999998 32 22222222 24577 99999999999998756799999555 433211 1
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
....|.+++++++|++|+++.. .+.|++++..+...... ......|++++++++++ +|+++
T Consensus 106 ~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~ 167 (270)
T 1rwi_B 106 GLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD 167 (270)
T ss_dssp SCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEE
T ss_pred CcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEE
Confidence 2357889999999999997522 45799997654433322 23345789999999997 99999
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
...++|.+++.++... ..........|.++++|++|+||+++..
T Consensus 168 ~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~~g~l~v~~~~--------------------------------- 211 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGTVYVTEHN--------------------------------- 211 (270)
T ss_dssp GGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCCEEEEETT---------------------------------
T ss_pred CCCCEEEEEecCCCce---EeecccCCCCceEEEECCCCCEEEEECC---------------------------------
Confidence 8788999999754321 1111111146899999999999999975
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeCC
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|.++++++.....+.. .+ ...+.+++++ +|+||+++..+++|.++++.
T Consensus 212 -~~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 212 -TNQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp -TSCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred -CCcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 3579999998876554332 22 3567888886 68999999999999999864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=155.14 Aligned_cols=238 Identities=19% Similarity=0.251 Sum_probs=166.4
Q ss_pred CCCCCcEEEE-ecCCeEEEEE--CCceEEEE-eeCCccccCeEECCCCcEEEEeCCC-----ceEEEc-cCC-cEEEeee
Q 023085 1 MDKNGVIYTA-TRDGWIKRLQ--DGTWVNWK-FIDSQTLVGLTSTKEGHLIICDNAN-----GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 1 ~d~~G~l~~~-~~~g~i~~~~--~~~~~~~~-~~~~~~~~~i~~d~dg~l~v~~~~~-----gi~~~~-~~g-~~~~~~~ 69 (287)
+|++|.||++ +.+++|++++ +++...+. .....+. +++++++|++|+++... +|++++ .++ .+.+...
T Consensus 52 ~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 130 (333)
T 2dg1_A 52 FDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 130 (333)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence 3678999975 4778999999 56666554 3345566 99999999999998654 799999 555 5533221
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEE
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 149 (287)
. .....|++++++++|++|+++.... .....+.|++++++++++..+......+++++++|+++.||
T Consensus 131 ~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 131 L--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp S--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred C--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEE
Confidence 1 1234688999999999999754210 00124679999988667666555556789999999999999
Q ss_pred EEeCCCCEEEEEEecC-CC-Ccce--eEEecc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 150 VCESWKFRCRKYWLKG-ER-KGKL--ETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~-~~-~~~~--~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
+++...++|++|+.+. .. .... ..+... ....|+++++|++|++|+++..
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~------------------------- 252 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------------------------- 252 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-------------------------
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-------------------------
Confidence 9988778999999853 11 1111 111111 1136899999999999999975
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEECCCCc--cccceEEEEEe-C-CEEEEEecCC-----CeEEEEeC
Q 023085 225 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ--LMSFVTSGLQV-D-NHLYVISLTS-----NFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~-~-g~l~i~~~~~-----~~i~~~~~ 286 (287)
.++|.+++++++.+..+..+... .+..+..++.. + ++||+++..+ ..|.++++
T Consensus 253 ---------~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 253 ---------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp ---------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ---------CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 25899999999888888754320 11235555553 3 6999999874 47777765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-19 Score=151.38 Aligned_cols=217 Identities=20% Similarity=0.240 Sum_probs=157.4
Q ss_pred CCCCCcEEEEe-cCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC-Cc--eEEEc-cCC-cEEEeeecCCc
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NG--LHKVS-EDG-VENFLSYVNGS 73 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~g--i~~~~-~~g-~~~~~~~~~~~ 73 (287)
+|++|+||+++ .+++|++++ +++...+......|. +++++++|+||+++.. ++ |++++ ++| ++.+....
T Consensus 39 ~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~--- 114 (306)
T 2p4o_A 39 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--- 114 (306)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT---
T ss_pred ECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC---
Confidence 36789999998 678999999 776666555666788 9999999999999854 23 88888 778 76654431
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-----------eccccccceEEEc
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-----------ADGFYFANGVALS 142 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~i~~~ 142 (287)
....+++++...++.+|+++.. .+.||++|+.+++.... ...+..|+++ +
T Consensus 115 ~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 115 DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred CccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 1245677777777788887532 56899999875432211 1234568887 7
Q ss_pred cCCCEEEEEeCCCCEEEEEEecC-CCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhC
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY 221 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (287)
++++.||++++..++|++|+.+. .++...+.+.. . ..|+++++|++|+||++...
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-~~P~gi~vd~dG~l~va~~~---------------------- 231 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-TNIDDFAFDVEGNLYGATHI---------------------- 231 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-CCCSSEEEBTTCCEEEECBT----------------------
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-CCCCCeEECCCCCEEEEeCC----------------------
Confidence 88999999999999999999874 33333444432 2 46999999999999999986
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-----CCEEEEEecCC
Q 023085 222 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-----DNHLYVISLTS 278 (287)
Q Consensus 222 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~i~~~~~ 278 (287)
.+.|.+++++|+.......+.+ ...++++++. .++|||++..+
T Consensus 232 ------------~~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 232 ------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ------------CCeEEEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence 3589999999876543222222 3567888774 37999998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-19 Score=148.18 Aligned_cols=221 Identities=17% Similarity=0.251 Sum_probs=163.6
Q ss_pred CCCCcEEEEe-cCCeEEEEE-CCceEEEEeeC--CccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCccc
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~--~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~ 75 (287)
|++|.||+++ .+++|.+++ ++++..+..+. ..|. +++++++|++|+++.. ++|++++.++ ...+... ...
T Consensus 28 d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~---~~~ 103 (300)
T 2qc5_A 28 SEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLP---QPD 103 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEEECS---STT
T ss_pred CCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeEEecCC---CCC
Confidence 6789999998 468999999 76666554332 4566 8999999999999864 5699999558 6544221 112
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..|.+++++++|.+|+++.. .+.|++++++ +++..+. .....|.+++++++++ +|+++.
T Consensus 104 ~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 164 (300)
T 2qc5_A 104 SGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTEN 164 (300)
T ss_dssp CCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEET
T ss_pred CCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEec
Confidence 57889999999999997532 4689999988 7665442 2356789999999998 999998
Q ss_pred CCCEEEEEEecCCCCcceeEEec-cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
..+.|++++.++ + ...+.. .....|.++++|++|+||+++..
T Consensus 165 ~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--------------------------------- 207 (300)
T 2qc5_A 165 QNNSIGRITNTG-K---LEEYPLPTNAAAPVGITSGNDGALWFVEIM--------------------------------- 207 (300)
T ss_dssp TTTEEEEECTTC-C---EEEEECSSTTCCEEEEEECTTSSEEEEETT---------------------------------
T ss_pred CCCeEEEECCCC-c---EEEeeCCCCCCCcceEEECCCCCEEEEccC---------------------------------
Confidence 788999998632 2 222221 12236889999999999999975
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++++++... +..+.+ ...+.+++.+ +|+||+++...+.|.+++.
T Consensus 208 -~~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 208 -GNKIGRITTTGEISE-YDIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp -TTEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred -CCEEEEEcCCCcEEE-EECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 358999999776554 333322 3567888887 6899999998899999875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=160.60 Aligned_cols=229 Identities=12% Similarity=0.093 Sum_probs=166.3
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-----CceEEEccCC-cEEEeeecCCccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHKVSEDG-VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-----~gi~~~~~~g-~~~~~~~~~~~~~ 75 (287)
+|+||+++..++|.+++ ++....+......|. +++++++|+||+++.. .+++.++..+ ...-... ..+
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~---~~~ 227 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL---CNA 227 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE---EEC
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc---ccc
Confidence 58999998668999999 677766655556688 9999999999999863 3577777444 3210011 124
Q ss_pred cccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeec--cccccceEEEccCCCEEEEE
Q 023085 76 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVAD--GFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 76 ~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~--~~~~~~~i~~~~~~~~l~v~ 151 (287)
..|+++++++ +|.||+++.. .+.|++++++++.+ ..+.. ....+.+++++|+++.||++
T Consensus 228 ~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred CCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 6889999999 8999997533 56899999987766 33321 22345679999999999999
Q ss_pred eCCCCEEEEEEecC--CCCcceeEEecc--------------CCCCCcceee---------CCCCCEEEEEeccchhHHH
Q 023085 152 ESWKFRCRKYWLKG--ERKGKLETFAEN--------------LPGAPDNINL---------APDGTFWIAIIKLDARRMK 206 (287)
Q Consensus 152 ~~~~~~l~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~i~~---------d~~G~lwv~~~~~~~~~~~ 206 (287)
+...++|++++.+. ..+.....+... ....|.++++ |++|+||++...
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~------- 363 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD------- 363 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-------
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-------
Confidence 99999999999763 222222222211 1135888999 999999999976
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECC--------CC-----ccccceEEEEEe--CCEE
Q 023085 207 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----QLMSFVTSGLQV--DNHL 271 (287)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--------~~-----~~~~~~~~~~~~--~g~l 271 (287)
.+.|.+++++|......... +| ..++.+.+++.+ +|+|
T Consensus 364 ---------------------------n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l 416 (433)
T 4hw6_A 364 ---------------------------SHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCF 416 (433)
T ss_dssp ---------------------------TTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred ---------------------------CCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEE
Confidence 35899999998665554321 11 135678999998 6999
Q ss_pred EEEecCCCeEEEEeCC
Q 023085 272 YVISLTSNFIGKVQLS 287 (287)
Q Consensus 272 ~i~~~~~~~i~~~~~~ 287 (287)
||+...+++|.++++.
T Consensus 417 yVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 417 YIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCEEEEEecC
Confidence 9999999999999863
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-19 Score=146.97 Aligned_cols=222 Identities=15% Similarity=0.254 Sum_probs=162.8
Q ss_pred CCCCCcEEEEec-CCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCcc
Q 023085 1 MDKNGVIYTATR-DGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSK 74 (287)
Q Consensus 1 ~d~~G~l~~~~~-~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~ 74 (287)
+|++|.||+++. +++|.+++ ++++..+..+ ...|. +++++++|++|+++.. .+|++++.++ .+.+... ..
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~---~~ 97 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIKEYTLP---NP 97 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEEECS---ST
T ss_pred ECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCC---Cc
Confidence 378899999986 68899999 7666655432 34567 8999999999999864 5699999667 6554311 12
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--cccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~l~v~~ 152 (287)
...|.+++++++|.+|+++.. .+.|+++++ ++++..+.. ....+++++++++++ +|+++
T Consensus 98 ~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~ 158 (299)
T 2z2n_A 98 DSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTE 158 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEE
T ss_pred CCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEe
Confidence 357889999999999997422 468999998 466655432 345688999999986 89998
Q ss_pred CCCCEEEEEEecCCCCcceeEE-eccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 153 SWKFRCRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
...+.|++++. ..+ ...+ .......|.++++|++|+||+++..
T Consensus 159 ~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------------------------------- 202 (299)
T 2z2n_A 159 NQNNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEII-------------------------------- 202 (299)
T ss_dssp TTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETT--------------------------------
T ss_pred CCCCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccC--------------------------------
Confidence 87789999986 322 2222 1112235889999999999999965
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.++|.+++++++.. .+..+.. ...+.+++.+ +|+||+++...+.|.+++.
T Consensus 203 --~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 203 --GNKIGRITTSGEIT-EFKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --TTEEEEECTTCCEE-EEECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --CceEEEECCCCcEE-EEECCCC--CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 25899999966543 4544322 3567888886 6899999988899999875
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-19 Score=148.29 Aligned_cols=219 Identities=16% Similarity=0.214 Sum_probs=160.6
Q ss_pred CCCCcEEEEec-CCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCccc
Q 023085 2 DKNGVIYTATR-DGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~l~~~~~-~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~ 75 (287)
|++|.||+++. +++|.+++ +++...+..+ ...|. +++++++|++|+++.. .+|++++.++ ...+... ...
T Consensus 70 ~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~---~~~ 145 (300)
T 2qc5_A 70 SSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY-GITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLP---NKG 145 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEECTTSCEEEEECS---STT
T ss_pred CCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCc-cceECCCCCEEEEccCCCeEEEECCCCCEEEccCC---CCC
Confidence 67899999985 67899999 7666555433 24567 8999999999999864 5799999557 5544211 123
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..|.+++++++|++|+++.. .+.|+++++ ++++..+. .....|.+++++++++ +|+++.
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 206 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQ-----------------NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEI 206 (300)
T ss_dssp CCEEEEEECTTSSEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEET
T ss_pred CCceeEEECCCCCEEEEecC-----------------CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEcc
Confidence 57899999999999997532 467999998 46665543 2345788999999886 999998
Q ss_pred CCCEEEEEEecCCCCcceeEEe-ccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
..++|.+++.++ . ...+. ......|.++++|++|+||+++..
T Consensus 207 ~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--------------------------------- 249 (300)
T 2qc5_A 207 MGNKIGRITTTG-E---ISEYDIPTPNARPHAITAGKNSEIWFTEWG--------------------------------- 249 (300)
T ss_dssp TTTEEEEECTTC-C---EEEEECSSTTCCEEEEEECSTTCEEEEETT---------------------------------
T ss_pred CCCEEEEEcCCC-c---EEEEECCCCCCCceEEEECCCCCEEEeccC---------------------------------
Confidence 888999998632 2 22221 112245889999999999999965
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.++|.++++++... .+..+.+ ...+.++..+ +|+||+++. + .|.+|+.
T Consensus 250 -~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 -ANQIGRITNDNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp -TTEEEEECTTSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred -CCeEEEECCCCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 25899999977554 4544432 3457788886 799999998 6 9999875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-19 Score=146.78 Aligned_cols=224 Identities=14% Similarity=0.232 Sum_probs=161.5
Q ss_pred CCCCCcEEEEe-cCCeEEEEE-CCceEE-EEee------CCccccCeEE-CCCCcEEEEeC--CCceEEEccCC--cEEE
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ-DGTWVN-WKFI------DSQTLVGLTS-TKEGHLIICDN--ANGLHKVSEDG--VENF 66 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~-~~~~~~-~~~~------~~~~~~~i~~-d~dg~l~v~~~--~~gi~~~~~~g--~~~~ 66 (287)
++++|.||+++ .+++|.+|+ +++... +... ...|. ++++ +++|+||+++. ...|.+++.+| ...+
T Consensus 37 ~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~ 115 (286)
T 1q7f_A 37 VNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF 115 (286)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEe
Confidence 36789999996 678999999 655433 2221 13566 8899 68999999985 46799998666 3333
Q ss_pred eeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccC
Q 023085 67 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD 144 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 144 (287)
. ......|.+++++++|++|+++.. .+.|++++++...+..+. .....|++++++++
T Consensus 116 ~----~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 116 G----ATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK 174 (286)
T ss_dssp C----TTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS
T ss_pred c----CccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC
Confidence 1 122357899999999999997533 467999997644444443 33567899999999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCc
Q 023085 145 EDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 223 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (287)
++ +|+++...++|.+|+.++. ....+... ....|.++++|++|+||++...
T Consensus 175 g~-l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------------------------ 226 (286)
T 1q7f_A 175 QE-IFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNH------------------------ 226 (286)
T ss_dssp SE-EEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECS------------------------
T ss_pred CC-EEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCC------------------------
Confidence 86 9999988889999996542 12222211 1246899999999999999976
Q ss_pred cccccccCCCce-EEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeCC
Q 023085 224 LFSQFITLGGGA-HLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 224 ~~~~~~~~~~~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+ .|.+++++++.+..+..... ...+.++..+ +|+||+++. .++|.++++.
T Consensus 227 ----------~~~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~~ 279 (286)
T 1q7f_A 227 ----------NNFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRYV 279 (286)
T ss_dssp ----------SSCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEECS
T ss_pred ----------CCEEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEcc
Confidence 23 89999999998888865322 2346677776 799999974 6899988863
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-19 Score=147.11 Aligned_cols=220 Identities=15% Similarity=0.206 Sum_probs=160.3
Q ss_pred CCCCcEEEEec-CCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCccc
Q 023085 2 DKNGVIYTATR-DGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~l~~~~~-~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~ 75 (287)
|++|.+|+++. +++|++++ ++++..+..+ ...|. +++++++|+||+++.. .+|++++.++ ...+... ...
T Consensus 65 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~---~~~ 140 (299)
T 2z2n_A 65 SSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIREYELP---NKG 140 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEEECS---STT
T ss_pred CCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEEEecCC---CCC
Confidence 67899999985 68899999 7676655532 34567 8999999999999754 5799998766 5544221 123
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..|++++++++|++|+++. ..+.|+++++ ++++..+. .....|.+++++++++ +|+++.
T Consensus 141 ~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~ 201 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTEN-----------------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEI 201 (299)
T ss_dssp CCEEEEEECTTSCEEEEET-----------------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEET
T ss_pred CCCceEEEcCCCCEEEEeC-----------------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEcc
Confidence 4688999999999999742 2468999998 57766542 2345688999999987 899998
Q ss_pred CCCEEEEEEecCCCCcceeEEe-ccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
..++|.+++. ..+ ...+. ......|.++++|++|+||+++..
T Consensus 202 ~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--------------------------------- 244 (299)
T 2z2n_A 202 IGNKIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWG--------------------------------- 244 (299)
T ss_dssp TTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETT---------------------------------
T ss_pred CCceEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccC---------------------------------
Confidence 7889999987 322 22221 112246889999999999999865
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.++|.++++++. +..+..+.+ ...+.++...+++||+++. ++.|.+++.
T Consensus 245 -~~~i~~~d~~g~-~~~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 245 -ANKIGRLTSNNI-IEEYPIQIK--SAEPHGICFDGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp -TTEEEEEETTTE-EEEEECSSS--SCCEEEEEECSSCEEEEET-TTEEEEEEE
T ss_pred -CceEEEECCCCc-eEEEeCCCC--CCccceEEecCCCEEEEec-CCcEEEEEc
Confidence 258999998764 455554432 2346666667799999986 678888874
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-19 Score=149.79 Aligned_cols=221 Identities=17% Similarity=0.175 Sum_probs=159.0
Q ss_pred CcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 5 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 5 G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
+.+|+.+ .+++|++++ +++...+. .+..+. +++++++|++|+++ ..+|++++ .+| ++.+.....+.+...++
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~-~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~ 137 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVHA-LPFMGS-ALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSN 137 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEE-EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEE-CCCcce-EEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCC
Confidence 5666555 678999999 45554443 234455 88999999999998 56899999 677 66654322222335688
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 159 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~ 159 (287)
+++++++|++|+++.... .....+.|++++ . +++..+......+++++++++++.+|++++..++|+
T Consensus 138 ~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 138 DGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp EEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 999999999999753200 011246899999 4 777666555567899999999999999998888999
Q ss_pred EEEec--CC-CCcceeEEec--cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 023085 160 KYWLK--GE-RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234 (287)
Q Consensus 160 ~~~~~--~~-~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (287)
+|+.+ ++ .+...+.+.. ...+.|+++++|++|+||+++.. .
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----------------------------------~ 250 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----------------------------------E 250 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----------------------------------T
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----------------------------------C
Confidence 99985 33 3333333322 13356899999999999999975 2
Q ss_pred eEEEEECCCCcEEEEEECCCCccccceEEEEEe---CCEEEEEecCCC
Q 023085 235 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV---DNHLYVISLTSN 279 (287)
Q Consensus 235 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~g~l~i~~~~~~ 279 (287)
++|.+++++++.+..+..+. ..++++++. .+.|||++..++
T Consensus 251 ~~v~~~d~~g~~~~~i~~~~----~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 251 GAVDRYDTDGNHIARYEVPG----KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp TEEEEECTTCCEEEEEECSC----SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred CEEEEECCCCCEEEEEECCC----CCcEEEEEecCCCCEEEEEecCCC
Confidence 58999999998888887653 246777764 368999988763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-18 Score=153.65 Aligned_cols=229 Identities=12% Similarity=0.100 Sum_probs=165.2
Q ss_pred CCcEEEEecCCeEEEEE-C-CceEEEEeeCCccccCeEECCCCc-EEEEeCCC-----ceEEEccCC-cEEEeeecCCcc
Q 023085 4 NGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-----GLHKVSEDG-VENFLSYVNGSK 74 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~-----gi~~~~~~g-~~~~~~~~~~~~ 74 (287)
+|.||+++..++|.+++ + +....+......|. +++++++|+ ||+++... .++.+++++ +...... ..
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l---~~ 224 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITEL---TK 224 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEE---EE
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeee---cc
Confidence 58999998768999999 4 45556655556788 999999997 99998632 466666555 3311111 02
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEE
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~ 151 (287)
+..|+++++++ +|.||+++.. .+.|++++++++....+. .....|++++++|+++.||++
T Consensus 225 ~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 225 GQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp CSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred CCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 46789999999 8999998643 568999999866653332 233579999999999999999
Q ss_pred eCCCCEEEEEEecCC--CCcceeEEecc--------------CCCCCc-ceee--------CCCCCEEEEEeccchhHHH
Q 023085 152 ESWKFRCRKYWLKGE--RKGKLETFAEN--------------LPGAPD-NINL--------APDGTFWIAIIKLDARRMK 206 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~--~~~~~~~~~~~--------------~~~~~~-~i~~--------d~~G~lwv~~~~~~~~~~~ 206 (287)
+...++|++++.++. .+.....+... ....|. ++++ |++|+||++...
T Consensus 288 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~------- 360 (430)
T 3tc9_A 288 VVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE------- 360 (430)
T ss_dssp ETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG-------
T ss_pred ECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC-------
Confidence 999999999998742 12112222211 112466 7887 567999999987
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECC--------CC-----ccccceEEEEEe--CCEE
Q 023085 207 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----QLMSFVTSGLQV--DNHL 271 (287)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--------~~-----~~~~~~~~~~~~--~g~l 271 (287)
...|.+++++|......... +| ..++.+.+++.+ +++|
T Consensus 361 ---------------------------n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l 413 (430)
T 3tc9_A 361 ---------------------------NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECF 413 (430)
T ss_dssp ---------------------------GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred ---------------------------CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEE
Confidence 35899999999766665431 12 135678999997 4999
Q ss_pred EEEecCCCeEEEEeCC
Q 023085 272 YVISLTSNFIGKVQLS 287 (287)
Q Consensus 272 ~i~~~~~~~i~~~~~~ 287 (287)
||+...+++|.+++++
T Consensus 414 yVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 414 FIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEECCCCeEEEEccC
Confidence 9999999999999864
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-19 Score=168.05 Aligned_cols=223 Identities=14% Similarity=0.189 Sum_probs=161.0
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeC---------CccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEe
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFID---------SQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFL 67 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~---------~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~ 67 (287)
|++|.||+||.+++|.+++ ++.+..+.... .... +++.|++|+ ||+++...||++++ .++ ++.+.
T Consensus 365 d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 365 DKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN 443 (795)
T ss_dssp CTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence 6789999999998999999 56676664221 2234 788899999 99999878999999 566 66664
Q ss_pred eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-----c--cccceEE
Q 023085 68 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----F--YFANGVA 140 (287)
Q Consensus 68 ~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~--~~~~~i~ 140 (287)
......+...+.+++.|++|+||++ +. ++|++++++++++..+... + .....+.
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwig------------------t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLG------------------TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEE------------------ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEE------------------ec-CceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence 3222233356788999999999995 22 5799999988887765432 1 2345677
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCCCCcceeEE-e-cc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHH
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF-A-EN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 217 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~-~-~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 217 (287)
.+++|+ +|++.. ++|++++.++.+. ..... . .. .......++.|++|+||+++..
T Consensus 505 ~d~~g~-lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~------------------ 562 (795)
T 4a2l_A 505 RDSHKR-LWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE------------------ 562 (795)
T ss_dssp ECTTCC-EEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS------------------
T ss_pred ECCCCC-EEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC------------------
Confidence 788887 899875 5799999765332 11100 0 00 1123456888999999999976
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 218 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+|++++++.+.+..+...+|+..+.+.++.++ +|+||+++. +.|.+++.
T Consensus 563 ------------------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~ 612 (795)
T 4a2l_A 563 ------------------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFNP 612 (795)
T ss_dssp ------------------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEET
T ss_pred ------------------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEcC
Confidence 89999998888888877777766778888887 699999994 45666653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-17 Score=145.51 Aligned_cols=229 Identities=14% Similarity=0.103 Sum_probs=159.7
Q ss_pred CCCCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC--ceEEEcc-CC-cEEEeeecCC
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN--GLHKVSE-DG-VENFLSYVNG 72 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~--gi~~~~~-~g-~~~~~~~~~~ 72 (287)
+|++|.||+++ .+++|.+++ ++....+......+ .++++++|+ ||+++... .|++++. .+ ..........
T Consensus 138 ~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~--~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~ 215 (409)
T 3hrp_A 138 AVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG--KPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS 215 (409)
T ss_dssp ECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC--BCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT
T ss_pred EeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC--ceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc
Confidence 47889999998 458999999 45666555443333 288999985 78877543 6999984 44 3222111111
Q ss_pred ccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe----eccc--cccc-eEEEccC
Q 023085 73 SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGF--YFAN-GVALSRD 144 (287)
Q Consensus 73 ~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~--~~~~-~i~~~~~ 144 (287)
.....|+++++++ +|.||+++ ..+.|++++++++....+ .... ..|. +++++|+
T Consensus 216 ~~~~~p~~iav~p~~g~lyv~d------------------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 216 TFSGKIGAVALDETEEWLYFVD------------------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp TSCSCCCBCEECTTSSEEEEEC------------------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred hhcCCcEEEEEeCCCCeEEEEE------------------CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 1346789999999 78999964 245799999987665544 1111 1244 9999997
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCcceeEEecc--------------CCCCCcceeeCCCCCEEEEEe-ccchhHHHHhh
Q 023085 145 EDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--------------LPGAPDNINLAPDGTFWIAII-KLDARRMKILN 209 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~d~~G~lwv~~~-~~~~~~~~~~~ 209 (287)
++.||+++...++|++++.++. ...+... ....|.++++|++|+||++.. .
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~---------- 343 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK---------- 343 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT----------
T ss_pred CCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC----------
Confidence 7789999999999999987642 1112111 123599999999999999987 6
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEECC------CC----ccccceEEEEEe-CCEEEEEecC
Q 023085 210 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP------TG----QLMSFVTSGLQV-DNHLYVISLT 277 (287)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~------~~----~~~~~~~~~~~~-~g~l~i~~~~ 277 (287)
...|.+++ ++|........+ +| ..++.+.+++.+ +++|||+...
T Consensus 344 ------------------------~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 344 ------------------------GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp ------------------------TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred ------------------------CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 35899999 667654444321 11 125678999997 5999999999
Q ss_pred CCeEEEEeCC
Q 023085 278 SNFIGKVQLS 287 (287)
Q Consensus 278 ~~~i~~~~~~ 287 (287)
+++|.++.++
T Consensus 400 n~~Ir~i~~e 409 (409)
T 3hrp_A 400 GKAIRKYAVE 409 (409)
T ss_dssp TCEEEEEEEC
T ss_pred CCeEEEEEeC
Confidence 9999999864
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=163.70 Aligned_cols=225 Identities=12% Similarity=0.141 Sum_probs=156.7
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEee----------CCccccCeEECCCCcEEEEeCCCceEEEcc-CC-cEEEe
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFI----------DSQTLVGLTSTKEGHLIICDNANGLHKVSE-DG-VENFL 67 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~----------~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~-~g-~~~~~ 67 (287)
|++|.||+|+.+++|.+++ .+.+..+... ..... +++.|++|+||+++...||+++++ ++ .+.+.
T Consensus 321 D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 321 DSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNK 399 (781)
T ss_dssp CSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-
T ss_pred eCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEcc
Confidence 7889999999889999999 4566655321 11233 788899999999997789999994 44 44332
Q ss_pred eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc---ccccceEEEccC
Q 023085 68 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGVALSRD 144 (287)
Q Consensus 68 ~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~i~~~~~ 144 (287)
. ....+...+.+++.|++|.||++ +..++|+++++++++++.+... ......++.+++
T Consensus 400 ~-~~~~~~~~v~~i~~d~~g~lWig------------------t~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 460 (781)
T 3v9f_A 400 E-NRELLSNSVLCSLKDSEGNLWFG------------------TYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN 460 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEEE------------------ETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT
T ss_pred C-CCCCCCcceEEEEECCCCCEEEE------------------eccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC
Confidence 1 11223356788999999999995 2346899999988887766432 223455666776
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCcceeEEec--cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCC
Q 023085 145 EDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 222 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (287)
++ ||++.. ..|.+++..+.+......... .....+..++.|++|+||+++..
T Consensus 461 g~-lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~----------------------- 514 (781)
T 3v9f_A 461 KK-IWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG----------------------- 514 (781)
T ss_dssp SE-EEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-----------------------
T ss_pred CC-EEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-----------------------
Confidence 75 899875 679999976533322111000 01234567889999999999984
Q ss_pred ccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 223 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
++|++++++++.+..+..+.+...+.+.++.++ +|+||+++. ++-|.+++
T Consensus 515 ------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 515 ------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp ------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred ------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 379999999888888876666666778888886 799999997 33326554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=167.44 Aligned_cols=220 Identities=12% Similarity=0.085 Sum_probs=156.0
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEee----CCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCc
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFI----DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~----~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~ 73 (287)
|++|.||+||.+++|++++ ++.+..+... ..... +++.|++|+||+++...||++++ .++ ++.+... ..
T Consensus 371 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~--~~ 447 (781)
T 3v9f_A 371 DGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL-CSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE--KN 447 (781)
T ss_dssp CTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE-EEEECTTSCEEEEETTEEEEEECSSSCEEEECCST--TT
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE-EEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC--CC
Confidence 6789999999888999999 3334333211 12334 78889999999999777999999 556 6554321 22
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc------ccccceEEEccCCCE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------FYFANGVALSRDEDY 147 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~ 147 (287)
+...+.+++.|++|.||++ +. ++|++++++++++..+... ......++.+++|+
T Consensus 448 ~~~~v~~i~~d~~g~lwig------------------t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~- 507 (781)
T 3v9f_A 448 ELLDVRVFYEDKNKKIWIG------------------TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR- 507 (781)
T ss_dssp CCCCEEEEEECTTSEEEEE------------------ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-
T ss_pred CCCeEEEEEECCCCCEEEE------------------EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-
Confidence 3356788999999999995 22 5799999987776655322 12345677888887
Q ss_pred EEEEeCCCCEEEEEEecCCCCcceeEEecc--C-CCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKLETFAEN--L-PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
||++.. ++.|++++.++. +...+... . ......++.|++|+||+++..
T Consensus 508 lWigt~-~~Gl~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~------------------------- 558 (781)
T 3v9f_A 508 FWIGTF-GGGVGIYTPDMQ---LVRKFNQYEGFCSNTINQIYRSSKGQMWLATGE------------------------- 558 (781)
T ss_dssp EEEEES-SSCEEEECTTCC---EEEEECTTTTCSCSCEEEEEECTTSCEEEEETT-------------------------
T ss_pred EEEEEc-CCCEEEEeCCCC---eEEEccCCCCCCCCeeEEEEECCCCCEEEEECC-------------------------
Confidence 898875 346999886432 23333211 1 123456888999999999986
Q ss_pred ccccccCCCceEE-EEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 225 FSQFITLGGGAHL-IHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
++ ++++++.+.+..+...+|+..+.+.+++++ +|+||+++..| |.+|+.
T Consensus 559 -----------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G--l~~~~~ 609 (781)
T 3v9f_A 559 -----------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTG--ISCYIT 609 (781)
T ss_dssp -----------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSC--EEEEET
T ss_pred -----------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCc--eEEEEC
Confidence 67 999998777888877777766778888887 79999998544 776653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=145.80 Aligned_cols=231 Identities=14% Similarity=0.163 Sum_probs=155.7
Q ss_pred CCCCCcEEEEecCC-------------------------eEEEEE--CCceEEEEee--CCccccCeEECCCCcEEEEeC
Q 023085 1 MDKNGVIYTATRDG-------------------------WIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDN 51 (287)
Q Consensus 1 ~d~~G~l~~~~~~g-------------------------~i~~~~--~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~ 51 (287)
+|++|+||++...+ .|++++ +++....... ...|. +++++++|+||+++.
T Consensus 31 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d~~g~l~v~d~ 109 (329)
T 3fvz_A 31 LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSIDTDGNYWVTDV 109 (329)
T ss_dssp ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEECTTSCEEEEET
T ss_pred ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEECCCCCEEEEEC
Confidence 47899999998544 589998 4766443321 23677 999999999999986
Q ss_pred C-CceEEEccCC-cEEEeee-c------CCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeC
Q 023085 52 A-NGLHKVSEDG-VENFLSY-V------NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 121 (287)
Q Consensus 52 ~-~gi~~~~~~g-~~~~~~~-~------~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 121 (287)
. +.|.+++.+| ...+... . ....+..|++|++++ +|.+|+++.. ..+.|.++++
T Consensus 110 ~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------~~~~I~~~~~ 173 (329)
T 3fvz_A 110 ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------CNSRIVQFSP 173 (329)
T ss_dssp TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------SCCEEEEECT
T ss_pred CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------CCCeEEEEcC
Confidence 6 5688888665 3222111 0 012355799999998 8999998641 2467899986
Q ss_pred CCCeeE-Eee----------ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec-cCCCCCcceeeCC
Q 023085 122 SSNITT-LVA----------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAP 189 (287)
Q Consensus 122 ~~~~~~-~~~----------~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~ 189 (287)
+ +++. .+. ..+..|.+++++|++..||+++..+++|.+|+.++++. ...+.. .....+.++++.+
T Consensus 174 ~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 174 S-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp T-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTTTCEEEEEEET
T ss_pred C-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEeccccCCCcceeeecC
Confidence 6 5443 332 12355999999999667999999999999999863221 112211 1112344444444
Q ss_pred ------CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEECCCCccccceE
Q 023085 190 ------DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVT 262 (287)
Q Consensus 190 ------~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~ 262 (287)
+|++|++... ...+..++ ..|+.+..+.... ..+..+.
T Consensus 251 g~~~~~~g~~~v~~~~----------------------------------~~~v~~~~~~~g~~~~~~~~~~-~~~~~p~ 295 (329)
T 3fvz_A 251 GFLFAVNGKPYFGDQE----------------------------------PVQGFVMNFSSGEIIDVFKPVR-KHFDMPH 295 (329)
T ss_dssp TEEEEEECCCCTTCSC----------------------------------CCCEEEEETTTCCEEEEECCSS-SCCSSEE
T ss_pred CEEEEeCCCEEeccCC----------------------------------CcEEEEEEcCCCeEEEEEcCCC-CccCCee
Confidence 5555544433 34677787 4588887775322 2356788
Q ss_pred EEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 263 SGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 263 ~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+++.+ +|+||+++..+++|.+|++
T Consensus 296 ~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEECTTSEEEEEESSSCCEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeC
Confidence 89887 6899999999999999986
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-18 Score=160.24 Aligned_cols=217 Identities=14% Similarity=0.164 Sum_probs=152.5
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEee-----CCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeec-
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV- 70 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~-----~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~- 70 (287)
|++|. ||+|+.+++|++++ ++++..+... ..... .++.|++|+||+++. .||++++ .++ ++.+....
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY-AILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE-EEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTT
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE-EEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccc
Confidence 57889 99999988999999 5677666431 12334 788999999999997 7999999 566 65543221
Q ss_pred -CCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----cc--cccceEEEc
Q 023085 71 -NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GF--YFANGVALS 142 (287)
Q Consensus 71 -~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~--~~~~~i~~~ 142 (287)
.......+.++..|++|++|++. . ++|++++++++++ .+.. .+ .....++.+
T Consensus 492 ~~~~~~~~i~~i~~d~~g~lWigt------------------~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d 551 (795)
T 4a2l_A 492 GTPVVSKQITTLFRDSHKRLWIGG------------------E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEA 551 (795)
T ss_dssp CCBCCCCCEEEEEECTTCCEEEEE------------------S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEEC
T ss_pred ccccCCceEEEEEECCCCCEEEEe------------------C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEEC
Confidence 11223467889999999999952 2 5799999877766 4321 11 123456777
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCC----CcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHH
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA----PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 218 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~ 218 (287)
++|+ ||++... +|.+|+.++. +...+. ...+. ..+++.|++|+||+++..
T Consensus 552 ~~g~-lWigT~~--Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~------------------- 605 (795)
T 4a2l_A 552 SNGI-IWVGTRE--GFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNR------------------- 605 (795)
T ss_dssp TTSC-EEEEESS--CEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETT-------------------
T ss_pred CCCC-EEEEeCC--CceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcCC-------------------
Confidence 8887 8888753 7999996543 233332 22233 345788999999999976
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccce--EEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 219 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV--TSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
+|.+++|+...+..|...+|+..+.. .+++.+ +|+||+|+..| +.+|+
T Consensus 606 -----------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G--l~~~~ 656 (795)
T 4a2l_A 606 -----------------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGING--ITTFR 656 (795)
T ss_dssp -----------------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTE--EEEEC
T ss_pred -----------------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCc--eEEEc
Confidence 89999999888888887778755544 344554 79999999865 44443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-16 Score=135.29 Aligned_cols=220 Identities=13% Similarity=0.116 Sum_probs=159.9
Q ss_pred CCCcEEEEecCCeEEEEE-CC-ceEEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcccc
Q 023085 3 KNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~~-~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~~ 76 (287)
+++.|+++.. ..|.+++ ++ ..+........|. ++++|+ +++||+++.. +.|++++.+| .+.+... .+.
T Consensus 43 ~~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----~~~ 116 (349)
T 3v64_C 43 PEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----GLE 116 (349)
T ss_dssp SCCEEEEECB-SCEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCS
T ss_pred cCceeEeecc-cceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----CCC
Confidence 4567788754 4689988 44 4444444455677 999994 6789999865 4688898555 4554321 235
Q ss_pred ccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCC
Q 023085 77 FANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
.|.++++|. .+.||++|.. .+.|.+++++......+ ...+..|++++++|.++.||+++..
T Consensus 117 ~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS
T ss_pred CccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC
Confidence 789999996 6789998644 45799998874433333 3456789999999988889999988
Q ss_pred C-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 155 K-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 155 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
. .+|+++++++.. ...+.......|++|++|+ +++||++...
T Consensus 180 ~~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~--------------------------------- 223 (349)
T 3v64_C 180 NTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAK--------------------------------- 223 (349)
T ss_dssp SSCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred CCCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECC---------------------------------
Confidence 7 899999987532 2222222234699999995 6789999876
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEe
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 285 (287)
.+.|.+++.+|.....+... + ...+.++..++++||++...+++|.+++
T Consensus 224 -~~~I~~~~~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 224 -HHVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp -TTEEEEEETTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEeCCCCceEEEEeC-C--CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 35899999998765555432 2 4567888888999999999999999987
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-17 Score=139.36 Aligned_cols=229 Identities=14% Similarity=0.157 Sum_probs=151.6
Q ss_pred CCCCCcEEEEec---CC--eEEEEECCceEEEEee-------CCccccCeEECCCCcEEEEeCC------CceEEEc-cC
Q 023085 1 MDKNGVIYTATR---DG--WIKRLQDGTWVNWKFI-------DSQTLVGLTSTKEGHLIICDNA------NGLHKVS-ED 61 (287)
Q Consensus 1 ~d~~G~l~~~~~---~g--~i~~~~~~~~~~~~~~-------~~~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~ 61 (287)
++++|++|++.. ++ .|..+++++...+... ...|. ++++|++|+||+++.. ..|++++ .+
T Consensus 24 ~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t 102 (343)
T 2qe8_A 24 LTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN 102 (343)
T ss_dssp ECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEEEECHHHHTSCCEEEEEETTT
T ss_pred ECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEee-EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC
Confidence 357899999852 23 6787775554433211 13567 9999999999999854 5799999 66
Q ss_pred C-cEEEeee--cCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-----
Q 023085 62 G-VENFLSY--VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----- 132 (287)
Q Consensus 62 g-~~~~~~~--~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----- 132 (287)
+ +...... ....+...++++++++ +|.+|+++.+. ...+.|+.+|+.+++...+...
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--------------~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--------------DDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--------------GGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--------------CCCCeEEEEECCCCCEEEEecCCCccc
Confidence 7 3332221 1122234679999996 57899987531 0234566677655544332210
Q ss_pred -------------------------ccccceEEEccCCCEEEEEeCCCCEEEEEEecC---CCCcceeE---Ee-ccCCC
Q 023085 133 -------------------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG---ERKGKLET---FA-ENLPG 180 (287)
Q Consensus 133 -------------------------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~---~~~~~~~~---~~-~~~~~ 180 (287)
...+++++++|+++.||+++..+.+|++++.+. ......+. +. ....+
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP 248 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence 023689999999999999999888999998541 11111110 00 01224
Q ss_pred CCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCcccc
Q 023085 181 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMS 259 (287)
Q Consensus 181 ~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~ 259 (287)
.|+++++|++|+||++... .+.|.++++ +|+.......+ ...
T Consensus 249 ~pdgia~d~~G~l~va~~~----------------------------------~~~V~~~d~~~G~~~~~~~~~---~~~ 291 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLA----------------------------------HSAIGVITSADRAYKLLVTDE---KLS 291 (343)
T ss_dssp SCSCEEECTTCCEEEEEGG----------------------------------GTEEEEEETTTTEEEEEEECG---GGS
T ss_pred CCceEEECCCCCEEEEccC----------------------------------CCeEEEEECCCCCEEEEEECC---cee
Confidence 6999999999999999987 368999999 77755554433 245
Q ss_pred ceEEEEEe-CCEEEEEecCCCeE
Q 023085 260 FVTSGLQV-DNHLYVISLTSNFI 281 (287)
Q Consensus 260 ~~~~~~~~-~g~l~i~~~~~~~i 281 (287)
.+++++++ +++||+++...+++
T Consensus 292 ~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 292 WTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CEEEEEECTTSCEEEEECCGGGS
T ss_pred cCCeeEECCCCcEEEEeCccccc
Confidence 68888886 78999998755443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-16 Score=136.19 Aligned_cols=220 Identities=13% Similarity=0.116 Sum_probs=160.4
Q ss_pred CCCcEEEEecCCeEEEEE-C-CceEEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcccc
Q 023085 3 KNGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~~ 76 (287)
.++.|+++. ...|.+++ + +..+........|. ++++|+ +++||+++.. +.|++++.+| .+.+.. ..+.
T Consensus 86 ~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~----~~~~ 159 (386)
T 3v65_B 86 PEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS----TGLE 159 (386)
T ss_dssp SCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC----SSCS
T ss_pred ccceeEeec-CccceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe----CCCC
Confidence 445677765 45799998 4 44555555556677 999995 6789999866 4688888555 444432 1235
Q ss_pred ccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCC
Q 023085 77 FANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
.|.++++|. .+.||+++.. .+.|.+++++......+ ...+..|++++++|.++.||+++..
T Consensus 160 ~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp CCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred CccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence 789999996 6789998644 45788888874433333 3456789999999988899999988
Q ss_pred C-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 155 K-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 155 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
. .+|+++++++.. ...+.......|++|++|+ +++||++...
T Consensus 223 ~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~--------------------------------- 266 (386)
T 3v65_B 223 NTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAK--------------------------------- 266 (386)
T ss_dssp SSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETT---------------------------------
T ss_pred CCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECC---------------------------------
Confidence 7 899999987532 2233322334699999995 6789999876
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEe
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 285 (287)
.+.|.+++.+|.....+... + ...+.++..+++.||++...+++|.+++
T Consensus 267 -~~~I~~~d~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 267 -HHVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp -TTEEEEECTTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEeCCCCeeEEEEEC-C--CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 35899999998765555432 2 4568888888999999999999999987
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-16 Score=127.91 Aligned_cols=218 Identities=11% Similarity=0.124 Sum_probs=154.2
Q ss_pred cEEEEecCCeEEEEE-CCceE-------EEEeeCCccccCeEECCC-CcEEEEeCC-CceEEEccCC--cEEEeeecCCc
Q 023085 6 VIYTATRDGWIKRLQ-DGTWV-------NWKFIDSQTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGS 73 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~~~~~-------~~~~~~~~~~~~i~~d~d-g~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~ 73 (287)
.||+++. +.|.+++ ++... ....+...|. ++++|++ ++||+++.. +.|++++.++ ...+.. .
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~-gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~ 76 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----Q 76 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----T
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEE-EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----C
Confidence 5788864 5899998 54321 2222334567 9999984 689999876 4689998555 444322 1
Q ss_pred cccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEE
Q 023085 74 KLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 74 ~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~ 151 (287)
.+..|.+++++++ +.||+++.. .+.|.+++++......+. ..+..|++++++|+++.||++
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~ 139 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT 139 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred CCCCccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence 2357899999985 789998643 467899988643333332 345689999999988889999
Q ss_pred eCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 152 ESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 152 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
+.. .++|+++++++.. ...+.......|.++++|++ ++||++...
T Consensus 140 ~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~----------------------------- 187 (267)
T 1npe_A 140 DWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAG----------------------------- 187 (267)
T ss_dssp ECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETT-----------------------------
T ss_pred ECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEEEECC-----------------------------
Confidence 976 5789999976532 22222222346999999986 579999976
Q ss_pred ccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeCC
Q 023085 229 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|.++++++.....+.. + ...+.+++.++++||+++..+++|.+++.+
T Consensus 188 -----~~~I~~~~~~g~~~~~~~~--~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 188 -----THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp -----TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred -----CCEEEEEecCCCceEEEec--C--CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 3589999998765554432 1 245677888899999999999999999863
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-15 Score=128.89 Aligned_cols=220 Identities=9% Similarity=0.117 Sum_probs=156.7
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEc-cC----C-cEEEeeecCCccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-ED----G-VENFLSYVNGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~-~~----g-~~~~~~~~~~~~~ 75 (287)
.|++++. ..|.+++ .+...........|. ++++|+ +++||+++.. +.|++++ .. . .+.+.. ..+
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~-g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSC
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCCCceE-EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCC
Confidence 4677754 4699999 344544444456778 999997 4689999866 5688888 43 2 233221 124
Q ss_pred cccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..|.++++|. .++||++|.. .+.|.+++++....+.+. ..+..|++++++|+++.|||++.
T Consensus 77 ~~p~glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~ 139 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 139 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred CCcCEEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc
Confidence 5789999995 6789998643 467899998744444333 35678999999998888999998
Q ss_pred CC-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 154 WK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 154 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
.. ++|+++++++.. .+.+.......|+++++|+ +++||++...
T Consensus 140 ~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~-------------------------------- 184 (316)
T 1ijq_A 140 GTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK-------------------------------- 184 (316)
T ss_dssp SSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred CCCCeEEEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEECC--------------------------------
Confidence 65 799999986532 2233322334799999996 5789999876
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++.+|...+.+.... .....+.+++.++++||++...+++|.+++.
T Consensus 185 --~~~I~~~d~dg~~~~~~~~~~-~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 185 --LHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp --TTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred --CCeEEEEecCCCceEEEeecC-CccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 358999999987666554321 2245678888889999999999999999874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-15 Score=129.82 Aligned_cols=203 Identities=13% Similarity=0.072 Sum_probs=140.1
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEEEEeeCC------ccccCeEECCCCcEEEEeC--CCceEEEc-cCC-cEEEee
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDS------QTLVGLTSTKEGHLIICDN--ANGLHKVS-EDG-VENFLS 68 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~------~~~~~i~~d~dg~l~v~~~--~~gi~~~~-~~g-~~~~~~ 68 (287)
+++|.||+++ .++.|.+++ +++......... .|. ++++ .+++||+++. .+.|.++| .++ ......
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 3578999998 789999999 556554444444 677 8988 5789999985 45799999 666 333222
Q ss_pred ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--cccccceEEEccCCC
Q 023085 69 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDED 146 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 146 (287)
. ...|.+++++++|++|++.... +....| ....+.|+++|++++++..... ....|++++++|+++
T Consensus 170 ~-----g~~p~~i~~~~dG~l~v~~~~~-~~~~~~------~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 170 I-----GIQPTSLVMDKYNKMWTITDGG-YEGSPY------GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp C-----SSCBCCCEECTTSEEEEEBCCB-CTTCSS------CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred c-----CCCccceEEcCCCCEEEEECCC-ccCCcc------ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 1 1357899999999999985431 000000 0013689999998887654322 134789999999999
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
.||+++. .|+++|.++.+.... .+.......|.++++|+ +|+||++....
T Consensus 238 ~lyv~~~---~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~~~~------------------------- 288 (328)
T 3dsm_A 238 TLYWINN---DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVADAID------------------------- 288 (328)
T ss_dssp EEEEESS---SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEECTT-------------------------
T ss_pred EEEEEcc---EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEcccc-------------------------
Confidence 9999975 799999865443211 12211134699999998 78999998220
Q ss_pred cccccCCCceEEEEECCCCcEEEEEEC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVD 252 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~ 252 (287)
-...+.|.+|+++|+.++.+..
T Consensus 289 -----y~~~~~V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 289 -----YQQQGIVYRYSPQGKLIDEFYV 310 (328)
T ss_dssp -----SSSEEEEEEECTTCCEEEEEEE
T ss_pred -----cccCCEEEEECCCCCEEEEEEe
Confidence 0014689999999999998875
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=125.60 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=136.3
Q ss_pred ccccCeEECCCCcEEE-EeCC-CceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 33 QTLVGLTSTKEGHLII-CDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v-~~~~-~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.|. +++++++|+||+ ++.. ++|.+++..+ ...... ......|.+++++++|++|+++
T Consensus 25 ~p~-~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~---------------- 84 (270)
T 1rwi_B 25 SPS-GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---FNGLYQPQGLAVDGAGTVYVTD---------------- 84 (270)
T ss_dssp CEE-EEEECTTCCEEEEECSSSCEEEEECC-----EECC---CCSCCSCCCEEECTTCCEEEEE----------------
T ss_pred Ccc-ceEECCCCCEEEEccCCCCcEEEecCCCcccceEe---eCCcCCcceeEECCCCCEEEEc----------------
Confidence 677 899999999999 7543 5799998444 322211 1123578899999999999974
Q ss_pred cCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 110 GKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
. .+.|++++++++....+. .....|.+++++++++ +|+++...++|.+++..... ...........|.++++|
T Consensus 85 -~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~ 158 (270)
T 1rwi_B 85 -F-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVD 158 (270)
T ss_dssp -T-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS---CEECCCCSCCSCCCEEEC
T ss_pred -C-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce---eEeeccccCCCceeEEEe
Confidence 1 458999998765554433 3346789999999987 99999878899999643211 111111122368999999
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV- 267 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 267 (287)
++|+||++... .+.|.++++++........ .+ ...+.+++.+
T Consensus 159 ~~g~l~v~~~~----------------------------------~~~i~~~~~~~~~~~~~~~-~~--~~~p~~i~~d~ 201 (270)
T 1rwi_B 159 NSGNVYVTDTD----------------------------------NNRVVKLEAESNNQVVLPF-TD--ITAPWGIAVDE 201 (270)
T ss_dssp TTCCEEEEEGG----------------------------------GTEEEEECTTTCCEEECCC-SS--CCSEEEEEECT
T ss_pred CCCCEEEEECC----------------------------------CCEEEEEecCCCceEeecc-cC--CCCceEEEECC
Confidence 99999999875 3589999998766554332 22 2567888887
Q ss_pred CCEEEEEecCCCeEEEEeCC
Q 023085 268 DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 268 ~g~l~i~~~~~~~i~~~~~~ 287 (287)
+|+||+++..++.|.+++.+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp TCCEEEEETTTSCEEEECTT
T ss_pred CCCEEEEECCCCcEEEEcCC
Confidence 68999999999999998753
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-15 Score=131.36 Aligned_cols=220 Identities=10% Similarity=0.121 Sum_probs=157.6
Q ss_pred CcEEEEecCCeEEEEE-C-CceEEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC------cEEEeeecCCcc
Q 023085 5 GVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLSYVNGSK 74 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g------~~~~~~~~~~~~ 74 (287)
..|++++ ...|.+++ + ............+. ++++|+ +++||+++.. +.|++++.++ .+.+.. ..
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~-~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----~~ 157 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RD 157 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----SS
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcce-EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----CC
Confidence 3566664 46899998 4 44455544556777 999996 6789999866 4588887443 222221 12
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|.+|++|. .++||++|.. .+.|.+++++......+ ...+..|.+|+++|.++.|||++
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td 220 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 220 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEE
T ss_pred CCCcccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEe
Confidence 45789999997 6899998644 46899999875444433 34677899999999888899999
Q ss_pred CCC-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc
Q 023085 153 SWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 230 (287)
Q Consensus 153 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
... .+|+++++++.. ...+.......|.+|++|+ +++||++...
T Consensus 221 ~~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~~------------------------------- 266 (400)
T 3p5b_L 221 WGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------- 266 (400)
T ss_dssp CSSSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETT-------------------------------
T ss_pred CCCCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCCEEEEEECC-------------------------------
Confidence 763 789999987532 2233322334799999995 6789999876
Q ss_pred CCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEe
Q 023085 231 LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 231 ~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 285 (287)
...|.+++.+|...+.+.... ..+..+.++..++++||++...+++|.+++
T Consensus 267 ---~~~I~~~d~dG~~~~~~~~~~-~~l~~P~gl~v~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 267 ---LHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp ---TTEEEEEETTSCCCEEEEECS-STTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred ---CCEEEEEeCCCCccEEEEeCC-CCCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence 358999999987666654322 235677888888999999999999999987
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-15 Score=125.55 Aligned_cols=197 Identities=15% Similarity=0.225 Sum_probs=141.2
Q ss_pred ccccCeEECCCCcEEEEeCC-CceEEEccCC--cEEEeeec-CCccccccceEEE-cCCCcEEEEcCCCCCCCcceeeee
Q 023085 33 QTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VENFLSYV-NGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~-~~~~~~~~~~l~~-d~~g~l~v~~~~~~~~~~~~~~~~ 107 (287)
.|. +++++++|++|+++.. +.|.+++.++ ...+.... .......|.++++ +++|++|+++..
T Consensus 31 ~p~-~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~------------ 97 (286)
T 1q7f_A 31 EPS-GVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS------------ 97 (286)
T ss_dssp CEE-EEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG------------
T ss_pred CCc-eEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC------------
Confidence 466 8999999999999754 5699998556 44442211 1122457889999 588999997522
Q ss_pred eccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec-cCCCCCcce
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNI 185 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i 185 (287)
..+.|.+++++...+..+. .....|++++++++++ +|+++...++|.+|+.++. ....+.. .....|.++
T Consensus 98 ----~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 98 ----PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp ----GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEE
T ss_pred ----CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC---EEEEeCCCCccCCcEEE
Confidence 1457999996533333332 2345789999999997 9999988889999986432 1222221 122358999
Q ss_pred eeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEE
Q 023085 186 NLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGL 265 (287)
Q Consensus 186 ~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 265 (287)
++|++|++|++... .+.|.+++++++.+..+... +. ...+.+++
T Consensus 170 ~~~~~g~l~v~~~~----------------------------------~~~i~~~~~~g~~~~~~~~~-g~-~~~p~~i~ 213 (286)
T 1q7f_A 170 VVNDKQEIFISDNR----------------------------------AHCVKVFNYEGQYLRQIGGE-GI-TNYPIGVG 213 (286)
T ss_dssp EECSSSEEEEEEGG----------------------------------GTEEEEEETTCCEEEEESCT-TT-SCSEEEEE
T ss_pred EECCCCCEEEEECC----------------------------------CCEEEEEcCCCCEEEEEccC-Cc-cCCCcEEE
Confidence 99999999999865 35899999999888877643 22 35678888
Q ss_pred Ee-CCEEEEEecCCC-eEEEEeC
Q 023085 266 QV-DNHLYVISLTSN-FIGKVQL 286 (287)
Q Consensus 266 ~~-~g~l~i~~~~~~-~i~~~~~ 286 (287)
.+ +|+||+++..++ .|.+++.
T Consensus 214 ~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 214 INSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ECTTCCEEEEECSSSCEEEEECT
T ss_pred ECCCCCEEEEeCCCCEEEEEECC
Confidence 87 689999998886 9999874
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-15 Score=131.73 Aligned_cols=226 Identities=12% Similarity=0.113 Sum_probs=158.5
Q ss_pred CCcEEEEec-CCeEEEEE--CCceEEEEeeC----CccccCeEE-------CCCCc-EEEEeCCC-------ceEEEc--
Q 023085 4 NGVIYTATR-DGWIKRLQ--DGTWVNWKFID----SQTLVGLTS-------TKEGH-LIICDNAN-------GLHKVS-- 59 (287)
Q Consensus 4 ~G~l~~~~~-~g~i~~~~--~~~~~~~~~~~----~~~~~~i~~-------d~dg~-l~v~~~~~-------gi~~~~-- 59 (287)
+++||++.. .++|.+++ ++....+.... ..|. +|++ +++|+ ||+++... .+++++
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 478999885 46788898 44555544332 2477 8999 99997 99998663 377776
Q ss_pred cCC-cE------EEeeecCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-------CC
Q 023085 60 EDG-VE------NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-------SN 124 (287)
Q Consensus 60 ~~g-~~------~~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~ 124 (287)
.+| +. .+. ....|+++++++ ++.||+++.. .+.|+++|++ ++
T Consensus 230 ~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-----------------~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 230 ADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-----------------KGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp TTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-----------------TTEEEEECHHHHHHHHHTT
T ss_pred CCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-----------------CCEEEEEecccccccccCc
Confidence 335 42 222 235789999998 6899998643 5679999986 45
Q ss_pred ee------------EEe--eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC--CcceeEEecc-----------
Q 023085 125 IT------------TLV--ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLETFAEN----------- 177 (287)
Q Consensus 125 ~~------------~~~--~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~--~~~~~~~~~~----------- 177 (287)
.+ ..+ ......|.+++++|+++.||++++..++|++++.++.. +.....+...
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~ 366 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG 366 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence 43 111 12234678999999999999999999999999876531 1111222211
Q ss_pred ---CCCCCc-ceeeC-------CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE
Q 023085 178 ---LPGAPD-NINLA-------PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI 246 (287)
Q Consensus 178 ---~~~~~~-~i~~d-------~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~ 246 (287)
.-..|. +++.| ++|+|||+... ...|.+++++|..
T Consensus 367 ~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----------------------------------N~rIr~i~~~G~v 412 (496)
T 3kya_A 367 TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----------------------------------NFCVRKVTPEGIV 412 (496)
T ss_dssp GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----------------------------------GTEEEEECTTCBE
T ss_pred cccccCCCeEEEEEccccccccCCCeEEEEECC----------------------------------CCEEEEEeCCCCE
Confidence 112477 77887 68999999987 3589999999966
Q ss_pred EEEEECC--------------CC-----ccccceEEEEEe-C-CEEEEEecCCCeEEEEeCC
Q 023085 247 IRNLVDP--------------TG-----QLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 247 ~~~~~~~--------------~~-----~~~~~~~~~~~~-~-g~l~i~~~~~~~i~~~~~~ 287 (287)
....... +| -.++.+.+++.+ + |+|||+...+++|.+++++
T Consensus 413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 5554321 22 135678999998 3 9999999999999999863
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-16 Score=146.68 Aligned_cols=221 Identities=14% Similarity=0.191 Sum_probs=141.1
Q ss_pred CCCCcEEEEecCCeEEEEE--CC---ceEEEEee-------CCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEe
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DG---TWVNWKFI-------DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL 67 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~---~~~~~~~~-------~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~ 67 (287)
|++|.||+|+. +++.+++ ++ .+..+... ..... .+..|++|+||+++. .||.+++ .++ ++.+.
T Consensus 332 D~~g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~ 408 (758)
T 3ott_A 332 DSKGFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR-HIYEDKEQQLWIATD-GSINRYDYATRQFIHYN 408 (758)
T ss_dssp CTTCCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE-EEEECTTSCEEEEET-TEEEEEETTTTEEEEEE
T ss_pred cCCCCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceE-EEEECCCCCEEEEeC-CcHhhcCcCCCcEEEee
Confidence 67899999995 5799998 22 23333211 11223 788899999999994 5999999 566 66654
Q ss_pred eecC-C-ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC------CeeE---Eee--ccc-
Q 023085 68 SYVN-G-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS------NITT---LVA--DGF- 133 (287)
Q Consensus 68 ~~~~-~-~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~---~~~--~~~- 133 (287)
.... . .+...+.++..|++|+||++ +..++|+++++++ +.+. .+. ..+
T Consensus 409 ~~~~~~~~~~~~v~~i~~d~~g~lWig------------------T~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (758)
T 3ott_A 409 IVDNTGTYNTNWTYYIFEDTAGQLWIS------------------TCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLS 470 (758)
T ss_dssp EECCC--CBSSSEEEEEECTTSEEEEE------------------ESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCS
T ss_pred cCCCcCCCCCceEEEEEEcCCCCEEEE------------------ECCCceEEEccccccccCCcceecccccccccccc
Confidence 2211 1 12345778999999999995 2335799998642 1221 111 111
Q ss_pred -cccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-C--CCCCcceeeCCCCCEEEEEeccchhHHHHhh
Q 023085 134 -YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-L--PGAPDNINLAPDGTFWIAIIKLDARRMKILN 209 (287)
Q Consensus 134 -~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~ 209 (287)
.....+..+++|+ ||+......+|.+++.+.. +...+... . ...+..+..|++|+||+++..
T Consensus 471 ~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~---------- 536 (758)
T 3ott_A 471 GMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTR---EVTKLFADELTGEKSPNYLLCDEDGLLWVGFHG---------- 536 (758)
T ss_dssp CSCEEEEEECTTSC-EEEEETTCSSEEEEETTTT---EEEEECTTTSCGGGCEEEEEECTTSCEEEEETT----------
T ss_pred cceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCC---ceEEecCCCcCCCcccceEEECCCCCEEEEecC----------
Confidence 1245577788887 8883222467999996543 23233211 1 124567889999999999965
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 210 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+|.+++|+.+....+. .+++..+.+.++.+++|+||+++.. -|.+|+.
T Consensus 537 --------------------------Gl~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t~~--Gl~~~~~ 584 (758)
T 3ott_A 537 --------------------------GVMRINPKDESQQSIS-FGSFSNNEILSMTCVKNSIWVSTTN--GLWIIDR 584 (758)
T ss_dssp --------------------------EEEEECC--CCCCBCC-CCC---CCEEEEEEETTEEEEEESS--CEEEEET
T ss_pred --------------------------ceEEEecCCCceEEec-ccCCCccceEEEEECCCCEEEECCC--CeEEEcC
Confidence 8999999876666654 3566566788888889999999954 4666653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=144.26 Aligned_cols=213 Identities=16% Similarity=0.217 Sum_probs=138.8
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeC-------CccccCeEECCCCcEEEEeCCCceEEEc-cCC-c---EEEe
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFID-------SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V---ENFL 67 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~-------~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~---~~~~ 67 (287)
|++|.||+|| .++|.+++ ++++..+.... .... .+..|++|+||+++...||++++ .+. . ..+.
T Consensus 381 d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~ 458 (758)
T 3ott_A 381 DKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYI 458 (758)
T ss_dssp CTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEE
T ss_pred CCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEccccccccCCccee
Confidence 6789999999 46899999 56776665321 1223 68889999999999778999998 321 0 1121
Q ss_pred -----eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc----ccccce
Q 023085 68 -----SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYFANG 138 (287)
Q Consensus 68 -----~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~ 138 (287)
....+.+...+.++..|++|+||++. + ..++|++++++++++..+... ...++.
T Consensus 459 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~----------------~-t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~ 521 (758)
T 3ott_A 459 AEQNYSVHNGLSGMFINQIIPDNEGNVWVLL----------------Y-NNKGIDKINPRTREVTKLFADELTGEKSPNY 521 (758)
T ss_dssp CSEEECGGGTCSCSCEEEEEECTTSCEEEEE----------------T-TCSSEEEEETTTTEEEEECTTTSCGGGCEEE
T ss_pred cccccccccccccceeeeEEEcCCCCEEEEc----------------c-CCCCcEEEeCCCCceEEecCCCcCCCcccce
Confidence 11222333457889999999999921 1 235799999988887766321 123456
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC-CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHH
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 217 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 217 (287)
+..+.+|+ ||++.. ++|.+|+.++....... . ..++ ..+.++..| +|+||+++..
T Consensus 522 i~~d~~g~-lWigt~--~Gl~~~~~~~~~~~~~~-~-~gl~~~~i~~i~~~-~g~lWi~t~~------------------ 577 (758)
T 3ott_A 522 LLCDEDGL-LWVGFH--GGVMRINPKDESQQSIS-F-GSFSNNEILSMTCV-KNSIWVSTTN------------------ 577 (758)
T ss_dssp EEECTTSC-EEEEET--TEEEEECC--CCCCBCC-C-CC---CCEEEEEEE-TTEEEEEESS------------------
T ss_pred EEECCCCC-EEEEec--CceEEEecCCCceEEec-c-cCCCccceEEEEEC-CCCEEEECCC------------------
Confidence 77787786 888863 57999997644332221 0 1111 224456665 8999999976
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEE-eCCEEEEEecCC
Q 023085 218 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTS 278 (287)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~ 278 (287)
+|.+++|+...+..+..++.. +. ..+.. .+|+||+|+..|
T Consensus 578 ------------------Gl~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 578 ------------------GLWIIDRKTMDARQQNMTNKR-FT--SLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp ------------------CEEEEETTTCCEEEC--CCCC-CS--EEEEETTTTEEEEECBSE
T ss_pred ------------------CeEEEcCCCceeEEecCCCCc-ee--eeEEECCCCcEEEecCCc
Confidence 899999987777777654432 22 23333 379999998764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=137.39 Aligned_cols=220 Identities=9% Similarity=0.106 Sum_probs=157.1
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECC-CCcEEEEeCCC-ceEEEccCC------cEEEeeecCCcc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG------VENFLSYVNGSK 74 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~~-gi~~~~~~g------~~~~~~~~~~~~ 74 (287)
..|+++. ...|.+++ ......+......+. +++++. +++||+++... .|++++.+| .+.+. ...
T Consensus 396 p~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi----~~~ 469 (791)
T 3m0c_C 396 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRD 469 (791)
T ss_dssp CEEEEEC-BSSEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE----CSS
T ss_pred ccccccc-ccceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE----ecC
Confidence 4566664 34688887 344455554555677 899997 67899998764 578877443 12222 123
Q ss_pred ccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|.+|++|.. ++||++|.. .+.|.+++++....+.+ ...+..|.+|+++|.++.|||++
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD 532 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 532 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred CCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEec
Confidence 468899999975 489998644 46899999874444433 34677899999999888899999
Q ss_pred CCC-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc
Q 023085 153 SWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 230 (287)
Q Consensus 153 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
... .+|.++++++. ....+.......|.+|++|. +++||++...
T Consensus 533 ~g~~~~I~~~~~dG~---~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~------------------------------- 578 (791)
T 3m0c_C 533 WGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------- 578 (791)
T ss_dssp CSSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETT-------------------------------
T ss_pred CCCCCeEEEEecCCC---ceEEEEeCCCCCceEEEEecCCCeEEEEeCC-------------------------------
Confidence 765 78999998753 22333333334799999994 7889999876
Q ss_pred CCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEe
Q 023085 231 LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 231 ~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 285 (287)
...|.+++.+|.....+.... ..+..+.++...+++||++....+.|.+++
T Consensus 579 ---~~~I~~~d~dG~~~~~v~~~~-~~l~~P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 579 ---LHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ---TTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred ---CCcEEEEecCCCceEEEecCC-CccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence 358999999987666654322 235667888888899999999999999986
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-14 Score=122.50 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=156.9
Q ss_pred CCCcEEEEecCCeEEEEE-CCc---eEEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--c-EEEeeecCCc
Q 023085 3 KNGVIYTATRDGWIKRLQ-DGT---WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--V-ENFLSYVNGS 73 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~~~---~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~-~~~~~~~~~~ 73 (287)
++..|+++. ...|.+++ ++. ..........+. ++.+++ +++||+++.. +.|++++.+| . +.+...
T Consensus 3 ~~p~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~---- 76 (318)
T 3sov_A 3 SAPLLLYAN-RRDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS---- 76 (318)
T ss_dssp -CCEEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----
T ss_pred CccEEEEEc-cCeEEEEECCCCceEEEEEecCCCccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----
Confidence 345688875 45799998 443 223322333556 778886 5789999866 4588888554 2 232221
Q ss_pred cccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEE
Q 023085 74 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 74 ~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~ 151 (287)
.+..|.++++|. .+.||++|.. .+.|.+++++....+.+. ..+..|++++++|.++.||++
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~t 139 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT 139 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEE
T ss_pred CCCCccEEEEEcCCCeEEEEECC-----------------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 235789999995 7899998643 467999998744333333 567789999999988889999
Q ss_pred eCC-CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 152 ESW-KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 152 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
+.. ..+|+++++++.. ...+.......|++|++|+ +++||++...
T Consensus 140 d~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pnglavd~~~~~lY~aD~~------------------------------ 186 (318)
T 3sov_A 140 DWGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAK------------------------------ 186 (318)
T ss_dssp ECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETT------------------------------
T ss_pred ecCCCCEEEEEEcCCCC---eEEEEECCCCCccEEEEeccCCEEEEEECC------------------------------
Confidence 965 5899999987532 2223322234699999997 6789999876
Q ss_pred cCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 230 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 230 ~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++.+|...+.+... . ...+.+++.+++.||++...+++|.+++.
T Consensus 187 ----~~~I~~~d~dG~~~~~~~~~-~--~~~P~glav~~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 187 ----LNFIHKSNLDGTNRQAVVKG-S--LPHPFALTLFEDILYWTDWSTHSILACNK 236 (318)
T ss_dssp ----TTEEEEEETTSCSCEEEECS-C--CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred ----CCEEEEEcCCCCceEEEecC-C--CCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence 35899999998766665531 1 45688888889999999999999999875
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-14 Score=121.01 Aligned_cols=205 Identities=16% Similarity=0.222 Sum_probs=140.0
Q ss_pred CCcEEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCC-c-EEEeeecCCccccccce
Q 023085 4 NGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-V-ENFLSYVNGSKLRFAND 80 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~-~~~~~~~~~~~~~~~~~ 80 (287)
+|.||+++.+++|++++ +++..............++++++|+||+++...+|++++..| . ..+. . ....+..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~-~----~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK-T----NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEE-C----SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe-c----CCCceee
Confidence 68899999999999999 644432222222222278889999999998767999999447 3 2322 1 1234567
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCR 159 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~ 159 (287)
++++++|.+|++ + ++|+++++ +++... ..........+++++++. +|++.. ++.|+
T Consensus 182 ~~~d~~g~l~v~------------------t--~~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~~gl~ 238 (330)
T 3hxj_A 182 ASIGKDGTIYFG------------------S--DKVYAINP-DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-DGHLY 238 (330)
T ss_dssp CEECTTCCEEEE------------------S--SSEEEECT-TSCEEEEECCSSCCCSCCEECTTSC-EEEEET-TTEEE
T ss_pred eEEcCCCEEEEE------------------e--CEEEEECC-CCcEEEEEccCCcceeceEECCCCe-EEEEcC-CCeEE
Confidence 788999999995 2 67999994 454332 222223456777888776 888865 56899
Q ss_pred EEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEE
Q 023085 160 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH 239 (287)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (287)
+++.++.. ...+. .....+..+++|++|+||+++.. ++|++
T Consensus 239 ~~~~~g~~---~~~~~-~~~~~~~~~~~~~~g~l~v~t~~-----------------------------------ggl~~ 279 (330)
T 3hxj_A 239 AINPDGTE---KWRFK-TGKRIESSPVIGNTDTIYFGSYD-----------------------------------GHLYA 279 (330)
T ss_dssp EECTTSCE---EEEEE-CSSCCCSCCEECTTSCEEEECTT-----------------------------------CEEEE
T ss_pred EECCCCCE---eEEee-CCCCccccceEcCCCeEEEecCC-----------------------------------CCEEE
Confidence 99743321 22222 22234556888999999999976 58999
Q ss_pred ECCCCcEEEEEECCCCccccceEEEEE-eCCEEEEEecCCC
Q 023085 240 VAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSN 279 (287)
Q Consensus 240 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~ 279 (287)
++++|+.+..+..+. ..+.++.. .+|+||+++..|-
T Consensus 280 ~d~~g~~~~~~~~~~----~~~~~~~~d~~g~l~~gt~~G~ 316 (330)
T 3hxj_A 280 INPDGTEKWNFETGS----WIIATPVIDENGTIYFGTRNGK 316 (330)
T ss_dssp ECTTSCEEEEEECSS----CCCSCCEECTTCCEEEECTTSC
T ss_pred ECCCCcEEEEEEcCC----ccccceEEcCCCEEEEEcCCCe
Confidence 999999888887543 24556666 4799999987654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=123.89 Aligned_cols=224 Identities=7% Similarity=-0.014 Sum_probs=150.7
Q ss_pred CCcEEEEec-CCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEe-CCCceEEEc-cCC-cEEEeeecC-Ccccc
Q 023085 4 NGVIYTATR-DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVN-GSKLR 76 (287)
Q Consensus 4 ~G~l~~~~~-~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~-~~~gi~~~~-~~g-~~~~~~~~~-~~~~~ 76 (287)
++.+|+++. ++.|..++ +++..........|. +++++++|++|+++ ....|.++| .++ +........ .....
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~ 131 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESG 131 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence 468999884 57899999 566543333446777 99998899999998 556799999 666 443222111 11123
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC-
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK- 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~- 155 (287)
.|.+|++ .++.+|+++.+ ..+.|..+|+.++++.........|++++++++|+ +|++....
T Consensus 132 ~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~ 193 (328)
T 3dsm_A 132 STEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGY 193 (328)
T ss_dssp BCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBC
T ss_pred CcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCc
Confidence 6788888 57899997531 24689999998888655444456789999999997 88887654
Q ss_pred ---------CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 156 ---------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 156 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+.|.++|.++.+.. ..+.......|.+++++++| .||++..
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~--~~~~~~~g~~p~~la~~~d~~~lyv~~~--------------------------- 244 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVE--KQFKFKLGDWPSEVQLNGTRDTLYWINN--------------------------- 244 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEE--EEEECCTTCCCEEEEECTTSCEEEEESS---------------------------
T ss_pred cCCccccCCceEEEEECCCCeEE--EEEecCCCCCceeEEEecCCCEEEEEcc---------------------------
Confidence 78999997543211 12211112369999999876 5777543
Q ss_pred cccccCCCceEEEEECCCCcEEEEEE-CCCCccccceEEEEEe--CCEEEEEe----cCCCeEEEEeCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLV-DPTGQLMSFVTSGLQV--DNHLYVIS----LTSNFIGKVQLS 287 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~--~g~l~i~~----~~~~~i~~~~~~ 287 (287)
.|+++|++...+.... .+.+ ...+.+++.+ +++||+++ ..++.|.+|+.+
T Consensus 245 ----------~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 ----------DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp ----------SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred ----------EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 4678887643322111 1111 2457888885 69999999 778899999864
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=124.76 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=124.7
Q ss_pred CCCcEEEEe-cCCeEEEEE-CCc-eEEEEe-eCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DGT-WVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~~-~~~~~~-~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
.++.||+++ .+++|++++ ++. .+.+.. ....|. ++++|+ .|+||+++.. +.|.+++.+| .+.+.. ..
T Consensus 83 ~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~ 157 (349)
T 3v64_C 83 RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW----QS 157 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----TT
T ss_pred cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe----CC
Confidence 467899987 678999999 543 333332 234677 999996 6789999866 4688888666 444432 12
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|++|++|+ +|.||++|.. ..+.|++++++....+.+ ...+..|+|++++++++.|||++
T Consensus 158 l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 158 LEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 46789999997 6789998644 136899999874333333 34577899999999888999999
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...++|.++++++. ..+.+.......|.+++++ +++||++...
T Consensus 222 ~~~~~I~~~~~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~ 264 (349)
T 3v64_C 222 AKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWH 264 (349)
T ss_dssp TTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred CCCCEEEEEeCCCC---ceEEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence 99999999998753 2233332334579999995 6789999987
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-14 Score=120.17 Aligned_cols=171 Identities=17% Similarity=0.163 Sum_probs=123.0
Q ss_pred CCcEEEEe-cCCeEEEEE-CCce---EEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcc
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DGTW---VNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~~~---~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
++.||+++ .++.|.+++ ++.. .........|. ++++|+ .|+||+++.. +.|.+++.+| .+.+.. ..
T Consensus 46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~ 120 (318)
T 3sov_A 46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QE 120 (318)
T ss_dssp GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SS
T ss_pred CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe----CC
Confidence 57899887 668899998 4432 22333345678 999996 6789999866 4688888666 444432 22
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|+++++|+ .|.||+++.+ ....|++++++....+.+ ...+..|+|++++++++.||+++
T Consensus 121 ~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 121 LDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp CSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 46789999997 5889998633 246899999873333333 35678899999999888999999
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+..++|+++++++. ..+.+.......|.++++|.+ .+|++...
T Consensus 185 ~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~~-~lywtd~~ 227 (318)
T 3sov_A 185 AKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFED-ILYWTDWS 227 (318)
T ss_dssp TTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEETT-EEEEEETT
T ss_pred CCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeCC-EEEEEecC
Confidence 99999999998753 223343333457999999854 67777765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-15 Score=125.58 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=132.4
Q ss_pred ccccCeEECCCCcEEEEeCCC-------------------------ceEEEc-cCC-cEEEeeecCCccccccceEEEcC
Q 023085 33 QTLVGLTSTKEGHLIICDNAN-------------------------GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 85 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~~-------------------------gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~ 85 (287)
.+. +++++++|++|+++... .|++++ .+| +.... ....+..|.++++++
T Consensus 25 ~v~-~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~---~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 25 QVS-GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS---GKNLFYLPHGLSIDT 100 (329)
T ss_dssp CEE-EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE---CTTTCSSEEEEEECT
T ss_pred Cce-EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc---CCCccCCceEEEECC
Confidence 455 89999999999998664 388888 557 43321 122356899999999
Q ss_pred CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC--eeEEee---------ccccccceEEEccCCCEEEEEeC-
Q 023085 86 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVA---------DGFYFANGVALSRDEDYVVVCES- 153 (287)
Q Consensus 86 ~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~---------~~~~~~~~i~~~~~~~~l~v~~~- 153 (287)
+|++|+++.. .+.|.+++++.. .+..+. ..+..|++++++|++..+|+++.
T Consensus 101 ~g~l~v~d~~-----------------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 101 DGNYWVTDVA-----------------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp TSCEEEEETT-----------------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred CCCEEEEECC-----------------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 9999998643 467999998744 233332 23457999999994445999996
Q ss_pred CCCEEEEEEecCCCCcceeEEec------cCCCCCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 154 WKFRCRKYWLKGERKGKLETFAE------NLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
..++|.+|+.++........... .....|.++++|++ |+||++...
T Consensus 164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--------------------------- 216 (329)
T 3fvz_A 164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--------------------------- 216 (329)
T ss_dssp SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---------------------------
T ss_pred CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---------------------------
Confidence 68899999955421111111000 01124899999998 899999976
Q ss_pred ccccCCCceEEEEECCC-CcEEEEEECCCCccccceEE------EEE-eCCEEEEEecCCCeEEEEeC
Q 023085 227 QFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTS------GLQ-VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~------~~~-~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++++ |+.+..+..+... ..+.. +.. .++++|+++.....|.++++
T Consensus 217 -------~~~I~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 217 -------NGRIQCFKTDTKEFVREIKHASFG--RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp -------TTEEEEEETTTCCEEEEECCTTTT--TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEET
T ss_pred -------CCEEEEEECCCCcEEEEEeccccC--CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEc
Confidence 3589999988 8888887543211 11221 222 25677777777777777764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-14 Score=116.62 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=135.3
Q ss_pred CCcEEEEe-cCCeEEEEE-CCce-EEEEee-CCccccCeEECCC-CcEEEEeCC-CceEEEccCC--cEEEeeecCCccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DGTW-VNWKFI-DSQTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~~~-~~~~~~-~~~~~~~i~~d~d-g~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~ 75 (287)
++.||+++ .++.|.+++ ++.. ..+... ...|. ++++|++ ++||+++.. +.|.+++.+| .+.+... .+
T Consensus 47 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~----~~ 121 (267)
T 1npe_A 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT----GL 121 (267)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SC
T ss_pred CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC----CC
Confidence 56899988 567999999 5443 333222 24677 9999985 689999866 4688888666 4444221 23
Q ss_pred cccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..|+++++++ .|.||+++.. ...+.|++++++......+. ..+..|++++++++++.||+++.
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred CCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 5789999998 5889998633 11357888887633333332 44678999999999889999999
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
..++|.+++.++. ....+.. ....|.++++| +++||++...
T Consensus 187 ~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d-~~~lyva~~~---------------------------------- 227 (267)
T 1npe_A 187 GTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY-GKNLYYTDWK---------------------------------- 227 (267)
T ss_dssp TTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE-TTEEEEEETT----------------------------------
T ss_pred CCCEEEEEecCCC---ceEEEec-CCCCceEEEEe-CCEEEEEECC----------------------------------
Confidence 9999999997642 2222322 23468999998 6889999876
Q ss_pred ceEEEEECCC-CcEEEEEEC
Q 023085 234 GAHLIHVAED-GTIIRNLVD 252 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~ 252 (287)
.+.|.+++++ ++.+..+..
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTEEEEEETTTTEEEEEECC
T ss_pred CCeEEEEeCCCCCceEEEcc
Confidence 3589999986 677777753
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-14 Score=122.93 Aligned_cols=191 Identities=11% Similarity=0.119 Sum_probs=137.0
Q ss_pred CCCcEEEEe-cCCeEEEEE-CCc-eEEEEe-eCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DGT-WVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~~-~~~~~~-~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
.++.||+++ .+++|++++ ++. .+.+.. ....|. ++++|+ .++||+++.. +.|.+++.+| .+.+.. ..
T Consensus 126 ~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~----~~ 200 (386)
T 3v65_B 126 RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW----QS 200 (386)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC----SS
T ss_pred CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec----CC
Confidence 467899887 678999999 544 333332 234678 999996 6789999866 4688887666 444432 12
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|++|++|+ +|.||++|.. ..+.|++++++......+ ...+..|+||+++++++.|||++
T Consensus 201 l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 201 LEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred CCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 46789999996 5789998644 236899999874333333 34577899999999888999999
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
+..++|+++++++. ..+.+.......|.+|+++ +++||++...
T Consensus 265 ~~~~~I~~~d~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~--------------------------------- 307 (386)
T 3v65_B 265 AKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWH--------------------------------- 307 (386)
T ss_dssp TTTTEEEEECTTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETT---------------------------------
T ss_pred CCCCEEEEEeCCCC---eeEEEEECCCCCceEEEEE-CCEEEEeeCC---------------------------------
Confidence 99999999998752 2233332334579999995 5679999876
Q ss_pred CceEEEEEC-CCCcEEEEEEC
Q 023085 233 GGAHLIHVA-EDGTIIRNLVD 252 (287)
Q Consensus 233 ~~~~v~~~~-~~g~~~~~~~~ 252 (287)
.+.|.+++ ++|+....+..
T Consensus 308 -~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 308 -TKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp -TTEEEEEETTTCCSCEEEEC
T ss_pred -CCeEEEEECCCCcceEEEcc
Confidence 35889998 56776666653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-14 Score=118.57 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=131.6
Q ss_pred CccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecC--------C-------ccccccceEEEcC-CCcEEEE
Q 023085 32 SQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVN--------G-------SKLRFANDVVEAS-DGSLYFT 92 (287)
Q Consensus 32 ~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~--------~-------~~~~~~~~l~~d~-~g~l~v~ 92 (287)
..|. ++++|++|+ +|++...++|++++ .++ ++.+..... + .....|.++++++ +|+||++
T Consensus 19 ~~p~-~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPN-SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCC-CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCce-EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 4577 999999998 88877667899999 455 655532110 0 1124688999996 8999997
Q ss_pred cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----cccccceEEEcc-CCCEEEEEeCC------------
Q 023085 93 VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSR-DEDYVVVCESW------------ 154 (287)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~i~~~~-~~~~l~v~~~~------------ 154 (287)
+.. .+|+++++++++++.+.. .+..|+++++++ +|+ +|+++..
T Consensus 98 d~~------------------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 98 DCY------------------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp ETT------------------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHH
T ss_pred ECC------------------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceeh
Confidence 522 358999988666555432 234689999999 886 9999864
Q ss_pred -----CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 155 -----KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 155 -----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
.++|++++.++.+ ...+... ...|++++++++|+ ||++...
T Consensus 159 ~~~~~~g~v~~~d~~~~~---~~~~~~~-~~~p~gia~~~dg~~lyv~d~~----------------------------- 205 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKE---TTLLLKE-LHVPGGAEVSADSSFVLVAEFL----------------------------- 205 (322)
T ss_dssp HHTCCCEEEEEEETTTTE---EEEEEEE-ESCCCEEEECTTSSEEEEEEGG-----------------------------
T ss_pred cccCCCceEEEEeCCCCE---EEEeccC-CccCcceEECCCCCEEEEEeCC-----------------------------
Confidence 2579999865332 2222211 23689999999986 9999865
Q ss_pred ccCCCceEEEEECCCCc---EEEEEECCCCccccceEEEEEe-CCEEEEEecC----------CCeEEEEeC
Q 023085 229 ITLGGGAHLIHVAEDGT---IIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLT----------SNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~----------~~~i~~~~~ 286 (287)
.+.|.+++.++. ....+....+ +..++.+ +|+||+++.. +..|.+++-
T Consensus 206 -----~~~I~~~~~~~~~~~~~~~~~~~~g-----P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 206 -----SHQIVKYWLEGPKKGTAEVLVKIPN-----PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp -----GTEEEEEESSSTTTTCEEEEEECSS-----EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred -----CCeEEEEECCCCcCCccceEEeCCC-----CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence 258899987652 2233332111 6778877 6899999976 567888763
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=116.25 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=120.4
Q ss_pred CCcEEEEe-cCCeEEEEE-CC----ce-EEEEe-eCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecC
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DG----TW-VNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVN 71 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~----~~-~~~~~-~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~ 71 (287)
++.||+++ .+++|++++ ++ .. +.+.. ....|. ++++|+ .++||+++.. +.|.+++.+| .+.+...
T Consensus 41 ~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-- 117 (316)
T 1ijq_A 41 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-- 117 (316)
T ss_dssp TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--
T ss_pred CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC--
Confidence 56899988 568999998 54 22 22222 224677 999996 6689999765 5688888666 4444321
Q ss_pred CccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEE
Q 023085 72 GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 72 ~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~ 149 (287)
.+..|+++++|+ +|.||+++.. ..+.|++++++....+.+ ...+..|++++++++++.||
T Consensus 118 --~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 118 --NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp --TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred --CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEE
Confidence 245789999996 6789998633 136899999873333333 24577899999999988999
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+++...++|.+++.++.. .+.+... ....|.++++|. ++||++...
T Consensus 180 ~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~~-~~ly~~d~~ 227 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDII 227 (316)
T ss_dssp EEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred EEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEEC-CEEEEEECC
Confidence 999999999999987532 2333321 234699999984 789999876
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-13 Score=112.46 Aligned_cols=226 Identities=14% Similarity=0.123 Sum_probs=151.9
Q ss_pred CCCC-cEEEEec-------CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-c-EEE
Q 023085 2 DKNG-VIYTATR-------DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENF 66 (287)
Q Consensus 2 d~~G-~l~~~~~-------~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~-~~~ 66 (287)
+++| .||+++. ++.|..++ +++..........+. +++++++|+ +|++... ..|..++ .++ . ..+
T Consensus 49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 127 (353)
T 3vgz_A 49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRL 127 (353)
T ss_dssp ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEE
Confidence 4566 6888773 45799999 566555545555677 999999996 8888765 4688898 666 3 333
Q ss_pred eeecCC----ccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEE
Q 023085 67 LSYVNG----SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVA 140 (287)
Q Consensus 67 ~~~~~~----~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~ 140 (287)
...... .....|.+++++++|. +|+++.. ..+.|+.+|+.+++...... ....+.+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 128 VLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp ESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred ecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 221110 0112478899999886 7775311 24679999998887665444 445688999
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec-c--CCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHH
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-N--LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH 216 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~ 216 (287)
++|+++.+|+++. .+.|..+|....+.. ..+.. . ....+.+++++++|+ +|++...
T Consensus 192 ~s~dg~~l~~~~~-~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------- 251 (353)
T 3vgz_A 192 LDSEGKRLYTTNA-DGELITIDTADNKIL--SRKKLLDDGKEHFFINISLDTARQRAFITDSK----------------- 251 (353)
T ss_dssp EETTTTEEEEECT-TSEEEEEETTTTEEE--EEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----------------
T ss_pred ECCCCCEEEEEcC-CCeEEEEECCCCeEE--EEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----------------
Confidence 9999999999875 678999997543211 11111 0 123456789999986 7877754
Q ss_pred HHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 217 VLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|..+|.+ ++.+..+..+.. ..+.. +++.||+++...+.|.++|+.
T Consensus 252 -----------------~~~v~~~d~~~~~~~~~~~~~~~------~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 252 -----------------AAEVLVVDTRNGNILAKVAAPES------LAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp -----------------SSEEEEEETTTCCEEEEEECSSC------CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -----------------CCEEEEEECCCCcEEEEEEcCCC------ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 3588889875 667777665321 23444 346799999888999999863
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-13 Score=116.35 Aligned_cols=240 Identities=15% Similarity=0.193 Sum_probs=149.2
Q ss_pred CCCCcEEEEecCCeEEEEE-CCceEEEEee------CCccccCeEECCC----CcEEEEeCC--------CceEEEc-cC
Q 023085 2 DKNGVIYTATRDGWIKRLQ-DGTWVNWKFI------DSQTLVGLTSTKE----GHLIICDNA--------NGLHKVS-ED 61 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~~~~~~~~~~------~~~~~~~i~~d~d----g~l~v~~~~--------~gi~~~~-~~ 61 (287)
+++|+||++...|+|.+++ +++ +.+... ...+. +|+++++ |+||++... ..|.+++ ..
T Consensus 37 ~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 37 LGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDG 114 (354)
T ss_dssp EETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECS
T ss_pred cCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECC
Confidence 5789999999889999998 666 444321 23467 8999997 799999753 4688888 32
Q ss_pred C---c---EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe---------e
Q 023085 62 G---V---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---------T 126 (287)
Q Consensus 62 g---~---~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~ 126 (287)
+ + +.+.........+.++.|+++++|.||++....-. .... . ......+.|+|++++ ++ .
T Consensus 115 ~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~--~~~~-~-d~~~~~G~I~ri~~d-G~~p~~npf~~~ 189 (354)
T 3a9g_A 115 STFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD--PRLA-Q-DLSSLAGKILRVDEE-GRPPADNPFPNS 189 (354)
T ss_dssp SSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC--GGGG-T-CTTCCSSEEEEECTT-SCCCTTSSSTTC
T ss_pred CCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC--Cccc-c-CCCCCCeEEEEEcCC-CCCCCCCCCCCC
Confidence 2 2 12222111223456889999999999998533100 0000 0 011234689999987 43 3
Q ss_pred EEeeccccccceEEEccCCCEEEEEeCCCCE---EEEEEecCCCCc-----------ce-eEEec--cCCCCCcceee--
Q 023085 127 TLVADGFYFANGVALSRDEDYVVVCESWKFR---CRKYWLKGERKG-----------KL-ETFAE--NLPGAPDNINL-- 187 (287)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~---l~~~~~~~~~~~-----------~~-~~~~~--~~~~~~~~i~~-- 187 (287)
+.+...+..|.+++++++...||+++...+. |.++.. +...+ .. ..... .....|.++++
T Consensus 190 ~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~ 268 (354)
T 3a9g_A 190 PIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVH 268 (354)
T ss_dssp CEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECC
T ss_pred cEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEEC
Confidence 4455667889999999954459999986654 444432 11100 00 01110 11235888888
Q ss_pred -----CCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--CcEE--EEEECCCCccc
Q 023085 188 -----APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GTII--RNLVDPTGQLM 258 (287)
Q Consensus 188 -----d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~~--~~~~~~~~~~~ 258 (287)
+.+|++|++... .+.|.+++.+ ++.. ..+-. +. .
T Consensus 269 g~~fp~~~G~l~v~~~~----------------------------------~~~v~~~~~~~~g~~~~~~~~~~--~~-~ 311 (354)
T 3a9g_A 269 GDMFPGLRGWLLIACLR----------------------------------GSMLAAVNFGDNMEVRKISTFFK--NV-F 311 (354)
T ss_dssp SSSCGGGTTEEEEEETT----------------------------------TTEEEEEEECGGGCEEEEEEECT--TT-S
T ss_pred CCCCcccCCcEEEEEcC----------------------------------CCEEEEEEECCCCcccceeeecc--CC-C
Confidence 468899999876 3578888765 3332 22221 11 3
Q ss_pred cceEEEEEe-CCEEEEEecC-CC---------eEEEEeC
Q 023085 259 SFVTSGLQV-DNHLYVISLT-SN---------FIGKVQL 286 (287)
Q Consensus 259 ~~~~~~~~~-~g~l~i~~~~-~~---------~i~~~~~ 286 (287)
..+..+.++ +|.|||++.. .+ +|.++..
T Consensus 312 ~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~ 350 (354)
T 3a9g_A 312 GRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVS 350 (354)
T ss_dssp CCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred CCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence 457888886 7999999974 32 8888753
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=134.83 Aligned_cols=221 Identities=9% Similarity=0.105 Sum_probs=151.3
Q ss_pred CcEEEEecCCeEEEEE-C-CceEEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC------cEEEeeecCCcc
Q 023085 5 GVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLSYVNGSK 74 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g------~~~~~~~~~~~~ 74 (287)
..|+++. ...|.+++ + .....+......|. ++++++ .++||+++.. +.|++++.++ ...+. ...
T Consensus 378 ~~ll~~~-~~~I~~id~~~~~~~~~~~~~~~p~-gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~ 451 (699)
T 1n7d_A 378 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRD 451 (699)
T ss_dssp CCBCCCC-TTC-CEECTTSCCEECCSCCCTTCC-CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC----CSC
T ss_pred eeEEecC-ccceEEEeCCCCcceeeeccCcceE-EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE----eCC
Confidence 4556654 35688887 3 33443434445677 999997 5689999765 5688888332 11111 112
Q ss_pred ccccceEEEc-CCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|.+|+++ ..++||+++.. .+.|.+++++....+.+. ..+..|++++++|+++.|||++
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td 514 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD 514 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred CCCcceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence 3568899999 46789997533 457899988754444443 3467899999999887899999
Q ss_pred CCC-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc
Q 023085 153 SWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 230 (287)
Q Consensus 153 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
... ++|+++++++.. ...+.......|++|++|++ ++||++...
T Consensus 515 ~~~~~~I~~~~~dG~~---~~~l~~~~l~~PnGlavd~~~~~LY~aD~~------------------------------- 560 (699)
T 1n7d_A 515 WGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK------------------------------- 560 (699)
T ss_dssp CSSSCCEEBCCSSSCC---CCEESCSSCSSCCCEEECTTTCCEEEEETT-------------------------------
T ss_pred cCCCCeEEEEeCCCCC---eeEEEeCCCCCccEEEEeccCCEEEEEecC-------------------------------
Confidence 765 789998876532 22232222347999999974 789999976
Q ss_pred CCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 231 LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 231 ~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
...|.+++.+|...+.+.... ..+..+.++.+++++||++...+++|.+++.
T Consensus 561 ---~~~I~~~d~dG~~~~~~~~~~-~~~~~P~glavd~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 561 ---LHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp ---TTEEEEECSSSSCCEEECCCS-SSCSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred ---CCeEEEEccCCCceEEEEecC-CcCCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence 358999999887666654322 2245677888888899999999999999874
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-12 Score=111.02 Aligned_cols=229 Identities=12% Similarity=0.105 Sum_probs=142.1
Q ss_pred CCCCcEEEEec---CCeEEEEE--CCceEEEEe---eCCccccCeEECCCCc-EEEEeCC-CceEEEc--cCC-cEEEee
Q 023085 2 DKNGVIYTATR---DGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLS 68 (287)
Q Consensus 2 d~~G~l~~~~~---~g~i~~~~--~~~~~~~~~---~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~--~~g-~~~~~~ 68 (287)
+++|.||+++. ++.|..|+ +++.+.... ....|. ++++++||+ ||++... ..+..++ .+| .+.+..
T Consensus 48 spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~ 126 (347)
T 3hfq_A 48 SAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT 126 (347)
T ss_dssp CTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred ccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce
Confidence 57888888875 47888888 555544433 355677 899999997 7777744 3466666 455 444432
Q ss_pred ec-CCc------cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CCeeEEee----cccccc
Q 023085 69 YV-NGS------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVA----DGFYFA 136 (287)
Q Consensus 69 ~~-~~~------~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~----~~~~~~ 136 (287)
.. .+. ....+..++++++|++|+++.. .+.|+.++.. ++++.... .....|
T Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 127 VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp EECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEECCTTCCE
T ss_pred eecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeeeEEcCCCCCC
Confidence 21 111 1234778999999998886533 3456666654 45544321 223467
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecC--CCCcceeEEeccCC-----CCCcceeeCCCCC-EEEEEeccchhHHHHh
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENLP-----GAPDNINLAPDGT-FWIAIIKLDARRMKIL 208 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~-----~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~ 208 (287)
..++++|||+.+|+++...+.+..|+++. .+............ ..|.+++++++|+ ||++...
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~--------- 260 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG--------- 260 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET---------
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC---------
Confidence 78999999999999988888998888764 22111112211111 2366799999997 7777764
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEE--CCCCcE--EEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEE
Q 023085 209 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV--AEDGTI--IRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIG 282 (287)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~g~~--~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~ 282 (287)
.+.|..+ +++|.. +..+... + ..+..+.++ +..||+++..++.|.
T Consensus 261 -------------------------~~~v~v~~~~~~g~~~~~~~~~~~-~---~~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 261 -------------------------YNTLAVFAVTADGHLTLIQQISTE-G---DFPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp -------------------------TTEEEEEEECGGGCEEEEEEEECS-S---SCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred -------------------------CCEEEEEEECCCCcEEEeEEEecC-C---CCcCeEEECCCCCEEEEEEcCCCcEE
Confidence 1244444 444432 3333321 2 235566664 456999999888898
Q ss_pred EEeC
Q 023085 283 KVQL 286 (287)
Q Consensus 283 ~~~~ 286 (287)
++++
T Consensus 312 v~~~ 315 (347)
T 3hfq_A 312 LYAR 315 (347)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8855
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-13 Score=111.64 Aligned_cols=168 Identities=13% Similarity=0.182 Sum_probs=116.5
Q ss_pred CCCCCcEEEEec-CCeEEEEE--CCceEEEEee-----CCccccCeEECCCCcEEEEeC------------------CCc
Q 023085 1 MDKNGVIYTATR-DGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDN------------------ANG 54 (287)
Q Consensus 1 ~d~~G~l~~~~~-~g~i~~~~--~~~~~~~~~~-----~~~~~~~i~~d~dg~l~v~~~------------------~~g 54 (287)
++++|.||+++. +++|.+++ +++++.+... ...+. +++++++|++|+++. ..+
T Consensus 76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 76 LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 368899999985 48999999 6777655432 23456 899999999999743 237
Q ss_pred eEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CCee---E-E
Q 023085 55 LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNIT---T-L 128 (287)
Q Consensus 55 i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~-~ 128 (287)
|++++.++ .+.+.. ....|++++++++|.+++++. ..+.|++++.. ++++ . .
T Consensus 155 l~~~~~~g~~~~~~~-----~~~~~~gi~~s~dg~~lv~~~-----------------~~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 155 VFRLAPDGTLSAPIR-----DRVKPNGLAFLPSGNLLVSDT-----------------GDNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp EEEECTTSCEEEEEC-----CCSSEEEEEECTTSCEEEEET-----------------TTTEEEEEEECSSSCEEEEEEE
T ss_pred EEEECCCCCEEEeec-----CCCCCccEEECCCCCEEEEeC-----------------CCCeEEEEEECCCCcCcCCCeE
Confidence 99998557 655432 134678999999998777643 24678888764 4554 1 2
Q ss_pred eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC-CCC-CEEEEEec
Q 023085 129 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIK 199 (287)
Q Consensus 129 ~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G-~lwv~~~~ 199 (287)
+......|.+++++++|+ +|++. .++|.+|+.++. ....+. ...+ |.+++++ +++ .||+++..
T Consensus 213 ~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~---~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGD---ELGRVL-TPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp ECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSC---EEEEEE-CSSC-CCEEEEESTTSCEEEEEETT
T ss_pred eeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCC---EEEEEE-CCCC-ceeEEEECCCCCEEEEEcCC
Confidence 212334678999999997 89988 678999997532 122222 2223 8889884 665 59999876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-12 Score=108.63 Aligned_cols=229 Identities=9% Similarity=0.064 Sum_probs=145.1
Q ss_pred CCCCCc-EEEEec-CCeEEEEE--CCce-EEEEeeCCccccC-eEECCCCcEEEEeCCC----ceEEEc-cCC-cEEEee
Q 023085 1 MDKNGV-IYTATR-DGWIKRLQ--DGTW-VNWKFIDSQTLVG-LTSTKEGHLIICDNAN----GLHKVS-EDG-VENFLS 68 (287)
Q Consensus 1 ~d~~G~-l~~~~~-~g~i~~~~--~~~~-~~~~~~~~~~~~~-i~~d~dg~l~v~~~~~----gi~~~~-~~g-~~~~~~ 68 (287)
++++|. ||+++. ++.|+.++ +++. .........|. . ++++++|+.+++.... .|..++ .++ ......
T Consensus 47 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 47 ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE
Confidence 357785 888875 78999999 5655 44444555666 6 9999999754454343 588888 566 333222
Q ss_pred ecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCC-ceEEEEeCCCCeeE----EeeccccccceEEEc
Q 023085 69 YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPH-GQLLKYDPSSNITT----LVADGFYFANGVALS 142 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~----~~~~~~~~~~~i~~~ 142 (287)
. ...|.+++++++|+ +|+++.. ... -.+|.++.. +.+. ........|.+++++
T Consensus 126 ~-----~~~~~~~~~spdg~~l~~~~~~---------------~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~s 184 (331)
T 3u4y_A 126 I-----PYDAVGIAISPNGNGLILIDRS---------------SANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFT 184 (331)
T ss_dssp C-----CTTEEEEEECTTSSCEEEEEET---------------TTTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEEEC
T ss_pred C-----CCCccceEECCCCCEEEEEecC---------------CCceEEEEEECCC-CcEeecCCccccCCCCccceEEC
Confidence 1 13568999999996 8886422 111 234555433 3321 112334567899999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCCCcc-eeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHh
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAA 220 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (287)
|+++.+|++....+.|..|+++..+... ...+ .....|.+++++++|+ ||++...
T Consensus 185 pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~--------------------- 241 (331)
T 3u4y_A 185 PDGNFAFVANLIGNSIGILETQNPENITLLNAV--GTNNLPGTIVVSRDGSTVYVLTES--------------------- 241 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECSSCCCCEEECTTSSEEEEECSS---------------------
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcccceeeec--cCCCCCceEEECCCCCEEEEEEcC---------------------
Confidence 9999999999888999999986543211 2222 1334688999999998 7777654
Q ss_pred CCccccccccCCCceEEEEECCCCcEE---EEEECC---CCccccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 221 YPKLFSQFITLGGGAHLIHVAEDGTII---RNLVDP---TGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~g~~~---~~~~~~---~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|..++.+...+ ..+... ..........+.. ++..||+++..++.|.+++++
T Consensus 242 -------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 242 -------------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp -------------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred -------------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 35788888764433 222211 0111111122344 457899999999999999874
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-13 Score=118.88 Aligned_cols=175 Identities=16% Similarity=0.237 Sum_probs=118.2
Q ss_pred CCCC-cEEEEecCC--eEEEEE-CCceE--EEE---e-eCCccccCeEECC-CCcEEEEeCCCceEEEc-cCC-cEEEee
Q 023085 2 DKNG-VIYTATRDG--WIKRLQ-DGTWV--NWK---F-IDSQTLVGLTSTK-EGHLIICDNANGLHKVS-EDG-VENFLS 68 (287)
Q Consensus 2 d~~G-~l~~~~~~g--~i~~~~-~~~~~--~~~---~-~~~~~~~~i~~d~-dg~l~v~~~~~gi~~~~-~~g-~~~~~~ 68 (287)
+++| .||+++..+ .|++++ .+.+. ... . ....|. ++++++ +|+||+++..+.|++++ .++ ...+..
T Consensus 179 ~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 179 TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE
T ss_pred ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec
Confidence 4566 578877544 899999 33222 221 1 334677 999999 78999987655699999 445 444421
Q ss_pred e-cCCccccccc-eEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-c------------
Q 023085 69 Y-VNGSKLRFAN-DVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G------------ 132 (287)
Q Consensus 69 ~-~~~~~~~~~~-~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~------------ 132 (287)
. ..+.....|. ++++++ ++.||+++.. .+.|++++++ +.+..+.. .
T Consensus 258 ~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~ 319 (409)
T 3hrp_A 258 LELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPD-GECEWFCGSATQKTVQDGLREE 319 (409)
T ss_dssp CCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTT-CCEEEEEECTTCCSCBCEEGGG
T ss_pred ccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecC-CCEEEEEeCCCCCCcCCCcccc
Confidence 1 1111112345 999999 5899998643 5689999877 44444322 1
Q ss_pred --ccccceEEEccCCCEEEEEeC-CCCEEEEEEecCCCCcceeEEecc--------------CCCCCcceeeCCCCCEEE
Q 023085 133 --FYFANGVALSRDEDYVVVCES-WKFRCRKYWLKGERKGKLETFAEN--------------LPGAPDNINLAPDGTFWI 195 (287)
Q Consensus 133 --~~~~~~i~~~~~~~~l~v~~~-~~~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~i~~d~~G~lwv 195 (287)
+..|++++++++|+ ||+++. .+++|.++++.++. ...+... ....|.++++|++|+||+
T Consensus 320 ~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV 395 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWI 395 (409)
T ss_dssp CBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred cEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence 45699999999998 999999 89999999954322 2222111 123699999999999999
Q ss_pred EEec
Q 023085 196 AIIK 199 (287)
Q Consensus 196 ~~~~ 199 (287)
+...
T Consensus 396 ad~~ 399 (409)
T 3hrp_A 396 AEAW 399 (409)
T ss_dssp EEST
T ss_pred EECC
Confidence 9987
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-12 Score=121.16 Aligned_cols=218 Identities=11% Similarity=0.120 Sum_probs=156.4
Q ss_pred CCcEEEEecCCeEEEEE-CC-ceEEEEee--CCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCccc
Q 023085 4 NGVIYTATRDGWIKRLQ-DG-TWVNWKFI--DSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~-~~~~~~~~--~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~ 75 (287)
+..|.++ ....|.+++ ++ ........ ...|. ++++|+ +++||+++.. +.|++++.+| .+.+... .+
T Consensus 6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~-~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----g~ 79 (628)
T 4a0p_A 6 EAFLLFS-RRADIRRISLETNNNNVAIPLTGVKEAS-ALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----GL 79 (628)
T ss_dssp CCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SC
T ss_pred CcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceE-EEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----CC
Confidence 3456676 567899998 43 22222221 23567 899996 5689999866 4588888555 5554322 23
Q ss_pred cccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..|.+|++|. .++||++|.. .+.|.+++++....+.+ ...+..|.+|+++|....|||++.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~-----------------~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~ 142 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTG-----------------TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW 142 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC
T ss_pred CCcceEEEEeCCCEEEEEECC-----------------CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC
Confidence 5789999996 5789998644 46899998874433333 356788999999997778999996
Q ss_pred C-CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 154 W-KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 154 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
. ..+|+++++++.. ...+.. ....|.+|++|.+ ++||++...
T Consensus 143 g~~~~I~r~~~dG~~---~~~l~~-~~~~P~GlalD~~~~~LY~aD~~-------------------------------- 186 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSE---RTTLVP-NVGRANGLTIDYAKRRLYWTDLD-------------------------------- 186 (628)
T ss_dssp SSSCEEEEEETTSCS---CEEEEC-SCSSEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred CCCCEEEEEeCCCCc---eEEEEC-CCCCcceEEEccccCEEEEEECC--------------------------------
Confidence 5 6799999987642 223332 2347999999984 789999976
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++.+|...+.+.. . ...+.+++.++++||+++..+++|.+++.
T Consensus 187 --~~~I~~~d~dG~~~~v~~~--~--l~~P~glav~~~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 187 --TNLIESSNMLGLNREVIAD--D--LPHPFGLTQYQDYIYWTDWSRRSIERANK 235 (628)
T ss_dssp --TTEEEEEETTSCSCEEEEE--C--CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred --CCEEEEEcCCCCceEEeec--c--CCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence 3589999988865555442 1 35678888888999999999999999873
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-13 Score=116.86 Aligned_cols=239 Identities=16% Similarity=0.193 Sum_probs=146.6
Q ss_pred CCCCCcEEEEecCCeEEEEECCceEEEEee------CCccccCeEECCC----CcEEEEeCC------CceEEEc-cCC-
Q 023085 1 MDKNGVIYTATRDGWIKRLQDGTWVNWKFI------DSQTLVGLTSTKE----GHLIICDNA------NGLHKVS-EDG- 62 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~~~~~~~~~~~------~~~~~~~i~~d~d----g~l~v~~~~------~gi~~~~-~~g- 62 (287)
++++|+||++...|+|.++++++.+.+... ...|. +|+++++ +.||++... ..|.+++ ..+
T Consensus 38 ~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~ 116 (352)
T 2ism_A 38 FLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGER 116 (352)
T ss_dssp ECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSC
T ss_pred EcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCC
Confidence 368999999998899999986655444322 24567 9999998 789999753 4688888 433
Q ss_pred cE---EEeeecC--CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-------------C
Q 023085 63 VE---NFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-------------N 124 (287)
Q Consensus 63 ~~---~~~~~~~--~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~ 124 (287)
+. .+..... ....+.+.+|+++++|.||+++...-. .... . ......+.|+|++++. .
T Consensus 117 ~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~--~~~~-~-d~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 192 (352)
T 2ism_A 117 GVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE--RELA-Q-DLASLGGKILRLTPEGEPAPGNPFLGRRGA 192 (352)
T ss_dssp EEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC--GGGG-G-CTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred cCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC--Cccc-c-CCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence 32 2222122 123457789999999999998643100 0000 0 0112347899999873 1
Q ss_pred eeEEeeccccccceEEEccCCCEEEEEeCCCCE--------EEEEEecCCCCcc------------eeEEec-cCCCCCc
Q 023085 125 ITTLVADGFYFANGVALSRDEDYVVVCESWKFR--------CRKYWLKGERKGK------------LETFAE-NLPGAPD 183 (287)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~--------l~~~~~~~~~~~~------------~~~~~~-~~~~~~~ 183 (287)
..+.+...+..|.+++++|+...||+++...+. |.++.. +...+- ...... .....|.
T Consensus 193 ~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~ 271 (352)
T 2ism_A 193 RPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPG 271 (352)
T ss_dssp CTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCEE
T ss_pred CccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcCCeEecCCCCCCc
Confidence 233445556789999999954459999987665 444432 111100 001110 1123578
Q ss_pred ceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--CcE-----EEEEECCCCc
Q 023085 184 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GTI-----IRNLVDPTGQ 256 (287)
Q Consensus 184 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~-----~~~~~~~~~~ 256 (287)
++++ .+|++|++... .+.|.+++.+ +.. ...+-. .
T Consensus 272 G~~~-~~G~l~v~~~~----------------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~--~- 313 (352)
T 2ism_A 272 NLAF-FRGDLYVAGLR----------------------------------GQALLRLVLEGERGRWRVLRVETALS--G- 313 (352)
T ss_dssp EEEE-ETTEEEEEETT----------------------------------TTEEEEEEEEEETTEEEEEEEEEEEE--S-
T ss_pred ceEE-ECCEEEEEECC----------------------------------CCEEEEEEECCCCcceeecchheecc--c-
Confidence 8998 57899999876 3477777654 221 122221 1
Q ss_pred cccceEEEEEe-CCEEEEEecCCC----------eEEEE
Q 023085 257 LMSFVTSGLQV-DNHLYVISLTSN----------FIGKV 284 (287)
Q Consensus 257 ~~~~~~~~~~~-~g~l~i~~~~~~----------~i~~~ 284 (287)
...+..+.++ +|.|||++...+ +|.++
T Consensus 314 -~~rp~~v~~~pdG~lyv~~~~~~g~g~~~~~~~~i~ri 351 (352)
T 2ism_A 314 -FGRLREVQVGPDGALYVTTSNRDGRGQVRPGDDRVLRL 351 (352)
T ss_dssp -SCCEEEEEECTTSCEEEEECSTTTTSCCCTTCSCEEEE
T ss_pred -CCCeeEEEECCCCcEEEEEeCCCCCCCCCCCCCEEEEe
Confidence 2357888886 799999997632 78775
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=116.49 Aligned_cols=172 Identities=14% Similarity=0.172 Sum_probs=104.7
Q ss_pred CCcEEEEeCCCceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeC
Q 023085 43 EGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 121 (287)
Q Consensus 43 dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 121 (287)
+|+||+++...++++++..| ..-.... . ...+..++.+++|.+|++ +..++|+++++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~-~---~~~~~~~~~~~~g~l~vg------------------t~~~~l~~~d~ 164 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKT-K---KAIYATPIVSEDGTIYVG------------------SNDNYLYAINP 164 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEEC-S---SCCCSCCEECTTSCEEEE------------------CTTSEEEEECT
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcC-C---CceeeeeEEcCCCEEEEE------------------cCCCEEEEECC
Confidence 55666665445566666334 2111111 0 112344556666677774 33468999998
Q ss_pred CCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEecc
Q 023085 122 SSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 122 ~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
+ ++... +.........+++++++. +|++. +.|++++.++. ....+. ........+++|++|+||+++..
T Consensus 165 ~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~d~~g~---~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~- 234 (330)
T 3hxj_A 165 D-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAINPDGT---EKWNFY-AGYWTVTRPAISEDGTIYVTSLD- 234 (330)
T ss_dssp T-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEECTTSC---EEEEEC-CSSCCCSCCEECTTSCEEEEETT-
T ss_pred C-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEECCCCc---EEEEEc-cCCcceeceEECCCCeEEEEcCC-
Confidence 8 65432 222223345567777776 88886 67999983221 111111 12234677899999999999975
Q ss_pred chhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCC
Q 023085 201 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN 279 (287)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~ 279 (287)
++|++++++++.++.+..... ....+..+ +++||+++.. +
T Consensus 235 ----------------------------------~gl~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~v~t~~-g 275 (330)
T 3hxj_A 235 ----------------------------------GHLYAINPDGTEKWRFKTGKR----IESSPVIGNTDTIYFGSYD-G 275 (330)
T ss_dssp ----------------------------------TEEEEECTTSCEEEEEECSSC----CCSCCEECTTSCEEEECTT-C
T ss_pred ----------------------------------CeEEEECCCCCEeEEeeCCCC----ccccceEcCCCeEEEecCC-C
Confidence 489999999999888875432 22344555 7999999875 3
Q ss_pred eEEEEe
Q 023085 280 FIGKVQ 285 (287)
Q Consensus 280 ~i~~~~ 285 (287)
.|.+++
T Consensus 276 gl~~~d 281 (330)
T 3hxj_A 276 HLYAIN 281 (330)
T ss_dssp EEEEEC
T ss_pred CEEEEC
Confidence 566665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-14 Score=123.38 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=134.9
Q ss_pred ccccCeEECCC---CcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeee
Q 023085 33 QTLVGLTSTKE---GHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 33 ~~~~~i~~d~d---g~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~ 107 (287)
.|. ++++|++ |+||+++..+.|.+++ .++ ++.+.. .+..|++|+++++|+||+++...
T Consensus 140 ~P~-gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----~~~~P~giavd~dG~lyVad~~~----------- 202 (433)
T 4hw6_A 140 NIW-RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-----NIGQCADVNFTLNGDMVVVDDQS----------- 202 (433)
T ss_dssp CCC-EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-----CCSCEEEEEECTTCCEEEEECCS-----------
T ss_pred CCc-eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-----CCCCccEEEECCCCCEEEEcCCC-----------
Confidence 467 8999985 8999998767899999 577 666533 34679999999999999997541
Q ss_pred eccCCCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 108 LEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
......++.++...+.. ......+..|++++++++...||+++...++|++++.++..... ..+.......+.+++
T Consensus 203 --~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~~~~~~ia 279 (433)
T 4hw6_A 203 --SDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTKGSNFHIV 279 (433)
T ss_dssp --CTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCCSSCEEEE
T ss_pred --CcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCCCCcccEE
Confidence 01123466666542221 11222467899999999544599999988999999976333211 112111223456799
Q ss_pred eCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC--cEE---EEEECC-------
Q 023085 187 LAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG--TII---RNLVDP------- 253 (287)
Q Consensus 187 ~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--~~~---~~~~~~------- 253 (287)
+|++|+ ||++... ...|.+++.++ ..+ ..+...
T Consensus 280 ~dpdG~~LYvad~~----------------------------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~ 325 (433)
T 4hw6_A 280 WHPTGDWAYIIYNG----------------------------------KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWV 325 (433)
T ss_dssp ECTTSSEEEEEETT----------------------------------TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCB
T ss_pred EeCCCCEEEEEeCC----------------------------------CCEEEEEeCCCCCcccCcEEEEEecCCCCccC
Confidence 999997 9999976 24788876542 211 122111
Q ss_pred CC----ccccceEEEEE---------e-CCEEEEEecCCCeEEEEeC
Q 023085 254 TG----QLMSFVTSGLQ---------V-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 254 ~~----~~~~~~~~~~~---------~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+| ..++.+..++. + +|+|||+...+++|.+++-
T Consensus 326 dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 326 DGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp CEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 11 13566888887 5 6899999999999999874
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-13 Score=112.49 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=130.9
Q ss_pred CccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeee
Q 023085 32 SQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 108 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~ 108 (287)
..+. +++++++|+||+++.. .+|++++ .++ ...+... ....|.+++++++|++|++....
T Consensus 45 ~~~~-~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~------------ 107 (333)
T 2dg1_A 45 LQLE-GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGD------------ 107 (333)
T ss_dssp CCEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTT------------
T ss_pred cccc-CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCC------------
Confidence 3456 8899999999987544 5799999 556 5554321 12468899999999999975320
Q ss_pred ccCCCceEEEEeCCCCeeEEeec---cccccceEEEccCCCEEEEEeCC------CCEEEEEEecCCCCcceeEEeccCC
Q 023085 109 EGKPHGQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCESW------KFRCRKYWLKGERKGKLETFAENLP 179 (287)
Q Consensus 109 ~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~v~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~ 179 (287)
....+.|++++++++++..+.. ....++.++++|+++ +|++... ...|++++.++.+ ...+.. ..
T Consensus 108 -~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~-~~ 181 (333)
T 2dg1_A 108 -FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQ-NI 181 (333)
T ss_dssp -SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEE-EE
T ss_pred -CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCE---EEEeec-CC
Confidence 0012579999988776653322 234578899999997 8888764 3578888865422 222221 11
Q ss_pred CCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CCcEEEEEE-----
Q 023085 180 GAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGTIIRNLV----- 251 (287)
Q Consensus 180 ~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~~~~~~~----- 251 (287)
..|.+++++++|+ ||++... .+.|.+++. +++.+..+.
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~----------------------------------~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETT----------------------------------ANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGG----------------------------------GTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred CcccceEECCCCCEEEEEeCC----------------------------------CCeEEEEEecCCCcCcccccceEEE
Confidence 2478899999996 8998754 247888876 444433221
Q ss_pred CCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 252 DPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
...+ ...+..++++ +|+||+++...+.|.+++.
T Consensus 228 ~~~~--~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 228 YFTG--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp ECCS--SSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ecCC--CCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 1111 1356778876 6999999988889999875
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-13 Score=116.43 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=121.0
Q ss_pred CCCcEEEEe-cCCeEEEEE-CC-----ceEEEEe-eCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeec
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DG-----TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYV 70 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~-----~~~~~~~-~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~ 70 (287)
.++.||+++ .+++|++++ ++ ....+.. ....|. ++++|. .++||+++.. +.|.+++.+| .+.+...
T Consensus 122 ~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~- 199 (400)
T 3p5b_L 122 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE- 199 (400)
T ss_dssp TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-
T ss_pred ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-
Confidence 367899988 568899998 54 2233322 345678 999997 6789999866 4688888666 4444321
Q ss_pred CCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEE
Q 023085 71 NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l 148 (287)
.+..|.+|++|+ .|.||++|.+ ..+.|++++++......+ ...+..|+||+++++++.|
T Consensus 200 ---~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 200 ---NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp ---SSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred ---CCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEE
Confidence 245789999997 6789998643 235799999874333333 3457899999999988899
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCCEEEEEec
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
||+++..++|.++++++.. .+.+... ....|.+++++. ++||++...
T Consensus 261 Y~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~ 309 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDII 309 (400)
T ss_dssp EEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEET-TEEEEEESS
T ss_pred EEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEeC-CEEEEecCC
Confidence 9999999999999987632 2233321 234689999964 468888766
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-13 Score=111.53 Aligned_cols=203 Identities=12% Similarity=0.010 Sum_probs=133.9
Q ss_pred eEEEEeeCCccccCeEECCCCcEEEE--------eCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCC-CcEEEE
Q 023085 24 WVNWKFIDSQTLVGLTSTKEGHLIIC--------DNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD-GSLYFT 92 (287)
Q Consensus 24 ~~~~~~~~~~~~~~i~~d~dg~l~v~--------~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~ 92 (287)
++.+......|. +++++++|+||++ ...++|++++ .++ .+.+...........|.+++++++ |++|++
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 10 FTKVTEDIPGAE-GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp CEEEECCCTTCE-EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred HhhhhccCCCcc-CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 334444445677 8999999999998 4446799999 677 655532100112246889999999 999997
Q ss_pred cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-ec-----cccccceEEEccCCCEEEEEeCCC-----------
Q 023085 93 VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-AD-----GFYFANGVALSRDEDYVVVCESWK----------- 155 (287)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-----~~~~~~~i~~~~~~~~l~v~~~~~----------- 155 (287)
+. ..+|++++++ +++..+ .. ....+++++++++|+ +|+++...
T Consensus 89 ~~------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 89 DM------------------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp ET------------------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTT
T ss_pred EC------------------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccc
Confidence 42 2379999988 777655 32 124578999999987 88888654
Q ss_pred ----CEEEEEEecCCCCcceeEEeccCCCCCcceeeC----CCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 156 ----FRCRKYWLKGERKGKLETFAENLPGAPDNINLA----PDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 156 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d----~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
.+|++++.+ .+ ...+.. ....|.+++++ ++| .||++...
T Consensus 149 ~~~~~~l~~~~~~-g~---~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~--------------------------- 196 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQ---MIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETP--------------------------- 196 (314)
T ss_dssp SSSCEEEEEECTT-SC---EEEEEE-EESSEEEEEEEECTTSCEEEEEEEETT---------------------------
T ss_pred cCCCCeEEEECCC-CC---EEEecc-CCCCcceEEEecccCCCCCEEEEEECC---------------------------
Confidence 578888854 22 222221 11257889998 998 68998764
Q ss_pred ccccCCCceEEEEECCC--CcEE--EEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 227 QFITLGGGAHLIHVAED--GTII--RNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~~--g~~~--~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.++|.+++.+ ++.. ..+..-.+.....+..++.+ +|+||+++..++.|.+++.
T Consensus 197 -------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 197 -------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp -------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred -------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 2478888753 4321 12221111111346777776 6999999988889999875
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=119.12 Aligned_cols=217 Identities=13% Similarity=0.197 Sum_probs=152.5
Q ss_pred EEEEecCCeEEEEE-C-CceEEEEee---CCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCccccc
Q 023085 7 IYTATRDGWIKRLQ-D-GTWVNWKFI---DSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 7 l~~~~~~g~i~~~~-~-~~~~~~~~~---~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~~~ 77 (287)
|.+++ .+.|.++. + ........+ ...+. ++++|+ +++||+++.. ..|++++.+| .+.+... .+..
T Consensus 320 Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~-~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~----~~~~ 393 (619)
T 3s94_A 320 LLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAI-AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA----QIAH 393 (619)
T ss_dssp EEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSC
T ss_pred EEEEc-ccceEEEecCCCccceeEEeccccCccE-EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC----CCCC
Confidence 55553 45677777 2 222222211 23566 888886 6799999865 4688888665 5554321 2468
Q ss_pred cceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
|.+|++|. .++||++|.. .+.|.+.+++....+.+ ...+..|.+|+++|....|||++...
T Consensus 394 p~GlAvD~~~~~lY~tD~~-----------------~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~ 456 (619)
T 3s94_A 394 PDGIAVDWVARNLYWTDTG-----------------TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE 456 (619)
T ss_dssp CCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS
T ss_pred cCceEEecccCcEEEEeCC-----------------CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC
Confidence 89999995 6789998744 46788888774333333 34678899999999877899999764
Q ss_pred -CEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 156 -FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 156 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
.+|.++++++.. ...+....-..|+||++|. +++||++...
T Consensus 457 ~~~I~r~~~dG~~---~~~l~~~~l~~P~GlalD~~~~~LY~aD~~---------------------------------- 499 (619)
T 3s94_A 457 IPKIERAALDGSD---RVVLVNTSLGWPNGLALDYDEGKIYWGDAK---------------------------------- 499 (619)
T ss_dssp SCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETT----------------------------------
T ss_pred CCEEEEEccCCCc---cEEEEeCCCCCCeeeEEcccCCEEEEEECC----------------------------------
Confidence 789999987632 2233333335799999996 6799999876
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++.+|...+.+.. .+ +..+.++...+++||++.....+|.+++.
T Consensus 500 ~~~I~~~~~dG~~~~~~~~-~~--l~~P~glav~~~~ly~tD~~~~~I~~~~k 549 (619)
T 3s94_A 500 TDKIEVMNTDGTGRRVLVE-DK--IPHIFGFTLLGDYVYWTDWQRRSIERVHK 549 (619)
T ss_dssp TTEEEEEESSSCCCEEEEE-CC--CCSSCCEEEETTEEEEECTTSSCEEEEES
T ss_pred CCEEEEEecCCCceEEEec-cC--CCCcEEEEEECCEEEEeecCCCeEEEEEc
Confidence 3589999998876655532 12 34567788888899999999999999874
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=121.03 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=147.1
Q ss_pred EEEEecCCeEEEEE-CCc---eEEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC-c--EEEeeecCCccccc
Q 023085 7 IYTATRDGWIKRLQ-DGT---WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG-V--ENFLSYVNGSKLRF 77 (287)
Q Consensus 7 l~~~~~~g~i~~~~-~~~---~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g-~--~~~~~~~~~~~~~~ 77 (287)
|.++ ....|.+++ ++. ..........|. ++++++ +++||+++.. ..|++++.+| . +.+.. ..+..
T Consensus 12 ~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~-~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~----~~~~~ 85 (619)
T 3s94_A 12 LLYA-NRRDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SGLLS 85 (619)
T ss_dssp EEEE-CSSBEEEECCC---------CBCCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC----SSCSC
T ss_pred EEEe-ccccEEEEeCCCCcceEEEEEcCCCceE-EEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe----CCCCC
Confidence 3444 456788888 443 222233345677 899986 6689999876 4588888655 2 33321 12457
Q ss_pred cceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCC-
Q 023085 78 ANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW- 154 (287)
Q Consensus 78 ~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~- 154 (287)
|.+|++|. .++||++|.. .+.|.+++++....+.+. ..+..|.+|+++|.++.|||++..
T Consensus 86 P~GlAvD~~~~~ly~~d~~-----------------~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~ 148 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE 148 (619)
T ss_dssp EEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSS
T ss_pred cCeEEEEecCCEEEEEeCC-----------------CCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCC
Confidence 99999998 5789998643 568999998744333443 567889999999988889999965
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
..+|+++++++.. ...+.......|.+|++|. +++||++...
T Consensus 149 ~~~I~r~~~dG~~---~~~l~~~~~~~P~Glald~~~~~LY~aD~~---------------------------------- 191 (619)
T 3s94_A 149 VPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAK---------------------------------- 191 (619)
T ss_dssp SCEEEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEETT----------------------------------
T ss_pred CCEEEEEECCCCc---eEEEEeCCCCCCcEEEEEccCCEEEEEeCC----------------------------------
Confidence 4689999987632 2233322334799999997 5789999876
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++.+|...+.+.. + ....+.++...+++||++....++|.+++.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~--~-~~~~P~gi~~~~~~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVK--G-SLPHPFALTLFEDILYWTDWSTHSILACNK 241 (619)
T ss_dssp TCCEEEESSSCCEEC------------CCCEEESSSEEEEECTTTCSEEEEES
T ss_pred CCeEEEecCCCCccEEEEe--C-CCCCceEEEEeCCEEEEecCCCCEEEEEEC
Confidence 3589999999877666542 1 134567788787899999999999999874
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-11 Score=103.85 Aligned_cols=223 Identities=12% Similarity=0.076 Sum_probs=148.2
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-c-EEEeeecCCccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~-~~~~~~~~~~~~ 75 (287)
.+.+|++. .++.|..++ +++..........+. .++++++|+ +|++... ..|++++ .++ . ...... .
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~ 82 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-----G 82 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-----C
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-----C
Confidence 34677766 678899999 566655444444455 889999996 8888763 5689999 666 5 333222 1
Q ss_pred cccce-EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFAND-VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~-l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..|.. ++++++|..+++... ....+.|+.+|..+++..........+++++++|+|+.+|+++..
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEET
T ss_pred CCCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecC
Confidence 34556 899999985544211 001127999999888765554445567899999999989999877
Q ss_pred CCE-EEEEEecCC-CCcce-eEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc
Q 023085 155 KFR-CRKYWLKGE-RKGKL-ETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 230 (287)
Q Consensus 155 ~~~-l~~~~~~~~-~~~~~-~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
.+. +..|+++.. ..... .... .....|.+++++++|+ +|++...
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~------------------------------- 196 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLI------------------------------- 196 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETT-------------------------------
T ss_pred CCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCC-------------------------------
Confidence 677 888887632 11111 1111 2234588999999997 8888765
Q ss_pred CCCceEEEEECCC-CcE---EEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 231 LGGGAHLIHVAED-GTI---IRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 231 ~~~~~~v~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++. +..+... ..+..+... +..||+++...+.|.++++
T Consensus 197 ---~~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 197 ---GNSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp ---TTEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred ---CCeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 2467778765 555 5555532 234555554 4559999888888988886
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=119.87 Aligned_cols=171 Identities=13% Similarity=0.077 Sum_probs=127.5
Q ss_pred CCCcEEEEe-cCCeEEEEE-CCc-eEEEEeeC-CccccCeEECCC-CcEEEEeCC-CceEEEccCC--cEEEeeecCCcc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DGT-WVNWKFID-SQTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~~-~~~~~~~~-~~~~~~i~~d~d-g~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
.+|.||+++ .+++|.+++ +|. .+.+.... ..|. ++++|.. ++||+++.. +.|.+++.+| .+.+.. ..
T Consensus 47 ~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~----~~ 121 (628)
T 4a0p_A 47 TDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW----KD 121 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC----SS
T ss_pred CCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe----CC
Confidence 357899887 678999998 553 33333332 4688 9999965 689999876 4588888666 444432 23
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
+..|.+|++|+ +|.||++|.+ ....|++++++......+...+..|+|++++++++.|||++.
T Consensus 122 l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 122 LDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred CCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEEC
Confidence 46799999996 7899998743 246899999885555556667889999999999889999999
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..++|.++++++... +.+. .....|.+++++. ++||++...
T Consensus 186 ~~~~I~~~d~dG~~~---~v~~-~~l~~P~glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR---EVIA-DDLPHPFGLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp TTTEEEEEETTSCSC---EEEE-ECCSCEEEEEEET-TEEEEEETT
T ss_pred CCCEEEEEcCCCCce---EEee-ccCCCceEEEEEC-CEEEEecCC
Confidence 999999999876322 2333 2334699999986 689999975
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-13 Score=116.75 Aligned_cols=198 Identities=11% Similarity=0.073 Sum_probs=133.6
Q ss_pred ccccCeEECC--CCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeee
Q 023085 33 QTLVGLTSTK--EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 33 ~~~~~i~~d~--dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~ 107 (287)
.|. ++++|+ +|+||+++..+.|.+++ ..+ ++.+.. ....|.+|+++++|. ||+++...
T Consensus 138 ~P~-~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----~~~~P~~ia~d~~G~~lyvad~~~----------- 200 (430)
T 3tc9_A 138 GAV-WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----GLSKVRTICWTHEADSMIITNDQN----------- 200 (430)
T ss_dssp CCC-EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----CCSCEEEEEECTTSSEEEEEECCS-----------
T ss_pred CCC-EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcceEEEeCCCCEEEEEeCCC-----------
Confidence 567 899996 58999998766799999 455 666543 245789999999997 99987541
Q ss_pred eccCCCceEEEEeCCCCeeE--EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcce
Q 023085 108 LEGKPHGQLLKYDPSSNITT--LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI 185 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (287)
......++.++.+ +.+. .....+..|++++++|++..||+++...++|++++.++.... ..........|.++
T Consensus 201 --~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~~~P~gi 275 (430)
T 3tc9_A 201 --NNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDSGWEFHI 275 (430)
T ss_dssp --CTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSSSCCEEE
T ss_pred --CcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCCCcceeE
Confidence 0112346666654 3222 122246789999999955559999999999999997643211 11211122469999
Q ss_pred eeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc--EE---EEEECC------
Q 023085 186 NLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT--II---RNLVDP------ 253 (287)
Q Consensus 186 ~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--~~---~~~~~~------ 253 (287)
++|++|+ ||++... ...|.+++.++. .+ ..+...
T Consensus 276 a~~pdG~~lyv~d~~----------------------------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~ 321 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVN----------------------------------QHYILRSDYDWKTKRLTTPYIVCGQQGAKDW 321 (430)
T ss_dssp EECTTSSEEEEEETT----------------------------------TTEEEEEEEETTTTEECCCEEEEECTTCBCC
T ss_pred EEcCCCCEEEEEECC----------------------------------CCEEEEEeCCcccccccceEEEeccCCCCCC
Confidence 9999998 9999876 357888876642 21 122211
Q ss_pred -CC----ccccceE-EEEEe---------CCEEEEEecCCCeEEEEeC
Q 023085 254 -TG----QLMSFVT-SGLQV---------DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 254 -~~----~~~~~~~-~~~~~---------~g~l~i~~~~~~~i~~~~~ 286 (287)
++ ..++.+. .++.+ +++||++...+++|.+++-
T Consensus 322 ~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~ 369 (430)
T 3tc9_A 322 VDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP 369 (430)
T ss_dssp BCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence 11 1245566 56653 4799999999999999863
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-11 Score=104.71 Aligned_cols=229 Identities=14% Similarity=0.069 Sum_probs=137.1
Q ss_pred cEEEEec----CCeEEEEE----CCceEEEE--eeCCccccCeEECCCCcEEEEeCC---CceEEEc-cCC-cEEEeeec
Q 023085 6 VIYTATR----DGWIKRLQ----DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG-VENFLSYV 70 (287)
Q Consensus 6 ~l~~~~~----~g~i~~~~----~~~~~~~~--~~~~~~~~~i~~d~dg~l~v~~~~---~gi~~~~-~~g-~~~~~~~~ 70 (287)
.+|+|+. +.+|+.|. +++.+... .....|. .+++++||+||++... ..|+.++ .++ .+.+....
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~-~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPT-YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCC-CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcc-eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 5899973 34555554 46655432 3345677 9999999998888642 4688888 666 55543311
Q ss_pred CCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CCeeEEee---cc---------cccc
Q 023085 71 NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVA---DG---------FYFA 136 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~---~~---------~~~~ 136 (287)
.....|..++++++|+ ||+++. ..+.+..++.. ++....+. .. ...+
T Consensus 83 --~~~~~p~~~a~spdg~~l~~~~~-----------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~ 143 (347)
T 3hfq_A 83 --APGTPPAYVAVDEARQLVYSANY-----------------HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI 143 (347)
T ss_dssp --EESCCCSEEEEETTTTEEEEEET-----------------TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred --cCCCCCEEEEECCCCCEEEEEeC-----------------CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence 1134688999999997 666532 13444444432 24433321 11 1235
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEec-CCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhH
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLI 214 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~ 214 (287)
+.++++|+++ +|+++...+.|..|+++ ++++.....+.......|..++++++|+ +|++....
T Consensus 144 ~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-------------- 208 (347)
T 3hfq_A 144 HYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-------------- 208 (347)
T ss_dssp EEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--------------
T ss_pred eEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC--------------
Confidence 6799999999 99999888899999987 3222222222212223578899999998 77766541
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCC-CcE--EEEEEC-CCCc-cccceEEEEEe-C-CEEEEEecCCCeEEEEeCC
Q 023085 215 KHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI--IRNLVD-PTGQ-LMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~--~~~~~~-~~~~-~~~~~~~~~~~-~-g~l~i~~~~~~~i~~~~~~ 287 (287)
....++.++.+ ++. +..+.. +.+. ....+..+..+ + ..||+++...+.|.+++++
T Consensus 209 ------------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 209 ------------------SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp ------------------TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred ------------------CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 11234444542 332 222222 1110 11346666665 4 4699998888899988863
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-12 Score=107.99 Aligned_cols=177 Identities=11% Similarity=0.105 Sum_probs=115.5
Q ss_pred CCCcEEEEe-cCCeEEEEE-C-CceEEEEeeCC---------ccccCeEE---CCCCcEEEEeC--------------CC
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-D-GTWVNWKFIDS---------QTLVGLTS---TKEGHLIICDN--------------AN 53 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~-~~~~~~~~~~~---------~~~~~i~~---d~dg~l~v~~~--------------~~ 53 (287)
++|.+|+++ ..+.|.+++ + +..+.. ..+. .+. ++.+ |++|+||++.. ..
T Consensus 23 ~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~ 100 (334)
T 2p9w_A 23 TRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGAS 100 (334)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCC
T ss_pred CCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceee-EEEEeccCCCCcEEEEEcccccccccccccCCCC
Confidence 468999999 789999999 4 555444 2221 235 8999 79999999532 24
Q ss_pred ceEEEc-c---CC-cEEEeeecC---------CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC-ceEEE
Q 023085 54 GLHKVS-E---DG-VENFLSYVN---------GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH-GQLLK 118 (287)
Q Consensus 54 gi~~~~-~---~g-~~~~~~~~~---------~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 118 (287)
.++++| . ++ ......... +.....+++|++|++|++||+++. . +.|++
T Consensus 101 ~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-----------------~~~~I~r 163 (334)
T 2p9w_A 101 SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-----------------GMPAIAR 163 (334)
T ss_dssp EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-----------------SSCEEEE
T ss_pred EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-----------------CCCeEEE
Confidence 599999 6 46 333322110 112245899999999999998533 3 67999
Q ss_pred EeCCCCeeEEeec------cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEe-c--cCCCCCcce-eeC
Q 023085 119 YDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-E--NLPGAPDNI-NLA 188 (287)
Q Consensus 119 ~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~i-~~d 188 (287)
++++......... ....++||++.|+++.|++.++ .++|++||+..+.......-. . .....+++| ...
T Consensus 164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVP 242 (334)
T ss_dssp ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEE
T ss_pred EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccc
Confidence 9998443433211 1234679999999999999998 899999998743110011100 0 012247885 666
Q ss_pred CCCCE-EEEEec
Q 023085 189 PDGTF-WIAIIK 199 (287)
Q Consensus 189 ~~G~l-wv~~~~ 199 (287)
.+|++ +|+...
T Consensus 243 ~~G~vllV~~~~ 254 (334)
T 2p9w_A 243 VGNESVLVGARA 254 (334)
T ss_dssp ETTEEEEEEEET
T ss_pred cCCEEEEEEcCC
Confidence 78987 555543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-11 Score=103.01 Aligned_cols=213 Identities=13% Similarity=0.159 Sum_probs=143.8
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC--ccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~--~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~~ 77 (287)
+..|+.++.++.|+.++ +|+......... .+. ++.++++|+++++ ..++++.++++| +..+... . ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~-~---~~~ 78 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEILFS-YSKGAKMITRDGRELWNIAAP-A---GCE 78 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-EEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECC-T---TCE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-CeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCC-C---Ccc
Confidence 33556666889999999 676643333322 355 8899999999995 457899999877 4444221 0 123
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee------ccccccceEEEccCCCEEEEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~l~v~ 151 (287)
+..+...++|.+++++.. ..+.|+.++++...+..+. .....+.++.++++|+ ++++
T Consensus 79 ~~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~ 141 (276)
T 3no2_A 79 MQTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVP 141 (276)
T ss_dssp EEEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEE
T ss_pred ccccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEE
Confidence 456778889999986422 1457888887533233222 1123456778889998 5667
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
....++|..||.++.. ...+. ..+.|.++...++|+++++...
T Consensus 142 ~~~~~~v~~~d~~G~~---~w~~~--~~~~~~~~~~~~~g~~~v~~~~-------------------------------- 184 (276)
T 3no2_A 142 LFATSEVREIAPNGQL---LNSVK--LSGTPFSSAFLDNGDCLVACGD-------------------------------- 184 (276)
T ss_dssp ETTTTEEEEECTTSCE---EEEEE--CSSCCCEEEECTTSCEEEECBT--------------------------------
T ss_pred ecCCCEEEEECCCCCE---EEEEE--CCCCccceeEcCCCCEEEEeCC--------------------------------
Confidence 7778899999976321 12222 2345788888999999998876
Q ss_pred CCceEEEEECCC-CcEEEEEECCC--CccccceEEEEEe-CCEEEEEecCC
Q 023085 232 GGGAHLIHVAED-GTIIRNLVDPT--GQLMSFVTSGLQV-DNHLYVISLTS 278 (287)
Q Consensus 232 ~~~~~v~~~~~~-g~~~~~~~~~~--~~~~~~~~~~~~~-~g~l~i~~~~~ 278 (287)
.+.|+.++++ |+.++.+...+ +..+..++++... +|++|++++.+
T Consensus 185 --~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 185 --AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp --TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred --CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 3589999998 99999997532 3335567777775 79999999744
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-12 Score=114.26 Aligned_cols=207 Identities=12% Similarity=0.109 Sum_probs=138.3
Q ss_pred ccccCeEECC--CCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEE-------cCCCc-EEEEcCCCCCC
Q 023085 33 QTLVGLTSTK--EGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVE-------ASDGS-LYFTVSSSKYL 99 (287)
Q Consensus 33 ~~~~~i~~d~--dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~-------d~~g~-l~v~~~~~~~~ 99 (287)
.|. +|++|| +++||++... ++|.++| .++ ++.+..... ..+..|.+|++ +++|. ||+++....-.
T Consensus 140 ~p~-~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNG-RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEE-EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCC-EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 356 899997 4789999765 5799999 666 777654321 23567999999 99986 99987551000
Q ss_pred CcceeeeeeccCCCceEEEEeCCC-CeeE-----EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec-------CC
Q 023085 100 PHEYCLDILEGKPHGQLLKYDPSS-NITT-----LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK-------GE 166 (287)
Q Consensus 100 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-----~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~-------~~ 166 (287)
.....++.++... +.+. ........|++++++|+++.||+++...++|++++++ ++
T Consensus 218 -----------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 218 -----------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp -----------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred -----------ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 0123477776443 3432 1222456789999999877899999999999999987 44
Q ss_pred CCc-----c----eeE-EeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 023085 167 RKG-----K----LET-FAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 235 (287)
Q Consensus 167 ~~~-----~----~~~-~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (287)
... . ... +.......|.+|+++++|+ ||++... ..
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~----------------------------------~h 332 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN----------------------------------NH 332 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT----------------------------------TT
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC----------------------------------CC
Confidence 331 0 112 2212234688999999998 8999876 35
Q ss_pred EEEEECCCCc--EE---EEEECC-------CC----ccccceE-EEEEe--------CCEEEEEecCCCeEEEEeC
Q 023085 236 HLIHVAEDGT--II---RNLVDP-------TG----QLMSFVT-SGLQV--------DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 236 ~v~~~~~~g~--~~---~~~~~~-------~~----~~~~~~~-~~~~~--------~g~l~i~~~~~~~i~~~~~ 286 (287)
.|.++++++. .+ ..+... +| -.++.+. .++.+ ++.|||+...+++|.+++.
T Consensus 333 ~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 333 YFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 8888776542 22 222211 11 1356677 66664 4799999999999999874
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-12 Score=105.66 Aligned_cols=186 Identities=8% Similarity=0.016 Sum_probs=125.4
Q ss_pred cccCeEECC-CCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 34 TLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 34 ~~~~i~~d~-dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
+. +.+.++ +++||+++.. ..|++++ .++ .+.+.. ...|.+++++++|++|++.
T Consensus 15 ~E-gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~------~~~~~~i~~~~dG~l~v~~---------------- 71 (297)
T 3g4e_A 15 GE-SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM------DAPVSSVALRQSGGYVATI---------------- 71 (297)
T ss_dssp EE-EEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC------SSCEEEEEEBTTSSEEEEE----------------
T ss_pred cc-CCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC------CCceEEEEECCCCCEEEEE----------------
Confidence 44 777887 5678888755 5799999 455 544321 1367889999999999962
Q ss_pred cCCCceEEEEeCCCCeeEEeec-----cccccceEEEccCCCEEEEEeC-----------CCCEEEEEEecCCCCcceeE
Q 023085 110 GKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDEDYVVVCES-----------WKFRCRKYWLKGERKGKLET 173 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~l~v~~~-----------~~~~l~~~~~~~~~~~~~~~ 173 (287)
..+|+++|+++++++.+.. ....++.++++++|+ +|+++. ....|++++.++ +...
T Consensus 72 ---~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~ 143 (297)
T 3g4e_A 72 ---GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH----HVKK 143 (297)
T ss_dssp ---TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS----CEEE
T ss_pred ---CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC----CEEE
Confidence 3479999998888766543 234578899999998 888763 234788887543 1222
Q ss_pred EeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC---CCCcEE--
Q 023085 174 FAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA---EDGTII-- 247 (287)
Q Consensus 174 ~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~g~~~-- 247 (287)
... ....|++++++++|+ ||++... .+.|.+++ .+|...
T Consensus 144 ~~~-~~~~pngi~~spdg~~lyv~~~~----------------------------------~~~i~~~~~d~~~G~~~~~ 188 (297)
T 3g4e_A 144 YFD-QVDISNGLDWSLDHKIFYYIDSL----------------------------------SYSVDAFDYDLQTGQISNR 188 (297)
T ss_dssp EEE-EESBEEEEEECTTSCEEEEEEGG----------------------------------GTEEEEEEECTTTCCEEEE
T ss_pred Eee-ccccccceEEcCCCCEEEEecCC----------------------------------CCcEEEEeccCCCCcccCc
Confidence 221 123589999999985 8888765 24677775 335432
Q ss_pred EEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 248 RNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+.+..... ....+.+++++ +|+||+++..+++|.+++.
T Consensus 189 ~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 189 RSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred EEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 22321111 12357788887 7999999999999999975
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.3e-11 Score=100.22 Aligned_cols=209 Identities=13% Similarity=0.148 Sum_probs=139.3
Q ss_pred CCCCc-EEEEe-cCCeEEEEE--CCceEEEEeeCC----------ccccCeEECCCCc-EEEEeC--CCceEEEc-cCC-
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDS----------QTLVGLTSTKEGH-LIICDN--ANGLHKVS-EDG- 62 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~--~~~~~~~~~~~~----------~~~~~i~~d~dg~-l~v~~~--~~gi~~~~-~~g- 62 (287)
+++|. +|+++ .++.|..++ +++......... .|. +++++++|+ +|++.. ...|++++ .++
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR-ELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE-EEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc-eEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 46775 88887 468899999 555533322211 145 789999986 788863 24599999 666
Q ss_pred cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----ccccc
Q 023085 63 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFA 136 (287)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~ 136 (287)
....... ....|.+++++++|. +|+++ ..+.|+.+|..+++...... ....+
T Consensus 176 ~~~~~~~----~~~~~~~~~~s~dg~~l~~~~------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 176 LKTAIQN----TGKMSTGLALDSEGKRLYTTN------------------ADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEECC----CCTTCCCCEEETTTTEEEEEC------------------TTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred eEEEecC----CCCccceEEECCCCCEEEEEc------------------CCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 3332221 113478899999886 66642 34678899998887654322 23346
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHH
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIK 215 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~ 215 (287)
.+++++|+++.+|+++...+.|..+|....+. ...+. . +.+.+++++++|+ +|++...
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~-~~~~~~~~s~dg~~l~v~~~~---------------- 292 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNI--LAKVA--A-PESLAVLFNPARNEAYVTHRQ---------------- 292 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCE--EEEEE--C-SSCCCEEEETTTTEEEEEETT----------------
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEE--c-CCCceEEECCCCCEEEEEECC----------------
Confidence 67999999999999998888999999754322 11111 1 2367899999997 8888764
Q ss_pred HHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe--CCEEEEEecC
Q 023085 216 HVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLT 277 (287)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~ 277 (287)
.+.|..++.+ ++.+..+.... .+..+... +..||++...
T Consensus 293 ------------------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 293 ------------------AGKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ------------------TTEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred ------------------CCeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence 3578889875 66666666432 35666664 4569998875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-12 Score=106.39 Aligned_cols=199 Identities=13% Similarity=0.116 Sum_probs=126.7
Q ss_pred eEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCC
Q 023085 24 WVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 100 (287)
Q Consensus 24 ~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~ 100 (287)
.+.+......+. +++.+++|+ ||+++.. .+|++++++| .+.+... ...+++++++++|++|+++..
T Consensus 37 ~~~l~~~~~~~e-gp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~-----~~~~~gl~~d~dG~l~v~~~~----- 105 (305)
T 3dr2_A 37 LLTLYDQATWSE-GPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDA-----TAFTNGNAVDAQQRLVHCEHG----- 105 (305)
T ss_dssp CEEEECCCSSEE-EEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEES-----CSCEEEEEECTTSCEEEEETT-----
T ss_pred eEEEecCCcCcc-CCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCC-----CCccceeeECCCCCEEEEECC-----
Confidence 333333333445 788999997 6666544 6799998767 6555321 246789999999999997422
Q ss_pred cceeeeeeccCCCceEEEEeCCCCeeEEeecc-----ccccceEEEccCCCEEEEEeC-----------------CCCEE
Q 023085 101 HEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----FYFANGVALSRDEDYVVVCES-----------------WKFRC 158 (287)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~l~v~~~-----------------~~~~l 158 (287)
...|++++++ ++++.+... ...|+.++++++|+ +|+++. ....|
T Consensus 106 ------------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 106 ------------RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp ------------TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred ------------CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeE
Confidence 3579999986 766655322 24578899999997 888752 13578
Q ss_pred EEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEE
Q 023085 159 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHL 237 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (287)
++++.++++... +. ....|++++++++|+ ||++..... ......|
T Consensus 172 ~~~d~~~g~~~~---~~--~~~~p~gl~~spdg~~lyv~~~~~~-----------------------------~~~~~~i 217 (305)
T 3dr2_A 172 YRLPPDGSPLQR---MA--DLDHPNGLAFSPDEQTLYVSQTPEQ-----------------------------GHGSVEI 217 (305)
T ss_dssp EEECSSSCCCEE---EE--EESSEEEEEECTTSSEEEEEECCC--------------------------------CCCEE
T ss_pred EEEcCCCCcEEE---Ee--cCCCCcceEEcCCCCEEEEEecCCc-----------------------------CCCCCEE
Confidence 999875433322 22 113588999999996 888876410 0001467
Q ss_pred EEECCCCcEEE---EEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 238 IHVAEDGTIIR---NLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 238 ~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+++.++..+. .+.... ...+.++.++ +|+||+++ ++.|.+|+.
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~---~~~pdgi~~d~~G~lwv~~--~~gv~~~~~ 265 (305)
T 3dr2_A 218 TAFAWRDGALHDRRHFASVP---DGLPDGFCVDRGGWLWSSS--GTGVCVFDS 265 (305)
T ss_dssp EEEEEETTEEEEEEEEECCS---SSCCCSEEECTTSCEEECC--SSEEEEECT
T ss_pred EEEEecCCCccCCeEEEECC---CCCCCeEEECCCCCEEEec--CCcEEEECC
Confidence 77775433222 222111 1245667776 79999998 445888764
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=105.66 Aligned_cols=222 Identities=13% Similarity=0.093 Sum_probs=133.8
Q ss_pred ceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeec-CCccccccceEEEcCC----CcEEEEcCCC
Q 023085 23 TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYV-NGSKLRFANDVVEASD----GSLYFTVSSS 96 (287)
Q Consensus 23 ~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~-~~~~~~~~~~l~~d~~----g~l~v~~~~~ 96 (287)
+.+.+......|. ++++++||+|||++....|++++ ++ .+.+.... .......|.+|+++++ +.||+++...
T Consensus 22 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~ 99 (352)
T 2ism_A 22 RVEEVVGGLEVPW-ALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA 99 (352)
T ss_dssp CEEEEECCCSCEE-EEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred EEEEEECCCCCce-EEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence 4445555556788 99999999999999776788887 66 55443221 1112457899999997 7899975320
Q ss_pred CCCCcceeeeeeccCCCceEEEEeCCCCee---EEeec-------cccccceEEEccCCCEEEEEeC-------------
Q 023085 97 KYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVAD-------GFYFANGVALSRDEDYVVVCES------------- 153 (287)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~-------~~~~~~~i~~~~~~~~l~v~~~------------- 153 (287)
. ......|++++...+.+ +.+.. ....+++++++|||. ||++..
T Consensus 100 ~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~ 166 (352)
T 2ism_A 100 E------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLAS 166 (352)
T ss_dssp T------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred C------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence 0 00115688887654321 11111 123568999999995 999863
Q ss_pred CCCEEEEEEecCCC-----C-----cceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCC
Q 023085 154 WKFRCRKYWLKGER-----K-----GKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 222 (287)
Q Consensus 154 ~~~~l~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (287)
..++|++++.++.- + ...+.+.... ..|.++++|+ +|+||++....... +.
T Consensus 167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~-----------~~------ 228 (352)
T 2ism_A 167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGE-----------QG------ 228 (352)
T ss_dssp SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC----------------------
T ss_pred CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCC-----------CC------
Confidence 12589999876510 0 1223333211 2489999999 89999999763110 00
Q ss_pred ccccccccCCCceEEEEECCCCcEEEE----------EECCCC--ccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 223 KLFSQFITLGGGAHLIHVAEDGTIIRN----------LVDPTG--QLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~g~~~~~----------~~~~~~--~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.....|.++.+.+.+-+. +..|.- .....++++.+.+|+||++...+.+|.++++
T Consensus 229 ---------~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~ 295 (352)
T 2ism_A 229 ---------YGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLVL 295 (352)
T ss_dssp ----------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEETTEEEEEETTTTEEEEEEE
T ss_pred ---------CCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEECCEEEEEECCCCEEEEEEE
Confidence 001235555433311000 000000 0012467777789999999999999999876
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-11 Score=113.75 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=132.8
Q ss_pred CCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEE
Q 023085 41 TKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 117 (287)
Q Consensus 41 d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 117 (287)
++...|+++. .+.|.+++ ..+ .+.+... +..+.+|+++. ++.||++|.. .+.|+
T Consensus 393 ~~~p~Ll~an-~~~Ir~i~l~~~~~~~l~~~-----~~~~~gl~~d~~~~~lY~sD~~-----------------~~~I~ 449 (791)
T 3m0c_C 393 GSIAYLFFTN-RHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLS-----------------QRMIC 449 (791)
T ss_dssp TSCCEEEEEC-BSSEEEECTTSCCCEEEECS-----CSSEEEEEEETTTTEEEEEETT-----------------TTEEE
T ss_pred cccccccccc-ccceeEeeccCCcceeeecC-----CCceEEEeecccCCeeEEeecc-----------------ceeEE
Confidence 3334566665 45788888 444 5555322 35678999997 6789998643 46788
Q ss_pred EEeCCCC----eeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-C
Q 023085 118 KYDPSSN----ITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-G 191 (287)
Q Consensus 118 ~~~~~~~----~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G 191 (287)
++++... .... +...+..|.||+++..++.|||++...++|.++++++.. ...+.......|.+|++|+. |
T Consensus 450 ~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~---~~~l~~~~l~~P~gIaVDp~~g 526 (791)
T 3m0c_C 450 STQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHG 526 (791)
T ss_dssp EEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTT
T ss_pred EEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe---EEEEEeCCCCCcceEEEecCCC
Confidence 8887632 2222 334678899999999888899999999999999987532 22333223346999999984 8
Q ss_pred CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe--CC
Q 023085 192 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DN 269 (287)
Q Consensus 192 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g 269 (287)
.||++.... ...|.+++.+|.....+... + +..+.+++++ ++
T Consensus 527 ~LYwtD~g~---------------------------------~~~I~~~~~dG~~~~~lv~~-~--l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 527 FMYWTDWGT---------------------------------PAKIKKGGLNGVDIYSLVTE-N--IQWPNGITLDLLSG 570 (791)
T ss_dssp EEEEEECSS---------------------------------SCEEEEEETTSCCEEEEECS-S--CSCEEEEEEETTTT
T ss_pred CEEEecCCC---------------------------------CCeEEEEecCCCceEEEEeC-C--CCCceEEEEecCCC
Confidence 999998751 14899999999877776542 2 4578889887 69
Q ss_pred EEEEEecCCCeEEEEeCC
Q 023085 270 HLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 270 ~l~i~~~~~~~i~~~~~~ 287 (287)
+||++....++|.+++++
T Consensus 571 ~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred eEEEEeCCCCcEEEEecC
Confidence 999999999999999875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-11 Score=99.97 Aligned_cols=193 Identities=14% Similarity=0.131 Sum_probs=131.0
Q ss_pred cccCeEECCCCcEEEEeC---CCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeee
Q 023085 34 TLVGLTSTKEGHLIICDN---ANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 108 (287)
Q Consensus 34 ~~~~i~~d~dg~l~v~~~---~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~ 108 (287)
+. |+++++||+||+++. .+.|.++| ++| +..-.... ...++.+++.+ .++||+++.
T Consensus 23 ~~-Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~---~~~fgeGi~~~-g~~lyv~t~-------------- 83 (266)
T 2iwa_A 23 TQ-GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD---DSYFGEGLTLL-NEKLYQVVW-------------- 83 (266)
T ss_dssp EE-EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC---TTCCEEEEEEE-TTEEEEEET--------------
T ss_pred cc-cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC---CCcceEEEEEe-CCEEEEEEe--------------
Confidence 56 999999999999974 25699999 777 33322211 12345567776 458999742
Q ss_pred ccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc---CCCCCcce
Q 023085 109 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN---LPGAPDNI 185 (287)
Q Consensus 109 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~i 185 (287)
..+.++.+|+++.++..-.... .+.|+.+++|++.+|+++ .++.|..+|.++.+... ...... ....|+.+
T Consensus 84 ---~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~-~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 84 ---LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIK-KHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp ---TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEE-EEECEETTEECCCEEEE
T ss_pred ---cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEE-EEEECCCCcccccceeE
Confidence 3578999999887654322212 467777888999999998 67899999976432111 111111 11136677
Q ss_pred eeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCC---------
Q 023085 186 NLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTG--------- 255 (287)
Q Consensus 186 ~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~--------- 255 (287)
.+. +|.||+..+. .+.|.++|++ ++.+..+..+..
T Consensus 158 e~~-dg~lyvn~~~----------------------------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~ 202 (266)
T 2iwa_A 158 EYI-NGEVWANIWQ----------------------------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGF 202 (266)
T ss_dssp EEE-TTEEEEEETT----------------------------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTC
T ss_pred EEE-CCEEEEecCC----------------------------------CCeEEEEECCCCcEEEEEECCCcccccccccc
Confidence 777 7899988875 3589999985 778888775311
Q ss_pred ccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 256 QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 256 ~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
.....+.++..+ +++||+++...+.|.++++
T Consensus 203 ~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 203 RDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred cccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 011345777776 4799999999999999876
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-10 Score=97.19 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=139.7
Q ss_pred CCCcEEEEe-cCCeEEEEE-C--CceEEEE--eeCCccccCeEECCCCc-EEEEeCC-CceEEEc-c--CC-cEEEeeec
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-D--GTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-E--DG-VENFLSYV 70 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~--~~~~~~~--~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~--~g-~~~~~~~~ 70 (287)
....+|++. .++.|..|+ + ++..... .....+. .++++++|+ |+++... ..|..++ . ++ .+.+....
T Consensus 3 ~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 3 LKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp CEEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred ceEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc-eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 345688884 688899998 3 5444332 2344566 899999997 7887765 4566655 3 55 55443322
Q ss_pred CCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe---eEEeeccccccceEEEccCCC
Q 023085 71 NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~ 146 (287)
. ...|..++++++|. +|++.. ..+.|..++...+. ..........+..++++|+++
T Consensus 82 ~---~~~~~~~~~s~dg~~l~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 82 L---PGSLTHISTDHQGQFVFVGSY-----------------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR 141 (343)
T ss_dssp C---SSCCSEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS
T ss_pred c---CCCCcEEEEcCCCCEEEEEec-----------------CCCeEEEEECCCCccccccccccCCCCceEEEECCCCC
Confidence 1 12678899999997 666532 23456666652232 222233345688899999999
Q ss_pred EEEEEeCCCCEEEEEEecC-CCCccee--EEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCC
Q 023085 147 YVVVCESWKFRCRKYWLKG-ERKGKLE--TFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYP 222 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (287)
.+|+++...+.|..|++.. .+..... .........|.+++++++|+ +|++...
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~----------------------- 198 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL----------------------- 198 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------------
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------------
Confidence 9999986778999999864 3322211 22212223578899999997 7777643
Q ss_pred ccccccccCCCceEEEEECCC---CcE--EEEEE-CCCC-ccccceEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 023085 223 KLFSQFITLGGGAHLIHVAED---GTI--IRNLV-DPTG-QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~---g~~--~~~~~-~~~~-~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.+..++.+ +.. ...+. .+.+ .....+..+... +..||++....+.|.+++++
T Consensus 199 -----------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 199 -----------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp -----------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred -----------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 1355555542 222 22332 1222 112244556664 35788888778888888763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=104.22 Aligned_cols=191 Identities=13% Similarity=0.123 Sum_probs=128.2
Q ss_pred CccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 32 SQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
..|. +++++++|+||+++.. +.|+++++++ ....... ...|++++++++|++|+++..
T Consensus 32 ~~pe-gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~-----~~~p~gia~~~dG~l~vad~~-------------- 91 (306)
T 2p4o_A 32 TFLE-NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-----EGKVSGLAFTSNGDLVATGWN-------------- 91 (306)
T ss_dssp CCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-----SSEEEEEEECTTSCEEEEEEC--------------
T ss_pred CCcc-eEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeC-----CCCceeEEEcCCCcEEEEecc--------------
Confidence 4567 9999999999999854 5699999666 4443322 136889999999999998632
Q ss_pred cCCCceEEEEeCCCCeeEEeec--cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEE-------e-ccCC
Q 023085 110 GKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF-------A-ENLP 179 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~-------~-~~~~ 179 (287)
.....|+++++.+++++.+.. ....+++++..+++ .+|+++...++|++++..... .+.... . ....
T Consensus 92 -~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~-~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 92 -ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp -TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCS
T ss_pred -CCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCc-EeEEEECCccccccccCCC
Confidence 112358899887787765532 34567888876544 689999878899999965321 011000 0 0111
Q ss_pred CCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC--cE--EEEEECCC
Q 023085 180 GAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG--TI--IRNLVDPT 254 (287)
Q Consensus 180 ~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--~~--~~~~~~~~ 254 (287)
..|+++ +++| .||++... .+.|.+++.++ +. ...+..
T Consensus 169 ~~pngi--s~dg~~lyv~d~~----------------------------------~~~I~~~~~~~~g~~~~~~~~~~-- 210 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTE----------------------------------KMLLLRIPVDSTDKPGEPEIFVE-- 210 (306)
T ss_dssp CSEEEE--EEETTEEEEEETT----------------------------------TTEEEEEEBCTTSCBCCCEEEEE--
T ss_pred CcCCCc--CcCCCEEEEEeCC----------------------------------CCEEEEEEeCCCCCCCccEEEec--
Confidence 257777 4555 69999876 35788888653 21 122221
Q ss_pred CccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 255 GQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 255 ~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
...+..++.+ +|+||++...+++|.+|+.
T Consensus 211 ---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 211 ---QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp ---SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred ---cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 1346777777 7899999999999999874
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=105.01 Aligned_cols=212 Identities=12% Similarity=0.147 Sum_probs=133.7
Q ss_pred CceEEEEeeCCccccCeEECCCCcEEEEeCC--C---ceEEEccCC-cEEEeee--cCCccccccceEEEcCCCcEEEEc
Q 023085 22 GTWVNWKFIDSQTLVGLTSTKEGHLIICDNA--N---GLHKVSEDG-VENFLSY--VNGSKLRFANDVVEASDGSLYFTV 93 (287)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~--~---gi~~~~~~g-~~~~~~~--~~~~~~~~~~~l~~d~~g~l~v~~ 93 (287)
++++.+......|. +++++++|++|++... . .|+.++ +| +.++... .....+..|.++++|++|+||++|
T Consensus 7 g~~~~v~~~~~~p~-~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 7 DRLEVVAELSLAPG-NITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp -CCEEEEEESSCEE-EEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred ceeEEEEEcCCCcc-eEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 34444444445677 9999999999999532 2 478887 67 5544321 111235689999999999999986
Q ss_pred CCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeec------cccccceEEEccCCCEEEEEeC---CCCEEEEEEe
Q 023085 94 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVAD------GFYFANGVALSRDEDYVVVCES---WKFRCRKYWL 163 (287)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~------~~~~~~~i~~~~~~~~l~v~~~---~~~~l~~~~~ 163 (287)
... .......|+++|++++++ ..+.. ....+++++++++++.+|+++. ..+.|.+++.
T Consensus 85 ~g~------------~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 85 NGN------------QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp CHH------------HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred CCC------------CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence 330 001135799999988874 33321 1235789999988778999998 7789999997
Q ss_pred cCCCCccee-----------EE-ecc--------------CCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHH
Q 023085 164 KGERKGKLE-----------TF-AEN--------------LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH 216 (287)
Q Consensus 164 ~~~~~~~~~-----------~~-~~~--------------~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~ 216 (287)
++.+..... .+ ... ....+++|+++++|+ ||++...
T Consensus 153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~----------------- 215 (343)
T 2qe8_A 153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH----------------- 215 (343)
T ss_dssp TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-----------------
T ss_pred CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-----------------
Confidence 643211100 00 000 012368899999984 8888765
Q ss_pred HHHhCCccccccccCCCceEEEEECCC----CcE--------EEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEE
Q 023085 217 VLAAYPKLFSQFITLGGGAHLIHVAED----GTI--------IRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK 283 (287)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~----g~~--------~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~ 283 (287)
...+++++.+ +.. +..+.. ...+.+++.+ +|+||++...+++|.+
T Consensus 216 -----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~g~pdgia~d~~G~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 216 -----------------STSMYRIKSADLSNLQLTDAELGSKIERYSE-----KPICDGISIDKDHNIYVGDLAHSAIGV 273 (343)
T ss_dssp -----------------CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE-----CCSCSCEEECTTCCEEEEEGGGTEEEE
T ss_pred -----------------CCeEEEEEHHHhcCCCCChhhhhcceEeccc-----CCCCceEEECCCCCEEEEccCCCeEEE
Confidence 2367776521 110 111110 1135566776 6899999999999999
Q ss_pred EeC
Q 023085 284 VQL 286 (287)
Q Consensus 284 ~~~ 286 (287)
++.
T Consensus 274 ~d~ 276 (343)
T 2qe8_A 274 ITS 276 (343)
T ss_dssp EET
T ss_pred EEC
Confidence 875
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=121.89 Aligned_cols=171 Identities=14% Similarity=0.112 Sum_probs=116.7
Q ss_pred CCcEEEEe-cCCeEEEEE-CC-----ceEEEEe-eCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecC
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DG-----TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVN 71 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~-----~~~~~~~-~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~ 71 (287)
++.||+++ .+++|++++ ++ ....+.. ....|. +|++|+ .++||+++.. +.|.+++.+| .+.+..
T Consensus 417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~--- 492 (699)
T 1n7d_A 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--- 492 (699)
T ss_dssp TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---
T ss_pred cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---
Confidence 56899887 567899998 54 1111211 223577 999994 6689999755 5688888666 444422
Q ss_pred CccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEE
Q 023085 72 GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 72 ~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~ 149 (287)
..+..|++|++++ .|.||+++.. ..+.|++++++....+.+ ...+..|+||+++++++.||
T Consensus 493 -~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 493 -EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp -CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEE
T ss_pred -CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEE
Confidence 1245789999997 5789997633 125788888763322222 34577899999999888899
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEec--cCCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
|++...++|.++++++. ..+.+.. .....|.+|++|.+ +||++...
T Consensus 556 ~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~-~lywtd~~ 603 (699)
T 1n7d_A 556 WVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED-KVFWTDII 603 (699)
T ss_dssp EEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT-EEEEECST
T ss_pred EEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC-EEEEEeCC
Confidence 99999999999998752 2233332 12346999999976 68877765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-10 Score=100.73 Aligned_cols=161 Identities=8% Similarity=0.008 Sum_probs=100.6
Q ss_pred EEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCCcEEEeeec-CCccccccceEEEcCC----CcEEEEcCCCCCCC
Q 023085 26 NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYV-NGSKLRFANDVVEASD----GSLYFTVSSSKYLP 100 (287)
Q Consensus 26 ~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g~~~~~~~~-~~~~~~~~~~l~~d~~----g~l~v~~~~~~~~~ 100 (287)
.+......|. +|++++||+|||++....|++++.+|.+.+.... .......|.+|+++++ |.||+++....
T Consensus 23 ~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~--- 98 (354)
T 3a9g_A 23 EVASDLEVPW-SIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA--- 98 (354)
T ss_dssp EEECSCSCEE-EEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC---
T ss_pred EEeCCCCCCe-EEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC---
Confidence 3344445788 9999999999999977778888755542222111 1112346889999986 89999742100
Q ss_pred cceeeeeeccCCCceEEEEeCCCC--e---eEEe----e-ccccccceEEEccCCCEEEEEeCC-------------CCE
Q 023085 101 HEYCLDILEGKPHGQLLKYDPSSN--I---TTLV----A-DGFYFANGVALSRDEDYVVVCESW-------------KFR 157 (287)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~~~~~~~--~---~~~~----~-~~~~~~~~i~~~~~~~~l~v~~~~-------------~~~ 157 (287)
........|++++.+.+ . .+.+ . .....+++++++|||. ||++... .++
T Consensus 99 -------~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 99 -------EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp -------GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSE
T ss_pred -------CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeE
Confidence 00001146888876543 1 1211 1 1123568899999996 9998531 258
Q ss_pred EEEEEecCCC-----CcceeEEeccCCCCCcceeeCC-CCCEEEEEec
Q 023085 158 CRKYWLKGER-----KGKLETFAENLPGAPDNINLAP-DGTFWIAIIK 199 (287)
Q Consensus 158 l~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~ 199 (287)
|++++.++.. +...+.+.... -.|.++++|+ +|+||++...
T Consensus 171 I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 171 ILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp EEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECC
T ss_pred EEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecC
Confidence 9999876521 00223343222 2489999999 8999999976
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-10 Score=93.80 Aligned_cols=215 Identities=11% Similarity=0.078 Sum_probs=139.1
Q ss_pred CCCCcEEEEecCCeEEEEE-CCceEEEEeeC--CccccCeEECCCCcEEEEeCC--CceEEEccCC--cEEEeeecC-Cc
Q 023085 2 DKNGVIYTATRDGWIKRLQ-DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNA--NGLHKVSEDG--VENFLSYVN-GS 73 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~~~~~~~~~~~--~~~~~~i~~d~dg~l~v~~~~--~gi~~~~~~g--~~~~~~~~~-~~ 73 (287)
.++|++++ +.+++|..++ +|+........ .... +....++|++++++.. ..++.++++| +..+..... ..
T Consensus 45 ~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~ 122 (276)
T 3no2_A 45 TKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIER 122 (276)
T ss_dssp CTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSS
T ss_pred CCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCc
Confidence 47899999 5677899999 77654433332 1233 6778899999998654 3588888777 444422111 12
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
+...+..+.+.++|++++++. ..+.|..+|++ |++.........|.++...++++ +++++.
T Consensus 123 ~~~~~~~v~~~~~G~~lv~~~-----------------~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~ 183 (276)
T 3no2_A 123 PHAQFRQINKNKKGNYLVPLF-----------------ATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACG 183 (276)
T ss_dssp GGGSCSCCEECTTSCEEEEET-----------------TTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECB
T ss_pred ccccccCceECCCCCEEEEec-----------------CCCEEEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeC
Confidence 234566788899999998743 25689999988 76554433334677888888887 667777
Q ss_pred CCCEEEEEEecCCCCcceeEEec-cCC----CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 154 WKFRCRKYWLKGERKGKLETFAE-NLP----GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~-~~~----~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
.+++|..++.++++. ...+.. ..+ ..|.+++..++|+++++...++..
T Consensus 184 ~~~~v~~~d~~tG~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~------------------------- 236 (276)
T 3no2_A 184 DAHCFVQLNLESNRI--VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR------------------------- 236 (276)
T ss_dssp TTSEEEEECTTTCCE--EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCT-------------------------
T ss_pred CCCeEEEEeCcCCcE--EEEecCCCCCCccccccccceEcCCCCEEEEeccCccc-------------------------
Confidence 778899999763321 112211 111 237788899999999999642100
Q ss_pred cc-CCCceEEEEECCCCcEEEEEECCCCccccceEEEEE
Q 023085 229 IT-LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ 266 (287)
Q Consensus 229 ~~-~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 266 (287)
.. ....+.++.++++|+.++.|..... +..+++++.
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~~~~~~~--~~~~~~~~~ 273 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQLNDKVK--FGMISTICP 273 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEEECCTTT--SCCCCEEEE
T ss_pred cccccCCceEEEECCCCCEEEEecCccc--ccceeeeee
Confidence 00 0013468999999999999975332 455666543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-09 Score=92.46 Aligned_cols=222 Identities=13% Similarity=0.135 Sum_probs=150.2
Q ss_pred CCCCc-EEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCCc
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~ 73 (287)
+++|. |+++. .++.|..|+ +++..........+. .++++++|+ |+++... ..|.+++ .++ .......
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---- 114 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---- 114 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----
T ss_pred CCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC----
Confidence 46775 55554 788999999 566555444444556 899999996 6777644 5688888 666 3332221
Q ss_pred cccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEe
Q 023085 74 KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
...+.+++++++|. +|++. ...+.|+.+|..+++..........+..++++|+++.+|++.
T Consensus 115 -~~~~~~~~~s~dg~~l~~~~-----------------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 176 (391)
T 1l0q_A 115 -GKSPLGLALSPDGKKLYVTN-----------------NGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN 176 (391)
T ss_dssp -SSSEEEEEECTTSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred -CCCcceEEECCCCCEEEEEe-----------------CCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEe
Confidence 13568899999986 66753 235689999988787655544445678899999999999998
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
...+.|..+|+...+ ..... .....+.+++++++|+ ||++...
T Consensus 177 ~~~~~v~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-------------------------------- 220 (391)
T 1l0q_A 177 FDSMSISVIDTVTNS---VIDTV-KVEAAPSGIAVNPEGTKAYVTNVD-------------------------------- 220 (391)
T ss_dssp TTTTEEEEEETTTTE---EEEEE-ECSSEEEEEEECTTSSEEEEEEEC--------------------------------
T ss_pred CCCCEEEEEECCCCe---EEEEE-ecCCCccceEECCCCCEEEEEecC--------------------------------
Confidence 888899999975432 11111 1223577889999885 6666641
Q ss_pred CCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 023085 232 GGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 232 ~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~~ 287 (287)
...+.|..++.+ ++.+..+.... .+..+... +..||++....+.|.++|+.
T Consensus 221 ~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 221 KYFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp SSCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cCCCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 013578888865 55666665422 35556554 45788998888899988863
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-10 Score=94.62 Aligned_cols=226 Identities=12% Similarity=0.116 Sum_probs=134.7
Q ss_pred CCCCc-EEEEecC-CeEEEEE-C---CceEEEEe--eCCccccCeEECCCCc-EEEEeCCCc-eEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTATRD-GWIKRLQ-D---GTWVNWKF--IDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~~~-g~i~~~~-~---~~~~~~~~--~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~-~~g-~~~~~~~ 69 (287)
+++|. ||+++.+ +.|..|+ + ++...... ....+. .++++++|+ ||++....+ |..++ .++ .......
T Consensus 46 spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 124 (343)
T 1ri6_A 46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 124 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc
Confidence 56775 8888765 8888877 3 45443322 233566 899999997 777765444 77777 455 2222222
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeEEe------eccccccceEEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLV------ADGFYFANGVAL 141 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~------~~~~~~~~~i~~ 141 (287)
... ...+.+++++++|. +|+++. ..+.|..++..+ +++... ......+..+++
T Consensus 125 ~~~--~~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 125 VEG--LDGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp ECC--CTTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred ccC--CCCceEEEECCCCCEEEEecC-----------------CCCEEEEEEecCCCceeeecccccccCCCCCcceEEE
Confidence 111 23578899999986 666531 245677777655 554321 122346778999
Q ss_pred ccCCCEEEEEeCCCCEEEEEEecC--CCCcceeEEeccC-----CCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchh
Q 023085 142 SRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENL-----PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKL 213 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~~~--~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~ 213 (287)
+|+++.+|++....+.+..|+++. ............. ...+..++++++|+ ||++...
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-------------- 251 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-------------- 251 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--------------
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC--------------
Confidence 999999999987788999999853 2221122221111 11344699999995 6666543
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCC--CcE---EEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 214 IKHVLAAYPKLFSQFITLGGGAHLIHVAED--GTI---IRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~---~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ +.. +..+.. +. .+..+..+ +..||+++...+.|.++++
T Consensus 252 --------------------~~~i~v~d~~~~~~~~~~~~~~~~--~~---~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 252 --------------------ASLITVFSVSEDGSVLSKEGFQPT--ET---QPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp --------------------TTEEEEEEECTTSCCEEEEEEEEC--SS---SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred --------------------CCEEEEEEEcCCCCceEEeeeecC--CC---ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 1345555433 332 222332 11 24555554 4568888877788888754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=9.2e-10 Score=94.95 Aligned_cols=237 Identities=14% Similarity=0.074 Sum_probs=134.8
Q ss_pred CCCCc-EEEEecCCeEEEEE---CCceEEEEee--CCccccCeEECCCCc-EEE--Ee-------------CCCceEEEc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ---DGTWVNWKFI--DSQTLVGLTSTKEGH-LII--CD-------------NANGLHKVS 59 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~---~~~~~~~~~~--~~~~~~~i~~d~dg~-l~v--~~-------------~~~gi~~~~ 59 (287)
+++|. ||+++.+ .|..|+ +++....... .+.|. .+++++||+ |++ ++ ....+..++
T Consensus 48 spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~ 125 (365)
T 1jof_A 48 DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFS 125 (365)
T ss_dssp CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEE
T ss_pred CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEc
Confidence 57785 7777766 788777 4655433221 23466 789999998 344 32 223344444
Q ss_pred --cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CCeeEEeec---
Q 023085 60 --EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVAD--- 131 (287)
Q Consensus 60 --~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~--- 131 (287)
.+| ...............+.+++++++|+ +|+++.+ ...|+.++.+ ++++..+..
T Consensus 126 ~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~ 188 (365)
T 1jof_A 126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEVELVGSVDA 188 (365)
T ss_dssp ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEEC
T ss_pred cCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCCEEEeeeEec
Confidence 356 43221211001124678999999996 6665422 3467777665 566543211
Q ss_pred --cccccceEEEccCCCEEEEEeCCCCEEEEEEecC--CCCcc-eeEEeccC---CC---------CCccee-eCCCCC-
Q 023085 132 --GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGK-LETFAENL---PG---------APDNIN-LAPDGT- 192 (287)
Q Consensus 132 --~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~--~~~~~-~~~~~~~~---~~---------~~~~i~-~d~~G~- 192 (287)
....|..++++|+|+.+|+++...+.+..|+.+. ++... ...+.... .+ .+.+++ +++||+
T Consensus 189 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence 1356888999999999999988778888887652 22110 11111111 11 367899 999996
Q ss_pred EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE---EECCCCccccceEEEEE---
Q 023085 193 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN---LVDPTGQLMSFVTSGLQ--- 266 (287)
Q Consensus 193 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~--- 266 (287)
||++...... ..+..-.++.++++|+.... ....... .....+.+
T Consensus 269 l~v~~~~~~~---------------------------~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--~~~~a~sp~~~ 319 (365)
T 1jof_A 269 MFASSRANKF---------------------------ELQGYIAGFKLRDCGSIEKQLFLSPTPTSG--GHSNAVSPCPW 319 (365)
T ss_dssp EEEEEEESST---------------------------TSCCEEEEEEECTTSCEEEEEEEEECSSCC--TTCCCEEECTT
T ss_pred EEEECCCCCC---------------------------CCCCeEEEEEECCCCCEEEeeeeeecCCCC--cccceecCCCc
Confidence 7776654100 00001234555555664432 2221111 11234455
Q ss_pred eCCEEEEEecCCCeEEEEeC
Q 023085 267 VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 267 ~~g~l~i~~~~~~~i~~~~~ 286 (287)
+++.||+++..++.|.++++
T Consensus 320 dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEE
T ss_pred CCCEEEEEEcCCCeEEEEEE
Confidence 57889999988888888875
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-11 Score=101.19 Aligned_cols=244 Identities=14% Similarity=0.122 Sum_probs=142.8
Q ss_pred CCCCCc-EEEEecCCeEEEEE-CCceEE-EEe-------eCCccccCeEECC----CCcEEEEeCC--------CceEEE
Q 023085 1 MDKNGV-IYTATRDGWIKRLQ-DGTWVN-WKF-------IDSQTLVGLTSTK----EGHLIICDNA--------NGLHKV 58 (287)
Q Consensus 1 ~d~~G~-l~~~~~~g~i~~~~-~~~~~~-~~~-------~~~~~~~~i~~d~----dg~l~v~~~~--------~gi~~~ 58 (287)
++++|+ ||++...|+|++++ ++.... +.. ....+. +|++++ ++.||++... ..|.++
T Consensus 25 ~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~ 103 (353)
T 2g8s_A 25 FLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYG 103 (353)
T ss_dssp ECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEE
T ss_pred EcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEE
Confidence 468899 99999999999998 655421 111 112346 899998 5899999532 257777
Q ss_pred c-cC--C-cEE---EeeecCC--ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-----
Q 023085 59 S-ED--G-VEN---FLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN----- 124 (287)
Q Consensus 59 ~-~~--g-~~~---~~~~~~~--~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 124 (287)
+ .. + +.. +...... ...+.+..|+++++|.||++....-...... ......+.|+|++++..
T Consensus 104 ~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q----~~~~~~g~I~ri~~dG~~p~~n 179 (353)
T 2g8s_A 104 RLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQ----DLDKLQGKLVRLTDQGEIPDDN 179 (353)
T ss_dssp EECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGG----CTTSCTTEEEEEETTSCCCTTC
T ss_pred EECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccC----CCCCCCeEEEEECCCCCCCCCC
Confidence 6 32 2 222 2111111 1234578999999999999853310000000 00123468999998732
Q ss_pred --------eeEEeeccccccceEEEccCCCEEEEEeCCCC---EEEEEEecCCCCc---------------------cee
Q 023085 125 --------ITTLVADGFYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKG---------------------KLE 172 (287)
Q Consensus 125 --------~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~---~l~~~~~~~~~~~---------------------~~~ 172 (287)
..+.+...+..|.+++++++...||+++...+ .|.++.. +...+ ...
T Consensus 180 pf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~~~~~~~~~~~~~~~~~~ 258 (353)
T 2g8s_A 180 PFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWGINYSGFKIPEAKGEIVA 258 (353)
T ss_dssp TTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSSBCTTSSCCTTCCBSSCT
T ss_pred CCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCCCCCCCCccCcccCCCCC
Confidence 23344556778999999995556999987542 4444321 11100 000
Q ss_pred EEec-----cCCCCCcceeeCC-------CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEE
Q 023085 173 TFAE-----NLPGAPDNINLAP-------DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 240 (287)
Q Consensus 173 ~~~~-----~~~~~~~~i~~d~-------~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (287)
.+.. .....|.++++.+ +|++|++... .+.|.++
T Consensus 259 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~----------------------------------~~~v~~~ 304 (353)
T 2g8s_A 259 GTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK----------------------------------DKDVIVM 304 (353)
T ss_dssp TSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT----------------------------------TTEEEEE
T ss_pred CccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc----------------------------------CCEEEEE
Confidence 0000 0112467788753 5889999876 3578888
Q ss_pred CCCC-cEEEEEECCCCccccceEEEEEe-CCEEEEEec-CCCeEEEEe
Q 023085 241 AEDG-TIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISL-TSNFIGKVQ 285 (287)
Q Consensus 241 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~-~~~~i~~~~ 285 (287)
+.++ +.......-.+ ....+..+.++ +|.|||++- ..++|.++.
T Consensus 305 ~~~~~~~~~~~~~~~~-~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 305 SVNGDKVTEDGRILTD-RGQRIRDVRTGPDGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp EEETTEEEEEEEESGG-GCCCEEEEEECTTSCEEEEECSTTEEEEEEE
T ss_pred EeCCCeEeeeEEcccC-CCCceeEEEECCCCcEEEEEeCCCCEEEEEe
Confidence 7654 33222111111 12367888886 799999854 678898875
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.7e-10 Score=94.36 Aligned_cols=209 Identities=9% Similarity=0.052 Sum_probs=131.2
Q ss_pred EEEEeeCCccccCeEECCCCcEEEEeC-CCceEEEc-cCC-cEEEeeec--CCccccccceEEEcC----CCcEEEEcCC
Q 023085 25 VNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG-VENFLSYV--NGSKLRFANDVVEAS----DGSLYFTVSS 95 (287)
Q Consensus 25 ~~~~~~~~~~~~~i~~d~dg~l~v~~~-~~gi~~~~-~~g-~~~~~~~~--~~~~~~~~~~l~~d~----~g~l~v~~~~ 95 (287)
+.+......|+ +|++.+||+|||++. ...|++++ .+| .+.+.... .......+.+|++++ ++.||++.+.
T Consensus 25 ~~va~gL~~P~-~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 25 RTVATGLNSPW-GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred EEeecCCCCce-EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 34444456788 999999999999997 45688898 456 55443221 112245678999997 4889996321
Q ss_pred CCCCCcceeeeeeccCCCceEEEEeCCCC--------eeEEeec-----cccccceEEEccCCCEEEEEeC---------
Q 023085 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSN--------ITTLVAD-----GFYFANGVALSRDEDYVVVCES--------- 153 (287)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~-----~~~~~~~i~~~~~~~~l~v~~~--------- 153 (287)
...+.|.|+....+ +.+.+.. .......|+|+|||. ||++.-
T Consensus 104 ---------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~q 167 (347)
T 3das_A 104 ---------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQ 167 (347)
T ss_dssp ---------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTT
T ss_pred ---------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCcccc
Confidence 12357888865431 1122211 122345699999996 999842
Q ss_pred ----CCCEEEEEEecCCC-----CcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 154 ----WKFRCRKYWLKGER-----KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 154 ----~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
..++|++++.++.. +...+.+.... -.|.++++|++|.||++.....
T Consensus 168 d~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~----------------------- 223 (347)
T 3das_A 168 DRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQD----------------------- 223 (347)
T ss_dssp CTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSS-----------------------
T ss_pred CCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCC-----------------------
Confidence 34789999976521 11223443222 2489999999999999998621
Q ss_pred ccccccCCCceEEEEECCCCcE-----------------EEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 225 FSQFITLGGGAHLIHVAEDGTI-----------------IRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~g~~-----------------~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
....|.++.+.+.+ +..+.. . ...++++.+.+|.+|++.+.+.+|.++.+
T Consensus 224 --------~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-~---~~ap~G~~~~~g~~~~~~l~~~~l~~v~~ 290 (347)
T 3das_A 224 --------TWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-D---EASPSGIAYAEGSVWMAGLRGERLWRIPL 290 (347)
T ss_dssp --------SCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-T---TCCEEEEEEETTEEEEEESTTCSEEEEEE
T ss_pred --------CCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-C---CCCCcceEEEcCceeeccccCCEEEEEEe
Confidence 11244444332221 111110 0 02567888889999999999999999876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-09 Score=92.05 Aligned_cols=186 Identities=11% Similarity=0.044 Sum_probs=107.3
Q ss_pred CcEEEEecC--CeEEEEE----CCceEEEEee--C--CccccCeEECCCCc-EEEEeCCCceEEEc-c-CC-cEEEeeec
Q 023085 5 GVIYTATRD--GWIKRLQ----DGTWVNWKFI--D--SQTLVGLTSTKEGH-LIICDNANGLHKVS-E-DG-VENFLSYV 70 (287)
Q Consensus 5 G~l~~~~~~--g~i~~~~----~~~~~~~~~~--~--~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~-~g-~~~~~~~~ 70 (287)
..||+|+.. ++|+.+. +++.+..... . ..|. .+++++||+ ||+++.. .+..++ . +| ...+....
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~-~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~ 80 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCc-EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee
Confidence 358999854 5787765 4666554332 1 2566 899999997 7777765 787787 4 77 54432211
Q ss_pred CCccccccceEEEcCCCc-EEEEcCC-CCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-ee----ccccccceEEEcc
Q 023085 71 NGSKLRFANDVVEASDGS-LYFTVSS-SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VA----DGFYFANGVALSR 143 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~-l~v~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~----~~~~~~~~i~~~~ 143 (287)
.. ..|..++++++|+ +|+.... +++ ..+..+.........+|.++.+ +++.. +. .....+++++++|
T Consensus 81 ~~---g~~~~~~~spdg~~l~~~~~~~~~~--~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~sp 154 (365)
T 1jof_A 81 IG---GHPRANDADTNTRAIFLLAAKQPPY--AVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDP 154 (365)
T ss_dssp CC---SSGGGGCTTSCCEEEEEEECSSTTC--CEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECT
T ss_pred cC---CCCccEEECCCCCEEEEEEecCCcc--eeccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECC
Confidence 11 1366788999998 3432110 000 0000000000112235555433 44432 21 1345688999999
Q ss_pred CCCEEEEEeCCCCEEEEEEec-CCCCcceeEEeccC-CCCCcceeeCCCCC-EEEEEe
Q 023085 144 DEDYVVVCESWKFRCRKYWLK-GERKGKLETFAENL-PGAPDNINLAPDGT-FWIAII 198 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~~d~~G~-lwv~~~ 198 (287)
||+.+|+++...+.|+.|+++ +++......+.... ...|.+++++++|+ ||++..
T Consensus 155 dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence 999999998877899999986 33322111121111 34588999999995 677764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-10 Score=94.02 Aligned_cols=241 Identities=15% Similarity=0.234 Sum_probs=142.5
Q ss_pred CCCCCcEEEEec-CCeEEEEE--CCceEEEEee-------CCccccCeEECCC----CcEEEEe---CCCceEEEc-cC-
Q 023085 1 MDKNGVIYTATR-DGWIKRLQ--DGTWVNWKFI-------DSQTLVGLTSTKE----GHLIICD---NANGLHKVS-ED- 61 (287)
Q Consensus 1 ~d~~G~l~~~~~-~g~i~~~~--~~~~~~~~~~-------~~~~~~~i~~d~d----g~l~v~~---~~~gi~~~~-~~- 61 (287)
+.++|+||++.. .|+|++++ ++..+.+... ...+. +|+++|+ +.||++- ....|.++. ..
T Consensus 39 ~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~ 117 (347)
T 3das_A 39 PLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEK 117 (347)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTT
T ss_pred EcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEEEEEEecCCCCEEEEEEeCCC
Confidence 357899999997 89999998 4555444322 22356 8999984 8899973 124688886 33
Q ss_pred ----C----cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC--------e
Q 023085 62 ----G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--------I 125 (287)
Q Consensus 62 ----g----~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~ 125 (287)
. .+.+.........+....|+++++|.|||+....-..... . ......+.|+|++++.. .
T Consensus 118 ~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~---q-d~~~~~G~IlRi~~dG~ip~~nPf~~ 193 (347)
T 3das_A 118 KPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS---Q-DRKSLGGKILRMTPDGEPAPGNPFPG 193 (347)
T ss_dssp SCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT---T-CTTCSTTCEEEECTTSSBCTTCSSTT
T ss_pred CcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc---c-CCCCCCCEEEEEeCCCCccCCCCCCC
Confidence 1 2333222222234566789999999999984221000000 0 00123578999998732 1
Q ss_pred eEEeeccccccceEEEccCCCEEEEEeCCCC---EEEEEEecCCCCcce------------eEEeccCC--CCCcceeeC
Q 023085 126 TTLVADGFYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGKL------------ETFAENLP--GAPDNINLA 188 (287)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~---~l~~~~~~~~~~~~~------------~~~~~~~~--~~~~~i~~d 188 (287)
.+.+...+..|.+++++|+|+ ||+++...+ .|.++. .+...+-. .....-.+ ..|.|+++.
T Consensus 194 ~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~ 271 (347)
T 3das_A 194 SPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA 271 (347)
T ss_dssp CCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE
T ss_pred CeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE
Confidence 234566778899999999876 999996543 344443 22111000 00000011 257788887
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE----EEEEECCCCccccceEEE
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI----IRNLVDPTGQLMSFVTSG 264 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~ 264 (287)
+|.+|++... ...|.++..++.. .+.+-. + ....+..+
T Consensus 272 -~g~~~~~~l~----------------------------------~~~l~~v~~~~~~~~~~~e~~l~--~-~~gR~~dv 313 (347)
T 3das_A 272 -EGSVWMAGLR----------------------------------GERLWRIPLKGTAAAADPQAFLE--G-EYGRLRTV 313 (347)
T ss_dssp -TTEEEEEEST----------------------------------TCSEEEEEEETTEESSCCEEEST--T-TSSCEEEE
T ss_pred -cCceeecccc----------------------------------CCEEEEEEecCCceecceEEeec--C-CCCCccEE
Confidence 5889999876 2356666543321 122211 1 12357888
Q ss_pred EEe-CCEEEEEecCC----------CeEEEEeC
Q 023085 265 LQV-DNHLYVISLTS----------NFIGKVQL 286 (287)
Q Consensus 265 ~~~-~g~l~i~~~~~----------~~i~~~~~ 286 (287)
.+. +|.|||++-+. ++|.++.+
T Consensus 314 ~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~ 346 (347)
T 3das_A 314 APAGGDKLWLVTSNTDGRGDAKGGDDRILELEV 346 (347)
T ss_dssp EEEETTEEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred EECCCCcEEEEEcCCCCCCCCCCCCCEEEEEeC
Confidence 876 89999998643 37887754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-09 Score=96.38 Aligned_cols=230 Identities=7% Similarity=-0.074 Sum_probs=145.8
Q ss_pred CCCCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEcc--CCcEEEeeecCCcc
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSE--DGVENFLSYVNGSK 74 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~~--~g~~~~~~~~~~~~ 74 (287)
++++|.+|++. .++.|..++ +++..........+. ++++++||+ ||+++....|..+|. ...+.+.....
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--- 220 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--- 220 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC---
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec---
Confidence 35678888776 567899999 565544433333456 899999995 788876666888884 22222222111
Q ss_pred ccccceEEEcC----CCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc------------ccccc
Q 023085 75 LRFANDVVEAS----DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFAN 137 (287)
Q Consensus 75 ~~~~~~l~~d~----~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~ 137 (287)
...|..+++++ +|. +|+++. ..+.|..+|..+++....... ...+.
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~-----------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEc-----------------cCCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence 23578899999 885 666531 245678888877764432211 11356
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHH
Q 023085 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH 216 (287)
Q Consensus 138 ~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~ 216 (287)
+++++++++.+|++....+.|+.++....+....... .....|.+++++++|+ ++++...
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~----------------- 344 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANN----------------- 344 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGG-----------------
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECCCCCEEEEEecC-----------------
Confidence 7889999998999998889999999865332221122 1234688999999998 5555543
Q ss_pred HHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEE-eCCEEEEEec-CCCeEEEEeCC
Q 023085 217 VLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISL-TSNFIGKVQLS 287 (287)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~-~~~~i~~~~~~ 287 (287)
.+.|..+|.+ ++.+..+.............+.. +++.+|+++. ..+.|.+++++
T Consensus 345 -----------------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 345 -----------------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp -----------------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred -----------------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeC
Confidence 2477788865 66666665421100111222322 3488999875 55799998864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-09 Score=90.76 Aligned_cols=216 Identities=16% Similarity=0.177 Sum_probs=142.6
Q ss_pred CcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeC-CCceEEEc-cCC-cEEEeeecCCccccc
Q 023085 5 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN-ANGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 5 G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~-~~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
+.++++. .++.|..|+ +++..........+. +++++++|+ |+++.. .+.|..++ .++ ....... ...
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~ 75 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----GSS 75 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----SSS
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcc-eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-----CCC
Confidence 3455554 678999999 555544444444566 899999996 556653 35688888 666 3332221 126
Q ss_pred cceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 78 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
+.+++++++|. |+++. ...+.|..+|..+++..........+..++++|+++.+|++....+
T Consensus 76 v~~~~~spdg~~l~~~~-----------------~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 138 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTN-----------------MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK 138 (391)
T ss_dssp EEEEEECTTSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred ccceEECCCCCEEEEEE-----------------CCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCC
Confidence 78899999986 66653 2246899999988876555444456788999999999999988888
Q ss_pred EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 023085 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 235 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (287)
.|..+|+...+. ...+ .....+..++++++|+ ||++... .+
T Consensus 139 ~v~~~d~~~~~~--~~~~--~~~~~~~~~~~~~dg~~l~~~~~~----------------------------------~~ 180 (391)
T 1l0q_A 139 TVSVINTVTKAV--INTV--SVGRSPKGIAVTPDGTKVYVANFD----------------------------------SM 180 (391)
T ss_dssp EEEEEETTTTEE--EEEE--ECCSSEEEEEECTTSSEEEEEETT----------------------------------TT
T ss_pred EEEEEECCCCcE--EEEE--ecCCCcceEEECCCCCEEEEEeCC----------------------------------CC
Confidence 999999754321 1112 1223577899999985 6666554 24
Q ss_pred EEEEECCC-CcEEEEEECCCCccccceEEEEEe--CCEEEEEec--CCCeEEEEeC
Q 023085 236 HLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISL--TSNFIGKVQL 286 (287)
Q Consensus 236 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~--~~~~i~~~~~ 286 (287)
.|..+|.+ ++....+... ..+..+... +..||+++. ..+.|.++|+
T Consensus 181 ~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTVKVE-----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp EEEEEETTTTEEEEEEECS-----SEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred EEEEEECCCCeEEEEEecC-----CCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 77888865 4444444432 134555554 457888876 5677887775
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-09 Score=92.60 Aligned_cols=230 Identities=15% Similarity=0.202 Sum_probs=133.9
Q ss_pred CCCCc-EEEEecC----CeEEEEE---C-CceEEEEee---CCccccCeEECCCC-cEEEEeCCC-ceEEEc-c-CC-cE
Q 023085 2 DKNGV-IYTATRD----GWIKRLQ---D-GTWVNWKFI---DSQTLVGLTSTKEG-HLIICDNAN-GLHKVS-E-DG-VE 64 (287)
Q Consensus 2 d~~G~-l~~~~~~----g~i~~~~---~-~~~~~~~~~---~~~~~~~i~~d~dg-~l~v~~~~~-gi~~~~-~-~g-~~ 64 (287)
+++|. ||+++.+ +.|..|+ + ++.+..... ...|. .+++ +| .||++.... .+..++ . ++ +.
T Consensus 58 spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~ 134 (361)
T 3scy_A 58 SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT--NGKNIVTANYSGGSITVFPIGQDGALL 134 (361)
T ss_dssp CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBC
T ss_pred CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCc
Confidence 57785 8887764 6776665 2 666554332 33555 6777 56 578887553 466666 3 44 32
Q ss_pred EEee--ecCC-------ccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCce--EEEEeCCCC----e-eE
Q 023085 65 NFLS--YVNG-------SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQ--LLKYDPSSN----I-TT 127 (287)
Q Consensus 65 ~~~~--~~~~-------~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~----~-~~ 127 (287)
.+.. ...+ .....+++++++++|+ +|+++.. .+. +|.++..++ + +.
T Consensus 135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 135 PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTCCTTTCCCCE
T ss_pred ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCCCccccccee
Confidence 2211 0011 1123457899999997 7786432 234 445555443 2 21
Q ss_pred -------EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccC--CCCCcceeeCCCCC-EEEEE
Q 023085 128 -------LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL--PGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 128 -------~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~-lwv~~ 197 (287)
........|..++|+|+|+.+|+++...+.|..|++++.+........... ...|.+++++++|+ ||++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence 112334567889999999999999987889999998743322222221111 12356899999997 55655
Q ss_pred eccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcE--EEEEECCCCccccceEEEEEe--CCEEE
Q 023085 198 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI--IRNLVDPTGQLMSFVTSGLQV--DNHLY 272 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~--~g~l~ 272 (287)
... .....++.++++ ++. +..+.. + ..+..+..+ +..||
T Consensus 278 ~~~-------------------------------~~~i~v~~~~~~~g~~~~~~~~~~--g---~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 278 RLK-------------------------------ADGVAIFKVDETNGTLTKVGYQLT--G---IHPRNFIITPNGKYLL 321 (361)
T ss_dssp CSS-------------------------------SCEEEEEEECTTTCCEEEEEEEEC--S---SCCCEEEECTTSCEEE
T ss_pred CCC-------------------------------CCEEEEEEEcCCCCcEEEeeEecC--C---CCCceEEECCCCCEEE
Confidence 430 112356666643 442 333332 2 235566664 45699
Q ss_pred EEecCCCeEEEEeCC
Q 023085 273 VISLTSNFIGKVQLS 287 (287)
Q Consensus 273 i~~~~~~~i~~~~~~ 287 (287)
+++..++.|.+|.++
T Consensus 322 ~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 322 VACRDTNVIQIFERD 336 (361)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEEE
Confidence 999888888886543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-10 Score=98.48 Aligned_cols=168 Identities=12% Similarity=0.123 Sum_probs=114.1
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeC-----CccccCeEECCCCcEEEEeCC-------CceEEEccCC-cEEE
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFID-----SQTLVGLTSTKEGHLIICDNA-------NGLHKVSEDG-VENF 66 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~-----~~~~~~i~~d~dg~l~v~~~~-------~gi~~~~~~g-~~~~ 66 (287)
+++|.+|+++. .+|++++ +++++.+.... ..+. ++++|++|++|+++.. .+|++++ ++ .+.+
T Consensus 98 ~~dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~ 174 (326)
T 2ghs_A 98 ISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKL 174 (326)
T ss_dssp EETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEE
T ss_pred eCCCeEEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEe
Confidence 46899999984 4699999 67766554322 2345 8899999999999742 4699998 77 6554
Q ss_pred eeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC--CC-ee---EEee---cccccc
Q 023085 67 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SN-IT---TLVA---DGFYFA 136 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~---~~~~---~~~~~~ 136 (287)
... ...+++++++++|. +|+++.. .+.|++++.+ ++ ++ ..+. .....|
T Consensus 175 ~~~-----~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p 232 (326)
T 2ghs_A 175 FAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM 232 (326)
T ss_dssp EEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE
T ss_pred eCC-----CcccCCeEEcCCCCEEEEEECC-----------------CCEEEEEEcccccCCcccCceEEEECCCCCCCC
Confidence 322 23578899999985 8886432 4578888864 45 32 1111 123467
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC-CCC-CEEEEEec
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIK 199 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G-~lwv~~~~ 199 (287)
.+++++++|+ +|++...+++|.+|+.++. ....+. .....|.+++++ +++ .||+++..
T Consensus 233 ~gi~~d~~G~-lwva~~~~~~v~~~d~~g~---~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 233 DGSVCDAEGH-IWNARWGEGAVDRYDTDGN---HIARYE-VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEECTTSC-EEEEEETTTEEEEECTTCC---EEEEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CeeEECCCCC-EEEEEeCCCEEEEECCCCC---EEEEEE-CCCCCcEEEEEecCCCCEEEEEecC
Confidence 8999999997 8999877789999986432 122222 112247788887 665 69999876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-09 Score=88.42 Aligned_cols=226 Identities=10% Similarity=0.046 Sum_probs=131.7
Q ss_pred cEEEEec----CCeEEEEE----CCceEEEEe-eCCccccCeEECCCCc-EEEEeCC----Cce--EEEcc-CC-cEEEe
Q 023085 6 VIYTATR----DGWIKRLQ----DGTWVNWKF-IDSQTLVGLTSTKEGH-LIICDNA----NGL--HKVSE-DG-VENFL 67 (287)
Q Consensus 6 ~l~~~~~----~g~i~~~~----~~~~~~~~~-~~~~~~~~i~~d~dg~-l~v~~~~----~gi--~~~~~-~g-~~~~~ 67 (287)
.+|+|+. +++|+.|. +++.+.... ....|. .+++++||+ ||++... ..+ +.++. +| .+.+.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~-~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS-YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC-SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc-eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 6889973 35677665 466554433 345667 899999997 7777652 345 45553 36 65554
Q ss_pred eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeEEee----c----------c
Q 023085 68 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVA----D----------G 132 (287)
Q Consensus 68 ~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~----~----------~ 132 (287)
..... ...|..+++ ....+|+++.. .+.+..++..+ +.+..+. . .
T Consensus 94 ~~~~~--~~~p~~~~~-dg~~l~~~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~ 153 (361)
T 3scy_A 94 TQKTM--GADPCYLTT-NGKNIVTANYS-----------------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQT 153 (361)
T ss_dssp EEECS--SSCEEEEEE-CSSEEEEEETT-----------------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCS
T ss_pred EeccC--CCCcEEEEE-CCCEEEEEECC-----------------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccC
Confidence 32211 235667777 23357776422 34555555432 3222110 0 0
Q ss_pred ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC-------Ccce---eEEeccCCCCCcceeeCCCCC-EEEEEeccc
Q 023085 133 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-------KGKL---ETFAENLPGAPDNINLAPDGT-FWIAIIKLD 201 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~-------~~~~---~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~ 201 (287)
...++.++++|+|+.+|+++...+.+..|+++... +... ..........|.+++++++|+ +|++...
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-- 231 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-- 231 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC--
Confidence 12347799999999999999888899999886432 1111 122212234588899999997 7777643
Q ss_pred hhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE---EEECCCCccccceEEEEEe--CCEEEEEec
Q 023085 202 ARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR---NLVDPTGQLMSFVTSGLQV--DNHLYVISL 276 (287)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~--~g~l~i~~~ 276 (287)
.+.|..++.+...+. .+..... ....+..+..+ +..||+++.
T Consensus 232 --------------------------------~~~v~v~~~~~g~~~~~~~~~~~~~-~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 232 --------------------------------GGTVIAFRYADGMLDEIQTVAADTV-NAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp --------------------------------TCEEEEEEEETTEEEEEEEEESCSS-CCCCEEEEEECTTSSEEEEEEC
T ss_pred --------------------------------CCeEEEEEecCCceEEeEEEecCCC-CCCCcccEEECCCCCEEEEECC
Confidence 235666654433322 2222111 12345666664 456888888
Q ss_pred C-CCeEEEEeCC
Q 023085 277 T-SNFIGKVQLS 287 (287)
Q Consensus 277 ~-~~~i~~~~~~ 287 (287)
. .+.|.+++++
T Consensus 279 ~~~~~i~v~~~~ 290 (361)
T 3scy_A 279 LKADGVAIFKVD 290 (361)
T ss_dssp SSSCEEEEEEEC
T ss_pred CCCCEEEEEEEc
Confidence 7 7888888763
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-09 Score=87.31 Aligned_cols=178 Identities=11% Similarity=0.143 Sum_probs=115.1
Q ss_pred CCcEEEEe-cCCeEEEEE-CCceEEEEeeC--CccccCeEECCCCcEEEEeCC-CceEEEc--cCC-cEEEeeec-C---
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG-VENFLSYV-N--- 71 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~--~~~~~~i~~d~dg~l~v~~~~-~gi~~~~--~~g-~~~~~~~~-~--- 71 (287)
++.||+.+ ..+.|++++ ++++....... ..+. +|+.+++|++|+++.. +.++++. .++ +..+.... .
T Consensus 38 ~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~ 116 (255)
T 3qqz_A 38 SNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQE 116 (255)
T ss_dssp TTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSS
T ss_pred CCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccc
Confidence 35799755 778999999 76665543322 4567 9999999999998644 5677776 333 33222211 1
Q ss_pred CccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEe--CCCCeeEEeec-------cccccceEEE
Q 023085 72 GSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD--PSSNITTLVAD-------GFYFANGVAL 141 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~-------~~~~~~~i~~ 141 (287)
........+|++++++ +||++... ....|+.++ +.+..++.... ....+.++++
T Consensus 117 ~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 117 SPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp CCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred ccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 1112345799999876 89996322 234688887 22222332211 2345789999
Q ss_pred ccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccC------CCCCcceeeCCCCCEEEEEec
Q 023085 142 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL------PGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+|..+.+|+.+..+..|..+|.++.. .......... -.-|.||++|++|+|||++..
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g~~-~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~ 243 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVGEV-IGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP 243 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCE-EEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred cCCCCeEEEEECCCCeEEEEcCCCCE-EEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence 99988999999989999999976531 1111111111 125799999999999999876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-09 Score=89.63 Aligned_cols=214 Identities=13% Similarity=0.044 Sum_probs=132.8
Q ss_pred CCCC-cEEEEe-cCCeEEEEE--CCceEEEEeeCC------ccccCeEECCCC-cEEEEe------------CCCceEEE
Q 023085 2 DKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFIDS------QTLVGLTSTKEG-HLIICD------------NANGLHKV 58 (287)
Q Consensus 2 d~~G-~l~~~~-~~g~i~~~~--~~~~~~~~~~~~------~~~~~i~~d~dg-~l~v~~------------~~~gi~~~ 58 (287)
+++| .+|++. .++.|..++ +++......... .+. +++++++| .||++. ....|.++
T Consensus 42 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 42 APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence 5677 577776 567899999 555543322222 566 89999999 577774 23578889
Q ss_pred c-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc
Q 023085 59 S-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 135 (287)
Q Consensus 59 ~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 135 (287)
+ .++ ....... ...+.+++++++|. ++++ .+.|+.+|..+++..........
T Consensus 121 d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~--------------------~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 121 DAETLSRRKAFEA-----PRQITMLAWARDGSKLYGL--------------------GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp ETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEE--------------------SSSEEEEETTTTEEEEEECSTTT
T ss_pred ECCCCcEEEEEeC-----CCCcceeEECCCCCEEEEe--------------------CCeEEEEECCCCcEeeeeecccc
Confidence 8 566 3322221 13577899999986 7774 34688899887776543332222
Q ss_pred cceEEEccCCCEEEEEeCCCC-----------------------EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 136 ANGVALSRDEDYVVVCESWKF-----------------------RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 136 ~~~i~~~~~~~~l~v~~~~~~-----------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
+..+.++|+++.+|++....+ .|+.+|....+.. ...+ ......|.+++++++|+
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECSSCEEEEEECTTSS
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCCCceeeEEECCCCC
Confidence 334467888887777665444 3567776543222 1111 12223567899999986
Q ss_pred -EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe--C
Q 023085 193 -FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--D 268 (287)
Q Consensus 193 -lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~ 268 (287)
+|++ .. .|..++.+ ++.+..+.... .+..+... +
T Consensus 254 ~l~~~-~~------------------------------------~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg 291 (337)
T 1pby_B 254 RAFGA-YN------------------------------------VLESFDLEKNASIKRVPLPH-----SYYSVNVSTDG 291 (337)
T ss_dssp EEEEE-ES------------------------------------EEEEEETTTTEEEEEEECSS-----CCCEEEECTTS
T ss_pred EEEEe-CC------------------------------------eEEEEECCCCcCcceecCCC-----ceeeEEECCCC
Confidence 5655 32 78888876 55556665422 24455554 4
Q ss_pred CEEEEEecCCCeEEEEeC
Q 023085 269 NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 269 g~l~i~~~~~~~i~~~~~ 286 (287)
..||+++ ..+.|.++++
T Consensus 292 ~~l~~~~-~~~~i~v~d~ 308 (337)
T 1pby_B 292 STVWLGG-ALGDLAAYDA 308 (337)
T ss_dssp CEEEEES-BSSEEEEEET
T ss_pred CEEEEEc-CCCcEEEEEC
Confidence 5688874 4678888876
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-08 Score=88.63 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=149.3
Q ss_pred CCCcEEEEe-cCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCCcc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~ 74 (287)
++|.+|++. .++.|..|+ +++... +......+. .++++++|+ ++++... +.|.+++ .++ .......
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~----- 252 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK-ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK----- 252 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE-EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----
T ss_pred CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee-EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----
Confidence 467777665 678999999 444433 222234455 889999996 5566533 4588888 666 3222111
Q ss_pred ccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+.+++++++|. ++++...... .....+.|+.+|+.+++..........+..++++|+++.+|++..
T Consensus 253 ~~~~~~~~~~~~g~~l~~~~~~~~~----------~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 253 IGLPRGLLLSKDGKELYIAQFSASN----------QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp CSEEEEEEECTTSSEEEEEEEESCT----------TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred CCCceEEEEcCCCCEEEEEECCCCc----------cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec
Confidence 13478899999985 5554211000 001256899999887776554433346778999999999999988
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
..+.|..|+.++.+. ...+ .....+..++++++|+ ||+++.... .. ....+..+.
T Consensus 323 ~~~~v~v~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~-~~-------------------~~~~~~~g~ 378 (433)
T 3bws_A 323 CCSKIEVYDLKEKKV--QKSI--PVFDKPNTIALSPDGKYLYVSCRGPN-HP-------------------TEGYLKKGL 378 (433)
T ss_dssp TTTEEEEEETTTTEE--EEEE--ECSSSEEEEEECTTSSEEEEEECCCC-CT-------------------TTCTTSCCS
T ss_pred CCCEEEEEECCCCcE--EEEe--cCCCCCCeEEEcCCCCEEEEEecCCC-cc-------------------ccccccccc
Confidence 889999999764321 1122 1234578899999996 777765310 00 000011122
Q ss_pred CceEEEEECCC-CcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 023085 233 GGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 233 ~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~~ 287 (287)
..+.|..++.+ ++.+..+... ..+..+... +..|++++...+.|.+++++
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEAG-----NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cceEEEEEECCCCcEEEEecCC-----CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 34688899865 6666666642 245666664 45788887778899998864
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-08 Score=83.10 Aligned_cols=194 Identities=11% Similarity=0.094 Sum_probs=127.1
Q ss_pred ccccCeEECCCC-cEEEEe-CCCceEEEccCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeee
Q 023085 33 QTLVGLTSTKEG-HLIICD-NANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 108 (287)
Q Consensus 33 ~~~~~i~~d~dg-~l~v~~-~~~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~ 108 (287)
++. ++++++++ +||+.. ....|+.++.+| ...+ +. .+ ...+.+|+++.+|.+|+++..
T Consensus 28 ~lS-Gla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i-~l-~g--~~D~EGIa~~~~g~~~vs~E~------------- 89 (255)
T 3qqz_A 28 NIS-SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTI-PL-DF--VKDLETIEYIGDNQFVISDER------------- 89 (255)
T ss_dssp CEE-EEEEETTTTEEEEEEETTEEEEEEETTCCEEEEE-EC-SS--CSSEEEEEECSTTEEEEEETT-------------
T ss_pred Ccc-eeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEE-ec-CC--CCChHHeEEeCCCEEEEEECC-------------
Confidence 445 89999865 799864 435699999557 3333 21 11 246789999999999997432
Q ss_pred ccCCCceEEEEeCCC-CeeE---Eeeccc-cc-----cceEEEccCCCEEEEEeCCCC-EEEEEEecCC-CCcceeEEec
Q 023085 109 EGKPHGQLLKYDPSS-NITT---LVADGF-YF-----ANGVALSRDEDYVVVCESWKF-RCRKYWLKGE-RKGKLETFAE 176 (287)
Q Consensus 109 ~~~~~~~v~~~~~~~-~~~~---~~~~~~-~~-----~~~i~~~~~~~~l~v~~~~~~-~l~~~~~~~~-~~~~~~~~~~ 176 (287)
.+.++.++... +.+. ....++ .. ..|++++|+++.||++..... +|+.++ +. ..........
T Consensus 90 ----~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 90 ----DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKD 163 (255)
T ss_dssp ----TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEEC
T ss_pred ----CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecc
Confidence 34555554321 2211 111111 12 379999999988999887655 778877 21 0011111110
Q ss_pred ------cCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE
Q 023085 177 ------NLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN 249 (287)
Q Consensus 177 ------~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 249 (287)
.....+.++++|+ .|++|+.+.. ...|+.+|++|+.+..
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~----------------------------------s~~L~~~d~~g~~~~~ 209 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHE----------------------------------SRALQEVTLVGEVIGE 209 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETT----------------------------------TTEEEEECTTCCEEEE
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECC----------------------------------CCeEEEEcCCCCEEEE
Confidence 0112478899998 5789999887 2489999999998888
Q ss_pred EECCCCc-----cccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 250 LVDPTGQ-----LMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 250 ~~~~~~~-----~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
+....+. .+..+.+++++ +|+|||.+ ..|.+++|.
T Consensus 210 ~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n~~y~f~ 250 (255)
T 3qqz_A 210 MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRFT 250 (255)
T ss_dssp EECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTTEEEEEE
T ss_pred EEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCceEEEEE
Confidence 8776442 24678999998 69999995 667888875
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-09 Score=92.41 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=99.8
Q ss_pred eEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEccCC-cE-EEeeec--CCccccccceEEEcC----CCcEEEEcC
Q 023085 24 WVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSEDG-VE-NFLSYV--NGSKLRFANDVVEAS----DGSLYFTVS 94 (287)
Q Consensus 24 ~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~~~g-~~-~~~~~~--~~~~~~~~~~l~~d~----~g~l~v~~~ 94 (287)
.+.+......|. +|+++++|+ |||++....|++++.+| .. .+.... .......+.+|++++ ++.||+++.
T Consensus 10 ~~~va~~l~~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 10 VEVLQDKLDHPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp EEEEEEEESSEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred EEEEECCCCCcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 344445456788 999999999 99999776788888666 33 222111 011123568899998 589999743
Q ss_pred CCCCCCcceeeeeeccCCCceEEEEeCCCC--e---eEEeec-------cccccceEEEccCCCEEEEEeCC--------
Q 023085 95 SSKYLPHEYCLDILEGKPHGQLLKYDPSSN--I---TTLVAD-------GFYFANGVALSRDEDYVVVCESW-------- 154 (287)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~---~~~~~~-------~~~~~~~i~~~~~~~~l~v~~~~-------- 154 (287)
.... .+.....|.+++.+.+ . .+.+.. ....+.+++++||| .||++.-.
T Consensus 89 ~~~~----------~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q 157 (353)
T 2g8s_A 89 EVGD----------DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQ 157 (353)
T ss_dssp EECS----------SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGG
T ss_pred CCCC----------CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccC
Confidence 2000 0000235777765322 2 222211 12346789999999 59999632
Q ss_pred -----CCEEEEEEecCCCC----------cceeEEeccCCCCCcceeeCC-CCCEEEEEec
Q 023085 155 -----KFRCRKYWLKGERK----------GKLETFAENLPGAPDNINLAP-DGTFWIAIIK 199 (287)
Q Consensus 155 -----~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~ 199 (287)
.++|++++.++... ...+.+.... ..|.++++|+ +|+||++...
T Consensus 158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecC
Confidence 35899999865210 0223333211 2489999999 8999999876
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-08 Score=81.48 Aligned_cols=191 Identities=11% Similarity=0.104 Sum_probs=122.5
Q ss_pred ccCeEECCCCcEEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 35 LVGLTSTKEGHLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
. |+.++ ++.||+++... .|.++| .+| +..-.... +..+..+++++ .++||+++.
T Consensus 46 q-GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~-g~~ly~ltw--------------- 104 (262)
T 3nol_A 46 E-GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDW-KDKIVGLTW--------------- 104 (262)
T ss_dssp E-EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEE-TTEEEEEES---------------
T ss_pred c-eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEe-CCEEEEEEe---------------
Confidence 5 88888 78999997543 589999 777 33322221 11234556766 458999632
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCc-ceeEEeccCC-CCCcceee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG-KLETFAENLP-GAPDNINL 187 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~~ 187 (287)
..+.++.+|+++.++..-... .+.|..+++|++.||+++. .++|+.+|.++.+.. +........+ ..++.+..
T Consensus 105 --~~~~v~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 105 --KNGLGFVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp --SSSEEEEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred --eCCEEEEEECccCcEEEEEEC--CCCceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 256899999987765432221 1255555577888999984 788999997643221 1111110011 22344565
Q ss_pred CCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCc--------cc
Q 023085 188 APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQ--------LM 258 (287)
Q Consensus 188 d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~--------~~ 258 (287)
. +|.||+..+. ...|.++||+ |+.+..+..+... ..
T Consensus 180 ~-~G~lyan~w~----------------------------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~ 224 (262)
T 3nol_A 180 V-DGEIFANVWQ----------------------------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI 224 (262)
T ss_dssp E-TTEEEEEETT----------------------------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC
T ss_pred E-CCEEEEEEcc----------------------------------CCeEEEEECCCCcEEEEEECCcCccccccccCcC
Confidence 5 7899998876 3589999986 7888888764211 12
Q ss_pred cceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 259 SFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 259 ~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
+.+.+++.+ .++|||++..=+.+..+.|
T Consensus 225 ~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 225 DVLNGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp CCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 345777776 4899999999888877654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-08 Score=86.99 Aligned_cols=219 Identities=12% Similarity=0.076 Sum_probs=141.3
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEEEEee------CCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEee
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFI------DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLS 68 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~------~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~ 68 (287)
++++.++++. .++.|..|+ +++....... ..... ++++.++|++|++... ..|.+++ .++ ...+..
T Consensus 131 s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~ 209 (433)
T 3bws_A 131 IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE-TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL 209 (433)
T ss_dssp SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE-EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC
T ss_pred eCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee-EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC
Confidence 3467788776 456799999 4555432211 11233 6888899999888655 4588888 555 333321
Q ss_pred ecCCccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCE
Q 023085 69 YVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 147 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 147 (287)
....+.+++++++|.. +++. ...+.|..+|..+++..........+.+++++|+++.
T Consensus 210 -----~~~~~~~~~~~~~~~~l~~~~-----------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 210 -----TGKWSKILLYDPIRDLVYCSN-----------------WISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKE 267 (433)
T ss_dssp -----SSSSEEEEEEETTTTEEEEEE-----------------TTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSE
T ss_pred -----CCCCeeEEEEcCCCCEEEEEe-----------------cCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCE
Confidence 1236788999998864 4542 2356899999887776554444456788999999998
Q ss_pred EEEEeC-------CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHH
Q 023085 148 VVVCES-------WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLA 219 (287)
Q Consensus 148 l~v~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~ 219 (287)
++++.. ..+.|..|++...+. .... ...+.+.+++++++|+ +|++...
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~-------------------- 323 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKL--IDTI--GPPGNKRHIVSGNTENKIYVSDMC-------------------- 323 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEE--EEEE--EEEECEEEEEECSSTTEEEEEETT--------------------
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcE--Eeec--cCCCCcceEEECCCCCEEEEEecC--------------------
Confidence 888874 345788999764321 1111 1122577899999985 7777654
Q ss_pred hCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCC--------------eEE
Q 023085 220 AYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSN--------------FIG 282 (287)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~--------------~i~ 282 (287)
.+.|..++.+ ++....+... ..+..+... +..||+++...+ .|.
T Consensus 324 --------------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 324 --------------CSKIEVYDLKEKKVQKSIPVF-----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp --------------TTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred --------------CCEEEEEECCCCcEEEEecCC-----CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence 3578888876 5555555532 235566664 356888887643 777
Q ss_pred EEeC
Q 023085 283 KVQL 286 (287)
Q Consensus 283 ~~~~ 286 (287)
++|+
T Consensus 385 ~~d~ 388 (433)
T 3bws_A 385 VIDT 388 (433)
T ss_dssp EEET
T ss_pred EEEC
Confidence 7775
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-08 Score=91.44 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=138.8
Q ss_pred CCCCC-cEEEEecCCeEEEEEC--CceE--EEEeeCCccccCeEECC----CCc-EEEEeC-CCceEEEc-cCC--cEEE
Q 023085 1 MDKNG-VIYTATRDGWIKRLQD--GTWV--NWKFIDSQTLVGLTSTK----EGH-LIICDN-ANGLHKVS-EDG--VENF 66 (287)
Q Consensus 1 ~d~~G-~l~~~~~~g~i~~~~~--~~~~--~~~~~~~~~~~~i~~d~----dg~-l~v~~~-~~gi~~~~-~~g--~~~~ 66 (287)
++++| .||+++.++.|..|+- ...+ ........|. ++++++ ||+ ||++.. ...|..+| .++ +..+
T Consensus 186 ~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 186 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence 35677 6889888899999992 3322 2223345677 899999 995 788864 35688888 666 3333
Q ss_pred eeec---CC---ccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE--eeccccccc
Q 023085 67 LSYV---NG---SKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFAN 137 (287)
Q Consensus 67 ~~~~---~~---~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~ 137 (287)
.... .. .+...+.++++++++.. +++. ...+.|+.+|..+.+... .......+.
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-----------------~~~g~i~vvd~~~~~~l~~~~i~~~~~~~ 327 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-----------------KETGKVLLVNYKDIDNLTVTSIGAAPFLH 327 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-----------------TTTTEEEEEECTTSSSCEEEEEECCSSCC
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEE-----------------CCCCeEEEEEecCCCcceeEEeccCcCcc
Confidence 2210 00 01225678888887654 4432 235688888876543211 112345688
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCC-ccee-eCCC-CCEEEEEeccchhHHHHhhcchhH
Q 023085 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP-DNIN-LAPD-GTFWIAIIKLDARRMKILNSSKLI 214 (287)
Q Consensus 138 ~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~d~~-G~lwv~~~~~~~~~~~~~~~~~~~ 214 (287)
+++|+|+++++|++....+.|..+|.+..+.. ..+.......| .+.. .+++ |.+|++....
T Consensus 328 ~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~--~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~-------------- 391 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS--ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG-------------- 391 (543)
T ss_dssp CEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSBCCTTCEEEEETTTEEEEEEEBSS--------------
T ss_pred CceECCCCCEEEEEecCCCeEEEEECCCCeEE--EeeccCCCCCCCCCcccCCCCCccEEEeccCC--------------
Confidence 99999999999999888889999997643221 11111111112 2333 3666 7899887531
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCC--------CcEEEEEECCCCccccceEEEEE--eCCEEEEEecC------C
Q 023085 215 KHVLAAYPKLFSQFITLGGGAHLIHVAED--------GTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLT------S 278 (287)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~------~ 278 (287)
.+.|..++.+ .+.++.+....+ .+..+.. ++.+||+++.. +
T Consensus 392 -------------------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~----~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 392 -------------------DGSISLIGTDPKNHPQYAWKKVAELQGQGG----GSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp -------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCS----CCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred -------------------CceEEEEEeCCCCCchhcCeEEEEEEcCCC----CceEEEcCCCCCcEEEecCCCCCcccC
Confidence 1345555432 467777775332 2233333 46889998742 4
Q ss_pred CeEEEEeCC
Q 023085 279 NFIGKVQLS 287 (287)
Q Consensus 279 ~~i~~~~~~ 287 (287)
+.|.++|++
T Consensus 449 ~~v~v~d~~ 457 (543)
T 1nir_A 449 QSVAVFDLK 457 (543)
T ss_dssp TCEEEEETT
T ss_pred ceEEEEECC
Confidence 489998864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-08 Score=80.63 Aligned_cols=150 Identities=11% Similarity=-0.012 Sum_probs=94.8
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCC---ccccCeEECCCC-cEEEEeCC-CceEEEc-cCC-c-EEEeeecCCccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDS---QTLVGLTSTKEG-HLIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~---~~~~~i~~d~dg-~l~v~~~~-~gi~~~~-~~g-~-~~~~~~~~~~~~ 75 (287)
.|..+..++.|..++ +++......... .|. +++++++| .+|++... ..|.+++ .++ . ..+.....+...
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 355566889999999 555544444444 577 99999999 57787654 4588898 666 3 333211111111
Q ss_pred cccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..|.+++++++| .+|+++...... ..+. ....+.|+.+|..+++..........+.+++++|+++.+|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~-~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLE-LTHF-----EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEEC-SSCE-----EECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE---
T ss_pred ccccceEECCCCCEEEEEecccccc-cccc-----cccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe---
Confidence 257889999998 567753110000 0000 002467999999877765443334567889999999989998
Q ss_pred CCEEEEEEecC
Q 023085 155 KFRCRKYWLKG 165 (287)
Q Consensus 155 ~~~l~~~~~~~ 165 (287)
++.|+.+++++
T Consensus 153 ~~~i~~~d~~~ 163 (337)
T 1pby_B 153 GRDLHVMDPEA 163 (337)
T ss_dssp SSSEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 35799999764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-07 Score=85.65 Aligned_cols=227 Identities=9% Similarity=-0.055 Sum_probs=139.9
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-c--CCcEEEeeecCCcc
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-E--DGVENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~--~g~~~~~~~~~~~~ 74 (287)
|..+.+|+.. .++.|..+| +++..........|. ++++++||+ +|++.....|..+| . ++ +.+.....+
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G-- 239 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG-- 239 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC--
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC--
Confidence 3344677766 568899999 555554444555677 899999995 78887656799999 4 33 222221112
Q ss_pred ccccceEEEc----CCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccc-----------cccc
Q 023085 75 LRFANDVVEA----SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGF-----------YFAN 137 (287)
Q Consensus 75 ~~~~~~l~~d----~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~-----------~~~~ 137 (287)
..|..++++ ++| .+|+++.. .+.|..+|..+.+.... .... ....
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred -CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 357889999 588 57776422 46788888877664432 1110 1234
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHH
Q 023085 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH 216 (287)
Q Consensus 138 ~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~ 216 (287)
++..++++..+++.....+.|+.+|....+......+ .....+.++.+|++|+ +|+++..
T Consensus 302 ~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~----------------- 362 (567)
T 1qks_A 302 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA----------------- 362 (567)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG-----------------
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCC-----------------
Confidence 6777888887888877778999999754321111111 1223577889999997 4555544
Q ss_pred HHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCcccc--ceEEEEEe-CCEEEEEec-CCCeEEEEeCC
Q 023085 217 VLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMS--FVTSGLQV-DNHLYVISL-TSNFIGKVQLS 287 (287)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~--~~~~~~~~-~g~l~i~~~-~~~~i~~~~~~ 287 (287)
.+.|..+|.+ ++....+..- +.... ....+... .+.+|+++. ..+.|.+++.+
T Consensus 363 -----------------sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 363 -----------------RNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp -----------------GTEEEEEETTTTEEEEEEECS-SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred -----------------CCeEEEEECCCCcEEEEEecc-CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 2478889876 5555555430 22111 11223222 488998775 45899999864
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-08 Score=83.05 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=98.5
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
.+.||+++ .++.+..+| +.+........ .+. +..+.+|| +||+++..+.|..+| .+. ...+.-...+.+..
T Consensus 75 g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 75 NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVI 152 (266)
T ss_dssp TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence 35899999 578899999 34333322223 344 55555566 799998556799999 554 44443232334555
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--cc------------cccceEEEc
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GF------------YFANGVALS 142 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~------------~~~~~i~~~ 142 (287)
.++.+.+. +|.+|+.+.. .+.|.++|+.++++..... .. ..++||+++
T Consensus 153 ~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 153 RLNELEYI-NGEVWANIWQ-----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp CEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred cceeEEEE-CCEEEEecCC-----------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence 68888877 7899996422 4689999999888644321 11 356999999
Q ss_pred cCCCEEEEEeCCCCEEEEEEecC
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
|+++.+||+....++|+.+++..
T Consensus 215 ~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 215 QENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCeEEEEEEec
Confidence 99999999998889999988753
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-09 Score=87.07 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=103.2
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-cc-------ccccceEEE---c
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-------FYFANGVAL---S 142 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~-------~~~~~~i~~---~ 142 (287)
...|.+...|. +|.+|+++.. .+.|.+++++++....+. .. ...+.|+.+ +
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~-----------------~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D 74 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLY-----------------KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHD 74 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETT-----------------TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSS
T ss_pred ccCCcCccCcCCCCEEEEEecc-----------------CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccC
Confidence 34788899976 6899998533 578999999855443332 22 124689999 7
Q ss_pred cCCCEEEE-EeC------------CCCEEEEEEec---CCCCcceeEE---ecc-------CCCCCcceeeCCCCCEEEE
Q 023085 143 RDEDYVVV-CES------------WKFRCRKYWLK---GERKGKLETF---AEN-------LPGAPDNINLAPDGTFWIA 196 (287)
Q Consensus 143 ~~~~~l~v-~~~------------~~~~l~~~~~~---~~~~~~~~~~---~~~-------~~~~~~~i~~d~~G~lwv~ 196 (287)
++++ ||+ ++. ....|.+||++ +.+......+ ... ..+.++++++|++|++||+
T Consensus 75 ~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 75 NSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 8865 666 442 24679999987 2221111110 000 1124789999999999997
Q ss_pred EeccchhHHHHhhcchhHHHHHHhCCccccccccCCCc-eEEEEECCCCcEEEEEEC--CCCccccceEEEEEe-CC-EE
Q 023085 197 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG-AHLIHVAEDGTIIRNLVD--PTGQLMSFVTSGLQV-DN-HL 271 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~-~g-~l 271 (287)
... . +.|+|++|+|+.+..+.. +.........++... +| .|
T Consensus 154 ~s~----------------------------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~L 199 (334)
T 2p9w_A 154 FAL----------------------------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKL 199 (334)
T ss_dssp EEE----------------------------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEE
T ss_pred CCC----------------------------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEE
Confidence 665 2 589999999986554432 222222345677766 44 56
Q ss_pred EEEecCCCeEEEEeCC
Q 023085 272 YVISLTSNFIGKVQLS 287 (287)
Q Consensus 272 ~i~~~~~~~i~~~~~~ 287 (287)
++... ..+|.+||+.
T Consensus 200 iv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 200 IAFGG-PRALTAFDVS 214 (334)
T ss_dssp EEESS-SSSEEEEECS
T ss_pred EEEcC-CCeEEEEcCC
Confidence 66666 8999999863
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-07 Score=83.52 Aligned_cols=233 Identities=10% Similarity=-0.003 Sum_probs=129.9
Q ss_pred cEEEEecC-----CeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeC----------CCceEEEc-cCC--cE
Q 023085 6 VIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN----------ANGLHKVS-EDG--VE 64 (287)
Q Consensus 6 ~l~~~~~~-----g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~----------~~gi~~~~-~~g--~~ 64 (287)
.+|+.+.. +.|..+| +++..........| ++++++|| +||+++. .+.|..+| .++ ..
T Consensus 86 ~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~ 163 (426)
T 3c75_H 86 RVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA 163 (426)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred EEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence 68998853 6899999 55555444455555 89999999 5999974 23589999 666 33
Q ss_pred EEeee-cC-CccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eecc---ccccc
Q 023085 65 NFLSY-VN-GSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG---FYFAN 137 (287)
Q Consensus 65 ~~~~~-~~-~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---~~~~~ 137 (287)
.+.-. .. ......|..++++++| .+|+++.. ..+.|..+|..++++.. +.-+ ...|.
T Consensus 164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~~p~ 227 (426)
T 3c75_H 164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHIFPA 227 (426)
T ss_dssp EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceeeccC
Confidence 33211 00 0012468899999998 58887532 12345555555444321 1100 00111
Q ss_pred -----------------------------------------eEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEe-
Q 023085 138 -----------------------------------------GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA- 175 (287)
Q Consensus 138 -----------------------------------------~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~- 175 (287)
.+.++++++.+|+... .++++.+|..+....-...+.
T Consensus 228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEES
T ss_pred CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeeee
Confidence 1234555555555543 456667766432111000000
Q ss_pred -c-------cCCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-Cc
Q 023085 176 -E-------NLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GT 245 (287)
Q Consensus 176 -~-------~~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~ 245 (287)
. ..+.....++++++| ++|++....... ......+.|..+|.+ .+
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g-------------------------thk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW-------------------------KHKAASRFVVVLNAETGE 361 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT-------------------------CTTSCEEEEEEEETTTCC
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccc-------------------------cccCCCCEEEEEECCCCe
Confidence 0 001112338888875 689987531000 000013579999976 66
Q ss_pred EEEEEECCCCccccceEEEEEe--CC-EEEEEecCCCeEEEEeCC
Q 023085 246 IIRNLVDPTGQLMSFVTSGLQV--DN-HLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~--~g-~l~i~~~~~~~i~~~~~~ 287 (287)
.+..+.... .+.++.+. +. +||+++..++.|.++|+.
T Consensus 362 vv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 362 RINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 777776432 35556554 45 688888889999999963
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-08 Score=80.50 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=121.1
Q ss_pred CeEECCCCcEEEEeCCC-ceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~-gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
++.++ +++||+++... .|.++| .+| ...+ .. . ..+..+++++ .++||+++. .
T Consensus 59 GL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~-~--~~FgeGit~~-g~~Ly~ltw-----------------~ 114 (268)
T 3nok_A 59 GLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RL-G--NIFAEGLASD-GERLYQLTW-----------------T 114 (268)
T ss_dssp EEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--EC-T--TCCEEEEEEC-SSCEEEEES-----------------S
T ss_pred eEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CC-C--CcceeEEEEe-CCEEEEEEc-----------------c
Confidence 77777 57999998664 478888 777 4443 21 1 1233557776 458999631 3
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC---CCCcceeeCC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP---GAPDNINLAP 189 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~ 189 (287)
.+.++.+|+++.++..-... .+.|..+.+|++.||+++ ..++|+.+|.++.+... ..-+...+ ..++.+...
T Consensus 115 ~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~-~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG-AVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp SCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE-EEECEETTEECCCEEEEEEE-
T ss_pred CCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE-EEEeCCCCcccccccccEEe-
Confidence 56899999988775432222 234444457788999998 57899999976432211 11111111 123445554
Q ss_pred CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCC---------cccc
Q 023085 190 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTG---------QLMS 259 (287)
Q Consensus 190 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~---------~~~~ 259 (287)
+|.||+..+. ...|.++||+ |+.+..+....- ...+
T Consensus 190 dG~lyanvw~----------------------------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 190 NGVIYANIWH----------------------------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp TTEEEEEETT----------------------------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred CCEEEEEECC----------------------------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence 8899988876 3589999986 778887764310 0123
Q ss_pred ceEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 023085 260 FVTSGLQV--DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 260 ~~~~~~~~--~g~l~i~~~~~~~i~~~~~~ 287 (287)
...+++.+ .++|||++..=+.+..+.|+
T Consensus 236 vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~~ 265 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTGKLWPRLFEVRLD 265 (268)
T ss_dssp CEEEEEECTTTCCEEEEETTCSEEEEEEEE
T ss_pred ceEEEEEcCCCCEEEEeCCCCCceEEEEEE
Confidence 55777776 58999999998888877653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-08 Score=83.93 Aligned_cols=215 Identities=13% Similarity=0.141 Sum_probs=123.6
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCcc--cccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSK--LRFA 78 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~--~~~~ 78 (287)
+|.||+++.++.|+.++ +|+................+ .++.+|+++...+++.++ .+|............ ....
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 57899999999999999 57764333333222212333 378999998766799999 678222211111111 0111
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc-----------c-ceEEEccCCC
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-----------A-NGVALSRDED 146 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~-~~i~~~~~~~ 146 (287)
...+++ ++.+|+. ...+.|+.+|+++|+.......... . ...++ .+.
T Consensus 182 ~~~~~~-~~~v~~g------------------~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~ 240 (376)
T 3q7m_A 182 SAPTTA-FGAAVVG------------------GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNG 240 (376)
T ss_dssp CCCEEE-TTEEEEC------------------CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETT
T ss_pred CCcEEE-CCEEEEE------------------cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECC
Confidence 222333 6788883 3356799999887876543221100 0 11112 244
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
.+|+... .+.|++++..+++.. +.... +....++.+ +++||+++..
T Consensus 241 ~v~~~~~-~g~l~~~d~~tG~~~----w~~~~-~~~~~~~~~-~~~l~~~~~~--------------------------- 286 (376)
T 3q7m_A 241 VVFALAY-NGNLTALDLRSGQIM----WKREL-GSVNDFIVD-GNRIYLVDQN--------------------------- 286 (376)
T ss_dssp EEEEECT-TSCEEEEETTTCCEE----EEECC-CCEEEEEEE-TTEEEEEETT---------------------------
T ss_pred EEEEEec-CcEEEEEECCCCcEE----eeccC-CCCCCceEE-CCEEEEEcCC---------------------------
Confidence 5888763 567999997543211 11111 123345554 6789999875
Q ss_pred ccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 227 QFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|+.+|++ |+.++....... .........+++||+++.. +.|.++|.
T Consensus 287 --------g~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~l~v~~~~-g~l~~~d~ 335 (376)
T 3q7m_A 287 --------DRVMALTIDGGVTLWTQSDLLH---RLLTSPVLYNGNLVVGDSE-GYLHWINV 335 (376)
T ss_dssp --------CCEEEEETTTCCEEEEECTTTT---SCCCCCEEETTEEEEECTT-SEEEEEET
T ss_pred --------CeEEEEECCCCcEEEeecccCC---CcccCCEEECCEEEEEeCC-CeEEEEEC
Confidence 578999974 777777653222 1233444568999999864 46777664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.2e-09 Score=91.72 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=106.2
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee---ccc------cccceEEEccC-
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGF------YFANGVALSRD- 144 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~------~~~~~i~~~~~- 144 (287)
+..|.+|+++++|+|||++.. .+.|+++++.+++...+. ... ..+.+++++|+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf 88 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF 88 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred CCCceEEEEcCCCcEEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCc
Confidence 467899999999999997422 246999987656554432 111 23348999997
Q ss_pred --CCEEEEEeCC------------CCEEEEEEecCC--CCcceeEEeccCC----CCCcceeeCCCCCEEEEEeccchhH
Q 023085 145 --EDYVVVCESW------------KFRCRKYWLKGE--RKGKLETFAENLP----GAPDNINLAPDGTFWIAIIKLDARR 204 (287)
Q Consensus 145 --~~~l~v~~~~------------~~~l~~~~~~~~--~~~~~~~~~~~~~----~~~~~i~~d~~G~lwv~~~~~~~~~ 204 (287)
++.||++.+. ..+|.+++.+.. ++...+.+....+ ..+.+|++++||+||++.....+..
T Consensus 89 ~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~ 168 (454)
T 1cru_A 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQ 168 (454)
T ss_dssp TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTS
T ss_pred CcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCC
Confidence 7789999863 357999987642 2223333332111 2467899999999999986532110
Q ss_pred HHHhhc------chhHHHHHHhCCccccccccCCCceEEEEECCCCc-----------EEEEEECCCCccccceEEEEEe
Q 023085 205 MKILNS------SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT-----------IIRNLVDPTGQLMSFVTSGLQV 267 (287)
Q Consensus 205 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
....+. .|.......+. .....++|.|++++|+ ..+.+.. | ..++..++++
T Consensus 169 ~~~~~~~~~~~~~p~~~~~~aq~--------~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~--G--~RNp~gla~d 236 (454)
T 1cru_A 169 LAYLFLPNQAQHTPTQQELNGKD--------YHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGLAFT 236 (454)
T ss_dssp GGGTTSCCCTTCCCCHHHHHTTC--------CTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEEEEC
T ss_pred ccccccccccccccccccccccC--------CCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE--C--CCCcceEEEC
Confidence 000000 00000000000 0112579999999987 3344442 3 3467888887
Q ss_pred -CCEEEEEecCCC
Q 023085 268 -DNHLYVISLTSN 279 (287)
Q Consensus 268 -~g~l~i~~~~~~ 279 (287)
+|+||++....+
T Consensus 237 p~G~L~~~d~g~~ 249 (454)
T 1cru_A 237 PNGKLLQSEQGPN 249 (454)
T ss_dssp TTSCEEEEEECSS
T ss_pred CCCCEEEEecCCC
Confidence 699999997543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-07 Score=79.64 Aligned_cols=153 Identities=11% Similarity=0.033 Sum_probs=89.7
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEEEEeeCC--ccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecC-
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVN- 71 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~--~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~- 71 (287)
..++.+|++. .++.|..++ +++......... .+. .++++++|+ +|++... ..|.+++ .++ .........
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 4567777765 788999999 555544433333 466 899999996 7777644 4588898 666 332222111
Q ss_pred -CccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE---eeccccccceEEEccCCC
Q 023085 72 -GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDED 146 (287)
Q Consensus 72 -~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~ 146 (287)
......|.+++++++|. ++++..........+ ....+.|+.+|..+++... .......+.+++++|+++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE------EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred cccccccccceEECCCCCEEEEEccccccccccc------ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 00123478899999986 555431100000000 0113578889877643221 111222467788999999
Q ss_pred EEEEEeCCCCEEEEEEecC
Q 023085 147 YVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~ 165 (287)
+|+.. ..|+.+|...
T Consensus 161 -l~~~~---~~i~~~d~~~ 175 (349)
T 1jmx_B 161 -LYVAG---PDIYKMDVKT 175 (349)
T ss_dssp -EEEES---SSEEEECTTT
T ss_pred -EEEcc---CcEEEEeCCC
Confidence 88853 3388888654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-07 Score=73.88 Aligned_cols=173 Identities=13% Similarity=0.171 Sum_probs=104.8
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEe-CCCceEEEc-cCC--cEEEeeecCCcc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~-~~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
.++|. |..++.+|.|..|+ +++..........+...+++.+++++.++. ....|..++ .++ ...+...
T Consensus 32 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~----- 106 (312)
T 4ery_A 32 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH----- 106 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC-----
Confidence 45664 55666888888888 555544333322333378899999766654 334577777 555 3333211
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+..+++.+++.++++. ...+.|..+|..+++... +.........++++|+++.++.+.
T Consensus 107 ~~~v~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 168 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSG-----------------SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS- 168 (312)
T ss_dssp SSCEEEEEECSSSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred CCCEEEEEEcCCCCEEEEE-----------------eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe-
Confidence 2356788899998877752 235678888887665433 333333456788999998666555
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.|..||+...+ ....+..........++++++|++.++...
T Consensus 169 ~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 169 YDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp TTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred CCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 46779999875422 122222111222455788999876666544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-07 Score=79.43 Aligned_cols=139 Identities=20% Similarity=0.146 Sum_probs=91.8
Q ss_pred CeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
++++.+++++|++... +.|.++| .++ ........ ....|..++++++|. +|++. ..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~~~v~~-----------------~~ 63 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLN-----------------NH 63 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS---SCCSSCEEEECTTSSEEEEEE-----------------TT
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC---CCCCCceeEECCCCCEEEEEe-----------------CC
Confidence 6677788888888644 5688898 666 33222211 111477899999986 77753 23
Q ss_pred CceEEEEeCCCCeeEEeecc-------ccccceEEEccCCCEEEEEeCC-----------CCEEEEEEecCCCCcc-eeE
Q 023085 113 HGQLLKYDPSSNITTLVADG-------FYFANGVALSRDEDYVVVCESW-----------KFRCRKYWLKGERKGK-LET 173 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~l~v~~~~-----------~~~l~~~~~~~~~~~~-~~~ 173 (287)
.+.|+.+|+.+++....... ...+.+++++|+++.+|++... .+.|..+|+++.+..+ ...
T Consensus 64 ~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 56799999987775433221 2337899999999999998844 4789999986532222 122
Q ss_pred EeccCCCCCcceeeCCCCCEEEEE
Q 023085 174 FAENLPGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 174 ~~~~~~~~~~~i~~d~~G~lwv~~ 197 (287)
+. .+..+.+++++++|++|++.
T Consensus 144 ~~--~~~~~~~~~~s~dg~l~~~~ 165 (349)
T 1jmx_B 144 FP--MPRQVYLMRAADDGSLYVAG 165 (349)
T ss_dssp EE--CCSSCCCEEECTTSCEEEES
T ss_pred cc--CCCcccceeECCCCcEEEcc
Confidence 21 22347778899999988853
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-07 Score=78.58 Aligned_cols=159 Identities=17% Similarity=0.161 Sum_probs=98.4
Q ss_pred CeEEEEE-CC-ceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcC
Q 023085 14 GWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 85 (287)
Q Consensus 14 g~i~~~~-~~-~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~ 85 (287)
+.|..++ ++ ....+........ .+++.|||+ |..+.... .|+.++ .++ ...+... ...+..+++.+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-----~~~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----PRHNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-----SSCEEEEEECT
T ss_pred ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-----CCcccCEEEcC
Confidence 6788888 43 4444444444445 889999996 44444332 588888 677 5544322 12567889999
Q ss_pred CCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEE
Q 023085 86 DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYW 162 (287)
Q Consensus 86 ~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~ 162 (287)
+|. |.++... .....|+.+|..+++...+.........++|+|||+.|+++.... ..|+.++
T Consensus 233 dg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 233 DGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp TSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 997 4444211 123469999998787766554444556788999999888776433 3788888
Q ss_pred ecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEE
Q 023085 163 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 197 (287)
.++.+. ..+. ........++++++|+..+.+
T Consensus 298 ~~~~~~---~~l~-~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 298 INGGAP---QRIT-WEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp TTSSCC---EECC-CSSSEEEEEEECTTSSEEEEE
T ss_pred CCCCCE---EEEe-cCCCcccCeEECCCCCEEEEE
Confidence 765321 1111 112234567889999744443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-07 Score=78.04 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=124.0
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCcc-----ccCeEECCCCcEEEEeCCCceEEEc-cCC-c-EEEeeec-CC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT-----LVGLTSTKEGHLIICDNANGLHKVS-EDG-V-ENFLSYV-NG 72 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~-----~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~-~~~~~~~-~~ 72 (287)
+|.+|+++.++.|+.++ +|+........... ....+++ ++.+|+++....++.++ .+| . ....... .+
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~ 221 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG 221 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence 57899999999999999 67654333222111 1133344 67899987666799999 677 2 2221110 00
Q ss_pred c----cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 73 S----KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 73 ~----~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .+..+....+..++.+|++. ..+.|+.+|+++|+...... ......++. +++.+
T Consensus 222 ~~~~~~~~~~~~~p~~~~~~v~~~~------------------~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~--~~~~l 280 (376)
T 3q7m_A 222 STEIDRLSDVDTTPVVVNGVVFALA------------------YNGNLTALDLRSGQIMWKRE-LGSVNDFIV--DGNRI 280 (376)
T ss_dssp --------CCCCCCEEETTEEEEEC------------------TTSCEEEEETTTCCEEEEEC-CCCEEEEEE--ETTEE
T ss_pred CcccccccccCCCcEEECCEEEEEe------------------cCcEEEEEECCCCcEEeecc-CCCCCCceE--ECCEE
Confidence 0 00001111112357888852 34679999998887654332 222333443 35569
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
|+... .+.|+++|.++++.. ..............++. ++.||+++..
T Consensus 281 ~~~~~-~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~-~~~l~v~~~~----------------------------- 327 (376)
T 3q7m_A 281 YLVDQ-NDRVMALTIDGGVTL--WTQSDLLHRLLTSPVLY-NGNLVVGDSE----------------------------- 327 (376)
T ss_dssp EEEET-TCCEEEEETTTCCEE--EEECTTTTSCCCCCEEE-TTEEEEECTT-----------------------------
T ss_pred EEEcC-CCeEEEEECCCCcEE--EeecccCCCcccCCEEE-CCEEEEEeCC-----------------------------
Confidence 98875 467999997643211 11110011112233333 5789999875
Q ss_pred ccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEe
Q 023085 229 ITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 285 (287)
+.|+.+|++ |+.++.+....+. ........+++||+++.. +.|..++
T Consensus 328 ------g~l~~~d~~tG~~~~~~~~~~~~---~~~~~~~~~~~l~v~~~~-G~l~~~~ 375 (376)
T 3q7m_A 328 ------GYLHWINVEDGRFVAQQKVDSSG---FQTEPVAADGKLLIQAKD-GTVYSIT 375 (376)
T ss_dssp ------SEEEEEETTTCCEEEEEECCTTC---BCSCCEEETTEEEEEBTT-SCEEEEE
T ss_pred ------CeEEEEECCCCcEEEEEecCCCc---ceeCCEEECCEEEEEeCC-CEEEEEe
Confidence 589999964 8888877753322 223344468999999875 4566654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-06 Score=75.99 Aligned_cols=249 Identities=11% Similarity=0.025 Sum_probs=129.9
Q ss_pred CCC-cEEEEec-----CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeC----------CCceEEEc-cCC
Q 023085 3 KNG-VIYTATR-----DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN----------ANGLHKVS-EDG 62 (287)
Q Consensus 3 ~~G-~l~~~~~-----~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~----------~~gi~~~~-~~g 62 (287)
++| .+|+.+. .+.|..+| +++..........| ++++++||+ ||+++. ...|.++| .++
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~ 119 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL 119 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 456 7999985 57899999 55555444445555 499999994 899873 13488899 565
Q ss_pred --cEEEeeecCC---ccccccceEEEcCCCc-EEEEcCCC--C---CCCccee--ee----------------eeccCCC
Q 023085 63 --VENFLSYVNG---SKLRFANDVVEASDGS-LYFTVSSS--K---YLPHEYC--LD----------------ILEGKPH 113 (287)
Q Consensus 63 --~~~~~~~~~~---~~~~~~~~l~~d~~g~-l~v~~~~~--~---~~~~~~~--~~----------------~~~~~~~ 113 (287)
...+. ...+ .....|..++++++|+ +|+++... . .+..... .. +.....+
T Consensus 120 ~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~D 198 (386)
T 3sjl_D 120 LPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD 198 (386)
T ss_dssp CEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT
T ss_pred eEEEEEE-CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCC
Confidence 33332 1111 1124788999999985 89986421 0 0111000 00 0011123
Q ss_pred ceEEEEeCCC-CeeEEeecccc----cc--ceEEEc-cCCCEEEEEeCCCCEEEEEEecCCCCcceeE---Eec------
Q 023085 114 GQLLKYDPSS-NITTLVADGFY----FA--NGVALS-RDEDYVVVCESWKFRCRKYWLKGERKGKLET---FAE------ 176 (287)
Q Consensus 114 ~~v~~~~~~~-~~~~~~~~~~~----~~--~~i~~~-~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~---~~~------ 176 (287)
+.+..++..+ +++........ .+ +...++ ++|+.+|++. ++.++.+|..++...-... +..
T Consensus 199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceecccccccccc
Confidence 4444455433 33311100000 01 112333 4565445443 4567777765432111111 100
Q ss_pred cCCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCC
Q 023085 177 NLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPT 254 (287)
Q Consensus 177 ~~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~ 254 (287)
..++....+++++++ ++|++..... ...+..+...|..+|.+ ++.+..+....
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~-------------------------~~~hk~~~~~V~viD~~t~kv~~~i~vg~ 331 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRD-------------------------EWRHKTASRFVVVLDAKTGERLAKFEMGH 331 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECC-------------------------TTCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred ccCCCcceeeECCCCCeEEEEecccc-------------------------ccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence 011122337777654 6888765310 00001123578999975 66777776532
Q ss_pred CccccceEEEEEe-CC--EEEEEecCCCeEEEEeC
Q 023085 255 GQLMSFVTSGLQV-DN--HLYVISLTSNFIGKVQL 286 (287)
Q Consensus 255 ~~~~~~~~~~~~~-~g--~l~i~~~~~~~i~~~~~ 286 (287)
.+.++.+. ++ +||+++..++.|.++|.
T Consensus 332 -----~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 332 -----EIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp -----EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred -----CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 34455553 43 68888888999999986
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-07 Score=77.18 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=94.6
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
.+.||+.+ .++.++.|| +.+..........++ +++.| .++||+++....|+.+| .+. ...+.-...+.+...
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~ 173 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE 173 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence 35899999 578889999 444433333344556 66655 24799998656799999 555 444433334455566
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--c-----------ccccceEEEccC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G-----------FYFANGVALSRD 144 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~-----------~~~~~~i~~~~~ 144 (287)
++.+... +|.||+.... ...|.++|++++++..... . ..-+||||++|+
T Consensus 174 lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 174 LNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp EEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred cceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 7777766 7899996422 4589999999998754321 1 135699999999
Q ss_pred CCEEEEEeCCCCEEEEEEe
Q 023085 145 EDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~ 163 (287)
++.|||+.-.=.+++.+.+
T Consensus 236 ~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 236 HHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp TTEEEEEETTCSEEEEEEE
T ss_pred CCEEEEECCCCCceEEEEE
Confidence 9999999754456666554
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-07 Score=79.43 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=120.1
Q ss_pred CeEECCCCcEEEEeCCC----------------ceEEEc-c-C--C-cEEEee-ecCCccccccceEEEc-C-------C
Q 023085 37 GLTSTKEGHLIICDNAN----------------GLHKVS-E-D--G-VENFLS-YVNGSKLRFANDVVEA-S-------D 86 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~----------------gi~~~~-~-~--g-~~~~~~-~~~~~~~~~~~~l~~d-~-------~ 86 (287)
.+.+|+.|+|||.+.+. .|+.+| . + . +..+.- .....+....+++++| . +
T Consensus 91 ~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~ 170 (381)
T 3q6k_A 91 QPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSE 170 (381)
T ss_dssp EEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCS
T ss_pred EEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCc
Confidence 78899999999998551 277888 4 4 4 333321 1111223467889999 2 4
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-------------------cccceEEEccC---
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-------------------YFANGVALSRD--- 144 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------------~~~~~i~~~~~--- 144 (287)
+.+||+|.. ..+|..+|..+++-.++.+.. ....||+++|+
T Consensus 171 ~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~ 233 (381)
T 3q6k_A 171 TFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSE 233 (381)
T ss_dssp EEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTT
T ss_pred cEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCC
Confidence 568998754 346777777666544443210 13457899998
Q ss_pred -CCEEEEEeCCCCEEEEEEec---CCCC-cceeEEeccCCCCCc--ceeeC-CCCCEEEEEeccchhHHHHhhcchhHHH
Q 023085 145 -EDYVVVCESWKFRCRKYWLK---GERK-GKLETFAENLPGAPD--NINLA-PDGTFWIAIIKLDARRMKILNSSKLIKH 216 (287)
Q Consensus 145 -~~~l~v~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~~~~--~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~ 216 (287)
++.||+....+.+++++..+ .+.. ...+.+. ......+ ++++| ++|+||++...
T Consensus 234 ~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G-~kg~~s~~~~~~~D~~~G~ly~~~~~----------------- 295 (381)
T 3q6k_A 234 GNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLG-NRGKYNDAIALAYDPKTKVIFFAEAN----------------- 295 (381)
T ss_dssp SCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEE-ECCTTCCEEEEEECTTTCEEEEEESS-----------------
T ss_pred CCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEee-ecCCCCCcceEEEeCCCCeEEEEecc-----------------
Confidence 88999999888899998743 2222 2222222 2221123 46786 79999999987
Q ss_pred HHHhCCccccccccCCCceEEEEECCCC-cE-----EEEEECCCCccccceEEEEEe-CCEEEEEecC
Q 023085 217 VLAAYPKLFSQFITLGGGAHLIHVAEDG-TI-----IRNLVDPTGQLMSFVTSGLQV-DNHLYVISLT 277 (287)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~~-----~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~ 277 (287)
..+|.+.++++ .. ......+ .+..+..+..+ +|.||+.+..
T Consensus 296 -----------------~~aI~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 296 -----------------TKQVSCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp -----------------SSEEEEEETTSCSBCGGGEEEEEECT---TCCSEEEEEECTTSCEEEEECS
T ss_pred -----------------CCeEEEEeCCCCccccCceEEEEECC---CccccCeEEECCCCeEEEEECc
Confidence 46899999887 22 3334443 35678888886 7999998753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-07 Score=73.77 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=105.5
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--cccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.+..++.++. ++||++... .+.+.|.++|++++++..... ...+..|+++ +++.||+...
T Consensus 21 ~ftqGL~~~~-~~LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw 82 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTW 82 (243)
T ss_dssp CCEEEEEEET-TEEEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEES
T ss_pred cccccEEEEC-CEEEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEe
Confidence 4566888885 899997422 124579999999998765432 2234456655 4678999999
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
.++.+++||.++. .....+. .++.+-+++.| .++||++...
T Consensus 83 ~~~~v~v~D~~tl--~~~~ti~--~~~~Gwglt~d-g~~L~vSdgs---------------------------------- 123 (243)
T 3mbr_X 83 RNHEGFVYDLATL--TPRARFR--YPGEGWALTSD-DSHLYMSDGT---------------------------------- 123 (243)
T ss_dssp SSSEEEEEETTTT--EEEEEEE--CSSCCCEEEEC-SSCEEEECSS----------------------------------
T ss_pred eCCEEEEEECCcC--cEEEEEe--CCCCceEEeeC-CCEEEEECCC----------------------------------
Confidence 9999999997542 2222332 22335566655 3579998754
Q ss_pred ceEEEEECCC-CcEEEEEECC-CCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 234 GAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|..+||+ .+.+..+... ++..+..+..+...+|+||+....++.|.++|.
T Consensus 124 -~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 124 -AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDP 177 (243)
T ss_dssp -SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECT
T ss_pred -CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEEC
Confidence 489999987 4666666552 344455566666679999999999999999985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-06 Score=71.31 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=133.4
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEE--Ee-eCCccccCeEECCCCcE-EEEeCCCceEEEc-cCC--cEEEeeecC
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNW--KF-IDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~--~~-~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~ 71 (287)
.++| .|.+++.++.|..|+ +++.... .. ...... .+++.+++++ +++...+.|..++ .++ ...+..
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--- 181 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG--- 181 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec---
Confidence 3556 467777889999998 4432121 12 222334 7888999965 4445445688888 666 333311
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
....+..+++.+++..+++ ....+.|..+|..+++.............++++|+++.++++
T Consensus 182 --~~~~i~~~~~~~~~~~l~~-----------------~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 182 --HTDGASCIDISNDGTKLWT-----------------GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred --ccCceEEEEECCCCCEEEE-----------------EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEE
Confidence 1235778999999876664 223568889998877654443333456778899999977776
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
.. .+.|..|+..... ...+. .....+..+++.++|++.++...
T Consensus 243 ~~-~~~i~~~~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------------------------- 285 (337)
T 1gxr_A 243 ME-SSNVEVLHVNKPD---KYQLH-LHESCVLSLKFAYCGKWFVSTGK-------------------------------- 285 (337)
T ss_dssp ET-TSCEEEEETTSSC---EEEEC-CCSSCEEEEEECTTSSEEEEEET--------------------------------
T ss_pred cC-CCcEEEEECCCCC---eEEEc-CCccceeEEEECCCCCEEEEecC--------------------------------
Confidence 54 5679999976432 11221 22234677889999986666654
Q ss_pred CCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 232 GGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++.+..... . ..+..+... ++++.+.....+.|.++++
T Consensus 286 --dg~i~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 286 --DNLLNAWRTPYGASIFQSKE-S----SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --TSEEEEEETTTCCEEEEEEC-S----SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred --CCcEEEEECCCCeEEEEecC-C----CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 3567777754 555544332 1 245666664 4555455556667777764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-07 Score=73.83 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=99.4
Q ss_pred cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cC-C-cEEEeeecCCccccccceEEEcCC
Q 023085 12 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-G-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 12 ~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~-g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.++.|+.++ +++...+........ .+++.++|+.++......|++++ .+ + ...+... .....+.++++.++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spd 95 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTG---FATICNNDHGISPD 95 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCT---TCCCBCSCCEECTT
T ss_pred cceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccc---cccccccceEECCC
Confidence 456788888 556555555444555 88999999866555456789998 67 6 5443221 11245678899999
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
|..+++... .......|+.++..+++...+... .....++++|+++.++++....+.+..|+++..
T Consensus 96 g~~l~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 96 GALYAISDK-------------VEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp SSEEEEEEC-------------TTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEEEEe-------------CCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 976553211 011246799998876665544332 235677899999988766544554444443311
Q ss_pred CCcceeEEeccCCCCCcceeeCCCCC-EEEEE
Q 023085 167 RKGKLETFAENLPGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~ 197 (287)
. .....+. .....+..++++++|+ |+++.
T Consensus 162 ~-~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 162 S-GVETRLT-HGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp T-CCEEECC-CSSSCEEEEEECTTSSEEEEEE
T ss_pred C-CcceEcc-cCCCccccceECCCCCEEEEEe
Confidence 1 1122222 2223456788899987 44444
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=98.92 E-value=8.1e-08 Score=85.28 Aligned_cols=166 Identities=10% Similarity=0.059 Sum_probs=100.8
Q ss_pred EEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC-cEEEeeecCCc----cccccceEEEcC----CCcEEEEc
Q 023085 25 VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLSYVNGS----KLRFANDVVEAS----DGSLYFTV 93 (287)
Q Consensus 25 ~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g-~~~~~~~~~~~----~~~~~~~l~~d~----~g~l~v~~ 93 (287)
+.+......|+ +|+++++|+|||++...+ |++++ .+| .+.+....... ....+.+|++++ ++.||++.
T Consensus 20 ~~~a~~l~~P~-~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 20 KVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEECCCCCce-EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 34444456788 999999999999997654 99998 557 65554322111 124566899998 68999975
Q ss_pred CCCCCCCcceeeeeeccCCCceEEEEeCCC--Cee---EEeec-----cccccceEEEccCCCEEEEEeCC---------
Q 023085 94 SSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NIT---TLVAD-----GFYFANGVALSRDEDYVVVCESW--------- 154 (287)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~---~~~~~-----~~~~~~~i~~~~~~~~l~v~~~~--------- 154 (287)
+........ . .......|+|++.+. +.+ +.+.. ....+++|+|+|||. ||++.-.
T Consensus 99 s~~~~~~~~---~--~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~ 172 (454)
T 1cru_A 99 TFKNPKSTD---K--ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYL 172 (454)
T ss_dssp EEECTTC-----C--CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGT
T ss_pred eccccCCCc---c--ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcccc
Confidence 320000000 0 000024677776432 222 12211 123568899999997 9998421
Q ss_pred -----------------------CCEEEEEEecCCCCc---------ceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 -----------------------KFRCRKYWLKGERKG---------KLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 -----------------------~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.++|+|++.++. +. ..+.+.... -.|.++++|++|.||++...
T Consensus 173 ~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~-ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g 247 (454)
T 1cru_A 173 FLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGS-IPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQG 247 (454)
T ss_dssp TSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSC-CCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEEC
T ss_pred ccccccccccccccccccCCCCCCeeEEEEeCCCC-CCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecC
Confidence 367999987652 11 223343211 24889999999999999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-07 Score=81.72 Aligned_cols=229 Identities=14% Similarity=0.077 Sum_probs=136.2
Q ss_pred CCCC-cEEEEecCCeEEEEE-C-Cc--eEEEEeeCCccccCeEEC----CCC-cEEEEeCC-CceEEEc-cCC--cEEEe
Q 023085 2 DKNG-VIYTATRDGWIKRLQ-D-GT--WVNWKFIDSQTLVGLTST----KEG-HLIICDNA-NGLHKVS-EDG--VENFL 67 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~-~-~~--~~~~~~~~~~~~~~i~~d----~dg-~l~v~~~~-~gi~~~~-~~g--~~~~~ 67 (287)
++|| .+|+++.++.|..++ . .. ..........|. +++++ +|| .+|+++.. ..+.++| .+. +..+.
T Consensus 205 SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 205 SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 5677 589998889999999 3 22 222233345677 99999 699 58888655 5688888 555 33332
Q ss_pred eec---CC---ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe--eccccccceE
Q 023085 68 SYV---NG---SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGV 139 (287)
Q Consensus 68 ~~~---~~---~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i 139 (287)
... .+ .+...+.+++...++..|+.. -...+.|+.+|..+.+...+ ......++++
T Consensus 284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~----------------~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~ 347 (567)
T 1qks_A 284 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVN----------------VKETGKILLVDYTDLNNLKTTEISAERFLHDG 347 (567)
T ss_dssp CCEECTTTCCEESCCCEEEEEECSSSSEEEEE----------------ETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred ccccccccccccCCCceEEEEEcCCCCEEEEE----------------ecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence 111 00 011244567666665554431 12356888888754321111 1223467888
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEe-ccCCCCC-ccee-eCCC-CCEEEEEeccchhHHHHhhcchhHH
Q 023085 140 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAP-DNIN-LAPD-GTFWIAIIKLDARRMKILNSSKLIK 215 (287)
Q Consensus 140 ~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~i~-~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~ 215 (287)
.|+|+++++|+++..+++|..+|.+..++... ... ...+ .| .+.. ++++ |.+|++..-.
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~-i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~~g--------------- 410 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDTGGQTP-HPGRGANFVHPTFGPVWATSHMG--------------- 410 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSSB-CCTTCEEEEETTTEEEEEEEBSS---------------
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEE-EeccCcCC-CCccceeeECCCCCcEEEeCCCC---------------
Confidence 99999999999998889999999765322111 111 1111 22 3443 4776 6899877531
Q ss_pred HHHHhCCccccccccCCCceEEEEECCCC--------cEEEEEECCCCccccceEEEEE--eCCEEEEEecC------CC
Q 023085 216 HVLAAYPKLFSQFITLGGGAHLIHVAEDG--------TIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLT------SN 279 (287)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~------~~ 279 (287)
.+.|..++.+. +.+..+....+ ....+.. +..+||+.+.. ++
T Consensus 411 ------------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~----g~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 411 ------------------DDSVALIGTDPEGHPDNAWKILDSFPALGG----GSLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp ------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCS----CCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred ------------------CCeEEEecCCCCCCccccCEEEEEEecCCC----CCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 24677776543 45666664321 1122222 35789998853 45
Q ss_pred eEEEEeC
Q 023085 280 FIGKVQL 286 (287)
Q Consensus 280 ~i~~~~~ 286 (287)
+|.+||+
T Consensus 469 ~v~v~d~ 475 (567)
T 1qks_A 469 SVAVFDI 475 (567)
T ss_dssp CEEEEEG
T ss_pred eEEEEEC
Confidence 9999986
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-07 Score=75.46 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=93.7
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
.+.||+.+ .++.++.|| +.+..........++ +++.|. ++||+++....|..+| .+. ...+.-...+.+...
T Consensus 105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~ 182 (268)
T 3nok_A 105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL 182 (268)
T ss_dssp SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc
Confidence 35899998 677889999 444433333344556 777552 4799998656799999 555 444433334455567
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--------------cccccceEEEcc
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------GFYFANGVALSR 143 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~ 143 (287)
++.+... +|.||+.... ...|.++|++++++..... ...-+||||++|
T Consensus 183 lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 183 INELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp EEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred ccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 7777776 7899986422 4589999999998754321 113569999999
Q ss_pred CCCEEEEEeCCCCEEEEEE
Q 023085 144 DEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~ 162 (287)
+++.|||+.-.=.+++.+.
T Consensus 245 ~~~rlfVTGK~Wp~~~ev~ 263 (268)
T 3nok_A 245 GSGRIFMTGKLWPRLFEVR 263 (268)
T ss_dssp TTCCEEEEETTCSEEEEEE
T ss_pred CCCEEEEeCCCCCceEEEE
Confidence 9999999874334555544
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.6e-06 Score=69.02 Aligned_cols=215 Identities=12% Similarity=0.070 Sum_probs=130.2
Q ss_pred EEEEecCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-c-EEEeeecCCccccccc
Q 023085 7 IYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKLRFAN 79 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~-~~~~~~~~~~~~~~~~ 79 (287)
+..++.++.|..|+ +++... +........ .+++.++|+..++... ..+..++ +++ . ..+. . ....+.
T Consensus 95 l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~----~~~~v~ 168 (321)
T 3ow8_A 95 AASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-T----RGKFIL 168 (321)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-C----SSSCEE
T ss_pred EEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-C----CCceEE
Confidence 44555788888888 444333 222233344 7899999986665434 4577777 555 2 2221 1 123567
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l 158 (287)
.+++.++|.++++. ...+.|..+|..+++..... ........++++|+++.|..+ ...+.|
T Consensus 169 ~~~~spdg~~lasg-----------------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i 230 (321)
T 3ow8_A 169 SIAYSPDGKYLASG-----------------AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYI 230 (321)
T ss_dssp EEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCE
T ss_pred EEEECCCCCEEEEE-----------------cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeE
Confidence 89999999877752 23567888898877654433 233445789999999855554 456779
Q ss_pred EEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEE
Q 023085 159 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLI 238 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (287)
..|++.... ....+. .-......+++.++|.+.++... .+.|.
T Consensus 231 ~iwd~~~~~--~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~----------------------------------D~~v~ 273 (321)
T 3ow8_A 231 KIYDVQHAN--LAGTLS-GHASWVLNVAFCPDDTHFVSSSS----------------------------------DKSVK 273 (321)
T ss_dssp EEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEET----------------------------------TSCEE
T ss_pred EEEECCCcc--eeEEEc-CCCCceEEEEECCCCCEEEEEeC----------------------------------CCcEE
Confidence 999875432 111221 12223567889999987666554 24566
Q ss_pred EECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 239 HVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 239 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.++.+ ++.+..+.... ..+..+... +++..++.-..+.|.++|+
T Consensus 274 iwd~~~~~~~~~~~~h~----~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 274 VWDVGTRTCVHTFFDHQ----DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEeCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 66654 55666665332 246677765 4554455555567777764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-06 Score=76.24 Aligned_cols=216 Identities=13% Similarity=0.156 Sum_probs=131.4
Q ss_pred CCCCc-EEEEecCCeEEEEE-CCceEEEEe-eCCccccCeEECCCCcEEEE-eCCCceEEEccCC--cEEEeeecCCccc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-DGTWVNWKF-IDSQTLVGLTSTKEGHLIIC-DNANGLHKVSEDG--VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~~~g--~~~~~~~~~~~~~ 75 (287)
.++|. |..++.++.|..|+ +++...... ...... .+++.+||+++++ ...+.|..++.++ ...+... .
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~-----~ 426 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-----S 426 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECC-----S
T ss_pred CCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCC-----C
Confidence 35664 55666888888888 555433322 233334 8899999975554 4334466677555 4444221 2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..+.++++.+++.+.++. ..++.|..++.....+..+.........++++|+++.|..+. ..
T Consensus 427 ~~v~~~~~s~d~~~l~~~-----------------~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~-~d 488 (577)
T 2ymu_A 427 SSVWGVAFSPDDQTIASA-----------------SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DD 488 (577)
T ss_dssp SCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEE-TT
T ss_pred CCeEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC
Confidence 356789999999877642 234667777866444444444445567889999999666554 45
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 235 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (287)
+.|..|+.++. ....+. .-......+++.++|++.++... .+
T Consensus 489 ~~i~iw~~~~~---~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~----------------------------------dg 530 (577)
T 2ymu_A 489 KTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASD----------------------------------DK 530 (577)
T ss_dssp SEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSSCEEEEET----------------------------------TS
T ss_pred CEEEEEcCCCC---EEEEEe-CCCCCEEEEEEcCCCCEEEEEEC----------------------------------cC
Confidence 77888885432 122222 12234667889999986665544 35
Q ss_pred EEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEE
Q 023085 236 HLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK 283 (287)
Q Consensus 236 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~ 283 (287)
.|..++.+++.+..+....+ .+..+.+. +++..++.-....|.+
T Consensus 531 ~v~lwd~~~~~~~~~~~h~~----~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 531 TVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp EEEEECTTSCEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEEEEeCCCCEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 67778888888888765332 46677765 5554444333334544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-06 Score=77.09 Aligned_cols=217 Identities=13% Similarity=0.169 Sum_probs=125.7
Q ss_pred CCCc-EEEEecCCeEEEEE-CCc-eEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEccCC--cEEEeeecCCcccc
Q 023085 3 KNGV-IYTATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G~-l~~~~~~g~i~~~~-~~~-~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~~~g--~~~~~~~~~~~~~~ 76 (287)
++|. |..++.++.|..|+ ++. ...+........ .+++.++|+..++....+ +..++.++ ...+... ..
T Consensus 313 ~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~-----~~ 386 (577)
T 2ymu_A 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-----SS 386 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECC-----SS
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE-EEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCC-----CC
Confidence 4553 45556778888888 433 333322223334 789999997655543444 55556555 4443221 23
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
.+.++++.++|..+++. ..++.|..++.....+..+.........++++|+++.|..+. ..+
T Consensus 387 ~v~~~~~s~dg~~l~~~-----------------~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~ 448 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASA-----------------SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDK 448 (577)
T ss_dssp CEEEEEECTTSSCEEEE-----------------ETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred CeEEEEECCCCCEEEEE-----------------eCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCC
Confidence 57789999999866642 234567778765333444444444557789999999666655 457
Q ss_pred EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceE
Q 023085 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH 236 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (287)
.|..|+.++. ....+. ........+++.++|++.++... .+.
T Consensus 449 ~v~~w~~~~~---~~~~~~-~~~~~v~~~~~spd~~~las~~~----------------------------------d~~ 490 (577)
T 2ymu_A 449 TVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASD----------------------------------DKT 490 (577)
T ss_dssp EEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSCEEEEEET----------------------------------TSE
T ss_pred EEEEEECCCC---EEEEEc-CCCCCEEEEEEcCCCCEEEEEeC----------------------------------CCE
Confidence 7888885432 122222 12234567889999987766654 245
Q ss_pred EEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 237 LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 237 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
|..++.+++.+..+....+ .+..+... ++++.++.-....|.++|
T Consensus 491 i~iw~~~~~~~~~~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 491 VKLWNRNGQLLQTLTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEEETTSCEEEEEECCSS----CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 6666777777777664332 34555553 344333333334455444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-07 Score=72.90 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=94.5
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
.++||..+ .++.++.|| +.+.......+..++ +++.| .++||+++....|..+| .+. ...+.-...+.+...
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 35899998 678889999 444333333344556 66654 34899998666799999 554 444433334455567
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--------------cccccceEEEcc
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------GFYFANGVALSR 143 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~ 143 (287)
++.+... +|.||+.... ...|.++|++++++..... ...-+|||+++|
T Consensus 152 lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~ 213 (243)
T 3mbr_X 152 LNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA 213 (243)
T ss_dssp EEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET
T ss_pred ceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC
Confidence 7777766 7899985422 4589999999998754311 113569999999
Q ss_pred CCCEEEEEeCCCCEEEEEEe
Q 023085 144 DEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~ 163 (287)
+++.|||+.-.=.+++.+.+
T Consensus 214 ~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 214 EHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp TTTEEEEEETTCSEEEEEEE
T ss_pred CCCEEEEECCCCCcEEEEEE
Confidence 99999999754456666554
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-07 Score=77.37 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=122.0
Q ss_pred CCCCc-EEEEecC---CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTATRD---GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~~~---g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~ 69 (287)
.++|. |.+++.+ ..|+.++ +++...+........ .+++.|||+ |+++... ..|+.++ .++ ...+...
T Consensus 187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~ 265 (415)
T 2hqs_A 187 SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 265 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCC
Confidence 46774 5556544 3888888 566555544444445 789999997 5534322 2488888 666 5444221
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
...+..+++.++|. |+++... .....|+.++..+++...+.........++++|+|+.|
T Consensus 266 -----~~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 266 -----RSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp -----SSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEE
T ss_pred -----CCcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEE
Confidence 13456788999997 4443210 12337999998877765554433455678899999988
Q ss_pred EEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCE-EEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 149 VVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 149 ~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++... ...|+.+++++.+ ...+.. . .....+++.++|+. ..++..
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~---~~~l~~-~-~~~~~~~~spdg~~l~~~s~~-------------------------- 374 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGG---VQVLSS-T-FLDETPSLAPNGTMVIYSSSQ-------------------------- 374 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCC---EEECCC-S-SSCEEEEECTTSSEEEEEEEE--------------------------
T ss_pred EEEECcCCceEEEEEECCCCC---EEEecC-C-CCcCCeEEcCCCCEEEEEEcC--------------------------
Confidence 887654 3478889876432 222221 1 24667889999974 444433
Q ss_pred cccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
.....|+.++.+++....+....+
T Consensus 375 ------~~~~~l~~~d~~g~~~~~l~~~~~ 398 (415)
T 2hqs_A 375 ------GMGSVLNLVSTDGRFKARLPATDG 398 (415)
T ss_dssp ------TTEEEEEEEETTSCCEEECCCSSS
T ss_pred ------CCccEEEEEECCCCcEEEeeCCCC
Confidence 112378889888887777765444
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.8e-06 Score=70.33 Aligned_cols=89 Identities=8% Similarity=-0.005 Sum_probs=52.8
Q ss_pred CCC-cEEEEec-CC----eEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeC----------CCceEEEc-cCC
Q 023085 3 KNG-VIYTATR-DG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN----------ANGLHKVS-EDG 62 (287)
Q Consensus 3 ~~G-~l~~~~~-~g----~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~----------~~gi~~~~-~~g 62 (287)
+++ .+|+.+. .. .|..++ +++.......... - ++++++|| .||+++. .+.|.++| .+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 345 5888764 32 778888 5554333222223 3 89999999 5899863 23477888 454
Q ss_pred --cEEEeeecCCc--cccccceEEEcCCCc-EEEEc
Q 023085 63 --VENFLSYVNGS--KLRFANDVVEASDGS-LYFTV 93 (287)
Q Consensus 63 --~~~~~~~~~~~--~~~~~~~l~~d~~g~-l~v~~ 93 (287)
...+....... ....|..++++++|. ||+++
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEe
Confidence 23321110000 013578899999985 78865
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-07 Score=80.12 Aligned_cols=218 Identities=11% Similarity=0.046 Sum_probs=122.1
Q ss_pred CCCCCcEEEEecCCeEEEEE--C--CceEEEEe-eCCccccCeEECC--CCcEEEEeCCC----ceEEEccCC--cEEEe
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--D--GTWVNWKF-IDSQTLVGLTSTK--EGHLIICDNAN----GLHKVSEDG--VENFL 67 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~--~~~~~~~~-~~~~~~~~i~~d~--dg~l~v~~~~~----gi~~~~~~g--~~~~~ 67 (287)
+|++|.||+++..| ++++. + ..+..... ........|++|+ +++||+++... +|++.+..| ++.+.
T Consensus 19 ~d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~ 97 (394)
T 3b7f_A 19 ESGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEAT 97 (394)
T ss_dssp CCSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECS
T ss_pred CCCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECC
Confidence 36788999999765 77777 3 35554421 2223333889998 78999997654 688876444 55543
Q ss_pred eec--CCc-------cccccceEEEcC---CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--
Q 023085 68 SYV--NGS-------KLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-- 133 (287)
Q Consensus 68 ~~~--~~~-------~~~~~~~l~~d~---~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-- 133 (287)
... ... ....+.+|++++ .+.+|+.. ..++|++.+.....++.+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~------------------~~ggl~~S~DgG~tW~~~~~~~~~ 159 (394)
T 3b7f_A 98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT------------------SPQGLFRSTDHGASWEPVAGFNDH 159 (394)
T ss_dssp BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE------------------ETTEEEEESSTTSBCEECHHHHTC
T ss_pred ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe------------------cCCcEEEEcCCCCCeEECcCccCC
Confidence 211 000 112455688885 67899942 2457888875544455442110
Q ss_pred -----------------cccceEEEccC-CCEEEEEeCCCCEEEEEEecCCCCcceeE-Ee-ccCC-------CCCccee
Q 023085 134 -----------------YFANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLET-FA-ENLP-------GAPDNIN 186 (287)
Q Consensus 134 -----------------~~~~~i~~~~~-~~~l~v~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~-------~~~~~i~ 186 (287)
.....|+++|. .+.+|++... +.|++.+..+.+...... .. ...+ .....|+
T Consensus 160 p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~ 238 (394)
T 3b7f_A 160 PMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVV 238 (394)
T ss_dssp TTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEE
T ss_pred ccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEE
Confidence 11235777773 4458887543 457766533322211100 00 0000 1134577
Q ss_pred eCCC--CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccc---cce
Q 023085 187 LAPD--GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLM---SFV 261 (287)
Q Consensus 187 ~d~~--G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~---~~~ 261 (287)
++++ +.||+++.. +|++.+..|+....+.. +... ...
T Consensus 239 ~~~~~~~~l~vg~~~------------------------------------gl~~s~D~G~tW~~~~~--~l~~~~~~~~ 280 (394)
T 3b7f_A 239 QHPAAPDILYQQNHC------------------------------------GIYRMDRREGVWKRIGD--AMPREVGDIG 280 (394)
T ss_dssp ECSSSTTEEEEEETT------------------------------------EEEEEETTTTEEECGGG--GSCTTTCSCE
T ss_pred ECCCCCCEEEEEcCC------------------------------------eEEEeCCCCCcceECCC--CCCCCCccce
Confidence 8875 789998765 78887766766555432 1111 233
Q ss_pred EEEEEe---CCEEEEEec
Q 023085 262 TSGLQV---DNHLYVISL 276 (287)
Q Consensus 262 ~~~~~~---~g~l~i~~~ 276 (287)
..+.++ .+.||+++.
T Consensus 281 ~~i~~~p~~~~~l~~~t~ 298 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPM 298 (394)
T ss_dssp EEEEECSSCTTCEEEEEC
T ss_pred EEEEECCCCCCEEEEEec
Confidence 455553 478999864
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-06 Score=75.25 Aligned_cols=190 Identities=8% Similarity=0.025 Sum_probs=111.3
Q ss_pred cEEEEe-cCCeEEEEE--CC----ceEEEEee-------C-CccccCeEECCCCcEEEEeCC-------CceEEEc-cCC
Q 023085 6 VIYTAT-RDGWIKRLQ--DG----TWVNWKFI-------D-SQTLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG 62 (287)
Q Consensus 6 ~l~~~~-~~g~i~~~~--~~----~~~~~~~~-------~-~~~~~~i~~d~dg~l~v~~~~-------~gi~~~~-~~g 62 (287)
.||+.. ..++|+.++ +. +.....++ . ..|. .+...++| +||+..+ .++..+| .++
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 688877 668999999 22 22222210 1 2466 77888999 9997543 3699999 555
Q ss_pred --cEEEeeecCCccccccceEEEcCCCcEEEEcCCCC-CC-CcceeeeeeccCCCceEEEEeCCCCeeEEeec---cccc
Q 023085 63 --VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSK-YL-PHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYF 135 (287)
Q Consensus 63 --~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~-~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~ 135 (287)
+..+... ..+....+++.+.+++++.++...+. -. ...|..+.+.+.....|..+|..++++..... ....
T Consensus 175 ~v~~~~~~~--~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 175 EPLGKWEID--RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp CEEEECCSB--CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred eEEEEEccC--CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 3433211 22234566788888887666532110 00 00111111111234678889887776443221 1245
Q ss_pred cceEEE--ccCCCEEEEEeC-----CCCEEEEEEecCCCCcceeEE-ecc------C----------CCCCcceeeCCCC
Q 023085 136 ANGVAL--SRDEDYVVVCES-----WKFRCRKYWLKGERKGKLETF-AEN------L----------PGAPDNINLAPDG 191 (287)
Q Consensus 136 ~~~i~~--~~~~~~l~v~~~-----~~~~l~~~~~~~~~~~~~~~~-~~~------~----------~~~~~~i~~d~~G 191 (287)
|..+.+ +|+++.+|++.. .++.|++|..++++....+.+ ... . .+.|.+|.+++||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 667766 999999999998 888898877654322211111 000 0 2468899999998
Q ss_pred C-EEEEEec
Q 023085 192 T-FWIAIIK 199 (287)
Q Consensus 192 ~-lwv~~~~ 199 (287)
+ ||+++..
T Consensus 333 rfLYVSnrg 341 (462)
T 2ece_A 333 KFLYLSLWG 341 (462)
T ss_dssp CEEEEEETT
T ss_pred CEEEEEeCC
Confidence 5 8888876
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.83 E-value=8.7e-06 Score=68.10 Aligned_cols=174 Identities=10% Similarity=0.073 Sum_probs=102.3
Q ss_pred CCCCcEEEEecCCeEEEEE--CCc----eEEEEe-eCCccccCeEECCCCcEE-EEeCCCceEEEc-cCC-cEEEeeecC
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGT----WVNWKF-IDSQTLVGLTSTKEGHLI-ICDNANGLHKVS-EDG-VENFLSYVN 71 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~----~~~~~~-~~~~~~~~i~~d~dg~l~-v~~~~~gi~~~~-~~g-~~~~~~~~~ 71 (287)
.++|.+.++..+|.|..|+ ++. ...+.. ....+...+++.+++++. ++...+.|..++ .++ .........
T Consensus 60 ~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 60 SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp CSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred ecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence 4567544444488899898 322 122211 122233378899999754 444444577777 555 322222111
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVV 150 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v 150 (287)
....+..+++.+++..+++. ...+.|..+|..+++..... ........++++|+++.++.
T Consensus 140 --~~~~i~~~~~~~~~~~l~~~-----------------~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 140 --SAPACYALAISPDSKVCFSC-----------------CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp --SSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --CCCceEEEEECCCCCEEEEE-----------------eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 12356788999988766642 23467888888777644332 33445678899999987776
Q ss_pred EeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 151 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+. ..+.|..|++...+ ....+ .....+..+++.++|++.++...
T Consensus 201 ~~-~dg~i~~~d~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 201 GG-LDNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp EE-TTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred Ee-cCCcEEEEECCCCc--eEeee--cCCCceEEEEECCCCCEEEEEcC
Confidence 65 46789999975432 11112 12334667888898876655543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-07 Score=79.60 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=104.9
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC--CeeEEeec-------cccccceEEEcc--C
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NITTLVAD-------GFYFANGVALSR--D 144 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~-------~~~~~~~i~~~~--~ 144 (287)
..|.+++++++|.+|++...+..+...+. ....|.|+++|+++ .+...+.. ....|+|+.+.+ +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~-----~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFD-----PDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC----------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccC-----CCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 46789999999999998532111111111 12467899999863 33333321 123689998766 4
Q ss_pred CC-EEEEEeCC--CCEEEEEEec--CCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec-cchhHHHHhhcchhHHHHH
Q 023085 145 ED-YVVVCESW--KFRCRKYWLK--GERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK-LDARRMKILNSSKLIKHVL 218 (287)
Q Consensus 145 ~~-~l~v~~~~--~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~-~~~~~~~~~~~~~~~~~~~ 218 (287)
++ .||+++.. +.++..|+.+ +....-...+.......|+++++|++|.+|+++.- .+..... ..
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~----------~~ 194 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK----------SW 194 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH----------HH
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc----------cc
Confidence 54 58999865 3455555544 22111122222223346899999999999999852 2111111 00
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 023085 219 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~~ 287 (287)
... .....+.|+++++. + ...+. ++ +..+.+++.+ +..||++.....+|.+|+++
T Consensus 195 e~~--------~~~~~g~vyr~d~~-~-~~~~~--~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 195 EMH--------LGLAWSFVTYYSPN-D-VRVVA--EG--FDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp HHH--------TTCCCEEEEEECTT-C-CEEEE--EE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred hhh--------ccCCccEEEEEECC-e-EEEee--cC--CcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 000 02235799999984 3 22222 12 2345666664 46899999999999999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.79 E-value=7.6e-06 Score=69.63 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=128.8
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCce---EEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeecCC
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~---~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
.++|. |.+++.++.|..|+ ++++ ..+........ .+++.++++++++ ...+.|..++ .++ ........
T Consensus 17 s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-- 93 (372)
T 1k8k_C 17 NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-- 93 (372)
T ss_dssp CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC--
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee--
Confidence 46675 55666889999998 4532 22222233334 8899999976555 4334577777 566 33322211
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe----eEEeec-cccccceEEEccCCCE
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVAD-GFYFANGVALSRDEDY 147 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~-~~~~~~~i~~~~~~~~ 147 (287)
.....+.++++.+++..+++. ...+.|..++..++. ...... .......++++|+++.
T Consensus 94 ~~~~~v~~~~~~~~~~~l~~~-----------------~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 94 RINRAARCVRWAPNEKKFAVG-----------------SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp CCSSCEEEEEECTTSSEEEEE-----------------ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred cCCCceeEEEECCCCCEEEEE-----------------eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 112457889999998766642 123444444433232 122212 2344678889999986
Q ss_pred EEEEeCCCCEEEEEEecCCC---------------CcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcch
Q 023085 148 VVVCESWKFRCRKYWLKGER---------------KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~ 212 (287)
++.+. ..+.|..|++.... ..+.........+....++++++|++.++...
T Consensus 157 l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------- 222 (372)
T 1k8k_C 157 LAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------------- 222 (372)
T ss_dssp EEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-------------
T ss_pred EEEEc-CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-------------
Confidence 66655 45778889864110 11111111112234567888898876555544
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 213 LIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++. .++.+..+..... .+..+... ++++.+++ ..+.|.++++
T Consensus 223 ---------------------d~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 223 ---------------------DSTVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp ---------------------TTEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred ---------------------CCEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 246777775 4677777764332 35666664 67776666 6677777664
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-05 Score=68.47 Aligned_cols=86 Identities=8% Similarity=0.151 Sum_probs=53.8
Q ss_pred cEEEEec------CCeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeC----------CCceEEEc-cCC--c
Q 023085 6 VIYTATR------DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN----------ANGLHKVS-EDG--V 63 (287)
Q Consensus 6 ~l~~~~~------~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~----------~~gi~~~~-~~g--~ 63 (287)
.+|+.+. ++.|+.++ +++..........| ++++++|| .||+++. ...|..+| .++ .
T Consensus 17 ~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~ 94 (361)
T 2oiz_A 17 RIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE 94 (361)
T ss_dssp EEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE
T ss_pred EEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE
Confidence 6888763 46899999 56554333333334 78999999 5888863 12388888 555 3
Q ss_pred EEEeeecCC-ccccccceEEEcCCCc-EEEEc
Q 023085 64 ENFLSYVNG-SKLRFANDVVEASDGS-LYFTV 93 (287)
Q Consensus 64 ~~~~~~~~~-~~~~~~~~l~~d~~g~-l~v~~ 93 (287)
..+...... .....|..++++++|+ ||+++
T Consensus 95 ~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 95 KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred EEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence 333211100 0124688999999985 77764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-06 Score=71.80 Aligned_cols=142 Identities=11% Similarity=0.017 Sum_probs=87.3
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.+++.++++|..+...+.|..++ .++ ...+.....+ ....+.++++.++|+..++. ...
T Consensus 87 ~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-H~~~V~~v~~spdg~~l~sg-----------------s~d 148 (344)
T 4gqb_B 87 DLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSG-----------------SKD 148 (344)
T ss_dssp EEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEEC-CSSCEEEEEECTTSSEEEEE-----------------ETT
T ss_pred EEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccC-CCCCEEEEEECCCCCEEEEE-----------------eCC
Confidence 78888999888887555566677 555 3332211111 12467899999999987752 235
Q ss_pred ceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-CCCCCcceeeCCC-
Q 023085 114 GQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPD- 190 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~- 190 (287)
+.|..+|..+++..... ........+++++++..++++.+..+.|..||+...+. ...+... ....+..+++.++
T Consensus 149 ~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~ 226 (344)
T 4gqb_B 149 ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQ 226 (344)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSC
T ss_pred CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCC
Confidence 67888888877754433 33445677889998876777766678899999764321 1111111 1123456777774
Q ss_pred CCEEEEEe
Q 023085 191 GTFWIAII 198 (287)
Q Consensus 191 G~lwv~~~ 198 (287)
+++.++..
T Consensus 227 ~~~l~sg~ 234 (344)
T 4gqb_B 227 SEVFVFGD 234 (344)
T ss_dssp TTEEEEEE
T ss_pred CcceEEec
Confidence 45655543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-05 Score=66.70 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=99.9
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC---cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g---~~~~~~~~~~~ 73 (287)
.++|. |..++.+|.|..|+ +++..............+++.++|++.++... +.+..++ .++ ....... .+
T Consensus 64 s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~- 141 (340)
T 1got_B 64 GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL-AG- 141 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE-EC-
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe-cC-
Confidence 35664 55666889999998 44433322222222227889999986665433 3455565 332 2222111 11
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
....+..+.+.+++.+..+ ..++.|..+|..+++.... .........++++|+++.++ +.
T Consensus 142 h~~~v~~~~~~~~~~l~s~------------------s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sg 202 (340)
T 1got_B 142 HTGYLSCCRFLDDNQIVTS------------------SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SG 202 (340)
T ss_dssp CSSCEEEEEEEETTEEEEE------------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EE
T ss_pred CCccEEEEEECCCCcEEEE------------------ECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE-EE
Confidence 1234566667667765443 2356788888877765433 23334567788999998544 44
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...+.|..||+.... ....+. .-......+++.++|++.++...
T Consensus 203 ~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 203 ACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp ETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred eCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEcC
Confidence 456789999875421 112222 12234667889999987766654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.3e-07 Score=81.44 Aligned_cols=189 Identities=12% Similarity=0.069 Sum_probs=113.6
Q ss_pred CC-cEEEEe-cCCeEEEEE--CCceEEEEeeC--CccccCeEE-C-CCC-cEEEEeCC------------------CceE
Q 023085 4 NG-VIYTAT-RDGWIKRLQ--DGTWVNWKFID--SQTLVGLTS-T-KEG-HLIICDNA------------------NGLH 56 (287)
Q Consensus 4 ~G-~l~~~~-~~g~i~~~~--~~~~~~~~~~~--~~~~~~i~~-d-~dg-~l~v~~~~------------------~gi~ 56 (287)
|| .||+.+ .+++|.+++ +.+...+...+ ..|. ++++ . |++ .+|+++.. +-+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 55 688877 567899999 44544433432 3466 8887 4 777 57777411 1255
Q ss_pred EEc-cCC--cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCc---------cee--------eeee-ccC--C
Q 023085 57 KVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPH---------EYC--------LDIL-EGK--P 112 (287)
Q Consensus 57 ~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~---------~~~--------~~~~-~~~--~ 112 (287)
.+| .+. ..++. . + ..|..++++++|. +|+++...+-+.. .+. .+.. .+. .
T Consensus 179 vID~~t~~v~~qI~--V-g---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 179 AVDADKWEVAWQVL--V-S---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEETTTTEEEEEEE--E-S---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred EEECCCCeEEEEEE--e-C---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 566 333 22221 1 1 2577899999874 6777655432100 110 0000 000 0
Q ss_pred CceEEEEeCCC--Cee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC------Cc-ceeEEec-cCCCC
Q 023085 113 HGQLLKYDPSS--NIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KG-KLETFAE-NLPGA 181 (287)
Q Consensus 113 ~~~v~~~~~~~--~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~------~~-~~~~~~~-~~~~~ 181 (287)
-+.|..+|..+ ++. .........|+|+.++|||+++|+++...+.+..||.+..+ +. +...... .....
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g 332 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 332 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence 13588888876 333 22333345899999999999999999999999999986321 11 1112221 23346
Q ss_pred CcceeeCCCCCEEEEEec
Q 023085 182 PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 182 ~~~i~~d~~G~lwv~~~~ 199 (287)
|.++++|++|++|++..-
T Consensus 333 P~h~aF~~dG~aY~t~~l 350 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFL 350 (595)
T ss_dssp EEEEEECTTSEEEEEETT
T ss_pred cceEEECCCCeEEEEEec
Confidence 999999999999998865
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-05 Score=66.87 Aligned_cols=237 Identities=13% Similarity=0.027 Sum_probs=131.5
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC------CceEEEc-cCC--cEEEeee
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG--VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g--~~~~~~~ 69 (287)
.++| .|..++.+|.|..|+ +++............ .+.+.++++.+++... ..|..++ ..+ ...+...
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 3456 456666889999999 455444333333445 8899999976555323 3466666 332 2222111
Q ss_pred cCC--------ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-Cee-EEeeccccccceE
Q 023085 70 VNG--------SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT-TLVADGFYFANGV 139 (287)
Q Consensus 70 ~~~--------~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~~~~~~~i 139 (287)
... .....+..+++.+++..+++ +...+.|..+|..+ ++. ..+.........+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIA-----------------GHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEE-----------------EETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEE-----------------EcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 100 00115677888888876664 22356788888876 343 3333334456788
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccch-hHHHHhhcchhHHHHH
Q 023085 140 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKILNSSKLIKHVL 218 (287)
Q Consensus 140 ~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~-~~~~~~~~~~~~~~~~ 218 (287)
+++|+++.|+.+. ..+.|..||+...+ ....+. .......+++.+++...++...... .++....
T Consensus 225 ~~~~~~~~l~~~~-~d~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------- 290 (369)
T 3zwl_B 225 QFSPDLTYFITSS-RDTNSFLVDVSTLQ--VLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA--------- 290 (369)
T ss_dssp EECTTSSEEEEEE-TTSEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEECCC------------------
T ss_pred EECCCCCEEEEec-CCceEEEEECCCCc--eeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEec---------
Confidence 9999999776665 46789999975432 122222 2234567888888875555543111 1000000
Q ss_pred HhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 219 AAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
......+..++. .++.+..+.... ..+..+... ++++.++.-..+.|.++++
T Consensus 291 ------------~~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 291 ------------NEGKFEARFYHKIFEEEIGRVQGHF----GPLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ----------------CEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred ------------CCCcceeEEEecCCCcchhheeccc----CcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 001124555664 356666665433 246667765 5665566556667777765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-06 Score=74.59 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=117.4
Q ss_pred CCCC-cEEEEec----------CCeEEEEE--CCceEEEEeeC--------CccccCeEECCCC-cEEEEeCC--CceEE
Q 023085 2 DKNG-VIYTATR----------DGWIKRLQ--DGTWVNWKFID--------SQTLVGLTSTKEG-HLIICDNA--NGLHK 57 (287)
Q Consensus 2 d~~G-~l~~~~~----------~g~i~~~~--~~~~~~~~~~~--------~~~~~~i~~d~dg-~l~v~~~~--~gi~~ 57 (287)
++|| .||+++. ++.|..+| +++.......+ ..|. ++++++|| +||+++.. +.|.+
T Consensus 126 SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spDGk~lyV~n~~~~~~VsV 204 (426)
T 3c75_H 126 AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPDNKNLLFYQFSPAPAVGV 204 (426)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTTSSEEEEEECSSSCEEEE
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCCCCEEEEEecCCCCeEEE
Confidence 5677 6999872 45789999 45544333322 4577 99999999 58998743 46999
Q ss_pred Ec-cCC--cEEEeeecCCccccccce----EEEcCCCcEE-EEcCCCCC--------CCcc--------ee---eeeecc
Q 023085 58 VS-EDG--VENFLSYVNGSKLRFAND----VVEASDGSLY-FTVSSSKY--------LPHE--------YC---LDILEG 110 (287)
Q Consensus 58 ~~-~~g--~~~~~~~~~~~~~~~~~~----l~~d~~g~l~-v~~~~~~~--------~~~~--------~~---~~~~~~ 110 (287)
+| .++ ...+. . .+.....|.+ ++..++|.+. +.....+. .... +. ...+..
T Consensus 205 ID~~t~kvv~~I~-v-~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~ 282 (426)
T 3c75_H 205 VDLEGKTFDRMLD-V-PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP 282 (426)
T ss_dssp EETTTTEEEEEEE-C-CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE
T ss_pred EECCCCeEEEEEE-c-CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE
Confidence 99 666 33332 1 1100111222 5566677644 43311111 0000 00 001111
Q ss_pred CCCceEEEEeCCCCeeEEeec----------cccccce---EEEccCCCEEEEEeCC---------CCEEEEEEecCCCC
Q 023085 111 KPHGQLLKYDPSSNITTLVAD----------GFYFANG---VALSRDEDYVVVCESW---------KFRCRKYWLKGERK 168 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~---i~~~~~~~~l~v~~~~---------~~~l~~~~~~~~~~ 168 (287)
...+.|+.+|..++....... ....|.+ ++++++++.+|++... .+.|..+|....+.
T Consensus 283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 123456667665443322211 0012344 7899999999999742 34799999764322
Q ss_pred cceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcE
Q 023085 169 GKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI 246 (287)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~ 246 (287)
...+ ..+..|.++++++||+ +++++... .+.|..+|.. ++.
T Consensus 363 --v~~I--~vg~~P~gia~spDg~~~lyv~n~~---------------------------------s~~VsVID~~t~kv 405 (426)
T 3c75_H 363 --INKI--ELGHEIDSINVSQDAEPLLYALSAG---------------------------------TQTLHIYDAATGEE 405 (426)
T ss_dssp --EEEE--EEEEEECEEEECCSSSCEEEEEETT---------------------------------TTEEEEEETTTCCE
T ss_pred --EEEE--ECCCCcCeEEEccCCCEEEEEEcCC---------------------------------CCeEEEEECCCCCE
Confidence 1111 1223599999999998 66665531 2589999965 677
Q ss_pred EEEE
Q 023085 247 IRNL 250 (287)
Q Consensus 247 ~~~~ 250 (287)
+..+
T Consensus 406 v~tI 409 (426)
T 3c75_H 406 LRSV 409 (426)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7676
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.1e-06 Score=76.17 Aligned_cols=245 Identities=14% Similarity=0.096 Sum_probs=131.7
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cC-----C-cEEEeeecCC
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-----G-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~-----g-~~~~~~~~~~ 72 (287)
.+|+.+.++ .++.|+.++ +++............ .++++|||+..+......|+.++ .+ + ...+......
T Consensus 90 spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 90 AGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred CCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 345555555 458899998 555544444434445 88999999744444456788888 66 7 4443221111
Q ss_pred c----------cccccceEEEcCCCcEEEEcCCCCCCCcceeee-------------ee-c--cCCCceEEEEeCCCCee
Q 023085 73 S----------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD-------------IL-E--GKPHGQLLKYDPSSNIT 126 (287)
Q Consensus 73 ~----------~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~-------------~~-~--~~~~~~v~~~~~~~~~~ 126 (287)
. ....+.++++.++|+..++...-+-....+... .. . ......|+.+|..+++.
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 0 011257889999997444311000000000000 00 0 01235799999988876
Q ss_pred EEeecc---ccccceEEEccCCCEEEEEeCCC----CEEEEEEecCCCCcceeEEec-cCCC---CCcceeeCC--CCCE
Q 023085 127 TLVADG---FYFANGVALSRDEDYVVVCESWK----FRCRKYWLKGERKGKLETFAE-NLPG---APDNINLAP--DGTF 193 (287)
Q Consensus 127 ~~~~~~---~~~~~~i~~~~~~~~l~v~~~~~----~~l~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~~d~--~G~l 193 (287)
..+... ...+..++|+|||+.|+++.... ..|+.+|.++++ ....... .... ....+++.+ +|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~ 325 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLHPLTFLPGSNNQF 325 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccCCceeecCCCCEE
Confidence 554322 23456788999999888865433 378888875431 1222211 1111 135678888 8875
Q ss_pred EEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEE-EEE--eCCE
Q 023085 194 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTS-GLQ--VDNH 270 (287)
Q Consensus 194 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~--~~g~ 270 (287)
.+++... ....|+.++.+++.+..+..... .+.. +.. +++.
T Consensus 326 l~~~~~~--------------------------------g~~~l~~~~~~~~~~~~l~~~~~----~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 326 IWQSRRD--------------------------------GWNHLYLYDTTGRLIRQVTKGEW----EVTNFAGFDPKGTR 369 (706)
T ss_dssp EEEECTT--------------------------------SSCEEEEEETTSCEEEECCCSSS----CEEEEEEECTTSSE
T ss_pred EEEEccC--------------------------------CccEEEEEECCCCEEEecCCCCe----EEEeeeEEcCCCCE
Confidence 4444321 12467777777776666653221 1222 333 3456
Q ss_pred EEEEecCCC----eEEEEeC
Q 023085 271 LYVISLTSN----FIGKVQL 286 (287)
Q Consensus 271 l~i~~~~~~----~i~~~~~ 286 (287)
|++++...+ .|.++++
T Consensus 370 l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp EEEEESSSCTTCBEEEEEET
T ss_pred EEEEecCCCCceEEEEEEEc
Confidence 777766544 6666654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.6e-06 Score=71.16 Aligned_cols=170 Identities=11% Similarity=0.070 Sum_probs=103.1
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCc----------------cccCeEECCCCcEEEEeCCCceEEEc-cC
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQ----------------TLVGLTSTKEGHLIICDNANGLHKVS-ED 61 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~----------------~~~~i~~d~dg~l~v~~~~~gi~~~~-~~ 61 (287)
.++| .|+.++.++.|..|+ +++.......... .. .+.+.+++.++++...+.|..++ .+
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDDDKFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS-CCEEEETTEEEEECGGGCEEEEETTC
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee-EEEEcCCCEEEEEcCCCeEEEEEcCC
Confidence 3456 466777888999998 4443332222111 34 77888888888877656688888 65
Q ss_pred C--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccce
Q 023085 62 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANG 138 (287)
Q Consensus 62 g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ 138 (287)
+ ...+.. ....+..+++.+++.++++. ...+.|..++..+++... +.........
T Consensus 237 ~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 237 KTPTGKLIG-----HHGPISVLEFNDTNKLLLSA-----------------SDDGTLRIWHGGNGNSQNCFYGHSQSIVS 294 (425)
T ss_dssp SSCSEEECC-----CSSCEEEEEEETTTTEEEEE-----------------ETTSCEEEECSSSBSCSEEECCCSSCEEE
T ss_pred Cceeeeecc-----CCCceEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCccceEecCCCccEEE
Confidence 5 444321 12356788999988766642 234678888876554322 3223345577
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++++|++ .++.+ ...+.|..|++...+ ....+. .....+..+++.++|++.++...
T Consensus 295 ~~~~~~~-~l~~~-~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 295 ASWVGDD-KVISC-SMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp EEEETTT-EEEEE-ETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSEEEEEET
T ss_pred EEECCCC-EEEEE-eCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCEEEEEEC
Confidence 8899988 44444 456789999975421 111221 12234567888888876555543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-05 Score=69.17 Aligned_cols=224 Identities=14% Similarity=0.121 Sum_probs=129.6
Q ss_pred CCCC-cEEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcE-EEEeCCCceEEEc-cCC--cEEEeeecCCc--
Q 023085 2 DKNG-VIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYVNGS-- 73 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~~~-- 73 (287)
.++| .|.+++.+|.|..|+ +++..........+...+++.+++++ +.+...+.+..++ .++ ...+.......
T Consensus 117 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred cCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 3456 466777888899998 55443333322233338899999974 4455445677788 666 33332111000
Q ss_pred --------cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccC
Q 023085 74 --------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRD 144 (287)
Q Consensus 74 --------~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 144 (287)
....+..+.+.+++.++++ ...+.|..++..+++... +.........++++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDKFVIP------------------GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp ---------CCCBSCCEEEETTEEEEE------------------CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred eeeccccCCcceeeEEEEcCCCEEEEE------------------cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 0011667777777766553 235678888887655332 2223344567889999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 145 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
++.++.+. ..+.|..|++...+. ...+. ........+++.++| +.++...
T Consensus 259 ~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~-~l~~~~~------------------------- 308 (425)
T 1r5m_A 259 NKLLLSAS-DDGTLRIWHGGNGNS--QNCFY-GHSQSIVSASWVGDD-KVISCSM------------------------- 308 (425)
T ss_dssp TTEEEEEE-TTSCEEEECSSSBSC--SEEEC-CCSSCEEEEEEETTT-EEEEEET-------------------------
T ss_pred CCEEEEEc-CCCEEEEEECCCCcc--ceEec-CCCccEEEEEECCCC-EEEEEeC-------------------------
Confidence 98666665 456788888754321 12221 122345678888888 4443333
Q ss_pred ccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 225 FSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++.+..+..... .+..+... ++++.+.....+.|.++++
T Consensus 309 ---------d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 309 ---------DGSVRLWSLKQNTLLALSIVDGV----PIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp ---------TSEEEEEETTTTEEEEEEECTTC----CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ---------CCcEEEEECCCCcEeEecccCCc----cEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 2577778754 566666654332 45666665 4555555555667888775
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.70 E-value=8.3e-06 Score=70.83 Aligned_cols=222 Identities=12% Similarity=0.060 Sum_probs=127.7
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
++| .|.+++.+|.|..|+ .++..........++..+++.+++++.++ ...+.|..++ .++ ...+... .
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-----~ 181 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-----R 181 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-----S
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-----C
Confidence 455 466667888899998 44433322222223338899999975554 4334577788 666 4444221 2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-----------------------
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----------------------- 132 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------- 132 (287)
..+.++++.+++..+++. ..++.|..+|..+++.......
T Consensus 182 ~~v~~~~~~~~~~~l~s~-----------------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 244 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSA-----------------SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE 244 (420)
T ss_dssp SCEEEEEEETTTTEEEEE-----------------ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGG
T ss_pred CcEEEEEEcCCCCEEEEE-----------------cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeee
Confidence 357889999999876652 2345677777766654332211
Q ss_pred --ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhh
Q 023085 133 --FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILN 209 (287)
Q Consensus 133 --~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~ 209 (287)
......++++|+++.++.+. ..+.|..||+.... ....+..........+++.++|. +.++...
T Consensus 245 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---------- 311 (420)
T 3vl1_A 245 ISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE---------- 311 (420)
T ss_dssp GCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEET----------
T ss_pred cccCcccceEEcCCCCEEEEEc-CCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeC----------
Confidence 01223456778888666655 45679999975431 12222211223466788999887 4444443
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEECCC-C-cEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 210 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-G-TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ + ..+..+....+ ..+..+...+++++++.-..+.|.++++
T Consensus 312 ------------------------dg~i~vwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 312 ------------------------NGMLAQWDLRSPECPVGEFLINEG---TPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp ------------------------TSEEEEEETTCTTSCSEEEEESTT---SCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred ------------------------CCeEEEEEcCCCcCchhhhhccCC---CCceEEEeCCCCEEEEecCCccEEEEec
Confidence 2567777754 3 33455543222 2355555556776666666667777664
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-06 Score=74.04 Aligned_cols=178 Identities=11% Similarity=0.054 Sum_probs=96.9
Q ss_pred CCCCCcEEEEe-c------CCeEEEEE--CCce-----EEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cE
Q 023085 1 MDKNGVIYTAT-R------DGWIKRLQ--DGTW-----VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VE 64 (287)
Q Consensus 1 ~d~~G~l~~~~-~------~g~i~~~~--~~~~-----~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~ 64 (287)
|.+||.+.++. . ++.|..|+ ++.. ........... .+++.+++++.++...+.|..++ .++ ..
T Consensus 50 fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 50 YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGILVASDSGAVELWEILEKESL 128 (357)
T ss_dssp ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEEEEEETTSCEEEC--------
T ss_pred ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCEEEEECCCEEEEeecccccee
Confidence 35788655543 2 55677676 2211 11111122234 78889999988887555566666 444 21
Q ss_pred EEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEcc
Q 023085 65 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSR 143 (287)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~ 143 (287)
.............+.++++.++|...++. ...+.|..+|..+++..... ........+++++
T Consensus 129 ~~~~~~~~~h~~~V~~v~~spdg~~l~sg-----------------s~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSG-----------------GKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp CCCCEEECCCSSCEEEEEECSSSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEeeccCCCCCCEEEEEECCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 11111001112457889999999877752 23567888888877654433 3344567788999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEE
Q 023085 144 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAI 197 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~ 197 (287)
+++.++++....+.|..||+..++........ .....+..+++.+++ ++.++.
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~g 245 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFACG 245 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEEE
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEEEe
Confidence 88766666666678888887543211111111 112235567777764 444443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-05 Score=65.35 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCcc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
.++|. |..++.+|.|..|+ +++..........+...+++.++++++++ ...+.|..++ .++ ...+. .
T Consensus 41 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~----- 114 (369)
T 3zwl_B 41 NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-S----- 114 (369)
T ss_dssp CTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-C-----
T ss_pred cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-c-----
Confidence 45664 66667888999998 45443333222223338899999976555 4334577788 666 33332 1
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe------------eEEeeccc--cccceEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------------TTLVADGF--YFANGVA 140 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~~~~~~~--~~~~~i~ 140 (287)
...+..+++.+++..+++.... .....+.|..++..++. ...+.... .....++
T Consensus 115 ~~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 115 PVPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 2356788999998876642110 00112455555543221 11111111 1456788
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++|+++.++++. ..+.|..|++.... .....+. ........++++++|++.++...
T Consensus 183 ~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 183 WSTKGKYIIAGH-KDGKISKYDVSNNY-EYVDSID-LHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp ECGGGCEEEEEE-TTSEEEEEETTTTT-EEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred EcCCCCEEEEEc-CCCEEEEEECCCCc-EeEEEEe-cCCCceeEEEECCCCCEEEEecC
Confidence 999999777665 45789999975421 1122222 22234677889999876665544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-05 Score=70.05 Aligned_cols=229 Identities=7% Similarity=0.020 Sum_probs=131.8
Q ss_pred CCCC-cEEEEecCCeEEEEE-CC----c-eEE-EEeeCCccccCeEECCC-CcEEEEeCC-CceEEEc-cCCc------E
Q 023085 2 DKNG-VIYTATRDGWIKRLQ-DG----T-WVN-WKFIDSQTLVGLTSTKE-GHLIICDNA-NGLHKVS-EDGV------E 64 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~-~~----~-~~~-~~~~~~~~~~~i~~d~d-g~l~v~~~~-~gi~~~~-~~g~------~ 64 (287)
.++| .|..++.+|.|..|+ .. . ... +........ .+++.++ ++++++... +.|..++ .++. .
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence 3456 466777888999998 32 1 221 222222334 7889988 665555433 4566676 4332 2
Q ss_pred EEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-------cccc
Q 023085 65 NFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------FYFA 136 (287)
Q Consensus 65 ~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~ 136 (287)
.+...........+.++++.++ +.++++. ...+.|..+|..+++....... ....
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASA-----------------GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEE-----------------SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEE-----------------cCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence 2211111112346788999998 5776652 2356788888877665433222 3446
Q ss_pred ceEEEccCCCEEEEEeCCCC---EEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcch
Q 023085 137 NGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~ 212 (287)
..++++|++..++++....+ .|..|++...... ...+.......+..+++.+ ++++.++...
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------------- 283 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKGILSLDWCHQDEHLLLSSGR------------- 283 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSCEEEEEECSSCSSCEEEEES-------------
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCceeEEEeCCCCCCeEEEEeC-------------
Confidence 77899999754444444455 8999997642111 1111101122456788888 7776666554
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CC-EEEEEecCCCeEEEEeCC
Q 023085 213 LIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g-~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|..++.+ ++.+..+....+ .+..+... ++ .++++.-..+.|.++++.
T Consensus 284 ---------------------dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 284 ---------------------DNTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp ---------------------SSEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred ---------------------CCCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 3577788854 667777764332 35556654 44 566666667788887763
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-05 Score=69.59 Aligned_cols=139 Identities=10% Similarity=0.100 Sum_probs=82.6
Q ss_pred CeEECCCCcEE-EEeCC-CceEEEc-c--CC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGHLI-ICDNA-NGLHKVS-E--DG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~l~-v~~~~-~gi~~~~-~--~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+++.++|+.+ ++... +.|..++ . ++ ...+.... ....+.++++.++|...++
T Consensus 107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~----------------- 166 (450)
T 2vdu_B 107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---FSKRPNAISIAEDDTTVII----------------- 166 (450)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---CSSCEEEEEECTTSSEEEE-----------------
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---CCCCceEEEEcCCCCEEEE-----------------
Confidence 78889999864 44323 4466666 5 55 44432211 1235788999999976664
Q ss_pred cCCCceEEEEeCCCCeeE-----EeeccccccceEEEccC---CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCC
Q 023085 110 GKPHGQLLKYDPSSNITT-----LVADGFYFANGVALSRD---EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA 181 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~---~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
+...+.++.++..+++.. .+.........++++|+ ++.|+.+. ..+.|..|++..... ...+...-.+.
T Consensus 167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~d~~i~vwd~~~~~~--~~~~~~~h~~~ 243 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-RDEHIKISHYPQCFI--VDKWLFGHKHF 243 (450)
T ss_dssp EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-TTSCEEEEEESCTTC--EEEECCCCSSC
T ss_pred EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-CCCcEEEEECCCCce--eeeeecCCCCc
Confidence 123567888887655432 12222344567889999 76555554 567899999864321 22222122234
Q ss_pred CcceeeCCCCCEEEEEec
Q 023085 182 PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 182 ~~~i~~d~~G~lwv~~~~ 199 (287)
+..+++. +|++.++...
T Consensus 244 v~~~~~s-d~~~l~s~~~ 260 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGG 260 (450)
T ss_dssp EEEEEEC-STTEEEEEES
T ss_pred eEEEEEC-CCCEEEEEeC
Confidence 6778888 8876665544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-05 Score=65.19 Aligned_cols=221 Identities=10% Similarity=0.057 Sum_probs=126.0
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEE-EE--e-eCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCC
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVN-WK--F-IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNG 72 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~-~~--~-~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~ 72 (287)
+++.|..++.+|.|..|+ +++... .. . ....++..+++.++|++.++ ...+.|..++ .++ +..+..
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~---- 167 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA---- 167 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----
Confidence 567788888999999998 443222 11 1 11223338899999986665 4334577777 666 333321
Q ss_pred ccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee---ccccccceEEEccCCCEE
Q 023085 73 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYV 148 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l 148 (287)
....+..+++.+++ .++++. ..++.|..+|..+++..... ........++++|++..+
T Consensus 168 -h~~~V~~~~~~~~~~~~l~s~-----------------s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 168 -HAAQVTCVAASPHKDSVFLSC-----------------SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp -CSSCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred -cCCceEEEEecCCCCCceeee-----------------ccccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 12457788898877 566652 23567888888766543322 112235678888876556
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
+++....+.|..||+...+. ...+. .-......+++.++|. +.++...
T Consensus 230 l~sg~~dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~fsp~g~~~lasgs~---------------------------- 278 (344)
T 4gqb_B 230 FVFGDENGTVSLVDTKSTSC--VLSSA-VHSQCVTGLVFSPHSVPFLASLSE---------------------------- 278 (344)
T ss_dssp EEEEETTSEEEEEESCC--C--CEEEE-CCSSCEEEEEECSSSSCCEEEEET----------------------------
T ss_pred eEEeccCCcEEEEECCCCcE--EEEEc-CCCCCEEEEEEccCCCeEEEEEeC----------------------------
Confidence 66656678899999764321 12222 1122356788888884 3333332
Q ss_pred cccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 228 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..+|.+...+..+... ...+.++... +.+|..+.-.-..|.+.++
T Consensus 279 ------D~~i~vwd~~~~~~~~~~~H----~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 279 ------DCSLAVLDSSLSELFRSQAH----RDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ------TSCEEEECTTCCEEEEECCC----SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ------CCeEEEEECCCCcEEEEcCC----CCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 24566777665544443321 2346677664 3456544333445555544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-06 Score=66.90 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=98.9
Q ss_pred CCCCcEEEEecCCeEEEEE--C-CceEEEEeeC--CccccCeEECCCCcEEEEeC-----CCceEEEc-cCC-cEEEeee
Q 023085 2 DKNGVIYTATRDGWIKRLQ--D-GTWVNWKFID--SQTLVGLTSTKEGHLIICDN-----ANGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~-~~~~~~~~~~--~~~~~~i~~d~dg~l~v~~~-----~~gi~~~~-~~g-~~~~~~~ 69 (287)
.++|...+...++.|+.++ + ++........ .... .+++.+||+.++... ...|+.++ .++ ...+...
T Consensus 50 spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (297)
T 2ojh_A 50 SPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN 128 (297)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS
T ss_pred CCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC
Confidence 4678644444578899999 4 5554443222 2334 789999997544432 23588887 455 4443221
Q ss_pred cCCccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
..+..+++.++|.. +++... .....||.++..+++...+.........++++|+++.+
T Consensus 129 ------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 187 (297)
T 2ojh_A 129 ------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI 187 (297)
T ss_dssp ------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred ------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence 13566788888874 433110 12236888888767666555444556788999999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCE-EEEEe
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAII 198 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l-wv~~~ 198 (287)
+++.... ..|+.++.++.. ...+. ........++++++|+. .+++.
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGSS---VERIT-DSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp EEEECTTSSCEEEEEETTSSC---EEECC-CCSEEEEEEEECTTSSEEEEEEE
T ss_pred EEEecCCCCccEEEECCCCCC---cEEEe-cCCcccCCeEECCCCCEEEEEEc
Confidence 8776433 456665543321 22221 11123445778899874 44443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-05 Score=69.41 Aligned_cols=211 Identities=16% Similarity=0.107 Sum_probs=117.2
Q ss_pred CCCC-cEEEEec----------CCeEEEEE--CCceEEEEeeC--------CccccCeEECCCCc-EEEEeC--CCceEE
Q 023085 2 DKNG-VIYTATR----------DGWIKRLQ--DGTWVNWKFID--------SQTLVGLTSTKEGH-LIICDN--ANGLHK 57 (287)
Q Consensus 2 d~~G-~l~~~~~----------~g~i~~~~--~~~~~~~~~~~--------~~~~~~i~~d~dg~-l~v~~~--~~gi~~ 57 (287)
++|| .||+++. .+.|..+| +++.......+ ..|. ++++++||+ ||+++. .+.|..
T Consensus 86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDGk~lyVan~~~~~~VsV 164 (386)
T 3sjl_D 86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQFSPAPAVGV 164 (386)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEECSSSCEEEE
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCCCEEEEEEcCCCCeEEE
Confidence 5677 6999862 35688898 45543333222 2677 999999995 899974 356899
Q ss_pred Ec-cCC--cEEEeeecCCccccccce----EEEcCCCcEEEEcCC--CCC--------CCc--------cee---eeeec
Q 023085 58 VS-EDG--VENFLSYVNGSKLRFAND----VVEASDGSLYFTVSS--SKY--------LPH--------EYC---LDILE 109 (287)
Q Consensus 58 ~~-~~g--~~~~~~~~~~~~~~~~~~----l~~d~~g~l~v~~~~--~~~--------~~~--------~~~---~~~~~ 109 (287)
+| .++ ...+. . .+.....|.+ ++..++|.+.+.+.. ++. ... .|. ...++
T Consensus 165 ID~~t~~vv~tI~-v-~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~ 242 (386)
T 3sjl_D 165 VDLEGKAFKRMLD-V-PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW 242 (386)
T ss_dssp EETTTTEEEEEEE-C-CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred EECCCCcEEEEEE-C-CCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE
Confidence 99 676 44442 1 1111112222 355567765443222 221 000 010 01111
Q ss_pred cCCCceEEEEeCCCCeeEEeecc----------cccc---ceEEEccCCCEEEEEeC---------CCCEEEEEEecCCC
Q 023085 110 GKPHGQLLKYDPSSNITTLVADG----------FYFA---NGVALSRDEDYVVVCES---------WKFRCRKYWLKGER 167 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~----------~~~~---~~i~~~~~~~~l~v~~~---------~~~~l~~~~~~~~~ 167 (287)
.+..+.|+.+|..++..+..... .-.| ..++++++++.+|++.. .++.|+.+|....+
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 22234566677654432221110 0112 23778999999999863 13579999976543
Q ss_pred CcceeEEeccCCCCCcceeeCCCCC--EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-C
Q 023085 168 KGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-G 244 (287)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~d~~G~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g 244 (287)
..+ .+. ....|.++++++||+ ||+++.. .+.|..+|.. +
T Consensus 323 v~~--~i~--vg~~~~~lavs~D~~~~ly~tn~~----------------------------------~~~VsViD~~t~ 364 (386)
T 3sjl_D 323 RLA--KFE--MGHEIDSINVSQDEKPLLYALSTG----------------------------------DKTLYIHDAESG 364 (386)
T ss_dssp EEE--EEE--EEEEECEEEECSSSSCEEEEEETT----------------------------------TTEEEEEETTTC
T ss_pred EEE--EEE--CCCCcceEEECCCCCeEEEEEcCC----------------------------------CCeEEEEECCCC
Confidence 221 111 112478999999986 4555543 2578889864 7
Q ss_pred cEEEEEECC
Q 023085 245 TIIRNLVDP 253 (287)
Q Consensus 245 ~~~~~~~~~ 253 (287)
+.+..+..+
T Consensus 365 k~~~~i~~~ 373 (386)
T 3sjl_D 365 EELRSVNQL 373 (386)
T ss_dssp CEEEEECCC
T ss_pred cEEEEecCC
Confidence 888888754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-05 Score=63.79 Aligned_cols=218 Identities=10% Similarity=0.033 Sum_probs=127.7
Q ss_pred CCCc-EEEEecCCeEEEEE--CC--ceEEEEe---eCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecC
Q 023085 3 KNGV-IYTATRDGWIKRLQ--DG--TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 3 ~~G~-l~~~~~~g~i~~~~--~~--~~~~~~~---~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~ 71 (287)
++|. |..++.++.|..|+ .+ ....... ...... .+.+.+++.+..+...+.|..++ .++ ...+..
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~--- 182 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG--- 182 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE-EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC---
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE-EEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC---
Confidence 4554 45566788888888 22 1111111 112223 56667788877776556677788 666 333321
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVV 150 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v 150 (287)
....+.++++.+++.++++. ..++.|..+|..+++... +.........++++|+++.+..
T Consensus 183 --h~~~v~~~~~~~~~~~l~sg-----------------~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 243 (340)
T 1got_B 183 --HTGDVMSLSLAPDTRLFVSG-----------------ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243 (340)
T ss_dssp --CSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --CCCceEEEEECCCCCEEEEE-----------------eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence 12357889999999888752 235678888877665433 3333445678899999986655
Q ss_pred EeCCCCEEEEEEecCCCCcceeEEecc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 151 CESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
+. ..+.|..||+...+ ....+... .......+++.++|++.++...
T Consensus 244 ~s-~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------------------------------ 290 (340)
T 1got_B 244 GS-DDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYD------------------------------ 290 (340)
T ss_dssp EE-TTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEET------------------------------
T ss_pred Ec-CCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECC------------------------------
Confidence 54 56789999875321 11222111 1113456788999987777665
Q ss_pred cCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 230 TLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 230 ~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
.+.|..++. .++.+..+....+ .+.++... ++++.+++-....|.+.
T Consensus 291 ----d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 291 ----DFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ----CCeEEEEEcccCcEeeEeecCCC----cEEEEEEcCCCCEEEEEcCCccEEec
Confidence 356777774 4666666664332 46667665 45443433333445443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-05 Score=66.60 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=87.3
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEee-CCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~-~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.+++. |..++.+|.|..|+ +++....... ..... .+++.++|++.++... +.|..++ .++ +..+. +
T Consensus 117 ~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~----~- 190 (410)
T 1vyh_C 117 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH----G- 190 (410)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC----C-
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc----C-
Confidence 34554 55566889999999 5554433322 22334 8899999986655433 4466666 444 22221 1
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEe
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
....+.++++.++|..+++. ..++.|..+|..++.. ..+.........+.++++++.+..+.
T Consensus 191 h~~~V~~v~~~p~~~~l~s~-----------------s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 191 HDHNVSSVSIMPNGDHIVSA-----------------SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 12467889999999877752 3456788888876653 33333344556778899998555554
Q ss_pred CCCCEEEEEEecC
Q 023085 153 SWKFRCRKYWLKG 165 (287)
Q Consensus 153 ~~~~~l~~~~~~~ 165 (287)
..+.|..|++..
T Consensus 254 -~D~~v~vwd~~~ 265 (410)
T 1vyh_C 254 -NDQTVRVWVVAT 265 (410)
T ss_dssp -TTSCEEEEETTT
T ss_pred -CCCeEEEEECCC
Confidence 567788888754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-05 Score=66.32 Aligned_cols=192 Identities=13% Similarity=0.113 Sum_probs=102.5
Q ss_pred CCCCc-EEEEec-CC--eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCC
Q 023085 2 DKNGV-IYTATR-DG--WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~-l~~~~~-~g--~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
.+||. |.+.+. ++ .|+.++ +++.............+.++.+||+ |+++.....|++++ .++ ...+......
T Consensus 44 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 44 TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh
Confidence 46774 666665 44 488888 5555544433332221578999995 66665455799999 666 4444332111
Q ss_pred ccccccceEEEcCCCcEEEEcCC--CCCC-Cccee--eeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc-CCC
Q 023085 73 SKLRFANDVVEASDGSLYFTVSS--SKYL-PHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-DED 146 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~--~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 146 (287)
.........+++|.+.++... .++. ...|. .+.........|+.+|..+++...+.........+.++| |++
T Consensus 124 --~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~ 201 (388)
T 3pe7_A 124 --WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDS 201 (388)
T ss_dssp --EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEE
T ss_pred --cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCC
Confidence 001112234677876653110 0000 00000 000111234679999998888776655444557788999 998
Q ss_pred EEEEEeCC-----CCEEEEEEecCCCCcceeEEeccCCC-CCcceeeCCCCC-EEEEEe
Q 023085 147 YVVVCESW-----KFRCRKYWLKGERKGKLETFAENLPG-APDNINLAPDGT-FWIAII 198 (287)
Q Consensus 147 ~l~v~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~G~-lwv~~~ 198 (287)
.|.++... ...|+.++.++... ..+.....+ .....++.+||+ |...+.
T Consensus 202 ~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 202 TVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred EEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCcccccceECCCCCEEEEEec
Confidence 77665543 33788888754321 111111110 123467889986 544443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00013 Score=60.68 Aligned_cols=141 Identities=9% Similarity=0.052 Sum_probs=85.8
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCcc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
.++|. |..++.+|.|..|+ ++...........+...+.+.+++++.++ ...+.|..++ .++ ...+.. .
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-----h 96 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-----H 96 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-----C
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC-----C
Confidence 46775 55666889999999 44433322222233337788888876555 4334577777 666 333321 1
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-eeEE-eeccccccceEEEccC-CCEEEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTL-VADGFYFANGVALSRD-EDYVVVC 151 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~~~~~~~~~~i~~~~~-~~~l~v~ 151 (287)
...+.++++.+++.+.++. ..++.|..+|..++ .... +.........++++|+ +. ++++
T Consensus 97 ~~~v~~~~~~~~~~~l~sg-----------------s~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s 158 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSG-----------------SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFAS 158 (304)
T ss_dssp SSCEEEEEECSSSSEEEEE-----------------ETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT-EEEE
T ss_pred CCcEEEEEEcCCCCEEEEE-----------------CCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC-EEEE
Confidence 2457889999999877752 23566777776544 3322 2233344577889984 55 4455
Q ss_pred eCCCCEEEEEEecC
Q 023085 152 ESWKFRCRKYWLKG 165 (287)
Q Consensus 152 ~~~~~~l~~~~~~~ 165 (287)
....+.|..||+..
T Consensus 159 gs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQ 172 (304)
T ss_dssp EETTSEEEEEETTC
T ss_pred EeCCCeEEEEECCC
Confidence 55667899999753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00017 Score=62.39 Aligned_cols=222 Identities=13% Similarity=0.084 Sum_probs=123.1
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEee-CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeecCCcc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~-~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~ 74 (287)
.++|. |..++.++.|..|+ +++....... ..... .+++.++++..++ ...+.|..++ +++ .......
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----- 205 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI----- 205 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-----
Confidence 35664 55666888899999 4443333222 22334 7889999975555 4334567777 666 3222111
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--------ccccccceEEEccCC
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--------DGFYFANGVALSRDE 145 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~ 145 (287)
...+..+++.+ +|.++++. ..++.|..+|..+++..... ........++++|++
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~-----------------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEE-----------------ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred CCCcEEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence 12456778887 77777652 23466777887766543221 112335678899999
Q ss_pred CEEEEEeCCCCEEEEEEecCCCC---------ccee-EEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHH
Q 023085 146 DYVVVCESWKFRCRKYWLKGERK---------GKLE-TFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK 215 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~---------~~~~-~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~ 215 (287)
+.|+.+. ..+.|..|++..... .... .+. .-......+++.+++.+.++...
T Consensus 269 ~~l~s~s-~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~---------------- 330 (393)
T 1erj_A 269 QSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSK---------------- 330 (393)
T ss_dssp SEEEEEE-TTSEEEEEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEET----------------
T ss_pred CEEEEEe-CCCEEEEEECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeC----------------
Confidence 8665554 567888898753211 0000 111 11122445777777765555443
Q ss_pred HHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-------CCEEEEEecCCCeEEEEeC
Q 023085 216 HVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++.+..+....+ .+.++... ++.+++++-....|.+.++
T Consensus 331 ------------------D~~v~iwd~~~~~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 331 ------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred ------------------CCeEEEEECCCCeEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 3567777754 666666654332 34555543 3556565555556666553
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-05 Score=66.41 Aligned_cols=177 Identities=10% Similarity=0.016 Sum_probs=107.1
Q ss_pred CCCC--cEEEEecCCeEEEEE--CCceEEEEe---eCCccccCeEECC-CCcEEEE-eCCCceEEEc-cCC-cEEEeeec
Q 023085 2 DKNG--VIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTK-EGHLIIC-DNANGLHKVS-EDG-VENFLSYV 70 (287)
Q Consensus 2 d~~G--~l~~~~~~g~i~~~~--~~~~~~~~~---~~~~~~~~i~~d~-dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~ 70 (287)
.++| .|..++.+|.|..|+ +++...... ...... .+++.+ +++++++ ...+.|..++ .+. ...+....
T Consensus 82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 160 (383)
T 3ei3_B 82 HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD 160 (383)
T ss_dssp CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC
T ss_pred CCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC
Confidence 3455 566777889999999 444444332 222334 788888 5554444 4444577777 444 44443221
Q ss_pred CCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEE
Q 023085 71 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 150 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v 150 (287)
.....+..+++.+++.++++ +...+.|..+|.....+..+.........++++|+++.+++
T Consensus 161 --~~~~~v~~~~~~~~~~~l~~-----------------~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 161 --SWDYWYCCVDVSVSRQMLAT-----------------GDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp --CSSCCEEEEEEETTTTEEEE-----------------EETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred --CCCCCeEEEEECCCCCEEEE-----------------ECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 11235778999999987765 23456788888864455555444556778999999984444
Q ss_pred EeCCCCEEEEEEecCCCC-cceeEEeccCCCCCcceeeCC-CCCEEEEEec
Q 023085 151 CESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAP-DGTFWIAIIK 199 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~ 199 (287)
+....+.|..||+..... ....... ........+++++ +|++.++...
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 444567899999864221 1121111 2233467788999 8876665543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-05 Score=66.13 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=101.2
Q ss_pred CCCcEEEEec-C------CeEEEEE--CCceEEEEeeCC----ccccCeEECCCCcEEEEeC------------------
Q 023085 3 KNGVIYTATR-D------GWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGHLIICDN------------------ 51 (287)
Q Consensus 3 ~~G~l~~~~~-~------g~i~~~~--~~~~~~~~~~~~----~~~~~i~~d~dg~l~v~~~------------------ 51 (287)
++| ||++.. + |+|..+| +.+......... .++ ++.+.+++++++++.
T Consensus 147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~ 224 (462)
T 2ece_A 147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD 224 (462)
T ss_dssp SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccccccchhhhhh
Confidence 567 888662 2 6899999 344433222221 233 566788888666652
Q ss_pred --CCceEEEc-cCC--cEEEeeecCCccccccceEEE--cCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC
Q 023085 52 --ANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVE--ASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 123 (287)
Q Consensus 52 --~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~--d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 123 (287)
.+.|..++ .++ ...+. . +.....|..|.+ +++|. +|++..- .....++.|+.+..+.
T Consensus 225 ~~~d~V~v~D~~~~k~~~tI~-v--g~~g~~P~~i~f~~~Pdg~~aYV~~e~------------~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKRIHSLT-L--GEENRMALELRPLHDPTKLMGFINMVV------------SLKDLSSSIWLWFYED 289 (462)
T ss_dssp HSCCEEEEEETTTTEEEEEEE-S--CTTEEEEEEEEECSSTTCCEEEEEEEE------------ETTTCCEEEEEEEEET
T ss_pred ccCCEEEEEECCCCcEeeEEe-c--CCCCCccceeEeeECCCCCEEEEEEee------------eccCCCceEEEEEecC
Confidence 35688888 555 33332 1 111224556655 88874 6775420 0000233444332222
Q ss_pred CeeEEee-----c-----c-----------ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-----
Q 023085 124 NITTLVA-----D-----G-----------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN----- 177 (287)
Q Consensus 124 ~~~~~~~-----~-----~-----------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~----- 177 (287)
+++.... . . ...|.+|.+++|++.||+++...+.|.+|++.+....+.......
T Consensus 290 g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~ 369 (462)
T 2ece_A 290 GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH 369 (462)
T ss_dssp TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec
Confidence 4322211 0 0 135788999999999999999999999999863321221111111
Q ss_pred ---------CCCCCcceeeCCCCC-EEEEE
Q 023085 178 ---------LPGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 178 ---------~~~~~~~i~~d~~G~-lwv~~ 197 (287)
..+.|.++++++||+ ||+++
T Consensus 370 ~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 370 RADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 113599999999995 77766
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-06 Score=71.63 Aligned_cols=87 Identities=5% Similarity=-0.121 Sum_probs=58.1
Q ss_pred CcEEEEecC-C----eEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeC----------CCceEEEc-cCC--c
Q 023085 5 GVIYTATRD-G----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN----------ANGLHKVS-EDG--V 63 (287)
Q Consensus 5 G~l~~~~~~-g----~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~----------~~gi~~~~-~~g--~ 63 (287)
..+|+.+.. + .|..+| +++..........| ++++++|| ++|+++. .+.|..+| .++ .
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 578888743 3 788888 55555444455556 79999999 6999973 23489999 666 4
Q ss_pred EEEeeecCCc---cccccceEEEcCCC-cEEEEcC
Q 023085 64 ENFLSYVNGS---KLRFANDVVEASDG-SLYFTVS 94 (287)
Q Consensus 64 ~~~~~~~~~~---~~~~~~~l~~d~~g-~l~v~~~ 94 (287)
..+. ...+. ....|..++++++| .+|+++.
T Consensus 110 ~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~ 143 (368)
T 1mda_H 110 ADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp EEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred EEEE-CCCccccccCCCcceEEEcCCCCEEEEEcc
Confidence 4432 11000 12468899999998 6899864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.5e-05 Score=70.99 Aligned_cols=222 Identities=9% Similarity=0.026 Sum_probs=126.0
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEE-EeCCCceEEEc-cCC--cEEEeeecCCcc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v-~~~~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
.++|. |.+++.+|.|..|+ +++..........+...+++.++|++.+ +...+.|..++ .++ ...+...
T Consensus 22 sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----- 96 (814)
T 3mkq_A 22 HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH----- 96 (814)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-----
Confidence 46674 66677888999999 4544333332233333889999997544 44444577777 666 3333211
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-eeE-EeeccccccceEEEcc-CCCEEEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITT-LVADGFYFANGVALSR-DEDYVVVC 151 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~~~~~~~i~~~~-~~~~l~v~ 151 (287)
...+..+++.++|...++. ...+.|..++.+++ ... .+.........++++| +++.++.+
T Consensus 97 ~~~v~~~~~s~~~~~l~~~-----------------~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSG-----------------SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp SSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEE-----------------cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 2357889999999766541 23467777776544 332 2233334567788999 66655554
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC--CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP--DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~--~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
...+.|..|++..... ...+..........+++.+ +|.+.++...
T Consensus 160 -~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------------------------------ 206 (814)
T 3mkq_A 160 -CLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASD------------------------------ 206 (814)
T ss_dssp -ETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECT------------------------------
T ss_pred -eCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEeC------------------------------
Confidence 4567899999754321 1122212223456677776 7766655544
Q ss_pred cCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 230 TLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 230 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.. ++.+..+....+ .+..+... ++.+.+.....+.|.++++
T Consensus 207 ----dg~i~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 207 ----DLTIKIWDYQTKSCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp ----TSEEEEEETTTTEEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred ----CCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 2466666643 555555553322 35555554 3443343334455666554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-05 Score=69.70 Aligned_cols=140 Identities=10% Similarity=-0.023 Sum_probs=84.1
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeecCCcccc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
++| .|+.++.++.|..|+ +++........ ......++.++++++++ ...+.|..++ .++ ...... ....
T Consensus 66 ~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~ 140 (420)
T 3vl1_A 66 KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ----AHVS 140 (420)
T ss_dssp EEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT----SSSS
T ss_pred ecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc----cccC
Confidence 344 577777888888888 22111111111 11213356788865544 4444577777 555 333211 1234
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+.++++.+++.++++ +..++.|..+|..+++. ..+.........++++|+++.|+.+. ..
T Consensus 141 ~v~~~~~~~~~~~l~s-----------------~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d 202 (420)
T 3vl1_A 141 EITKLKFFPSGEALIS-----------------SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS-LD 202 (420)
T ss_dssp CEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE-TT
T ss_pred ccEEEEECCCCCEEEE-----------------EeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc-CC
Confidence 6788999999987664 22356788888776653 33333445567889999998666555 45
Q ss_pred CEEEEEEecC
Q 023085 156 FRCRKYWLKG 165 (287)
Q Consensus 156 ~~l~~~~~~~ 165 (287)
+.|..||+..
T Consensus 203 ~~v~iwd~~~ 212 (420)
T 3vl1_A 203 GTIRLWECGT 212 (420)
T ss_dssp SCEEEEETTT
T ss_pred CcEEEeECCC
Confidence 6788898754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00024 Score=59.68 Aligned_cols=167 Identities=12% Similarity=0.077 Sum_probs=100.9
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEee---CCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCcccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
.|..|+.++.|..|+ +++....... ..... .+.+.+++.+.++... +.|..++ .++ ...+... ..
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~-~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~-----~~ 123 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG-----PV 123 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----TT
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE-EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC-----Cc
Confidence 455666888888887 4443322111 12223 6788888876665433 4566777 666 3333211 13
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+..+++.++|...++. ...+.+..++..+++... +.........++++|+++.|..+. ..
T Consensus 124 ~~~~~~~spdg~~l~~g-----------------~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~-~d 185 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATG-----------------THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA-ID 185 (321)
T ss_dssp CCCCEEECTTSSEEEEE-----------------CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE-TT
T ss_pred cEEEEEECCCCCEEEEE-----------------cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc-CC
Confidence 46678999999877752 335678888876655432 233334567789999999766665 45
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..||+...+ ....+. .-......+++.++|++.++...
T Consensus 186 g~i~iwd~~~~~--~~~~~~-~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 186 GIINIFDIATGK--LLHTLE-GHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp SCEEEEETTTTE--EEEEEC-CCSSCCCEEEECTTSCEEEEECT
T ss_pred CeEEEEECCCCc--EEEEEc-ccCCceeEEEEcCCCCEEEEEcC
Confidence 779999975431 112221 12234677899999986666544
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-05 Score=71.61 Aligned_cols=151 Identities=17% Similarity=0.277 Sum_probs=86.2
Q ss_pred CCCCC--cEEEEecCCeEEEEE-CCce--EEEEee------------CCccccCeEECCC----CcEEEEeCC-------
Q 023085 1 MDKNG--VIYTATRDGWIKRLQ-DGTW--VNWKFI------------DSQTLVGLTSTKE----GHLIICDNA------- 52 (287)
Q Consensus 1 ~d~~G--~l~~~~~~g~i~~~~-~~~~--~~~~~~------------~~~~~~~i~~d~d----g~l~v~~~~------- 52 (287)
+.++| +||++...|+|+.++ ++.. ..+... ..... +|+++|+ +.||++-..
T Consensus 21 ~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n~~lYv~yt~~~~~~~~ 99 (463)
T 2wg3_C 21 HSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKNGKLYVSYTTNQERWAI 99 (463)
T ss_dssp CCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHHCEEEEEEEECCCSSCS
T ss_pred ECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCCCEEEEEEeCCCCCccc
Confidence 35677 499999999999998 4432 111111 11234 7899985 889988321
Q ss_pred ------CceEEEc-cC--------C-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcce-eeeeeccCCCce
Q 023085 53 ------NGLHKVS-ED--------G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY-CLDILEGKPHGQ 115 (287)
Q Consensus 53 ------~gi~~~~-~~--------g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~-~~~~~~~~~~~~ 115 (287)
..|.++. .. . .+.+.........+....|++++||.|||+....-...... ... ......+.
T Consensus 100 ~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q-~~~~~~Gk 178 (463)
T 2wg3_C 100 GPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMD-GLSDFTGS 178 (463)
T ss_dssp SSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCT-TCCSCTTE
T ss_pred CCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCcccccc-CcCCCCee
Confidence 2466665 21 1 12333221112234566799999999999843310000000 000 01223578
Q ss_pred EEEEeCCCC--------------------eeEEeeccccccceEEEccC-----CC-EEEEEeC
Q 023085 116 LLKYDPSSN--------------------ITTLVADGFYFANGVALSRD-----ED-YVVVCES 153 (287)
Q Consensus 116 v~~~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~-----~~-~l~v~~~ 153 (287)
|+|++++.. ..+.++..+..|.+++|+|+ |+ .+|.++.
T Consensus 179 IlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 179 VLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp EEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred EEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence 999999842 12345566778999999997 33 4666764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-05 Score=74.94 Aligned_cols=191 Identities=10% Similarity=0.043 Sum_probs=102.4
Q ss_pred CCCCc-EEEEecCCeEEEEE--CC---ceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DG---TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~---~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~ 73 (287)
.+||. |.+++. +.|+.++ ++ ....+........ .+++.|||+..+......|+.++ .++ ...+.......
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence 46775 555554 8899998 44 4444333333344 78899999744433345799998 566 44443211100
Q ss_pred ------------cccccceEEEcCCCc-EEEEcCCCCCCCccee-------------eeee-ccC--CCceEEEEeCCC-
Q 023085 74 ------------KLRFANDVVEASDGS-LYFTVSSSKYLPHEYC-------------LDIL-EGK--PHGQLLKYDPSS- 123 (287)
Q Consensus 74 ------------~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~-------------~~~~-~~~--~~~~v~~~~~~~- 123 (287)
....+..+++++||+ |+++..... ....+. .... .+. ....|+.+|..+
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 011246789999986 544321100 000000 0000 000 112688888887
Q ss_pred CeeEEeec---cccccceEEEccCCCEEEEEeC----CCCEEEEEEecCCCCcceeEEeccCCC---CCcceeeCCCCCE
Q 023085 124 NITTLVAD---GFYFANGVALSRDEDYVVVCES----WKFRCRKYWLKGERKGKLETFAENLPG---APDNINLAPDGTF 193 (287)
Q Consensus 124 ~~~~~~~~---~~~~~~~i~~~~~~~~l~v~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~d~~G~l 193 (287)
++...+.. .......++| |||+.|++... ....|+.+|.++.+.. ..+.....+ ....+++.+||++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR--VLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE--EEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE--EEEEcCCCCcCCcCCceEECCCCeE
Confidence 76554432 2234567889 99998887753 2346888887643211 111111111 2357888999986
Q ss_pred EEEEe
Q 023085 194 WIAII 198 (287)
Q Consensus 194 wv~~~ 198 (287)
.+++.
T Consensus 351 ~~~~~ 355 (741)
T 2ecf_A 351 LWSSE 355 (741)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00041 Score=59.99 Aligned_cols=217 Identities=10% Similarity=-0.024 Sum_probs=125.6
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEee-CCccccCeEECCCCcEEE-EeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~-~~~~~~~i~~d~dg~l~v-~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
+.+..++.++.|..|+ +++....... ...++..+++.++|++.+ +...+.|..++ .++ ...+.. ....
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~ 178 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-----HQAR 178 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-----CSSC
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-----CCCc
Confidence 4677777889999999 5665544443 233333889999997544 44444577777 555 333321 1234
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-Ce-eEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI-TTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
+.++..+ +.++++ +...+.|..+|... +. +..+.........++++|+++.++.+. ..
T Consensus 179 v~~~~~~--~~~l~~-----------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d 238 (401)
T 4aez_A 179 VGCLSWN--RHVLSS-----------------GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG-ND 238 (401)
T ss_dssp EEEEEEE--TTEEEE-----------------EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred eEEEEEC--CCEEEE-----------------EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe-CC
Confidence 5667663 455553 22356788888762 22 333334445567889999998666665 45
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (287)
+.|..||+.... ....+. ........+++.+++ ++.++... ...
T Consensus 239 ~~v~iwd~~~~~--~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~g--------------------------------s~d 283 (401)
T 4aez_A 239 NVVQIWDARSSI--PKFTKT-NHNAAVKAVAWCPWQSNLLATGGG--------------------------------TMD 283 (401)
T ss_dssp SCEEEEETTCSS--EEEEEC-CCSSCCCEEEECTTSTTEEEEECC--------------------------------TTT
T ss_pred CeEEEccCCCCC--ccEEec-CCcceEEEEEECCCCCCEEEEecC--------------------------------CCC
Confidence 789999975421 111221 223346788999876 45554431 113
Q ss_pred eEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEE--ecCCCeEEEEeC
Q 023085 235 AHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVI--SLTSNFIGKVQL 286 (287)
Q Consensus 235 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~--~~~~~~i~~~~~ 286 (287)
+.|..++.+ ++.+..+... ..+..+... +++..+. +...+.|.++++
T Consensus 284 ~~i~i~d~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 284 KQIHFWNAATGARVNTVDAG-----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp CEEEEEETTTCCEEEEEECS-----SCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCC-----CcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 467777753 6666666532 135666654 4444444 334566766654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-05 Score=74.67 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=79.2
Q ss_pred CCCCc-EEEEec-CC-----eEEEEE--CCceEEEEeeCC-c-----------------------cccCeEECCCCcEEE
Q 023085 2 DKNGV-IYTATR-DG-----WIKRLQ--DGTWVNWKFIDS-Q-----------------------TLVGLTSTKEGHLII 48 (287)
Q Consensus 2 d~~G~-l~~~~~-~g-----~i~~~~--~~~~~~~~~~~~-~-----------------------~~~~i~~d~dg~l~v 48 (287)
.+||. |++++. ++ .|+.++ +++......... . ....+++++||+..+
T Consensus 45 SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~ 124 (741)
T 2ecf_A 45 APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLL 124 (741)
T ss_dssp CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEE
T ss_pred ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEE
Confidence 46784 777775 66 788888 565554443211 1 123789999997444
Q ss_pred EeCCCceEEEc-cCCc--EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe
Q 023085 49 CDNANGLHKVS-EDGV--ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI 125 (287)
Q Consensus 49 ~~~~~gi~~~~-~~g~--~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 125 (287)
......|+.++ .++. ... .... ....+..+++.++|+..+.. ..+.|+.++..+++
T Consensus 125 ~~~~~~i~~~d~~~~~~~~~~-~l~~--~~~~~~~~~~SPDG~~la~~------------------~~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 125 FPLGGELYLYDLKQEGKAAVR-QLTH--GEGFATDAKLSPKGGFVSFI------------------RGRNLWVIDLASGR 183 (741)
T ss_dssp EEETTEEEEEESSSCSTTSCC-BCCC--SSSCEEEEEECTTSSEEEEE------------------ETTEEEEEETTTTE
T ss_pred EEeCCcEEEEECCCCCcceEE-Eccc--CCcccccccCCCCCCEEEEE------------------eCCcEEEEecCCCC
Confidence 33345688888 4331 111 1111 11346778999999844421 12479999988777
Q ss_pred eEEeeccccc-----------------cceEEEccCCCEEEEEeC
Q 023085 126 TTLVADGFYF-----------------ANGVALSRDEDYVVVCES 153 (287)
Q Consensus 126 ~~~~~~~~~~-----------------~~~i~~~~~~~~l~v~~~ 153 (287)
...+...... +..++|+|||+.|+++..
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI 228 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence 6655332211 467899999998887754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.49 E-value=9.7e-05 Score=64.73 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=99.7
Q ss_pred cEEEEecCCeEEEEE-CC-----------ce-EEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC---cEEE
Q 023085 6 VIYTATRDGWIKRLQ-DG-----------TW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG---VENF 66 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~~-----------~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g---~~~~ 66 (287)
.|..++.+|.|..|+ .. .. ..+........ ++++.+++. ++++... +.|..++ ..+ ...+
T Consensus 143 ~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 221 (430)
T 2xyi_A 143 VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI 221 (430)
T ss_dssp EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE
T ss_pred EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee
Confidence 355566788899998 31 11 12222233345 899999886 5555433 4577777 442 1111
Q ss_pred ee-ecCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe----eEEeeccccccceEE
Q 023085 67 LS-YVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVADGFYFANGVA 140 (287)
Q Consensus 67 ~~-~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~i~ 140 (287)
.. .........+.++++.+ ++.++++. ...+.|..+|..++. +..+......++.++
T Consensus 222 ~~~~~~~~h~~~v~~v~~~p~~~~~l~s~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSV-----------------ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp ECSEEECCCSSCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred ccceeecCCCCCEeeeEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 11 00011224578899988 56777652 235678888876542 222333345567899
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEe
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 198 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~ 198 (287)
++|+++.++++....+.|..|++.... .....+. ...+....+++.+++. +++++.
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLK-LKLHSFE-SHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEE-CCSSCEEEEEECSSCTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEee-cCCCCEEEEEECCCCCCEEEEEe
Confidence 999998777766677889999976421 1122222 1223456788888884 555544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00019 Score=61.49 Aligned_cols=225 Identities=10% Similarity=-0.009 Sum_probs=130.9
Q ss_pred cEEEEecCCeEEEEE--CCc------eEEEEeeC-----CccccCeEEC----CCCcE-EEE-eCCCceEEEc-cC----
Q 023085 6 VIYTATRDGWIKRLQ--DGT------WVNWKFID-----SQTLVGLTST----KEGHL-IIC-DNANGLHKVS-ED---- 61 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~------~~~~~~~~-----~~~~~~i~~d----~dg~l-~v~-~~~~gi~~~~-~~---- 61 (287)
.|..++.+|.|..|+ +++ ...+.... .... .+++. +++++ +++ ...+.|..++ ..
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 455666888898888 444 33333221 3334 78888 88875 444 4444577777 55
Q ss_pred --C--cE-----EEeee--cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee
Q 023085 62 --G--VE-----NFLSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 62 --g--~~-----~~~~~--~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 130 (287)
+ .. .+... ........+.++++.+++ ++++ +...+.|..+|..+++.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-----------------~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-----------------GFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-----------------ECTTSEEEEEETTTTEEEEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-----------------EeCCCcEEEEECCCCceeEEE
Confidence 4 33 33210 001123467889999999 5554 234577888988766644333
Q ss_pred cc-------ccccceEEEccCCCEEEEEeCCC---CEEEEEEecCCCCcceeEEecc------------CCCCCcceeeC
Q 023085 131 DG-------FYFANGVALSRDEDYVVVCESWK---FRCRKYWLKGERKGKLETFAEN------------LPGAPDNINLA 188 (287)
Q Consensus 131 ~~-------~~~~~~i~~~~~~~~l~v~~~~~---~~l~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~d 188 (287)
.. ......++++|+++.++++.. . +.|..|++...+ ....+... .......+++.
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred eccccccccCCccceEEECCCCCEEEEEec-CCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEEEEC
Confidence 22 445678899999997666653 4 678899875432 11222110 12345678889
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEE------CC-----CCc
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLV------DP-----TGQ 256 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~------~~-----~~~ 256 (287)
++|++.++... .+.|..++.+ ++.+..+. .. .|.
T Consensus 301 ~~~~~l~~~~~----------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 301 DSGETLCSAGW----------------------------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp SSSSEEEEEET----------------------------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred CCCCEEEEEeC----------------------------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 98876666554 3567777754 66666666 21 000
Q ss_pred c------ccceEEEEEe-CC----------EEEEEecCCCeEEEEeC
Q 023085 257 L------MSFVTSGLQV-DN----------HLYVISLTSNFIGKVQL 286 (287)
Q Consensus 257 ~------~~~~~~~~~~-~g----------~l~i~~~~~~~i~~~~~ 286 (287)
. ...+..+... ++ ++++++-..+.|.++++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 0 2346777775 44 56666666778888775
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00049 Score=59.14 Aligned_cols=138 Identities=9% Similarity=-0.031 Sum_probs=77.3
Q ss_pred CCceEEEEeCCC-Ce-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc------CCCCCc
Q 023085 112 PHGQLLKYDPSS-NI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN------LPGAPD 183 (287)
Q Consensus 112 ~~~~v~~~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~ 183 (287)
.++.|..+|... ++ +..+.......+.++++|+++.+ ++.+..+.|..||+..+. ....+... ......
T Consensus 226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE-EEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCS
T ss_pred CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE-EEEcCCCeEEEEECCCCc--EEEEecccccccccccCceE
Confidence 345677777642 22 23333334456789999999854 444556789999975431 11122111 011246
Q ss_pred ceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceE
Q 023085 184 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVT 262 (287)
Q Consensus 184 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 262 (287)
.+++.++|++.++... .+.|..+|.. ++....+......-...+.
T Consensus 303 ~~~~s~~g~~l~~g~~----------------------------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYS----------------------------------NGDCYVWDTLLAEMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp EEEECSSSSEEEEECT----------------------------------TSCEEEEETTTCCEEEEECCSCSSCCCCCC
T ss_pred EEEECCCCCEEEEEEC----------------------------------CCCEEEEECCCCceEEEEecccCCCCCceE
Confidence 7889999987777654 3567777753 5555555321111133567
Q ss_pred EEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 263 SGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 263 ~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
++... ++...+++-....|.+.++
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEC
T ss_pred EEEECCCCCEEEEeeCCCCEEEEec
Confidence 77765 5555555545566766665
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00015 Score=65.94 Aligned_cols=222 Identities=9% Similarity=0.026 Sum_probs=127.1
Q ss_pred CC-cEEEEecCCeEEEEE--CC------ceEEEE--eeCCccccCeEECCCCcEEEEeCCC-----ceEEEccCC-cEEE
Q 023085 4 NG-VIYTATRDGWIKRLQ--DG------TWVNWK--FIDSQTLVGLTSTKEGHLIICDNAN-----GLHKVSEDG-VENF 66 (287)
Q Consensus 4 ~G-~l~~~~~~g~i~~~~--~~------~~~~~~--~~~~~~~~~i~~d~dg~l~v~~~~~-----gi~~~~~~g-~~~~ 66 (287)
+| .|..++.+|.|..|+ ++ ...... .....+...+++.++|+..++.... .|+.++... ...+
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~ 156 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV 156 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceee
Confidence 66 466677888898888 33 222221 1122233388999999765553232 244444222 3332
Q ss_pred eeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-ccc---ccceEEE
Q 023085 67 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFY---FANGVAL 141 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~---~~~~i~~ 141 (287)
. .....+..+++.+++. ++++ +...+.|..+|..+++...... ... ....+++
T Consensus 157 ~-----~~~~~v~~~~~~~~~~~~l~~-----------------~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (615)
T 1pgu_A 157 S-----GHSQRINACHLKQSRPMRSMT-----------------VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 214 (615)
T ss_dssp C-----SCSSCEEEEEECSSSSCEEEE-----------------EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred e-----cCCccEEEEEECCCCCcEEEE-----------------EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE
Confidence 1 1224678899999986 5554 2235678888887666544332 233 4667899
Q ss_pred ccC-CCEEEEEeCCCCEEEEEEecCCCCcceeEEec---cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHH
Q 023085 142 SRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAE---NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 217 (287)
Q Consensus 142 ~~~-~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 217 (287)
+|+ ++.++.+. ..+.|..|++...+ ....+.. ........+++. ++++.++...
T Consensus 215 ~~~~~~~l~~~~-~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------------------ 272 (615)
T 1pgu_A 215 SPDSGEFVITVG-SDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA------------------ 272 (615)
T ss_dssp CSTTCCEEEEEE-TTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEET------------------
T ss_pred CCCCCCEEEEEe-CCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcC------------------
Confidence 999 88666665 45789999975432 1122211 122345678888 8876666654
Q ss_pred HHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEE-eCCEEEEEecCCCeEEEEeC
Q 023085 218 LAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++.+..+..........+..+.. +++.|..++ ..+.|.++++
T Consensus 273 ----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~i~~~d~ 326 (615)
T 1pgu_A 273 ----------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-LDGTLNFYEL 326 (615)
T ss_dssp ----------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE-TTSCEEEEET
T ss_pred ----------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE-CCCCEEEEEC
Confidence 2467777755 66777776543222233444444 455555554 4566776665
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-05 Score=68.75 Aligned_cols=148 Identities=7% Similarity=-0.059 Sum_probs=85.0
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccc--cCeEECCCCcEEEEe-----------------------CCC
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTL--VGLTSTKEGHLIICD-----------------------NAN 53 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~--~~i~~d~dg~l~v~~-----------------------~~~ 53 (287)
.+|| .|+++..+..|+.++ +++.......+.... .....+++|++.++. ...
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 4567 577777777899998 555544433322111 023347888876642 113
Q ss_pred ceEEEc-cCC-cEEEeeecCCccccccceEEEcC-CCcEE-EEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe
Q 023085 54 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 129 (287)
Q Consensus 54 gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~-~g~l~-v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 129 (287)
.|++++ .+| .+.+.... ..+..+.+.+ +|..+ ++.... .......|+.++.++++...+
T Consensus 169 ~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~dg~~l~~~~~~~------------~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 169 RLMRVDLKTGESTVILQEN-----QWLGHPIYRPYDDSTVAFCHEGP------------HDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp EEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSC------------TTTSSCSEEEEETTSCCCEES
T ss_pred eEEEEECCCCceEEeecCC-----ccccccEECCCCCCEEEEEEecC------------CCCCcceEEEEeCCCCceEEe
Confidence 588888 677 66654321 2356778888 88633 321110 001134799999876665555
Q ss_pred eccc--cccceEEEccCCCEE-EEEeCCCC---EEEEEEecCC
Q 023085 130 ADGF--YFANGVALSRDEDYV-VVCESWKF---RCRKYWLKGE 166 (287)
Q Consensus 130 ~~~~--~~~~~i~~~~~~~~l-~v~~~~~~---~l~~~~~~~~ 166 (287)
.... ......+|+|||+.| |++...+. .|+.++++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 4322 123456899999866 44543332 3889987654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.4e-05 Score=64.52 Aligned_cols=179 Identities=15% Similarity=0.081 Sum_probs=104.3
Q ss_pred CCCCc-EEEEe--cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCcc
Q 023085 2 DKNGV-IYTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~--~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~ 74 (287)
.+||. |.+++ .++.|..|+ +++............ ++++.|||++.++....++.+++ .++ ....... ...
T Consensus 142 SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~--~~~ 218 (365)
T 4h5i_A 142 SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTD--FDK 218 (365)
T ss_dssp CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEECC--CCT
T ss_pred cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeeec--CCC
Confidence 46775 55666 567788888 444433333344445 89999999987776566788888 666 3222111 111
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-----eeccccccceEEEccCCCEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~l~ 149 (287)
...+..+++.++|...++... .......++.++........ +.........++|+|+|+.|.
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~-------------d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la 285 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASL-------------KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV 285 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEE-------------SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEec-------------CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence 235678899999987765211 01112245555544333221 222233456788999999666
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+. ..+.|..||....+ ....+...=.+....+++.+||++.++...
T Consensus 286 sgs-~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~ 332 (365)
T 4h5i_A 286 LAS-NDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSA 332 (365)
T ss_dssp EEE-TTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred EEc-CCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence 665 45679999875421 112221111224577999999987666544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-05 Score=71.17 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=85.4
Q ss_pred eEECCCC--cEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 38 LTSTKEG--HLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 38 i~~d~dg--~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.++.+|| .++++....++..++ .+| .+.+.... . ..+++++||+.+++.+. .....
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~-~~~~~spDG~~la~~~~-------------~~~~~ 174 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP------G-FGFVSDIRGDLIAGLGF-------------FGGGR 174 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES------S-CEEEEEEETTEEEEEEE-------------EETTE
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC------C-ceEEECCCCCEEEEEEE-------------cCCCC
Confidence 3455555 355555455666777 667 55554321 1 67889999987663111 01112
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC-CEEEEEEecCCCCcceeEEeccCCCCCccee------
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNIN------ 186 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~------ 186 (287)
..|+.+|..+++.+.+.........++|+|||+.|+.++..+ ..|+++++++++ .. ........+.+++
T Consensus 175 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 175 VSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEE
T ss_pred eEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccc
Confidence 569999988888776655444557889999999888555432 278999876532 22 2212222234456
Q ss_pred --eCCCCCEEEEEec
Q 023085 187 --LAPDGTFWIAIIK 199 (287)
Q Consensus 187 --~d~~G~lwv~~~~ 199 (287)
+++||.++++...
T Consensus 251 ~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 251 LGYLPDGRLAVVARR 265 (582)
T ss_dssp EEECTTSCEEEEEEE
T ss_pred eeEcCCCcEEEEEEc
Confidence 8999988887765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00018 Score=60.97 Aligned_cols=178 Identities=13% Similarity=0.120 Sum_probs=98.5
Q ss_pred CCCCc-EEEEecCCeEEEEE-C-CceEEEEee--CCccccCeEECCC--CcEEEE-eCCCceEEEc-cCC-cEEEeeecC
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-D-GTWVNWKFI--DSQTLVGLTSTKE--GHLIIC-DNANGLHKVS-EDG-VENFLSYVN 71 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~-~~~~~~~~~--~~~~~~~i~~d~d--g~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~ 71 (287)
.++|. |..++.+|.|..|+ . +........ ...++..+++.++ +++.++ ...+.|..++ .++ ...+.....
T Consensus 20 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 99 (379)
T 3jrp_A 20 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV 99 (379)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC
Confidence 45674 55666888898888 3 333322221 1222327777765 765554 4434577777 566 334332211
Q ss_pred CccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe---eEEeeccccccceEEEcc---
Q 023085 72 GSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFANGVALSR--- 143 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~i~~~~--- 143 (287)
....+.++++.++ +.++++ +...+.|..+|..++. ...+.........++++|
T Consensus 100 --~~~~v~~~~~~~~~~~~~l~~-----------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 100 --HSASVNSVQWAPHEYGPLLLV-----------------ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp --CSSCEEEEEECCGGGCSEEEE-----------------EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred --CCcceEEEEeCCCCCCCEEEE-----------------ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 1246788899988 776664 2235677777766542 112223334456778888
Q ss_pred ----------CCCEEEEEeCCCCEEEEEEecCCCCc-ceeEEeccCCCCCcceeeCCC---CCEEEEEec
Q 023085 144 ----------DEDYVVVCESWKFRCRKYWLKGERKG-KLETFAENLPGAPDNINLAPD---GTFWIAIIK 199 (287)
Q Consensus 144 ----------~~~~l~v~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~---G~lwv~~~~ 199 (287)
+++.++.+. ..+.|..|++...... ........-......+++.++ +++.++...
T Consensus 161 ~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp ---------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 577555554 4678999998643211 111111112234567888888 665555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00019 Score=62.55 Aligned_cols=220 Identities=12% Similarity=0.086 Sum_probs=125.4
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
+++|. |..++.++.|..|+ +++...... ...... .+++.++|+..++ ...+.|..++ .++ ...+...
T Consensus 159 ~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h---- 233 (410)
T 1vyh_C 159 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH---- 233 (410)
T ss_dssp CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC----
T ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC----
Confidence 34564 55566788888888 333222111 122234 7889999976555 4334577777 666 4444221
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccC--------
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRD-------- 144 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~-------- 144 (287)
...+..+...++|.++++. ..++.|..+|..+++.... .........++++|+
T Consensus 234 -~~~v~~~~~~~~g~~l~s~-----------------s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 234 -REWVRMVRPNQDGTLIASC-----------------SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp -SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred -CccEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence 2356778888899877752 2345677777765554332 222233455667664
Q ss_pred ------------CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcch
Q 023085 145 ------------EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 145 ------------~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~ 212 (287)
+. +.++.+..+.|..||+.... ....+. .-.+....++++++|++.++...
T Consensus 296 ~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~------------- 358 (410)
T 1vyh_C 296 ATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCAD------------- 358 (410)
T ss_dssp CCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEET-------------
T ss_pred hccccccccCCCCC-EEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEeC-------------
Confidence 44 44444556789999975421 122222 12234567889999876665544
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 213 LIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++.+..+.... ..++++... ++.+.+++-....|.++++
T Consensus 359 ---------------------D~~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 359 ---------------------DKTLRVWDYKNKRCMKTLNAHE----HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ---------------------TTEEEEECCTTSCCCEEEECCS----SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ---------------------CCeEEEEECCCCceEEEEcCCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 2467777754 55566665433 246777775 4554455555567777664
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00037 Score=60.25 Aligned_cols=168 Identities=10% Similarity=0.054 Sum_probs=101.3
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC---cEEEeeecCCcc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG---VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g---~~~~~~~~~~~~ 74 (287)
++| .|.+++.+|.|..|+ +++..........+...+.. +++ ++.+...+.|..++ +.. ...+.. .
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-----H 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-----C
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-----C
Confidence 456 466777888999998 44433322222222225666 344 44445445577777 433 233221 1
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+.++++.+++.++++. ..++.|..+|..+++... +.........++++|++..++++..
T Consensus 217 ~~~v~~~~~~~~~~~l~s~-----------------~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASG-----------------GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279 (401)
T ss_dssp SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred CCCeeEEEEcCCCCEEEEE-----------------eCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec
Confidence 2367889999998877752 235678888887655433 3334455678999998877777754
Q ss_pred --CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 154 --WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 154 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
..+.|..|+....+ ....+. .......+++.++|+..+++.
T Consensus 280 gs~d~~i~i~d~~~~~--~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 280 GTMDKQIHFWNAATGA--RVNTVD--AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp CTTTCEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCCEEEEEECCCCC--EEEEEe--CCCcEEEEEECCCCCeEEEEe
Confidence 56789999975432 122221 223467788899998777654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00014 Score=61.28 Aligned_cols=173 Identities=9% Similarity=0.059 Sum_probs=96.9
Q ss_pred CcEEEEecCCeEEEEE--CCc--eEEEEeeCCccccCe------EECCCCcEEEE-eCCCceEEEc-cCC---cEEEeee
Q 023085 5 GVIYTATRDGWIKRLQ--DGT--WVNWKFIDSQTLVGL------TSTKEGHLIIC-DNANGLHKVS-EDG---VENFLSY 69 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~--~~~~~~~~~~~~~~i------~~d~dg~l~v~-~~~~gi~~~~-~~g---~~~~~~~ 69 (287)
..|..++.+|.|..|+ +++ ...+........ .+ ++.++++++++ ...+.|..++ .++ ...+..
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~- 158 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP- 158 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-
Confidence 3577788899999998 333 223322222222 44 45678865554 4334577777 444 333322
Q ss_pred cCCccccccceEE----EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc--
Q 023085 70 VNGSKLRFANDVV----EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-- 143 (287)
Q Consensus 70 ~~~~~~~~~~~l~----~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 143 (287)
..+.....+..++ +.+++.++++ +...+.|..+|..+++.............++++|
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~-----------------~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 159 VQGENKRDCWTVAFGNAYNQEERVVCA-----------------GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp CTTSCCCCEEEEEEECCCC-CCCEEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred cCCCCCCceEEEEEEeccCCCCCEEEE-----------------EccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 1221123455565 5567776664 2235688899988777654444445567889999
Q ss_pred -CCCEEEEEeCCCCEEEEEEecCCCC-cceeEE-eccCCCCCcceeeCCCCC-EEEEE
Q 023085 144 -DEDYVVVCESWKFRCRKYWLKGERK-GKLETF-AENLPGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 144 -~~~~l~v~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~d~~G~-lwv~~ 197 (287)
+++.++++. ..+.|..|++..... ...... ..........+++.++|. +.++.
T Consensus 222 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 222 ISMNKLVATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp SSCCEEEEEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence 888776665 467899999764321 111111 001223456688888887 44443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00034 Score=60.34 Aligned_cols=56 Identities=20% Similarity=0.067 Sum_probs=39.0
Q ss_pred EEEccCCCEEEEEeCC---------CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEe
Q 023085 139 VALSRDEDYVVVCESW---------KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 198 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~ 198 (287)
++++++++.+|++... ++.|+.+|.+..+. ...+ ...+.|.++++++||+ +++++.
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i--~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQI--SLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEE--ECCCCcCeEEECCCCCeEEEEEc
Confidence 7889999999998642 35799999754321 1222 2334699999999998 666655
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00011 Score=61.51 Aligned_cols=133 Identities=9% Similarity=0.139 Sum_probs=78.2
Q ss_pred CCcEEEEe--cCCeEEEEE-CCce-EEEEeeCCccccCeEECCCCcEEEEeCC--------------CceEEEccCC--c
Q 023085 4 NGVIYTAT--RDGWIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA--------------NGLHKVSEDG--V 63 (287)
Q Consensus 4 ~G~l~~~~--~~g~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~l~v~~~~--------------~gi~~~~~~g--~ 63 (287)
++.||+.. .++.|++++ +|.. +.+... .+. .|..+ .+.||.+... ..|++++.+| .
T Consensus 25 g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~-~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~ 100 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAM-YINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS 100 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEE-EEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCC
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCCEEccCC--cee-eEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc
Confidence 46788886 468899999 5543 333322 122 33333 3356666432 3588888555 5
Q ss_pred EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 143 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~ 143 (287)
+.+... ....++++ .+.||+++.. ......|++++.+....+.+..... ..+++
T Consensus 101 ~~l~~~-------~~~~~s~~-g~~Iy~~~~~--------------~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~ 154 (302)
T 3s25_A 101 TVLDPD-------PCIYASLI-GNYIYYLHYD--------------TQTATSLYRIRIDGEEKKKIKNHYL----FTCNT 154 (302)
T ss_dssp EEEECS-------CEEEEEEE-TTEEEEEEES--------------SSSCEEEEEEETTSCCCEEEESSCC----CCSEE
T ss_pred eEeecC-------CccEEEEe-CCEEEEEeec--------------CCCCceEEEEECCCCCeEEEeCCCc----eEeeE
Confidence 554321 11133332 3568876410 1234679999987555555543322 34578
Q ss_pred CCCEEEEEeCCCCEEEEEEecCC
Q 023085 144 DEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
+++.||+++.....|++.++++.
T Consensus 155 ~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 155 SDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp ETTEEEEECTTTCCEEEEETTTT
T ss_pred ECCEEEEEeCCCceEEEEECCCC
Confidence 89999999887788999997653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00068 Score=58.51 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=98.7
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeC------------------CccccCeEECCCCcEEEE-eCCCceEEEc-
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFID------------------SQTLVGLTSTKEGHLIIC-DNANGLHKVS- 59 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~------------------~~~~~~i~~d~dg~l~v~-~~~~gi~~~~- 59 (287)
.++|.+.+...++.+..|+ +++........ ...+..+++.++|++.++ ...+.|..++
T Consensus 73 spdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~ 152 (393)
T 1erj_A 73 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152 (393)
T ss_dssp CTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 4677655444456677777 45443221110 001226788999976655 4334577777
Q ss_pred cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccce
Q 023085 60 EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 138 (287)
Q Consensus 60 ~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 138 (287)
.++ ....... ....+.++++.+++...++. ..++.|..+|..+++.............
T Consensus 153 ~~~~~~~~~~~----h~~~v~~~~~~p~~~~l~s~-----------------s~d~~v~iwd~~~~~~~~~~~~~~~v~~ 211 (393)
T 1erj_A 153 ENRKIVMILQG----HEQDIYSLDYFPSGDKLVSG-----------------SGDRTVRIWDLRTGQCSLTLSIEDGVTT 211 (393)
T ss_dssp TTTEEEEEECC----CSSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CCCcEEEEEcc----CCCCEEEEEEcCCCCEEEEe-----------------cCCCcEEEEECCCCeeEEEEEcCCCcEE
Confidence 566 3222111 12357889999999877752 2356788888887765443333334566
Q ss_pred EEEcc-CCCEEEEEeCCCCEEEEEEecCCCCcceeEEec------cCCCCCcceeeCCCCCEEEEEe
Q 023085 139 VALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAE------NLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 139 i~~~~-~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++++| +++.+..+ ...+.|..||...... ...+.. .-......+++.++|++.++..
T Consensus 212 ~~~~~~~~~~l~~~-s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 212 VAVSPGDGKYIAAG-SLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp EEECSTTCCEEEEE-ETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEE-cCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 78888 77755554 4567788898754321 111110 0112345688888887665554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00069 Score=57.21 Aligned_cols=138 Identities=18% Similarity=0.044 Sum_probs=84.0
Q ss_pred CeEECC--CCcEEEE-eCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTK--EGHLIIC-DNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~--dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.+++.+ +++++++ ...+.|..++ +++ ....... .....+..+++.++|.++++ +.
T Consensus 130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~las-----------------g~ 189 (343)
T 3lrv_A 130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLAL-----------------YS 189 (343)
T ss_dssp EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEE-----------------EC
T ss_pred EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEE-----------------Ec
Confidence 788889 8987664 4445577788 666 4222211 11234788999999998775 23
Q ss_pred CCceEEEEeCCCCeeE--Eeec-cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCC-cceeEEeccCCCCC---cc
Q 023085 112 PHGQLLKYDPSSNITT--LVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAP---DN 184 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~--~~~~-~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~---~~ 184 (287)
.++.|..+|..+++.. .+.. .......++|+|++..|..+. . +.|..||+...+. .....+. ....+ ..
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~ 265 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTYT--IPEFKTGTVT 265 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCCB--C-----CCEE
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeecccc--cccccccceE
Confidence 4567888888766543 3333 345567889999999777776 3 3899999864321 1111110 00112 24
Q ss_pred eeeCCCCCEEEEEe
Q 023085 185 INLAPDGTFWIAII 198 (287)
Q Consensus 185 i~~d~~G~lwv~~~ 198 (287)
++++++|++.++..
T Consensus 266 ~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 266 YDIDDSGKNMIAYS 279 (343)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEECCCCCEEEEec
Confidence 89999998666643
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00047 Score=58.71 Aligned_cols=171 Identities=9% Similarity=0.042 Sum_probs=97.9
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC--------cEEEe
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--------VENFL 67 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g--------~~~~~ 67 (287)
.++| .|..++.+|.|..|+ +++...... ...... .+++.|+|.+.++....+ +..++ ... ...+.
T Consensus 73 s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~ 151 (354)
T 2pbi_B 73 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM-ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA 151 (354)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC-EEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEE-EEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeee
Confidence 3566 466666899999998 444433322 223334 788999998777654443 44443 211 11111
Q ss_pred eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEcc--C
Q 023085 68 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSR--D 144 (287)
Q Consensus 68 ~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~--~ 144 (287)
.....+..+++.+++...++ +..++.|..+|..+++... +.........+.+.| +
T Consensus 152 -----~h~~~v~~~~~~~~~~~l~t-----------------~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 152 -----MHTNYLSACSFTNSDMQILT-----------------ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp -----ECSSCEEEEEECSSSSEEEE-----------------EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred -----ccCCcEEEEEEeCCCCEEEE-----------------EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 11235677888888876664 2345678888887776433 332333345566765 4
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 145 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++.++.+. ..+.|..||+...+ ....+. .-......+++.++|++.++...
T Consensus 210 g~~l~sgs-~Dg~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 210 GNTFVSGG-CDKKAMVWDMRSGQ--CVQAFE-THESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp CCEEEEEE-TTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEe-CCCeEEEEECCCCc--EEEEec-CCCCCeEEEEEeCCCCEEEEEeC
Confidence 56555554 56789999975432 122221 12234567888898876666544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00066 Score=56.82 Aligned_cols=170 Identities=10% Similarity=0.101 Sum_probs=98.2
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCcc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~ 74 (287)
.++|. |..++.++.|..|+ +++... +........ .+.+.+++++.++... +.|..++ ... ...+...
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h----- 147 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH----- 147 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCC-----
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEecc-----
Confidence 35664 55666889999999 554433 222233334 7889999976665434 4466666 433 4443211
Q ss_pred ccccceEEEcCC------CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCE
Q 023085 75 LRFANDVVEASD------GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDY 147 (287)
Q Consensus 75 ~~~~~~l~~d~~------g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ 147 (287)
...+..+.+.+. +.++++ +..++.|..+|..+.+... +.........++++|+++.
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIIS-----------------AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210 (319)
T ss_dssp SSCEEEEEECCC------CCEEEE-----------------EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE
T ss_pred CCcEEEEEEccCCCCCCCccEEEE-----------------EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE
Confidence 123455555543 334443 2235667788877665433 2233445678899999986
Q ss_pred EEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
|..+. ..+.|..||+...+ ....+. .......+++.++|.+.++...
T Consensus 211 l~s~~-~dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 211 IASAG-KDGEIMLWNLAAKK--AMYTLS--AQDEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp EEEEE-TTCEEEEEETTTTE--EEEEEE--CCSCEEEEEECSSSSEEEEEET
T ss_pred EEEEe-CCCeEEEEECCCCc--EEEEec--CCCcEEEEEEcCCCCEEEEEcC
Confidence 55554 56789999975431 111221 2234567889999876665544
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00011 Score=62.90 Aligned_cols=222 Identities=12% Similarity=0.114 Sum_probs=121.9
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceE---EEEee-CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecC
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWV---NWKFI-DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~---~~~~~-~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~ 71 (287)
.+++.+.+++.+|.|..|+ +++.. .+... ...++..+++.++|++.++ ...+.|..++ .++ ...+..
T Consensus 103 s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~--- 179 (357)
T 4g56_B 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA--- 179 (357)
T ss_dssp ETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC---
T ss_pred cCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---
Confidence 3567788888888888887 33221 11111 1122337899999976655 4344577777 666 333321
Q ss_pred CccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee---ccccccceEEEccCCCE
Q 023085 72 GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDY 147 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~ 147 (287)
....++++++.+++. ++++. ..++.|..+|..+++..... .....+..++++|++..
T Consensus 180 --h~~~v~~v~~s~~~~~~~~s~-----------------~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 180 --HSSEVNCVAACPGKDTIFLSC-----------------GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp --CSSCEEEEEECTTCSSCEEEE-----------------ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred --CCCCEEEEEEccCCCceeeee-----------------ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 123577888887763 55531 23466887887665533221 11234567889998665
Q ss_pred EEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
++++....+.|..||+...+ ....+. ........+++.++|.-++++...
T Consensus 241 ~la~g~~d~~i~~wd~~~~~--~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~--------------------------- 290 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNPD--SAQTSA-VHSQNITGLAYSYHSSPFLASISE--------------------------- 290 (357)
T ss_dssp EEEEEESSSCEEEEESSCGG--GCEEEC-CCSSCEEEEEECSSSSCCEEEEET---------------------------
T ss_pred eEEEeecccceeEEECCCCc--EeEEEe-ccceeEEEEEEcCCCCCEEEEEeC---------------------------
Confidence 66555556789999975432 122222 122235678888887544433321
Q ss_pred cccCCCceEEEEECCCC-cEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 228 FITLGGGAHLIHVAEDG-TIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..+|.+. +.+..+.. ...+.++... ++.++++.-.-+.|.+.++
T Consensus 291 ------D~~i~iwd~~~~~~~~~~~H-----~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 291 ------DCTVAVLDADFSEVFRDLSH-----RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp ------TSCEEEECTTSCEEEEECCC-----SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ------CCEEEEEECCCCcEeEECCC-----CCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 24566777664 33433321 2346777764 4555554444556766665
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00077 Score=62.79 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=100.9
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCcEEEE-eCCCceEEEccCC--cEEEeeecCCcc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
.++|. |..++.++.|..|+ ++.... +........ .+++.++++..++ ...+.|..++..+ ...+.... ...
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~h 516 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG-EGH 516 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSST-TSC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC-CCC
Confidence 35664 55666889999999 444332 222233334 8889999975554 4334566666333 33332111 112
Q ss_pred ccccceEEEcCCC--cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEE
Q 023085 75 LRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 75 ~~~~~~l~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
...+.++++.+++ .+.++ +..++.|..+|..+++.... .........++++|+++.|..+
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s-----------------~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVS-----------------ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEE-----------------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEeCCCCcceEEE-----------------EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 2357788888876 34553 22356788888776654433 3334456788999999855554
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+..+.|..||+...+ . ............+++.+++.+.++...
T Consensus 580 -~~Dg~i~iwd~~~~~---~-~~~~~~~~~v~~~~~sp~~~~l~~~~~ 622 (694)
T 3dm0_A 580 -GKDGVVLLWDLAEGK---K-LYSLEANSVIHALCFSPNRYWLCAATE 622 (694)
T ss_dssp -ETTSBCEEEETTTTE---E-EECCBCSSCEEEEEECSSSSEEEEEET
T ss_pred -eCCCeEEEEECCCCc---e-EEEecCCCcEEEEEEcCCCcEEEEEcC
Confidence 456788899875421 1 111112234567888888876666554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00031 Score=60.16 Aligned_cols=228 Identities=12% Similarity=0.018 Sum_probs=123.5
Q ss_pred CcEEEEecCCeEEEEE--CCc-------eEEEEeeCCccccCeEECCC----C---cEEEE-eCCCceEEEc-cCC-c--
Q 023085 5 GVIYTATRDGWIKRLQ--DGT-------WVNWKFIDSQTLVGLTSTKE----G---HLIIC-DNANGLHKVS-EDG-V-- 63 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~-------~~~~~~~~~~~~~~i~~d~d----g---~l~v~-~~~~gi~~~~-~~g-~-- 63 (287)
..|..++.+|.|..|+ .++ ...+........ .+++.++ | +++++ ...+.|..++ .++ .
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~ 105 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 105 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE-EEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEE-EEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc
Confidence 4567777899999999 444 333332223334 7888888 8 65554 4344577776 444 2
Q ss_pred ---EEEeeecCCc-cccccceEEEc----CCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC------Ce-eE
Q 023085 64 ---ENFLSYVNGS-KLRFANDVVEA----SDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS------NI-TT 127 (287)
Q Consensus 64 ---~~~~~~~~~~-~~~~~~~l~~d----~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~-~~ 127 (287)
.......... ....+.++++. +++.. +++. ...+.|..+|..+ ++ +.
T Consensus 106 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-----------------~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 106 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-----------------DVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-----------------ETTSCEEEEEEESSSSHHHHTTTC
T ss_pred cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-----------------eCCCcEEEEeCCccccccccceee
Confidence 2211111000 02467889999 88876 6642 2234565555443 22 21
Q ss_pred -----Eee-------ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc---C---CCCCcceeeCC
Q 023085 128 -----LVA-------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN---L---PGAPDNINLAP 189 (287)
Q Consensus 128 -----~~~-------~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~i~~d~ 189 (287)
.+. ........++++|++ .+++ ....+.|..|++...+ ....+. . . ...+..+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~--~~~~~~-~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELSTLR--PLYNFE-SQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTTTE--EEEEEE-CCC---CCCCCEEEEEECS
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCCCc--eeEEEe-ccccccccCCccceEEECC
Confidence 221 123345778899988 4444 4556789999975421 112222 1 1 33467788999
Q ss_pred CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCC---------cccc
Q 023085 190 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTG---------QLMS 259 (287)
Q Consensus 190 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~---------~~~~ 259 (287)
++++.++.... ...+.|..++. .++.+..+..+.. ....
T Consensus 244 ~~~~l~~~~~d-------------------------------~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 244 QGSLLAIAHDS-------------------------------NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp STTEEEEEEEE-------------------------------TTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred CCCEEEEEecC-------------------------------CCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence 99876666540 00147777775 4666666653100 0123
Q ss_pred ceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 260 FVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 260 ~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+..+... ++++.++....+.|.++++
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 46666665 4555555556677887776
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9.1e-05 Score=68.50 Aligned_cols=216 Identities=10% Similarity=-0.019 Sum_probs=117.5
Q ss_pred CCC-c-EEEEe-cCCeEEEEE-C----CceEEEEee-----CCccccCeEECCCCc-EEEEeCC----------CceEEE
Q 023085 3 KNG-V-IYTAT-RDGWIKRLQ-D----GTWVNWKFI-----DSQTLVGLTSTKEGH-LIICDNA----------NGLHKV 58 (287)
Q Consensus 3 ~~G-~-l~~~~-~~g~i~~~~-~----~~~~~~~~~-----~~~~~~~i~~d~dg~-l~v~~~~----------~gi~~~ 58 (287)
+|| . |.++. ....|+.++ + +....+... ..... .+++++||+ |+++... ..|+++
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 556 4 56655 357788888 6 554444332 11233 778899996 5444322 258888
Q ss_pred c-cC------C-cEEEe-eecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CC---
Q 023085 59 S-ED------G-VENFL-SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SN--- 124 (287)
Q Consensus 59 ~-~~------g-~~~~~-~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~--- 124 (287)
+ .+ + .+.+. .. ...+..+++++||. |.++.... ..+.| ....|+.++.+ ++
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDG~~la~~~~~~--~~~~~--------~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDDA-----HRFVTGPRLSPDGRQAVWLAWDH--PRMPW--------EGTELKTARVTEDGRFA 231 (662)
T ss_dssp ETTSTTTTCGGGSEESSCSC-----SSEECCCEECTTSSEEEEEEECT--TCCTT--------TCEEEEEEEECTTSCEE
T ss_pred ECCCCccccCCceeEEEecC-----CCcccCceECCCCCEEEEEECCC--CCCCC--------CCcEEEEEEECCCCccc
Confidence 8 66 6 55443 11 12456678999996 43332110 00000 12468888877 46
Q ss_pred eeEEeecc-ccccceEEEccCCCEEEEEeCCCC--EEEEEEecCCCCcceeEEeccCCC--------CCcceeeCCCCCE
Q 023085 125 ITTLVADG-FYFANGVALSRDEDYVVVCESWKF--RCRKYWLKGERKGKLETFAENLPG--------APDNINLAPDGTF 193 (287)
Q Consensus 125 ~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~d~~G~l 193 (287)
+...+... ......++|+|||+ ++++....+ .|++++.++++ .......... ....+++.++|++
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred ccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEE
Confidence 44444432 34556788999999 555554444 78888864332 1111111000 0245677778887
Q ss_pred EEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEE-EEeCCEEE
Q 023085 194 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSG-LQVDNHLY 272 (287)
Q Consensus 194 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~l~ 272 (287)
+++.... ...|+.++.++..+..+....+ .+..+ ..+++.++
T Consensus 308 ~~~~~~~---------------------------------~~~l~~~d~~~~~~~~l~~~~~----~~~~~~s~~~~~~~ 350 (662)
T 3azo_A 308 AVVHGKG---------------------------------AAVLGILDPESGELVDAAGPWT----EWAATLTVSGTRAV 350 (662)
T ss_dssp EEEEBSS---------------------------------SCEEEEEETTTTEEEECCSSCC----EEEEEEEEETTEEE
T ss_pred EEEEEcC---------------------------------ccEEEEEECCCCcEEEecCCCC----eEEEEEecCCCEEE
Confidence 7665421 3478888877666666654332 23334 44555555
Q ss_pred EEe
Q 023085 273 VIS 275 (287)
Q Consensus 273 i~~ 275 (287)
+..
T Consensus 351 ~~~ 353 (662)
T 3azo_A 351 GVA 353 (662)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00023 Score=64.69 Aligned_cols=232 Identities=12% Similarity=0.018 Sum_probs=124.8
Q ss_pred CCCCcEEEEecCCeEEEEE--CC----ceE-EEEeeCCc-cccCeEECC--CCcEEEE-eCCCceEEEc-cCC------c
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DG----TWV-NWKFIDSQ-TLVGLTSTK--EGHLIIC-DNANGLHKVS-EDG------V 63 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~----~~~-~~~~~~~~-~~~~i~~d~--dg~l~v~-~~~~gi~~~~-~~g------~ 63 (287)
+++|.+.+...++.|..|+ ++ +.. .+...... .. .+++.+ ++++.++ ...+.|..++ .++ .
T Consensus 27 spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 105 (615)
T 1pgu_A 27 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE 105 (615)
T ss_dssp ETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE
T ss_pred CCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc
Confidence 4677544333477888888 44 333 23222333 44 889999 9976555 4333455555 322 0
Q ss_pred EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 143 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~ 143 (287)
........ .....+.++++.++|...++... .....+.|+.++.. ..+..+.........++++|
T Consensus 106 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-------------~~~~~~~v~~~d~~-~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 106 VNVKSEFQ-VLAGPISDISWDFEGRRLCVVGE-------------GRDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEEEEE-CCSSCEEEEEECTTSSEEEEEEC-------------CSSCSEEEEETTTC-CEEEECCSCSSCEEEEEECS
T ss_pred ccccchhh-cccccEEEEEEeCCCCEEEEecc-------------CCCCccEEEEEECC-CcceeeecCCccEEEEEECC
Confidence 11111111 11245788999999987664211 00112567777743 34444444445567889999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCC---CCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHH
Q 023085 144 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG---APDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLA 219 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~ 219 (287)
+++.++++....+.|..|+....+ ....+. .... ....+++.++ |++.++...
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------------- 227 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVGS-------------------- 227 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEET--------------------
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEeC--------------------
Confidence 998555555567889999864321 111221 1122 3567888998 876665543
Q ss_pred hCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 220 AYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++. .++.+..+..+.......+..+...++++.++....+.|.++++
T Consensus 228 --------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 228 --------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281 (615)
T ss_dssp --------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred --------------CCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEEC
Confidence 246677774 46666666210000112355555534444444444566776665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0001 Score=61.84 Aligned_cols=171 Identities=9% Similarity=0.006 Sum_probs=96.3
Q ss_pred CCC-cEEEEecCCeEEEEE--CCc----eEEEEeeCCccccCeEECCCCc--EEEEeCCCceEEEcc-CC--cEEEeeec
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGT----WVNWKFIDSQTLVGLTSTKEGH--LIICDNANGLHKVSE-DG--VENFLSYV 70 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~----~~~~~~~~~~~~~~i~~d~dg~--l~v~~~~~gi~~~~~-~g--~~~~~~~~ 70 (287)
++| .|.+++.++.|..|+ .+. ............ .+++.++++ |+.+...+.|..++. .. ...+..
T Consensus 21 ~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-- 97 (342)
T 1yfq_A 21 PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-- 97 (342)
T ss_dssp GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS--
T ss_pred CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccc--
Confidence 455 466777889898888 444 333333333344 788898898 444454455777775 54 322211
Q ss_pred CCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC---------CeeEEeeccccccceEEE
Q 023085 71 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS---------NITTLVADGFYFANGVAL 141 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~i~~ 141 (287)
......+.++++.+ +.++++. ...+.|..+|..+ ++..........+..+++
T Consensus 98 -~~~~~~v~~l~~~~-~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 98 -NEANLGICRICKYG-DDKLIAA-----------------SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp -CCCCSCEEEEEEET-TTEEEEE-----------------ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred -cCCCCceEEEEeCC-CCEEEEE-----------------cCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 00224567888888 7766642 2346677777543 221111112234567778
Q ss_pred ccCCCEEEEEeCCCCEEEEEEecC-CCCcceeEEeccCCCCCcceeeCC-CCCEEEEEec
Q 023085 142 SRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIK 199 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~ 199 (287)
++++ ++++. ..+.|..|++.. .... ...........+..+++.+ ++++.++...
T Consensus 159 ~~~~--l~~~~-~d~~i~i~d~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 159 NSSR--LIVGM-NNSQVQWFRLPLCEDDN-GTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp CSSE--EEEEE-STTEEEEEESSCCTTCC-CEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred cCCc--EEEEe-CCCeEEEEECCcccccc-ceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 8766 55554 467899999865 3211 1111112233467788888 8876665544
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.2e-05 Score=61.96 Aligned_cols=193 Identities=15% Similarity=0.106 Sum_probs=116.0
Q ss_pred CeEEEEE-CCce-EEEEeeCCccccCeEECCCC-cEEEEe---C-CCceEEEccCC--cEEEeeecCCccccccceEEEc
Q 023085 14 GWIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEG-HLIICD---N-ANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEA 84 (287)
Q Consensus 14 g~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg-~l~v~~---~-~~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d 84 (287)
..|++++ +|.. +.+.... +..+.++| .||.++ . ...|++++.+| .+.+..... .+++
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~---------~~~~ 153 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL---------FTCN 153 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC---------CCSE
T ss_pred CeEEEEeCCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc---------eEee
Confidence 4688888 4432 2332221 22344444 688776 2 24688888666 666643311 1123
Q ss_pred CC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC-CEEEEEE
Q 023085 85 SD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-FRCRKYW 162 (287)
Q Consensus 85 ~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~-~~l~~~~ 162 (287)
.+ +.||+++. ....|++++.+++..+.+... +....+.|+++.||+++... .+|.+.+
T Consensus 154 ~~g~~iy~t~~-----------------g~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ 213 (302)
T 3s25_A 154 TSDRYFYYNNP-----------------KNGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVN 213 (302)
T ss_dssp EETTEEEEECT-----------------TTCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEEC
T ss_pred EECCEEEEEeC-----------------CCceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEE
Confidence 33 46887642 245799998876665555332 22234568999999998643 5899998
Q ss_pred ecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC
Q 023085 163 LKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA 241 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (287)
+++.. ...+... .. ..++++| .||.+.... ...|.+++
T Consensus 214 ldG~~---~~~Lt~~--~~---~~~~~~g~~Iy~~~~~~---------------------------------~~~i~~~~ 252 (302)
T 3s25_A 214 INNPN---PVVLTEA--NI---EHYNVYGSLIFYQRGGD---------------------------------NPALCVVK 252 (302)
T ss_dssp SSSCC---CEECSCS--CE---EEEEEETTEEEEEECSS---------------------------------SCEEEEEE
T ss_pred CCCCC---eEEEeCC--Cc---ceEEECCCEEEEEECCC---------------------------------CcEEEEEE
Confidence 87632 2222211 11 2355555 566665431 25889999
Q ss_pred CCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeCC
Q 023085 242 EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+|...+.+...+ ...+...++.||++......|.++.++
T Consensus 253 ~DG~~r~~l~~~~------~~~i~i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 253 NDGTGFKELAKGE------FCNINVTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp TTSCCCEEEEESC------EEEEEECSSEEEEEETTTCCEEEEESS
T ss_pred CCCCccEEeeCCc------cceEEEeCCEEEEEECCCCeEEEEECC
Confidence 9987666665321 346777799999999988889988764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00046 Score=58.49 Aligned_cols=176 Identities=10% Similarity=0.085 Sum_probs=97.7
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEE---eeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeecCC
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~---~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
.++|. |..++.++.|..|+ .+...... .....++..+++.++|++.++ .....+..++ ..+ .+.+.... +
T Consensus 25 sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~ 103 (345)
T 3fm0_A 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-G 103 (345)
T ss_dssp CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-C
T ss_pred CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-C
Confidence 45664 55566888888888 44332211 111222337899999976555 3334455555 444 33332211 1
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-e---EEeeccccccceEEEccCCCEE
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-T---TLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~l 148 (287)
....+.++++.++|.++++. ..++.|..++..++. . ..+.........++++|+++.|
T Consensus 104 -h~~~v~~v~~sp~~~~l~s~-----------------s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 104 -HENEVKSVAWAPSGNLLATC-----------------SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp -CSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred -CCCCceEEEEeCCCCEEEEE-----------------ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 12467889999999887752 224556656554332 1 1222233445678899999866
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
..+. ..+.|..|+...........+. .-......++++++|++.++..
T Consensus 166 ~s~s-~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 166 ASAS-YDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp EEEE-TTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEe-CCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEe
Confidence 6555 4567888887543211111121 1123456788899887655554
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00075 Score=57.01 Aligned_cols=172 Identities=9% Similarity=0.028 Sum_probs=95.0
Q ss_pred CCCc-EEEEecCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCcEEEE-eCCCceEEEccCC--cEEEeeecCCccc
Q 023085 3 KNGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVSEDG--VENFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G~-l~~~~~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~~~g--~~~~~~~~~~~~~ 75 (287)
+++. |..++.++.|..|+ +++... +........ .+++.++|+..++ ...+.|..++..+ ..... . .....
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~-~~~~~ 162 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA-E-KENHS 162 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEECC-T-TTSCS
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeeee-c-ccCCC
Confidence 4554 45566888898898 454332 322233334 8899999975554 4334566666323 22211 1 11112
Q ss_pred cccceEEEcCCC----------cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCC
Q 023085 76 RFANDVVEASDG----------SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 145 (287)
Q Consensus 76 ~~~~~l~~d~~g----------~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 145 (287)
..+..+++.+++ .++++ +..++.|..+|........+.........++++|++
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFAS-----------------VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEE-----------------EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTS
T ss_pred ceeeeeeeccccccccccCCCCCEEEE-----------------EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCC
Confidence 345667777655 34443 223567777875432233333334456788999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
+.|..+. ..+.|..||+...... ...+. .......+++.+++.+..+..
T Consensus 226 ~~l~sgs-~dg~v~iwd~~~~~~~-~~~~~--~~~~v~~v~~sp~~~~la~~~ 274 (343)
T 2xzm_R 226 KYIATGG-KDKKLLIWDILNLTYP-QREFD--AGSTINQIAFNPKLQWVAVGT 274 (343)
T ss_dssp SEEEEEE-TTCEEEEEESSCCSSC-SEEEE--CSSCEEEEEECSSSCEEEEEE
T ss_pred CEEEEEc-CCCeEEEEECCCCccc-ceeec--CCCcEEEEEECCCCCEEEEEC
Confidence 9665554 5678999997322111 11121 122356788889887654443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00081 Score=55.74 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=87.1
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.++|. |..++.++.|..|+ +++...... ...... .+.+.++++++++ ...+.|..++ +++ ...+...
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---- 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH---- 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC----
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC----
Confidence 35664 55666888899998 444333222 222334 7888999976655 4344577788 666 3333211
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-ee-ccccccceEEEccCCCEEEEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VA-DGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-~~~~~~~~i~~~~~~~~l~v~ 151 (287)
...+..+++.+++.++++. ...+.|..+|..+++... +. ........++++|+++.++.+
T Consensus 149 -~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 149 -SDPVSAVHFNRDGSLIVSS-----------------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp -SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred -CCcEEEEEEcCCCCEEEEE-----------------eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 2346788899999877752 235678888887665432 22 222234567899999976666
Q ss_pred eCCCCEEEEEEecC
Q 023085 152 ESWKFRCRKYWLKG 165 (287)
Q Consensus 152 ~~~~~~l~~~~~~~ 165 (287)
. ..+.|..||+..
T Consensus 211 ~-~d~~i~iwd~~~ 223 (312)
T 4ery_A 211 T-LDNTLKLWDYSK 223 (312)
T ss_dssp E-TTTEEEEEETTT
T ss_pred c-CCCeEEEEECCC
Confidence 5 467899999754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00087 Score=56.07 Aligned_cols=168 Identities=13% Similarity=0.116 Sum_probs=95.5
Q ss_pred cEEEEecCCeEEEEE-C--C-ceE----EEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCc
Q 023085 6 VIYTATRDGWIKRLQ-D--G-TWV----NWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~--~-~~~----~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.|..++.++.|..|+ . . ... .+........ .+++.++|++.++... +.|..++ .++ ...+...
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h---- 106 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH---- 106 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC----
T ss_pred EEEEecCCccEEEecCCCCCccccccceEEeCCcccEE-EEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC----
Confidence 456667888888887 2 1 111 1111222233 7888999986665433 4577777 666 3333221
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCC-----EE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED-----YV 148 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~l 148 (287)
...+.++++.+++.++++. ..++.|..+|.+...+..+.........+.+.|... .+
T Consensus 107 -~~~v~~~~~~~~~~~l~s~-----------------s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 107 -KSDVMSVDIDKKASMIISG-----------------SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp -SSCEEEEEECTTSCEEEEE-----------------ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred -CCcEEEEEEcCCCCEEEEE-----------------eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 2357889999999887752 234567777776444444443334445666666322 14
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+++....+.|..|++...+ ....+. .-......+++.++|++.++...
T Consensus 169 l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp EEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEET
T ss_pred EEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence 4444456778888875321 111221 11223567888999987666554
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00027 Score=59.89 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=85.8
Q ss_pred CeEECCCCcEEEEe-CCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~-~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.+++.++|++.++. ..+.|..++ .++ ...+..... ....+.++++.+++.++++. ..+
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~-----------------~~d 73 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTC-----------------GTD 73 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEE-----------------ETT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC--CCCcccEEEEeCCCCEEEEE-----------------cCC
Confidence 88999999866554 344577777 555 333322211 12467889999999877752 234
Q ss_pred ceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcc-eeEEeccCCCCCcceeeCC
Q 023085 114 GQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAP 189 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~d~ 189 (287)
+.|..++..+++.... .........++++|+++.++++.. .+.|..|++....... ...+.......+..+++.+
T Consensus 74 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 5666666665653322 223345677889999987777664 5678888876532111 1222111223466788888
Q ss_pred CCCEEEEEec
Q 023085 190 DGTFWIAIIK 199 (287)
Q Consensus 190 ~G~lwv~~~~ 199 (287)
++++.++...
T Consensus 153 ~~~~l~~~~~ 162 (372)
T 1k8k_C 153 NSVLLAAGSC 162 (372)
T ss_dssp TSSEEEEEET
T ss_pred CCCEEEEEcC
Confidence 8876665543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00036 Score=64.05 Aligned_cols=179 Identities=11% Similarity=0.022 Sum_probs=98.8
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC-cEEEeeecCCcc
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLSYVNGSK 74 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g-~~~~~~~~~~~~ 74 (287)
++++|...+...++.|..++ +++... +........ .+++.|||++.++....+ |...+ .++ ........ + .
T Consensus 26 ~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~-~ 102 (611)
T 1nr0_A 26 NTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-V-F 102 (611)
T ss_dssp ECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-C-S
T ss_pred eCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-c-c
Confidence 35778544333456777787 344333 322233334 889999998766643444 55666 444 21111111 1 1
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
...+.+++++++|...++.... ....+.|+.++.. .....+.........++|+|++..++++.+.
T Consensus 103 ~~~v~~v~fs~dg~~l~~~~~~-------------~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~ 168 (611)
T 1nr0_A 103 SGPVKDISWDSESKRIAAVGEG-------------RERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEECC-------------SSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEECC-------------CCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeEEEEEeC
Confidence 2367889999999876642110 0112467777643 2222233333456788999998755566566
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+..|+.... .....+. .-......+++.++|++.++...
T Consensus 169 D~~v~lwd~~~~--~~~~~l~-~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 169 DNTVAIFEGPPF--KFKSTFG-EHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp TSCEEEEETTTB--EEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCeEEEEECCCC--eEeeeec-cccCceEEEEECCCCCEEEEEEC
Confidence 778888885321 1111221 11224567889999987766654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00024 Score=60.78 Aligned_cols=231 Identities=12% Similarity=0.022 Sum_probs=125.1
Q ss_pred cEEEEecCCeEEEEE-CC-ceEEEEeeCC--ccccCeEECCCCcEEEE-eCCCceEEEccCC--cEEEeeecCCcccccc
Q 023085 6 VIYTATRDGWIKRLQ-DG-TWVNWKFIDS--QTLVGLTSTKEGHLIIC-DNANGLHKVSEDG--VENFLSYVNGSKLRFA 78 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~~-~~~~~~~~~~--~~~~~i~~d~dg~l~v~-~~~~gi~~~~~~g--~~~~~~~~~~~~~~~~ 78 (287)
.|..++.++.|..|+ .+ ....+..... .+...+++.+++++.++ ...+.|..++.++ ...+... ...+
T Consensus 133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h-----~~~v 207 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLH-----KAKV 207 (383)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECS-----SSCE
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccC-----CCcE
Confidence 466667888899998 43 3333332221 22227888999975554 4444577777434 4444321 2467
Q ss_pred ceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC----CeeEEeeccccccceEEEcc-CCCEEEEEe
Q 023085 79 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----NITTLVADGFYFANGVALSR-DEDYVVVCE 152 (287)
Q Consensus 79 ~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~i~~~~-~~~~l~v~~ 152 (287)
.++++.+++. ++++. ..++.|..+|..+ +..............++++| +++.++.+.
T Consensus 208 ~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 208 THAEFNPRCDWLMATS-----------------SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp EEEEECSSCTTEEEEE-----------------ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEE
T ss_pred EEEEECCCCCCEEEEE-----------------eCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEc
Confidence 8899999987 66652 2356777777654 33333223344567889999 998666665
Q ss_pred CCCCEEEEEEecCCCCc-ceeEEecc--CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 153 SWKFRCRKYWLKGERKG-KLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~-~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
..+.|..|++...+.. ....-... ....+-.....+++.+........+..
T Consensus 271 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~------------------------- 324 (383)
T 3ei3_B 271 -QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL------------------------- 324 (383)
T ss_dssp -SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-------------------------
T ss_pred -CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-------------------------
Confidence 4678999998643221 11100000 001122234444554444333211100
Q ss_pred cCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeCC
Q 023085 230 TLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 230 ~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+...+.|..++. .++.+..+..... ...+..+... ++++.+++ ..+.|.+++++
T Consensus 325 s~s~d~~i~iwd~~~~~~~~~l~~~~~--~~~~~~~~~s~~g~~l~s~-sd~~i~iw~~~ 381 (383)
T 3ei3_B 325 LLNDKRTIDIYDANSGGLVHQLRDPNA--AGIISLNKFSPTGDVLASG-MGFNILIWNRE 381 (383)
T ss_dssp CTTCCCCEEEEETTTCCEEEEECBTTB--CSCCCEEEECTTSSEEEEE-ETTEEEEEECC
T ss_pred ccCCCCeEEEEecCCCceeeeecCCCC--CceEEEEEEecCccEEEEe-cCCcEEEEecC
Confidence 0223467777875 4777777764221 1234444554 45544444 36788888874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00016 Score=62.46 Aligned_cols=220 Identities=12% Similarity=0.012 Sum_probs=122.6
Q ss_pred EecCCeEEEEE-CC--ce----EEEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEc-cCC-c-----EEEeeecCCc
Q 023085 10 ATRDGWIKRLQ-DG--TW----VNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG-V-----ENFLSYVNGS 73 (287)
Q Consensus 10 ~~~~g~i~~~~-~~--~~----~~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~-~~g-~-----~~~~~~~~~~ 73 (287)
++.+|.|..|+ +. +. ..+........ .+++.+ +++++++... +.|..++ .++ . +.+.... .
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~ 129 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVL-DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE--G 129 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEE-EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--C
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEE-EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--C
Confidence 34678888888 22 11 11111122234 788998 7776655434 3466666 443 2 1111110 1
Q ss_pred cccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee---ccccccceEEEccCCCEEE
Q 023085 74 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 74 ~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~ 149 (287)
....+..+++.+++ .++++. ..++.|..+|..+++..... ........++++|+++.++
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSA-----------------GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEE-----------------ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCeEEEEEECcCCCCEEEEE-----------------cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 12467889999987 566642 23567888888777654333 2334557889999998666
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEE-eccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
.+. ..+.|..||+...+ ....+ .......+..+++.++|++.++...
T Consensus 193 ~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----------------------------- 240 (402)
T 2aq5_A 193 TSC-RDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVSEGKILTTGFS----------------------------- 240 (402)
T ss_dssp EEE-TTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECSTTEEEEEEEC-----------------------------
T ss_pred EEe-cCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcCCCcEEEEecc-----------------------------
Confidence 665 46789999975431 12222 1111123677888899987776631
Q ss_pred ccCCCceEEEEECCCC-cE-EEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVAEDG-TI-IRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
....+.|..++.+. +. +........ ..+..+..+ +..|++++...+.|.++++
T Consensus 241 --~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 241 --RMSERQVALWDTKHLEEPLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp --TTCCEEEEEEETTBCSSCSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred --CCCCceEEEEcCccccCCceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 01135677777543 22 333332111 234555554 4567677766677777765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-05 Score=66.60 Aligned_cols=177 Identities=8% Similarity=-0.051 Sum_probs=93.0
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEe---eCCccccCeEECCCCcEEEE-eCCCceEEEc-cCCc--EEEeeecC
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDGV--ENFLSYVN 71 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~---~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g~--~~~~~~~~ 71 (287)
.++|. |..++.++.|..|+ ++....... ...... .+++.+++++.++ ...+.|..++ .++. .......
T Consensus 20 s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~- 97 (377)
T 3dwl_C 20 NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL- 97 (377)
T ss_dssp CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCCCEEECC-
T ss_pred CCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec-
Confidence 45675 44444788888888 443222211 122234 7889999865444 4344566666 4332 1221111
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe----eEEeec-cccccceEEEccCCC
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVAD-GFYFANGVALSRDED 146 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~-~~~~~~~i~~~~~~~ 146 (287)
.....+.++++.+++.++++. ...+.|..++..+++ ...+.. .......++++|+++
T Consensus 98 -~~~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 98 -RLNRAATFVRWSPNEDKFAVG-----------------SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp -CCSSCEEEEECCTTSSCCEEE-----------------ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred -ccCCceEEEEECCCCCEEEEE-----------------ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 122457788899888765541 234567777766554 233333 344567889999998
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcc-------------eeEEec-cCCCCCcceeeCCCCCEEEEEec
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGK-------------LETFAE-NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.++.+. ..+.|..|++....... ...... ...+....++++++|++.++...
T Consensus 160 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 225 (377)
T 3dwl_C 160 LLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH 225 (377)
T ss_dssp EEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred EEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence 666665 45678889875221100 111110 11223566888999875555543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=8.6e-05 Score=65.14 Aligned_cols=173 Identities=11% Similarity=0.032 Sum_probs=101.2
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEee--CCccccCeEECC-CCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~--~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
.|..|+.+|.|..|+ .+........ ...++.++++.| +++++++... +-|..+| ..+ ...+.... .....
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~ 211 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD--TINIW 211 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS--SCSCC
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC--CCCcc
Confidence 466788999999998 3433333221 123333889986 6666555434 3466677 555 44443221 11234
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
+..+++++++.++++ +...+.|..+|.++..+..+.........++++|+++.++++....+.
T Consensus 212 ~~~~~~~~~~~~l~~-----------------g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 212 FCSLDVSASSRMVVT-----------------GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp CCCEEEETTTTEEEE-----------------ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred EEEEEECCCCCEEEE-----------------EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 567889999987775 233567888887755444433334456788999998766666666678
Q ss_pred EEEEEecCCCCc-ceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 158 CRKYWLKGERKG-KLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 158 l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
|..||+...... ...... .-......++++++|++.++..
T Consensus 275 v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp CCEEETTTCCSSSCCSBCC-BCSSCEEECCBCTTSSEEEEEE
T ss_pred eeEEecccccccceEEEee-eccccccceeECCCCCeeEEEc
Confidence 888887532211 110000 1112345677888887655544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-05 Score=71.23 Aligned_cols=131 Identities=6% Similarity=-0.106 Sum_probs=77.9
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeCCc----cccCeEECCCCcE-EEEeCC---------CceEEEc-cCC-c
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ----TLVGLTSTKEGHL-IICDNA---------NGLHKVS-EDG-V 63 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~----~~~~i~~d~dg~l-~v~~~~---------~gi~~~~-~~g-~ 63 (287)
.+||.+.+.+.+|.|..++ +++.......... .. .+++.|||+. ..+... ..++.++ .++ .
T Consensus 25 spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 25 ISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred cCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 4677755556778898888 5555444433221 34 7899999974 444322 3467777 566 5
Q ss_pred EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-c--------
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-Y-------- 134 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-------- 134 (287)
+.+... ......+..++++++|+..+.. ..+.|+.++..+++...+.... .
T Consensus 104 ~~l~~~--~~~~~~~~~~~~SPdG~~la~~------------------~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~ 163 (723)
T 1xfd_A 104 QSLDPP--EVSNAKLQYAGWGPKGQQLIFI------------------FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLS 163 (723)
T ss_dssp EECCCT--TCCSCCCSBCCBCSSTTCEEEE------------------ETTEEEEESSSSSCCEEEECCCBTTTEEEEEC
T ss_pred EeccCC--ccccccccccEECCCCCEEEEE------------------ECCeEEEEECCCCceEEEecCCCCCceECccc
Confidence 444221 1111235678889998643321 1247888888777655543321 1
Q ss_pred ----------ccceEEEccCCCEEEEEeC
Q 023085 135 ----------FANGVALSRDEDYVVVCES 153 (287)
Q Consensus 135 ----------~~~~i~~~~~~~~l~v~~~ 153 (287)
....++|+|||+.|+++..
T Consensus 164 ~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 164 DWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred ceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 1257899999998877653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00086 Score=55.15 Aligned_cols=213 Identities=12% Similarity=0.067 Sum_probs=118.2
Q ss_pred CCC-cEEEEecCCeEEEEE--CC---c-eEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEccCC-cEEEeeecCCc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DG---T-WVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSEDG-VENFLSYVNGS 73 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~---~-~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~~~g-~~~~~~~~~~~ 73 (287)
++| .|..++.+|.|..|+ +. + ...+........ .+.+ +++ ++.+...+.+..++... ...+...
T Consensus 69 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---- 141 (313)
T 3odt_A 69 SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC-SLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAH---- 141 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE-EEEE--ETTEEEEEETTSEEEEEETTEEEEEEECC----
T ss_pred CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE-EEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccC----
Confidence 445 466666788887777 21 1 112211122223 5555 344 44445444466665222 3333211
Q ss_pred cccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEEccCCCEEEEE
Q 023085 74 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 74 ~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~v~ 151 (287)
...+..+.+.+ ++..+++ ....+.|..+|.. .....+.. .......++++|++. ++.+
T Consensus 142 -~~~v~~~~~~~~~~~~l~~-----------------~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 201 (313)
T 3odt_A 142 -NASVWDAKVVSFSENKFLT-----------------ASADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-FISC 201 (313)
T ss_dssp -SSCEEEEEEEETTTTEEEE-----------------EETTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-EEEE
T ss_pred -CCceeEEEEccCCCCEEEE-----------------EECCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-EEEc
Confidence 13455666665 6665554 1234667777743 23333332 344567788999887 5544
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
...+.|..|++...+ ....+. ...+....+++.++|.|..++..
T Consensus 202 -~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d-------------------------------- 245 (313)
T 3odt_A 202 -SNDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNGDIVSCGED-------------------------------- 245 (313)
T ss_dssp -ETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSCEEEEETT--------------------------------
T ss_pred -cCCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCCCEEEEecC--------------------------------
Confidence 456789999975432 122222 22234677889999976666554
Q ss_pred CCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 232 GGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|..++. .++.+..+....+ .+..+... ++++.. ....+.|.++++
T Consensus 246 ---g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~-~~~dg~i~iw~~ 294 (313)
T 3odt_A 246 ---RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIV-GSSDNLVRIFSQ 294 (313)
T ss_dssp ---SEEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEE-EETTSCEEEEES
T ss_pred ---CEEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEE-EeCCCcEEEEeC
Confidence 57888885 4677777765432 46667665 566554 445667877775
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00047 Score=68.45 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=102.0
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.++|. |..++.+|.|..|+ +++...... ...... .+++.++|++.++... +.|..++ .++ ...+..
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~----- 697 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE----- 697 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-----
Confidence 45664 55566888899999 444332222 223334 8899999976555433 4577777 666 444322
Q ss_pred cccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEE
Q 023085 74 KLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVV 150 (287)
Q Consensus 74 ~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v 150 (287)
....+..+++.++ +.+.++ +...+.|..+|..+++... +.........++++|+++.++.
T Consensus 698 ~~~~v~~~~~~~~~~~~~l~s-----------------g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 698 HSEQVNCCHFTNKSNHLLLAT-----------------GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp CSSCEEEEEECSSSSCCEEEE-----------------EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred CCCcEEEEEEecCCCceEEEE-----------------EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence 1235677888774 345553 2235678888877666433 3333445678899999996665
Q ss_pred EeCCCCEEEEEEecCCCCcceeEEe------------ccCCCCCcceeeCCCCCEEEEEec
Q 023085 151 CESWKFRCRKYWLKGERKGKLETFA------------ENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+. ..+.|..|++..... ...+. .........+++.++|+..++...
T Consensus 761 ~s-~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 761 CS-ADGTLRLWDVRSANE--RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp EE-SSSEEEEEEGGGTEE--EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred EE-CCCeEEEEeCCCCcc--cceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 54 467899998764311 11110 001113456778899987776654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0003 Score=65.48 Aligned_cols=163 Identities=12% Similarity=0.145 Sum_probs=90.3
Q ss_pred CeEEEEE--CCceEEEEeeC---CccccCeEECCCCc-EEEEeCCC-----ceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 14 GWIKRLQ--DGTWVNWKFID---SQTLVGLTSTKEGH-LIICDNAN-----GLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 14 g~i~~~~--~~~~~~~~~~~---~~~~~~i~~d~dg~-l~v~~~~~-----gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
..|+.++ +++........ ..+. .+++.+||+ |+++.... .|+.++ .+| ...+...........+.
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLT-NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEE-EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCceEeeccCCCCceeEe-eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 4677777 44433332211 1223 678899997 66654332 578888 565 33332221111111235
Q ss_pred eEEEcC--CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccce-EEEccCCCEEEEEeCCCC
Q 023085 80 DVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESWKF 156 (287)
Q Consensus 80 ~l~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l~v~~~~~~ 156 (287)
.+++.+ +|.++++... .....||.++...+.+..+......... ++++|+++.|+++....+
T Consensus 314 ~~~~sp~~dg~~l~~~~~---------------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRR---------------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp CCEECTTCSSEEEEEECT---------------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred CceeecCCCCEEEEEEcc---------------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 678888 8875443111 1235789998665555555433222334 689999998988876654
Q ss_pred ----EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEE
Q 023085 157 ----RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 157 ----~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 197 (287)
.|++++.++.. ...+. .......+++.++|+..+..
T Consensus 379 ~~~~~l~~~d~~~~~---~~~l~--~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 379 PLERHFYCIDIKGGK---TKDLT--PESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp TTCBEEEEEETTCCC---CEESC--CSSSEEEEEECTTSSEEEEE
T ss_pred CceEEEEEEEcCCCC---ceecc--CCCceEEEEECCCCCEEEEE
Confidence 78888865432 11111 11224567788888755544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-05 Score=78.58 Aligned_cols=221 Identities=10% Similarity=0.042 Sum_probs=129.6
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccc
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
.++| .|..++.+|.|..|+ +++............ .+++.+++++..+...+.+..++ .++ ...+... .
T Consensus 1012 s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----~ 1085 (1249)
T 3sfz_A 1012 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK-DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH-----Q 1085 (1249)
T ss_dssp CSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE-EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECC-----S
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE-EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEccc-----C
Confidence 3566 466666888899998 444433322223334 77888999888887666688888 666 4444221 2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+.++++.++|..+++. ...+.|..++..+++... +.........++++|+++.+..+. .
T Consensus 1086 ~~v~~~~~s~d~~~l~s~-----------------s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~-~ 1147 (1249)
T 3sfz_A 1086 GTVLSCAISSDATKFSST-----------------SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD-D 1147 (1249)
T ss_dssp SCCCCEEECSSSSSCEEE-----------------CCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEE-T
T ss_pred CcEEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEe-C
Confidence 357789999998766642 234556667665554322 222233456788999999766665 4
Q ss_pred CCEEEEEEecCCCC-cceeEE-----eccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 155 KFRCRKYWLKGERK-GKLETF-----AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 155 ~~~l~~~~~~~~~~-~~~~~~-----~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
.+.|..|++..++. ...... .....+.+..+++.++|.+.++...
T Consensus 1148 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g----------------------------- 1198 (1249)
T 3sfz_A 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG----------------------------- 1198 (1249)
T ss_dssp TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESS-----------------------------
T ss_pred CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCC-----------------------------
Confidence 56788898864321 111000 0112234678999999976665532
Q ss_pred ccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.|..++. .++.+..+.... ..+..+... +++..++.-..+.|.++++
T Consensus 1199 -------~v~vwd~~~g~~~~~~~~~~----~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1199 -------YLKWWNVATGDSSQTFYTNG----TNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp -------SEEEBCSSSCBCCCCCCCSS----CCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred -------eEEEEECCCCceeeeeeccC----CcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 4556664 355544444222 234445554 4554455556668887775
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00083 Score=56.53 Aligned_cols=223 Identities=9% Similarity=-0.018 Sum_probs=122.6
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECC-CCcEEEE-eCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGHLIIC-DNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~-dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
.|..++.+|.|..|+ +++..........+...+++.+ +++++++ ...+.|..++ .++ ......... .....+.
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~ 165 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVL 165 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-SCSSCEE
T ss_pred EEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-cccCcee
Confidence 466777889999999 4544333332223333888998 7875555 4445588888 666 322211101 1234678
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-----------------------------
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----------------------------- 130 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------------------------- 130 (287)
++++++++..+++. ..++.|..+|..+++.....
T Consensus 166 ~~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 166 SADYDLLGEKIMSC-----------------GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEECTTSSEEEEE-----------------ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred EEEECCCCCEEEEe-----------------cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 89999998876642 23456777777654321100
Q ss_pred ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCC------------cceeEEeccCCCCCcceeeCCC--CCEEEE
Q 023085 131 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK------------GKLETFAENLPGAPDNINLAPD--GTFWIA 196 (287)
Q Consensus 131 ~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~i~~d~~--G~lwv~ 196 (287)
........++++ ++ ++++....+.|..|++..... .....+. ........+++.++ |++.++
T Consensus 229 ~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEE
Confidence 012233456666 55 444445578899999864321 0011111 11223556777666 876665
Q ss_pred EeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC-c----EEEEEECCCCccccceEEEEEe-CCE
Q 023085 197 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG-T----IIRNLVDPTGQLMSFVTSGLQV-DNH 270 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~----~~~~~~~~~~~~~~~~~~~~~~-~g~ 270 (287)
... .+.|..++.+. + ....+.... ....+..+... +++
T Consensus 305 ~~~----------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 305 GNQ----------------------------------VGKLYVWDLEVEDPHKAKCTTLTHHK--CGAAIRQTSFSRDSS 348 (366)
T ss_dssp ECT----------------------------------TSCEEEEECCSSSGGGCEEEEECCTT--CCSCEEEEEECTTSS
T ss_pred Eec----------------------------------CCcEEEEECCCCCCccccceEEcccc--cCCceEEEEeCCCCC
Confidence 544 24566666543 2 333444321 02356777775 566
Q ss_pred EEEEecCCCeEEEEeC
Q 023085 271 LYVISLTSNFIGKVQL 286 (287)
Q Consensus 271 l~i~~~~~~~i~~~~~ 286 (287)
+.++.-..+.|.++|+
T Consensus 349 ~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 349 ILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEEETTSEEEEEEC
T ss_pred eEEEEeCCCEEEEEEe
Confidence 5555556678888876
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00036 Score=61.36 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=84.5
Q ss_pred CCCCcE--EEEecCCeEEEEE-C---CceE-EEE--eeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEE-Eee
Q 023085 2 DKNGVI--YTATRDGWIKRLQ-D---GTWV-NWK--FIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VEN-FLS 68 (287)
Q Consensus 2 d~~G~l--~~~~~~g~i~~~~-~---~~~~-~~~--~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~-~~~ 68 (287)
.++|.. ..++.+|.|..|+ . ++.. .+. .....+. .+++.++|+ |+++.....++.++ .++ ... ...
T Consensus 111 s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~ 189 (450)
T 2vdu_B 111 TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN-AISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQE 189 (450)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCC
T ss_pred cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce-EEEEcCCCCEEEEEeCCCcEEEEecCCcccccccce
Confidence 466754 3455788888888 4 3332 222 1223445 889999996 45555444577777 555 221 000
Q ss_pred ecCCccccccceEEEcCC---CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE-Eee-ccccccceEEEcc
Q 023085 69 YVNGSKLRFANDVVEASD---GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVA-DGFYFANGVALSR 143 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~---g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~-~~~~~~~~i~~~~ 143 (287)
... .....+.++++.++ +.++++. ...+.|..+|..+++.. .+. ........++|+
T Consensus 190 ~~~-~h~~~v~~~~~sp~~~~~~~l~s~-----------------~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s- 250 (450)
T 2vdu_B 190 PIL-GHVSMLTDVHLIKDSDGHQFIITS-----------------DRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250 (450)
T ss_dssp CSE-ECSSCEEEEEEEECTTSCEEEEEE-----------------ETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred eee-cccCceEEEEEcCCCCCCcEEEEE-----------------cCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence 000 11245778899988 8766642 22456666766555432 222 333456788999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCC
Q 023085 144 DEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
+++.|+.+. ..+.|..||+...
T Consensus 251 d~~~l~s~~-~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 251 KDYLLLSAG-GDDKIFAWDWKTG 272 (450)
T ss_dssp STTEEEEEE-SSSEEEEEETTTC
T ss_pred CCCEEEEEe-CCCeEEEEECCCC
Confidence 898666665 5678999997643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0012 Score=54.33 Aligned_cols=214 Identities=9% Similarity=0.073 Sum_probs=116.9
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
.|..++.+|.|..|+ ++...........+...+++.+++++.++ ...+.+..++ .+. ...+.... .....+.
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~--~~~~~i~ 108 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI--GHQGNVC 108 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC--CCSSCEE
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh--hcccCEE
Confidence 577777889999998 44433333332333338899999976555 4333455555 322 12111111 1123456
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc-CCCEEEEEeCCCCEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-DEDYVVVCESWKFRC 158 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~l~v~~~~~~~l 158 (287)
.+.. ++.++++ +...+.|..+|.. .....+.........+++.+ +++.++.+. ..+.|
T Consensus 109 ~~~~--~~~~l~~-----------------~~~d~~i~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i 167 (313)
T 3odt_A 109 SLSF--QDGVVIS-----------------GSWDKTAKVWKEG-SLVYNLQAHNASVWDAKVVSFSENKFLTAS-ADKTI 167 (313)
T ss_dssp EEEE--ETTEEEE-----------------EETTSEEEEEETT-EEEEEEECCSSCEEEEEEEETTTTEEEEEE-TTSCE
T ss_pred EEEe--cCCEEEE-----------------EeCCCCEEEEcCC-cEEEecccCCCceeEEEEccCCCCEEEEEE-CCCCE
Confidence 6666 3444443 2235677778732 33333333344456677777 777666555 45778
Q ss_pred EEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEE
Q 023085 159 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLI 238 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (287)
..|+.. .....+..........+++.+++.+..++.. +.|.
T Consensus 168 ~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d-----------------------------------g~i~ 208 (313)
T 3odt_A 168 KLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISCSND-----------------------------------GLIK 208 (313)
T ss_dssp EEEETT----EEEEEECSSCSSCEEEEEEEETTEEEEEETT-----------------------------------SEEE
T ss_pred EEEecC----ceEEEEeccCcccEEEEEEcCCCeEEEccCC-----------------------------------CeEE
Confidence 888822 1122222113334567888888885555544 4677
Q ss_pred EECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 239 HVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 239 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.++.+ ++.+..+....+ .+..+... +++|..++ ..+.|.++++
T Consensus 209 i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~l~~~~-~dg~v~iwd~ 253 (313)
T 3odt_A 209 LVDMHTGDVLRTYEGHES----FVYCIKLLPNGDIVSCG-EDRTVRIWSK 253 (313)
T ss_dssp EEETTTCCEEEEEECCSS----CEEEEEECTTSCEEEEE-TTSEEEEECT
T ss_pred EEECCchhhhhhhhcCCc----eEEEEEEecCCCEEEEe-cCCEEEEEEC
Confidence 77754 666666664332 46666665 45554444 4456666664
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00027 Score=60.72 Aligned_cols=213 Identities=11% Similarity=0.029 Sum_probs=124.8
Q ss_pred CccccCeEEC-CCCcEEEEeCC--Cc----eEEEc-c--------CC-c-EEEeeecCCccccccceEEEcCCCcEEEEc
Q 023085 32 SQTLVGLTST-KEGHLIICDNA--NG----LHKVS-E--------DG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTV 93 (287)
Q Consensus 32 ~~~~~~i~~d-~dg~l~v~~~~--~g----i~~~~-~--------~g-~-~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~ 93 (287)
..|. ++++| .+|+++++... .| +..++ . ++ + +++..-.....+.++..+.+|+.|+|||.|
T Consensus 26 ~~P~-gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLD 104 (381)
T 3q6k_A 26 MIST-AFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVD 104 (381)
T ss_dssp CCCC-EEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEE
T ss_pred ccee-eeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEe
Confidence 4567 89994 89999999644 22 55555 2 22 4 554321112346788999999999999998
Q ss_pred CCCCCCCcceeeeeecc---CCCceEEEEeCCCC--eeE-Eeec------cccccceEEEc---cC----CCEEEEEeCC
Q 023085 94 SSSKYLPHEYCLDILEG---KPHGQLLKYDPSSN--ITT-LVAD------GFYFANGVALS---RD----EDYVVVCESW 154 (287)
Q Consensus 94 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~--~~~-~~~~------~~~~~~~i~~~---~~----~~~l~v~~~~ 154 (287)
.+..-..+.. .. ...-.|+.+|+.++ ++. .+.- ..+..+.++++ ++ +...|++++.
T Consensus 105 tG~~~~~~~~-----~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~ 179 (381)
T 3q6k_A 105 IGSVEYRSRG-----AKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL 179 (381)
T ss_dssp CSSCSSCSTT-----GGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT
T ss_pred CCCcCcCCCc-----cccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC
Confidence 7731110000 01 23347999999888 643 3321 12345678888 22 5689999999
Q ss_pred CCEEEEEEecCCCCccee----------EE-ecc----CCCCCcceeeCCC----C-CEEEEEeccchhHHHHhhcchhH
Q 023085 155 KFRCRKYWLKGERKGKLE----------TF-AEN----LPGAPDNINLAPD----G-TFWIAIIKLDARRMKILNSSKLI 214 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~----------~~-~~~----~~~~~~~i~~d~~----G-~lwv~~~~~~~~~~~~~~~~~~~ 214 (287)
...|.+||+..++..+.. .+ ... .....++|+++++ + .||.+...+
T Consensus 180 ~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-------------- 245 (381)
T 3q6k_A 180 RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-------------- 245 (381)
T ss_dssp TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC--------------
T ss_pred CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC--------------
Confidence 999999998754211111 00 000 0123567888765 3 588887662
Q ss_pred HHHHHhCCccccccccCCCceEEEEEC------CC-CcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEe
Q 023085 215 KHVLAAYPKLFSQFITLGGGAHLIHVA------ED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~ 285 (287)
..++++. +. ...++.+... | ......+...+ .|.||++....+.|.+.+
T Consensus 246 --------------------~~ly~V~T~~L~~~~~~~~v~~~G~k-g-~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~ 303 (381)
T 3q6k_A 246 --------------------IKVYSVNTKELKQKGGKLNPELLGNR-G-KYNDAIALAYDPKTKVIFFAEANTKQVSCWN 303 (381)
T ss_dssp --------------------SEEEEEEHHHHSSTTCCCCCEEEEEC-C-TTCCEEEEEECTTTCEEEEEESSSSEEEEEE
T ss_pred --------------------CcEEEEEHHHhhCcchhhceEEeeec-C-CCCCcceEEEeCCCCeEEEEeccCCeEEEEe
Confidence 2455552 11 1223333321 1 11233445554 599999999999999876
Q ss_pred C
Q 023085 286 L 286 (287)
Q Consensus 286 ~ 286 (287)
.
T Consensus 304 ~ 304 (381)
T 3q6k_A 304 T 304 (381)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-05 Score=64.50 Aligned_cols=169 Identities=12% Similarity=0.099 Sum_probs=93.1
Q ss_pred ecCCeEEEEE---CCceEEEE------eeCCccccCeEECCCC-cEEEEeCCCceEEEc-cCC-cEEEeeec--C-----
Q 023085 11 TRDGWIKRLQ---DGTWVNWK------FIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG-VENFLSYV--N----- 71 (287)
Q Consensus 11 ~~~g~i~~~~---~~~~~~~~------~~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g-~~~~~~~~--~----- 71 (287)
+.+|.+..++ +++..... .....|. .+...+++ .+|+.+....++.++ ..+ ........ .
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 3666776666 34433111 1122333 33334455 455555445577787 433 33322110 0
Q ss_pred -CccccccceEEEcCC-CcEEEEcC-CCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 72 -GSKLRFANDVVEASD-GSLYFTVS-SSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 72 -~~~~~~~~~l~~d~~-g~l~v~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
+.....+..++++++ +.+|++.. .+..+. .......|+.+|..++++........ |.+++++|||+.|
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l 319 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLM 319 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEE
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEE
Confidence 000112233788887 57888642 100000 00123579999998887654433334 9999999999999
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
|+++. +.|..||.+..++.....+. .....|.+++++++|+
T Consensus 320 ~v~n~--~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 320 LTLDG--GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEECS--SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred EEeCC--CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 99884 78999997543212222221 2344689999999985
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00021 Score=60.54 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=85.5
Q ss_pred eEEEEeCCCCeeEEeec-------cccccceEEE--ccCCC--EEEEEeCCCCEEEEEEecCC---CCc--ceeEEeccC
Q 023085 115 QLLKYDPSSNITTLVAD-------GFYFANGVAL--SRDED--YVVVCESWKFRCRKYWLKGE---RKG--KLETFAENL 178 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~-------~~~~~~~i~~--~~~~~--~l~v~~~~~~~l~~~~~~~~---~~~--~~~~~~~~~ 178 (287)
.++.+|+.++++..+.. ....|.|+|+ ++... ++|+.+. .+.+..|++... +.. ..+.+ ..
T Consensus 102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~f--~l 178 (355)
T 3amr_A 102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRAF--KM 178 (355)
T ss_dssp EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEEE--EC
T ss_pred EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEEe--cC
Confidence 45666888777776632 2367899998 77543 4667665 478888887421 111 12222 24
Q ss_pred CCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--C----cEEEEEE
Q 023085 179 PGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--G----TIIRNLV 251 (287)
Q Consensus 179 ~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g----~~~~~~~ 251 (287)
++-|.+++.|+ .|.||++... .+|++|+++ + +.+..+.
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd-----------------------------------~GIw~~da~p~~~~~~~~v~~~~ 223 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEED-----------------------------------EAIWKFSAEPDGGSNGTVIDRAD 223 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETT-----------------------------------TEEEEEECSTTSCSCCEEEEEBS
T ss_pred CCCcceEEEcCCCCeEEEeccc-----------------------------------ceEEEEeCCcCCCCCceEEEEec
Confidence 55688999986 6899999986 379999843 3 2333322
Q ss_pred CCCCccccceEEEEEe-C----CEEEEEecCCCeEEEEeC
Q 023085 252 DPTGQLMSFVTSGLQV-D----NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~----g~l~i~~~~~~~i~~~~~ 286 (287)
.+.....+.++... . +.|++++...+...+|+.
T Consensus 224 --~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 224 --GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp --SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred --CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 23334456777663 2 579999999999999985
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00025 Score=61.30 Aligned_cols=172 Identities=16% Similarity=0.090 Sum_probs=103.0
Q ss_pred CCC--cEEEEecCCeEEEEE--CCceEEEE--e-eCCccccCeEECCCCcEEE-EeCCCceEEEc-cCC--cEEEeeecC
Q 023085 3 KNG--VIYTATRDGWIKRLQ--DGTWVNWK--F-IDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 3 ~~G--~l~~~~~~g~i~~~~--~~~~~~~~--~-~~~~~~~~i~~d~dg~l~v-~~~~~gi~~~~-~~g--~~~~~~~~~ 71 (287)
++| .|..++.++.|..|+ +++..... . ...... .+++.++|++++ +...+.|..++ +++ ...+...
T Consensus 141 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-- 217 (402)
T 2aq5_A 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP-- 217 (402)
T ss_dssp SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS--
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC--
Confidence 454 356667889999999 44433322 1 222334 788999996544 44445577788 666 3333111
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee--EEee-ccccccceEEEccCCCEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVA-DGFYFANGVALSRDEDYV 148 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~-~~~~~~~~i~~~~~~~~l 148 (287)
.....+..+++.++|.++++... ....+.|..+|..+++. .... ........++++|+++.|
T Consensus 218 -~~~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 218 -HEGTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp -SCSSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred -CCCCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 11124678889999987775210 02356788888765432 1111 223345678899999989
Q ss_pred EEEeCCCCEEEEEEecCCC--CcceeEEeccCCCCCcceeeCCCCCEE
Q 023085 149 VVCESWKFRCRKYWLKGER--KGKLETFAENLPGAPDNINLAPDGTFW 194 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~G~lw 194 (287)
+++....+.|..|++...+ ......+. ......++++.++|.+.
T Consensus 283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLE 328 (402)
T ss_dssp EEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSC
T ss_pred EEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEecccccc
Confidence 8888777889999987543 11222221 22346778888877553
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0013 Score=55.97 Aligned_cols=218 Identities=11% Similarity=0.055 Sum_probs=120.0
Q ss_pred CCCc-EEEEecCCeEEEEE-C-C-------ceEEEEeeCCccccCeEECCCCcE-EEEeCCCceEEEc-cCC--cEEEee
Q 023085 3 KNGV-IYTATRDGWIKRLQ-D-G-------TWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLS 68 (287)
Q Consensus 3 ~~G~-l~~~~~~g~i~~~~-~-~-------~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~g--~~~~~~ 68 (287)
++|. |..++.++.+..|+ . . ....+........ .+.+.+++.. ..+...+.|..++ +++ ...+..
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 4553 44455677777776 1 1 1112222222223 6788888864 4445444577777 666 344321
Q ss_pred ecCCccccccceEEEcC--CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCC
Q 023085 69 YVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDE 145 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 145 (287)
. ...+..+.+.+ +|.++++ +..++.|..+|..+++... +.......+.++++|++
T Consensus 195 h-----~~~v~~~~~~~~~~g~~l~s-----------------gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 195 H-----GADVLCLDLAPSETGNTFVS-----------------GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252 (354)
T ss_dssp C-----SSCEEEEEECCCSSCCEEEE-----------------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred C-----CCCeEEEEEEeCCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC
Confidence 1 12345566654 5666664 2235678888887776433 33334456788999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEecc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
+.+..+. ..+.|..||+... .....+... .......+++.++|++.++...
T Consensus 253 ~~l~s~s-~D~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------------------------- 304 (354)
T 2pbi_B 253 DAFASGS-DDATCRLYDLRAD--REVAIYSKESIIFGASSVDFSLSGRLLFAGYN------------------------- 304 (354)
T ss_dssp SEEEEEE-TTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECTTSSEEEEEET-------------------------
T ss_pred CEEEEEe-CCCeEEEEECCCC--cEEEEEcCCCcccceeEEEEeCCCCEEEEEEC-------------------------
Confidence 8655554 5678899987532 112222111 1112356778889987666654
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 225 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
.+.|..++. .++.+..+.... ..++++... +++..+++-..+.|.++
T Consensus 305 ---------d~~i~vwd~~~~~~~~~l~~h~----~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 305 ---------DYTINVWDVLKGSRVSILFGHE----NRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ---------TSCEEEEETTTCSEEEEECCCS----SCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred ---------CCcEEEEECCCCceEEEEECCC----CcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 245666764 466666654322 346777765 45544444444455543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0008 Score=63.25 Aligned_cols=244 Identities=14% Similarity=0.047 Sum_probs=124.7
Q ss_pred CCCCc-EEEEecC---------CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEE
Q 023085 2 DKNGV-IYTATRD---------GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENF 66 (287)
Q Consensus 2 d~~G~-l~~~~~~---------g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~ 66 (287)
.+||. |.+++.. +.++.++ +++...+........ ..++.|||+ |..+ ....|+..+ .+| ...+
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEE-ECCeEEEEECCCCceEEE
Confidence 46774 5565532 5566777 455443322222334 678899996 5444 356799888 666 5554
Q ss_pred eeec-CCcc-------------ccccceEEEcCCCc-EEEE--cCCCCCCCcceee--------------ee---eccC-
Q 023085 67 LSYV-NGSK-------------LRFANDVVEASDGS-LYFT--VSSSKYLPHEYCL--------------DI---LEGK- 111 (287)
Q Consensus 67 ~~~~-~~~~-------------~~~~~~l~~d~~g~-l~v~--~~~~~~~~~~~~~--------------~~---~~~~- 111 (287)
.... .... +....+++..+||. |.++ |.. ....|.. .. ..+.
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~---~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~ 224 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT---EVPLIEYSFYSDESLQYPKTVRVPYPKAGAV 224 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT---TCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc---CCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence 3211 0000 12224578899996 3332 111 1111110 00 0011
Q ss_pred -CCceEEEEeCCC---C---eeEEeec------cccccceEEEccCCCEEE-EEeCCC--CEEEEEEecCCC----Ccce
Q 023085 112 -PHGQLLKYDPSS---N---ITTLVAD------GFYFANGVALSRDEDYVV-VCESWK--FRCRKYWLKGER----KGKL 171 (287)
Q Consensus 112 -~~~~v~~~~~~~---~---~~~~~~~------~~~~~~~i~~~~~~~~l~-v~~~~~--~~l~~~~~~~~~----~~~~ 171 (287)
....|+.+|.++ + +...+.. .......++|+|||+.++ +..... ..|+.++.++++ ....
T Consensus 225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~ 304 (740)
T 4a5s_A 225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA 304 (740)
T ss_dssp CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence 123688889887 6 4444432 222345678999998443 333322 268888887543 1111
Q ss_pred eEE-eccCCCC-----CcceeeCCCCCEE--EEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC
Q 023085 172 ETF-AENLPGA-----PDNINLAPDGTFW--IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 243 (287)
Q Consensus 172 ~~~-~~~~~~~-----~~~i~~d~~G~lw--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (287)
... .....+. +...++.+||+.+ ..+.. .....|+.++.+
T Consensus 305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~--------------------------------~G~~~l~~~~~~ 352 (740)
T 4a5s_A 305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE--------------------------------EGYRHICYFQID 352 (740)
T ss_dssp GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT--------------------------------TSCEEEEEEETT
T ss_pred EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC--------------------------------CCceEEEEEECC
Confidence 111 1111111 3367888999732 23222 113578999988
Q ss_pred CcEEEEEECCCCccccceEE-EEEeCCEEEEEecC------CCeEEEEeC
Q 023085 244 GTIIRNLVDPTGQLMSFVTS-GLQVDNHLYVISLT------SNFIGKVQL 286 (287)
Q Consensus 244 g~~~~~~~~~~~~~~~~~~~-~~~~~g~l~i~~~~------~~~i~~~~~ 286 (287)
++....++... ..+.. ...+++.||+.+.. ...|.++++
T Consensus 353 ~~~~~~lT~g~----~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 353 KKDCTFITKGT----WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp CSSCEESCCSS----SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred CCceEecccCC----EEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 87777666422 12222 23457788887765 235666654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00074 Score=56.04 Aligned_cols=137 Identities=9% Similarity=0.032 Sum_probs=82.8
Q ss_pred CeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
++++.|+|.+.++... +.|..++ .++ ...+... ...+..+++.+++.+.++ +..
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s-----------------~s~ 75 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT-----ETPVRAGKFIARKNWIIV-----------------GSD 75 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEEEGGGTEEEE-----------------EET
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc-----CCcEEEEEEeCCCCEEEE-----------------ECC
Confidence 8999999986665434 4466667 566 3333211 134667888888887775 223
Q ss_pred CceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-C
Q 023085 113 HGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-D 190 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~ 190 (287)
++.|..+|..+++.. .+.........++++|+++.++.+ +..+.|..|++.... .....+. .-......+++.+ +
T Consensus 76 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~~-~~~~~~~-~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNW-ALEQTFE-GHEHFVMCVAFNPKD 152 (304)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE-ETTSCEEEEEGGGTT-EEEEEEC-CCCSCEEEEEECTTC
T ss_pred CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEE-CCCCeEEEEECCCCc-chhhhhc-ccCCcEEEEEECCCC
Confidence 567888888766643 333344556788999999865554 456789999875421 1111121 1122356678887 5
Q ss_pred CCEEEEEe
Q 023085 191 GTFWIAII 198 (287)
Q Consensus 191 G~lwv~~~ 198 (287)
+.+.++..
T Consensus 153 ~~~l~sgs 160 (304)
T 2ynn_A 153 PSTFASGC 160 (304)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 56555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00052 Score=64.76 Aligned_cols=171 Identities=12% Similarity=0.037 Sum_probs=99.2
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcE-EEEeCCCceEEEc-cCC--cEEEeeecCCcc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
++| .|.+++.+|.|..|+ +++...... ...... .+++.++|+. ..+...+.|..++ .++ ....... .
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG----H 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC----C
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC----C
Confidence 455 466777889999999 454433322 233344 8899999964 4444444577777 444 2222111 1
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eecc-ccccceEEEcc--CCCEEE
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG-FYFANGVALSR--DEDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-~~~~~~i~~~~--~~~~l~ 149 (287)
...+..+++.+ ++.++++ +...+.|..++..++.... +... ......++++| ++..++
T Consensus 140 ~~~v~~~~~~p~~~~~l~~-----------------~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFAS-----------------GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp SSCEEEEEEETTEEEEEEE-----------------EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred CCcEEEEEEEcCCCCEEEE-----------------EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 23567888888 6766664 2235678888876544322 2222 24456788888 888665
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++. ..+.|..|+....+ ....+. ...+....+++.++|.+.++...
T Consensus 203 ~~~-~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 203 TAS-DDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp EEC-TTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred EEe-CCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence 554 56789999875421 122222 12233566788888875555543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00043 Score=67.70 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=81.8
Q ss_pred cEEEEecCCeEE-EEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIK-RLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~-~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
.|++++..+.|+ .++ .++...+........ .+++++||+ |+++.....|+.++ .+| ...+.... ...+.
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~----~~~v~ 424 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR----EAMIT 424 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS----SSCCC
T ss_pred eEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC----CCCcc
Confidence 455555666777 777 444444332223344 788999997 44555445788898 677 55553221 13457
Q ss_pred eEEEcCCCcEEEEcCC-C--CCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 80 DVVEASDGSLYFTVSS-S--KYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~-~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.++++++|...++... . ++ .......|+.+|..+++...+.........++|+|||+.|++...
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~----------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGET----------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTT----------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred ceEECCCCCeEEEEecCccccc----------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 7899999985443111 0 00 001235799999887876655554455667889999998888765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0011 Score=57.71 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=62.3
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeEEe--------eccccccceEEEccCC-
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLV--------ADGFYFANGVALSRDE- 145 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~--------~~~~~~~~~i~~~~~~- 145 (287)
..+.++++.++|.++++. .++.|..+|..+ ++.... .........++++|++
T Consensus 178 ~~v~~~~~~~~~~~l~s~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 239 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA------------------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC 239 (447)
T ss_dssp SCCCEEEECTTSSEEEEE------------------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred cceEEEEEcCCCCEEEEe------------------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence 457789999999887752 356777787762 222211 1122345678899998
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCc--ceeEEeccCC-----------CCCcceeeCCCCCEEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKG--KLETFAENLP-----------GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.++.+ ...+.|..||+...... ....+..... +....+++.++|++.++...
T Consensus 240 ~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 240 NTFVYS-SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp TEEEEE-ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred cEEEEE-eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 655554 45678999997643321 1222221111 13567888999987666543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0019 Score=58.93 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=28.4
Q ss_pred eEEEEECC-CCcEEEEEECCCCccccceEEEEEeCCEEEEEecCC
Q 023085 235 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 278 (287)
Q Consensus 235 ~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 278 (287)
+.|+.+|. .|+.++.+....+. ...+.. ...+|++|++...+
T Consensus 485 g~l~a~D~~tG~~lw~~~~~~~~-~~~p~~-~~~~G~~yv~~~~G 527 (571)
T 2ad6_A 485 GYLKALDNKDGKELWNFKMPSGG-IGSPMT-YSFKGKQYIGSMYG 527 (571)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC-CSCCEE-EEETTEEEEEEEEC
T ss_pred CeEEEEECCCCCEEEEEeCCCCc-EeeeEE-EEECCEEEEEEECC
Confidence 68999996 49999999875432 222222 23689999987643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.001 Score=56.85 Aligned_cols=188 Identities=11% Similarity=0.058 Sum_probs=109.4
Q ss_pred CeEECCCCcE-EEEeCC-Cc-eEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 37 GLTSTKEGHL-IICDNA-NG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 37 ~i~~d~dg~l-~v~~~~-~g-i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
.+++.|||++ .+++.. .+ |...+ +++ ...+ .. ...+.++++.++|.+.++.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~-----~~~V~~v~fspdg~~l~s~----------------- 194 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ET-----RGEVKDLHFSTDGKVVAYI----------------- 194 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-EC-----SSCCCEEEECTTSSEEEEE-----------------
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CC-----CCceEEEEEccCCceEEec-----------------
Confidence 5789999974 456533 34 56666 566 2222 11 2357899999999987752
Q ss_pred CCCceEEEEeCCCCeeEEee---ccccccceEEEccCCCEEEEEeCCCC---EEEEEEecCCCCcc--eeEEeccCCCCC
Q 023085 111 KPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGK--LETFAENLPGAP 182 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~v~~~~~~---~l~~~~~~~~~~~~--~~~~~~~~~~~~ 182 (287)
..+.+.+++..+++..... ........++|+|+++.+..+...+. .++.++........ ...+. ......
T Consensus 195 -s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V 272 (365)
T 4h5i_A 195 -TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGI 272 (365)
T ss_dssp -CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCE
T ss_pred -cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCe
Confidence 1235666665555433221 12234567889999987776654332 46666654321111 11111 122235
Q ss_pred cceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccce
Q 023085 183 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFV 261 (287)
Q Consensus 183 ~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~ 261 (287)
..+++.++|++.++... .+.|..+|.+ ++.+..+.. +. ...+
T Consensus 273 ~~~~~Spdg~~lasgs~----------------------------------D~~V~iwd~~~~~~~~~~~~--gH-~~~V 315 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASN----------------------------------DNSIALVKLKDLSMSKIFKQ--AH-SFAI 315 (365)
T ss_dssp EEEEECTTSCEEEEEET----------------------------------TSCEEEEETTTTEEEEEETT--SS-SSCE
T ss_pred EeEEECCCCCceEEEcC----------------------------------CCEEEEEECCCCcEEEEecC--cc-cCCE
Confidence 67889999986665544 2456677754 566655432 21 2357
Q ss_pred EEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 262 TSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 262 ~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+++.+. ++++.++.-.-+.|.++++
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 788876 6776666666678888776
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00038 Score=59.01 Aligned_cols=143 Identities=9% Similarity=0.017 Sum_probs=79.5
Q ss_pred CeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.+++.|+|++.++... +.|..++ .++ ......... .....+.++++.++|.++++. ..+
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~-----------------s~D 82 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASA-----------------SFD 82 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTSSEEEEE-----------------ETT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCCCEEEEE-----------------ECC
Confidence 7889999976655433 4466666 444 222111111 123467889999999877752 223
Q ss_pred ceEEEEeCCCCee---EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 114 GQLLKYDPSSNIT---TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 114 ~~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
+.+..++..++.. ..+.........++++|+++.|..+. ..+.|..|++..............-......+++.++
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS-RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 4455554443332 22223334567889999998666554 4677999988643211111111111223456778888
Q ss_pred CCEEEEEe
Q 023085 191 GTFWIAII 198 (287)
Q Consensus 191 G~lwv~~~ 198 (287)
|++.++..
T Consensus 162 ~~~l~s~s 169 (345)
T 3fm0_A 162 QELLASAS 169 (345)
T ss_dssp SSCEEEEE
T ss_pred CCEEEEEe
Confidence 86555443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.002 Score=56.47 Aligned_cols=217 Identities=11% Similarity=-0.011 Sum_probs=116.7
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
+.|..++.+|.|..|+ +++..........++..+++.+++.+..+...+.|..++ .++ ...+. . ....+.
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~----h~~~v~ 207 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-G----HNSTVR 207 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-C----CSSCEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-C----CCCccE
Confidence 3566777889999999 454433322222233378888888666666556688888 666 33332 1 123455
Q ss_pred eEEEc--CCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee----------------------ccccc
Q 023085 80 DVVEA--SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----------------------DGFYF 135 (287)
Q Consensus 80 ~l~~d--~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------------------~~~~~ 135 (287)
.+++. +++.+.++. ..++.|..++..++...... .....
T Consensus 208 ~l~~~~~~~~~~l~s~-----------------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 208 CLDIVEYKNIKYIVTG-----------------SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp EEEEEESSSCEEEEEE-----------------ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred EEEEecCCCCCEEEEE-----------------cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 66665 455555542 22445666665433211100 00000
Q ss_pred cceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHH
Q 023085 136 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK 215 (287)
Q Consensus 136 ~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~ 215 (287)
..-.+++++++.++.+. ..+.|..||+...+ ....+. ........++++++|+..++...
T Consensus 271 ~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~---------------- 330 (464)
T 3v7d_B 271 ASVRTVSGHGNIVVSGS-YDNTLIVWDVAQMK--CLYILS-GHTDRIYSTIYDHERKRCISASM---------------- 330 (464)
T ss_dssp SCEEEEEEETTEEEEEE-TTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEETTTTEEEEEET----------------
T ss_pred ceEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--EEEEec-CCCCCEEEEEEcCCCCEEEEEeC----------------
Confidence 11124567788666665 45779999875321 112221 12234567888888876665544
Q ss_pred HHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 216 HVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++.+..+.... ..+..+..++..|..++ ..+.|.++++
T Consensus 331 ------------------dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~s~s-~dg~v~vwd~ 379 (464)
T 3v7d_B 331 ------------------DTTIRIWDLENGELMYTLQGHT----ALVGLLRLSDKFLVSAA-ADGSIRGWDA 379 (464)
T ss_dssp ------------------TSCEEEEETTTTEEEEEECCCS----SCEEEEEECSSEEEEEE-TTSEEEEEET
T ss_pred ------------------CCcEEEEECCCCcEEEEEeCCC----CcEEEEEEcCCEEEEEe-CCCcEEEEEC
Confidence 2456667753 66666665332 23556665555554444 4456666665
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00039 Score=64.81 Aligned_cols=190 Identities=11% Similarity=-0.010 Sum_probs=96.3
Q ss_pred CCCCc-EEEEecC---------CeEEEEE--CCceEEEEeeCC---ccccCeEECCCCc-EEEEeCCCceEEEc-cCC-c
Q 023085 2 DKNGV-IYTATRD---------GWIKRLQ--DGTWVNWKFIDS---QTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-V 63 (287)
Q Consensus 2 d~~G~-l~~~~~~---------g~i~~~~--~~~~~~~~~~~~---~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~ 63 (287)
.+||. |.+++.+ +.|+.++ +++...+..... ... .+++.|||+ |.++. ...|++++ .++ .
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~-~~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIF-ENNIYYCAHVGKQA 146 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEE-TTEEEEESSSSSCC
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEE-CCeEEEEECCCCce
Confidence 46775 5555432 6777888 455433332221 133 678899996 44444 45799998 666 5
Q ss_pred EEEeeecCCcc--------------ccccceEEEcCCCcEE-EEcCCCCCCCcceeee------------ee---cc--C
Q 023085 64 ENFLSYVNGSK--------------LRFANDVVEASDGSLY-FTVSSSKYLPHEYCLD------------IL---EG--K 111 (287)
Q Consensus 64 ~~~~~~~~~~~--------------~~~~~~l~~d~~g~l~-v~~~~~~~~~~~~~~~------------~~---~~--~ 111 (287)
..+........ +..+.++++.+||+.. ++.... -....|... .. .+ .
T Consensus 147 ~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 225 (723)
T 1xfd_A 147 IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND-SRVPIMELPTYTGSIYPTVKPYHYPKAGSEN 225 (723)
T ss_dssp EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC-TTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC-CccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence 55533211000 1133678999999743 331110 001111100 00 00 1
Q ss_pred CCceEEEEeCCCCee-EEeecc------ccccceEEEccCCCEEEEEeCC---CCEEEEEEecCCCCcceeEEeccCCCC
Q 023085 112 PHGQLLKYDPSSNIT-TLVADG------FYFANGVALSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLPGA 181 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~-~~~~~~------~~~~~~i~~~~~~~~l~v~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
....|+.+|..+++. ..+... ......++|+|||+.++..... ...|+.+|+++++.. ........+.
T Consensus 226 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~ 303 (723)
T 1xfd_A 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT--KKHEDESEAW 303 (723)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE--EEEEEECSSC
T ss_pred CeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce--EEEEeccCCE
Confidence 123688888876663 333321 2233568899999866544322 235778887543221 1111111122
Q ss_pred ----CcceeeCCCCC-EEEE
Q 023085 182 ----PDNINLAPDGT-FWIA 196 (287)
Q Consensus 182 ----~~~i~~d~~G~-lwv~ 196 (287)
+..+++.+||+ |++.
T Consensus 304 ~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 304 LHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCCCCEECTTSCSEEEE
T ss_pred EeccCCCceEcCCCCeEEEE
Confidence 23688889986 5544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.8e-05 Score=66.12 Aligned_cols=128 Identities=4% Similarity=-0.128 Sum_probs=83.6
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC---------CCCEEEEEEecCCCCcceeEE-ecc-----CC
Q 023085 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES---------WKFRCRKYWLKGERKGKLETF-AEN-----LP 179 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~---------~~~~l~~~~~~~~~~~~~~~~-~~~-----~~ 179 (287)
.|..+|+.++++.........| +++++||++.+|+++. ..+.|..+|....+. ...+ ... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCccccccC
Confidence 7889999988866544444567 8999999999999983 356799999764322 1111 110 01
Q ss_pred CCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEE--ECCCCcEEEEEECCCCc
Q 023085 180 GAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH--VAEDGTIIRNLVDPTGQ 256 (287)
Q Consensus 180 ~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~g~~~~~~~~~~~~ 256 (287)
..|.++++++|| .+|++.... ...+.. +|+.. +..+..+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~---------------------------------~~~v~V~~iD~~t--v~~i~v~~~- 167 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGS---------------------------------SAAAGLSVPGASD--DQLTKSASC- 167 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSS---------------------------------SCEEEEEETTTEE--EEEEECSSC-
T ss_pred CCcceEEEcCCCCEEEEEccCC---------------------------------CCeEEEEEEchhh--ceEEECCCc-
Confidence 359999999999 588887531 124555 77655 455554332
Q ss_pred cccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 257 LMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 257 ~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
..+..++.++|++....+.+.++++
T Consensus 168 -----~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 168 -----FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp -----CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred -----eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 1234456677777776667776665
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00019 Score=66.34 Aligned_cols=150 Identities=15% Similarity=0.043 Sum_probs=85.9
Q ss_pred CCCc--EEEEeC-CCceEEEccC----C-cEEEeeecCCccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCC
Q 023085 42 KEGH--LIICDN-ANGLHKVSED----G-VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 42 ~dg~--l~v~~~-~~gi~~~~~~----g-~~~~~~~~~~~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
|||+ |.++.. ...|+.++.+ + ...+...........+..+++++||.. +++....+. ......
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~--------~~~~~~ 159 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG--------EGPSDV 159 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS--------SSTTCE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccC--------CCCCCc
Confidence 8885 454443 2468888843 6 555533211001234567889999964 443110000 000012
Q ss_pred CceEEEEeCCC------CeeEEee-ccccccceEEEccCCCEEEEEeCCC-------CEEEEEEec-CCCCcceeEEecc
Q 023085 113 HGQLLKYDPSS------NITTLVA-DGFYFANGVALSRDEDYVVVCESWK-------FRCRKYWLK-GERKGKLETFAEN 177 (287)
Q Consensus 113 ~~~v~~~~~~~------~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~-------~~l~~~~~~-~~~~~~~~~~~~~ 177 (287)
...|+.++..+ ++...+. ........++++|||+.|+++.... ..|+.++++ ++...+...+...
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 24799999887 6666555 4444556788999999888776432 479999987 3322233333322
Q ss_pred CCCCCcceeeCCCCCEEEEEec
Q 023085 178 LPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 178 ~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
....+..+++.+||++++.+..
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~ 261 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDR 261 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECT
T ss_pred CCceEcceEECCCCeEEEEECC
Confidence 2234566888999997776654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00062 Score=64.21 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=100.0
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEee--CCccccCeEECCC--CcEEEE-eCCCceEEEc-cCC-cEEEeeecC
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKE--GHLIIC-DNANGLHKVS-EDG-VENFLSYVN 71 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~--~~~~~~~i~~d~d--g~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~ 71 (287)
+++| .|..++.+|.|..|+ ++........ ...++..+++.++ +++.++ ...+.|..++ .++ ........
T Consensus 18 s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~- 96 (753)
T 3jro_A 18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA- 96 (753)
T ss_dssp CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-
T ss_pred CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-
Confidence 4566 466777899999998 3333332222 1223337888776 765554 4334577777 555 33333221
Q ss_pred CccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe---eEEeeccccccceEEEcc---
Q 023085 72 GSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFANGVALSR--- 143 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~i~~~~--- 143 (287)
.....+.++++.++ +.++++ +..++.|..+|..++. .............++++|
T Consensus 97 -~h~~~V~~v~~sp~~~~~~l~s-----------------gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 97 -VHSASVNSVQWAPHEYGPLLLV-----------------ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp -CCSSCEEEEEECCGGGCSEEEE-----------------EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred -CCCCCeEEEEECCCCCCCEEEE-----------------EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence 12246788899988 877665 2335677778776542 122222333456677887
Q ss_pred ----------CCCEEEEEeCCCCEEEEEEecCCCCc-ceeEEeccCCCCCcceeeCCC---CCEEEEEec
Q 023085 144 ----------DEDYVVVCESWKFRCRKYWLKGERKG-KLETFAENLPGAPDNINLAPD---GTFWIAIIK 199 (287)
Q Consensus 144 ----------~~~~l~v~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~---G~lwv~~~~ 199 (287)
+++.++.+. ..+.|..|++...... ........-.+....+++.++ |++.++...
T Consensus 159 ~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp --------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred ccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 466555554 4677999998643211 111111112234567888888 766555544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00011 Score=67.08 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=93.4
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCC----CceEEEc-cCC-cEEEeeecCCcccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNA----NGLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~----~gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
.+++....+.+..|+ +++.+.+..... . .++++|||+.++. ... ..|++++ .+| .+.+... ..
T Consensus 124 ~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~-----~~ 195 (582)
T 3o4h_A 124 VVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG-----EG 195 (582)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS-----SC
T ss_pred EEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC-----CC
Confidence 345544555566667 566555544433 5 7889999986663 222 2488888 677 6665322 12
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEE--------EccCCCEE
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA--------LSRDEDYV 148 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~l 148 (287)
.+..+++.+||+..++.. ......|+.+|.++++...+......+..++ ++|||. +
T Consensus 196 ~~~~~~~SpDG~~l~~~~---------------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~ 259 (582)
T 3o4h_A 196 SFSSASISPGMKVTAGLE---------------TAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR-L 259 (582)
T ss_dssp EEEEEEECTTSCEEEEEE---------------CSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSC-E
T ss_pred ccccceECCCCCEEEEcc---------------CCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCc-E
Confidence 357789999997555311 1122379999998777663222222233445 999995 6
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
+++....+.+..|++ +. ... ...+....++++ +|+++++..
T Consensus 260 ~~~~~~~g~~~l~~~-g~----~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 260 AVVARREGRSAVFID-GE----RVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp EEEEEETTEEEEEET-TE----EEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred EEEEEcCCcEEEEEE-CC----eec---cCCCceEEEEec-CCEEEEEEc
Confidence 666555677777776 21 111 111234456777 777665543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00017 Score=62.25 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=91.8
Q ss_pred ecCCeEEEEE--CCce---EEEEeeCCccccCeEECCCCcEEE-EeCCCceEEEc-cC---CcEEEeeecCCccccccce
Q 023085 11 TRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-ED---GVENFLSYVNGSKLRFAND 80 (287)
Q Consensus 11 ~~~g~i~~~~--~~~~---~~~~~~~~~~~~~i~~d~dg~l~v-~~~~~gi~~~~-~~---g~~~~~~~~~~~~~~~~~~ 80 (287)
+.++.|..|+ ++.. ........... .+++.+++++.+ +...+.|..++ .. +...+.... .....+.+
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~--~h~~~v~~ 118 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFN-DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS--NHSSSVKT 118 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEE-EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC--CSSSCCCE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceE-EEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc--CCccceEE
Confidence 4567788888 3321 11111222334 788999996544 44444577777 44 222221111 12246788
Q ss_pred EEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe------eEEe----eccccccceEEEccCCCEEE
Q 023085 81 VVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------TTLV----ADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 81 l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~----~~~~~~~~~i~~~~~~~~l~ 149 (287)
+++.++ +.++++. ...+.|..+|..+++ .... .........++++|++..++
T Consensus 119 ~~~~~~~~~~l~s~-----------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 181 (416)
T 2pm9_A 119 VKFNAKQDNVLASG-----------------GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF 181 (416)
T ss_dssp EEECSSSTTBEEEE-----------------CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred EEEcCCCCCEEEEE-----------------cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence 999987 6766652 234678878876554 1111 12233456789999844455
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEeccC-----CCCCcceeeCCCC-CEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~d~~G-~lwv~~~~ 199 (287)
++....+.|..|++...+ ....+.... ......+++.++| ++.++...
T Consensus 182 ~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp EEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred EEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 555567789999975431 111221111 2346678888887 45554443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0037 Score=58.22 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=27.0
Q ss_pred eEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEec
Q 023085 235 AHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL 276 (287)
Q Consensus 235 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~ 276 (287)
+.+..+|.+ |+.++.+..+.+. ...+... ..+|+.|++..
T Consensus 498 g~l~a~D~~tG~~lw~~~~~~~~-~~~p~~y-~~~G~~~v~~~ 538 (677)
T 1kb0_A 498 GRLVAYHAATGEKLWEAPTGTGV-VAAPSTY-MVDGRQYVSVA 538 (677)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEE
T ss_pred CcEEEEECCCCceeeeeeCCCCc-ccCCEEE-EeCCEEEEEEe
Confidence 688999964 9999999876543 2223322 36788888653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0016 Score=60.70 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=97.2
Q ss_pred cEEEEecCCeEEEEE-C-C-c----eE-EEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCc
Q 023085 6 VIYTATRDGWIKRLQ-D-G-T----WV-NWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~-~-~----~~-~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.|..++.++.|..|+ . . . .. .+........ .+++.++|++.++... +.|..++ .++ ...+..
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~----- 470 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG----- 470 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-EEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-----
Confidence 355667889898888 2 1 1 11 1222222334 7889999986665433 4577777 666 333321
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec----cccccceEEEccCCC-EE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD----GFYFANGVALSRDED-YV 148 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~-~l 148 (287)
....+.++++.+++...++. ..++.|..+|........+.. .......++++|++. .+
T Consensus 471 h~~~v~~~~~s~~~~~l~s~-----------------s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 471 HTKDVLSVAFSLDNRQIVSA-----------------SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp CSSCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred CCCCEEEEEEeCCCCEEEEE-----------------eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 12357889999998877752 234567777765333332221 122345678888762 24
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+++.+..+.|..||+...+. ...+. .-.+....++++++|++.++...
T Consensus 534 l~s~s~d~~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKL--RSTLA-GHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp EEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEeCCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEeCCCCEEEEEeC
Confidence 55555667899999754321 11221 12234567889999987766654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0015 Score=54.97 Aligned_cols=136 Identities=6% Similarity=0.055 Sum_probs=84.7
Q ss_pred cEEEEecCCeEEEEE--CCce-EEEEeeC-----CccccCeEECCC----CcEE-EEeCCCceEEEc-cCC--cEEEeee
Q 023085 6 VIYTATRDGWIKRLQ--DGTW-VNWKFID-----SQTLVGLTSTKE----GHLI-ICDNANGLHKVS-EDG--VENFLSY 69 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~-~~~~~~~-----~~~~~~i~~d~d----g~l~-v~~~~~gi~~~~-~~g--~~~~~~~ 69 (287)
.++++..++.|..|+ +++. ..+.... .... .+++.++ |+++ .+...+.|..++ .++ ...+..
T Consensus 36 ~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~- 113 (366)
T 3k26_A 36 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG- 113 (366)
T ss_dssp EEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-
T ss_pred eEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-
Confidence 366666777888888 3332 2332211 2233 6777777 5444 445444577788 556 333321
Q ss_pred cCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee----ccccccceEEEccC
Q 023085 70 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----DGFYFANGVALSRD 144 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~i~~~~~ 144 (287)
....+.++++.+ ++.++++. ..++.|..+|..+++..... ........++++|+
T Consensus 114 ----~~~~i~~~~~~~~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 114 ----HGNAINELKFHPRDPNLLLSV-----------------SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp ----CCSCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred ----CCCcEEEEEECCCCCCEEEEE-----------------eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 124678899998 78877752 23567888888777654443 23345678899999
Q ss_pred CCEEEEEeCCCCEEEEEEecC
Q 023085 145 EDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~~~ 165 (287)
++.++.+. ..+.|..|++..
T Consensus 173 ~~~l~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 173 GEKIMSCG-MDHSLKLWRINS 192 (366)
T ss_dssp SSEEEEEE-TTSCEEEEESCS
T ss_pred CCEEEEec-CCCCEEEEECCC
Confidence 98766665 457899999764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00092 Score=56.61 Aligned_cols=176 Identities=9% Similarity=0.080 Sum_probs=93.2
Q ss_pred CCCcEEEEe-cCCeEEEEE-CCceEEEEeeCCccccCeEECC----CC----cEEEEeCC---CceEE--Ec-cCC-cEE
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTK----EG----HLIICDNA---NGLHK--VS-EDG-VEN 65 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~----dg----~l~v~~~~---~gi~~--~~-~~g-~~~ 65 (287)
+...++++| ..++|+.|+ +|+....... +.++ ++.+-+ .| .+++++.. +.|.. ++ .++ ++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSLDGKMLHSYNT-GKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGGCEEEEEETTTEEEEEETTSCEEEEECC-SCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CCccEEEEEcCCCCEEEEcCCCcEEEEccC-CCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 445667777 678999999 8877665432 3333 333322 12 13455543 33444 45 344 444
Q ss_pred Eeee--cCCccccccceEEE--cCC-Cc--EEEEcCCCCCCCcceeeeeeccCCCceEEE--EeC-CCCeeE----Eeec
Q 023085 66 FLSY--VNGSKLRFANDVVE--ASD-GS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLK--YDP-SSNITT----LVAD 131 (287)
Q Consensus 66 ~~~~--~~~~~~~~~~~l~~--d~~-g~--l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~----~~~~ 131 (287)
+... ..+..+..|.+++. ++. |. +|+++ ..+.+.. +.. ..+.+. +-..
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~------------------k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG------------------KEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC------------------SSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC------------------CCCeEEEEEEEeCCCCcccceEEEEec
Confidence 4211 00122357888877 664 54 55543 2234433 321 223221 1122
Q ss_pred cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEe----ccCCCCCcceeeC--CCC--CEEEEEec
Q 023085 132 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA----ENLPGAPDNINLA--PDG--TFWIAIIK 199 (287)
Q Consensus 132 ~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~d--~~G--~lwv~~~~ 199 (287)
....+.++++++....||+++.. ..||+|+.+...-.+...+. ..+...+.||++. ++| .|++++..
T Consensus 178 lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 178 MNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp CSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred CCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 23578899999988899999986 56999996532111111111 1122357889884 444 46666654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0034 Score=58.61 Aligned_cols=182 Identities=9% Similarity=0.068 Sum_probs=94.2
Q ss_pred CCCCc-EEEEe-cCC----eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCc----------------eE
Q 023085 2 DKNGV-IYTAT-RDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG----------------LH 56 (287)
Q Consensus 2 d~~G~-l~~~~-~~g----~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~g----------------i~ 56 (287)
.+||. |.++. ..| .|+.++ +++............ +++..+||+ |+++..... |+
T Consensus 133 SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (710)
T 2xdw_A 133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211 (710)
T ss_dssp CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence 35674 44444 233 677788 555544322222223 789999995 666643333 77
Q ss_pred EEc-cCC-cE-EEeeecCCccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC------C--
Q 023085 57 KVS-EDG-VE-NFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS------N-- 124 (287)
Q Consensus 57 ~~~-~~g-~~-~~~~~~~~~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~-- 124 (287)
+.+ .++ .+ .+...... ......++.++++|.. .++... .......|+.+|..+ +
T Consensus 212 ~~~l~t~~~~~~~v~~~~~-~~~~~~~~~~SpDg~~l~~~~~~-------------~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPD-EPKWMGGAELSDDGRYVLLSIRE-------------GCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp EEETTSCGGGCEEEECCTT-CTTCEEEEEECTTSCEEEEEEEC-------------SSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred EEECCCCcccceEEeccCC-CCeEEEEEEEcCCCCEEEEEEEc-------------cCCCccEEEEEECcccccccCCcc
Confidence 777 444 22 22211111 1123457788999863 332110 001145788888764 3
Q ss_pred eeEEeeccccccceEEEccCCCEEEEEeCC---CCEEEEEEecCCCCcceeEEeccCC-CCCcceeeCCCCCEEEEEec
Q 023085 125 ITTLVADGFYFANGVALSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+..+...... ....++++|+.+|+.... ..+|+.++++++.....+.+..... ....++++.+++.++++...
T Consensus 278 ~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 278 KWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 34444332222 222478899988887653 2479999976543222233332211 12344566556667766654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0043 Score=52.93 Aligned_cols=218 Identities=9% Similarity=-0.014 Sum_probs=116.6
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECC---CCcE-EEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK---EGHL-IICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~---dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
.|..++.+|.|..|+ +++............ .+.+.+ ++.+ .++...+.|..++ .++ ...+.. ...
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG-----HRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-----CCS
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-----CCC
Confidence 466677889999999 444433333333333 555655 4434 4445445688888 666 444321 123
Q ss_pred ccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEe---------------eccccccce
Q 023085 77 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLV---------------ADGFYFANG 138 (287)
Q Consensus 77 ~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~---------------~~~~~~~~~ 138 (287)
.+.++++.+++. ++++. ...+.|..+|..++. +..+ .........
T Consensus 188 ~v~~~~~~~~~~~ll~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 188 EILAVSWSPRYDYILATA-----------------SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp CEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred cEEEEEECCCCCcEEEEE-----------------cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 567889998886 55541 234567777765432 1111 011223467
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcce-e-EEecc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHH
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKL-E-TFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK 215 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~-~-~~~~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~ 215 (287)
++++|+++.++.+.. .+.|..|++...+.... . ..... ..........+..+.+.++...
T Consensus 251 ~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 313 (408)
T 4a11_B 251 LCFTSDGLHLLTVGT-DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG---------------- 313 (408)
T ss_dssp EEECTTSSEEEEEET-TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET----------------
T ss_pred EEEcCCCCEEEEecC-CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC----------------
Confidence 889999987776654 56799999764321110 0 00000 0111111222334455555443
Q ss_pred HHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 216 HVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|..++. .++.+..+.... ..+.++... ++++.+++-..+.|.++++
T Consensus 314 -------------------~~i~v~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 314 -------------------STIAVYTVYSGEQITMLKGHY----KTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp -------------------TEEEEEETTTCCEEEEECCCS----SCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred -------------------CEEEEEECcCCcceeeeccCC----CeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 46777774 466666665433 245666665 4454444445566777665
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.006 Score=52.94 Aligned_cols=110 Identities=7% Similarity=0.011 Sum_probs=68.0
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC---cEEEeee--cCCccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG---VENFLSY--VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g---~~~~~~~--~~~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+++.++|+++++...+.|..++ ..+ ...+... ........+..+++++++ .++++.
T Consensus 182 ~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~---------------- 245 (447)
T 3dw8_B 182 SISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS---------------- 245 (447)
T ss_dssp EEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE----------------
T ss_pred EEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE----------------
Confidence 78899999877766434566677 422 2222100 011122357889999998 777752
Q ss_pred cCCCceEEEEeCCCCee-----EEeecccc------------ccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 110 GKPHGQLLKYDPSSNIT-----TLVADGFY------------FANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~-----~~~~~~~~------------~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
...+.|..+|..+++. ..+..... ....++++|+++.|..+.. +.|..||+..
T Consensus 246 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~ 315 (447)
T 3dw8_B 246 -SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM 315 (447)
T ss_dssp -ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC
T ss_pred -eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC
Confidence 2356788888776553 33322221 4577899999997666654 7899999753
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0083 Score=54.96 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=28.8
Q ss_pred ceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCC
Q 023085 234 GAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 278 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 278 (287)
.+.|..+|.+ |+.++.+..+.+. ...+... ..+|++||+...+
T Consensus 493 dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y-~~~G~qyv~~~~G 536 (599)
T 1w6s_A 493 DGYLKARDSDTGDLLWKFKIPSGA-IGYPMTY-THKGTQYVAIYYG 536 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEeeCCCCc-EeccEEE-EeCCEEEEEEEcc
Confidence 3688899964 9999999876553 2223222 4688988876543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00016 Score=61.67 Aligned_cols=145 Identities=11% Similarity=0.034 Sum_probs=78.8
Q ss_pred ccCeEECCCCcEEEEe-CCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 35 LVGLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~-~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
+..+++.++|++.++. ..+.|..++ .++ ....... . .....+.++++.+++.++++. .
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~-~h~~~v~~~~~s~~~~~l~s~-----------------s 74 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-S-DHDKIVTCVDWAPKSNRIVTC-----------------S 74 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-C-CCSSCEEEEEECTTTCCEEEE-----------------E
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-e-cCCceEEEEEEeCCCCEEEEE-----------------e
Confidence 3389999999866654 333466666 444 2332211 1 122467889999998766642 2
Q ss_pred CCceEEEEeCCCCe----eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCC-cceeEEeccCCCCCccee
Q 023085 112 PHGQLLKYDPSSNI----TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNIN 186 (287)
Q Consensus 112 ~~~~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 186 (287)
.++.|..++..+++ ...+.........++++|+++.++.+.. .+.|..|++...+. .....+..........++
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-ARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-SSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-CCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 34567777766554 2222333345567889999987766654 56788888764321 112222211233466788
Q ss_pred eCCCCCEEEEEec
Q 023085 187 LAPDGTFWIAIIK 199 (287)
Q Consensus 187 ~d~~G~lwv~~~~ 199 (287)
+.++|++.++...
T Consensus 154 ~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 154 WHPNNVLLAAGCA 166 (377)
T ss_dssp ECTTSSEEEEEES
T ss_pred EcCCCCEEEEEeC
Confidence 8888875555443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0078 Score=54.87 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=38.0
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC-----ccccCeEECCCCcEEEEeC------CCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----QTLVGLTSTKEGHLIICDN------ANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-----~~~~~i~~d~dg~l~v~~~------~~gi~~~~-~~g 62 (287)
+|.||+++.++.|+.+| +|+......... ......++. ++.+|++.. ...|+.+| .+|
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG 186 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCC
Confidence 57899999999999999 676643333222 111122232 678999875 34689999 777
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0023 Score=54.07 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=73.5
Q ss_pred CeEECCCCcEEEEe-CCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~-~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.+++.++|++.++. ..+.|..++ ..+ ........ + ....+.++++.++ +.++++. .
T Consensus 16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~l~s~-----------------~ 76 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-G-HEGPVWRVDWAHPKFGTILASC-----------------S 76 (379)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-C-CSSCEEEEEECCGGGCSEEEEE-----------------E
T ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-C-CCCcEEEEEeCCCCCCCEEEEe-----------------c
Confidence 78899999765554 334466666 433 22221111 1 1235678888755 7776652 2
Q ss_pred CCceEEEEeCCCCeeEE---eeccccccceEEEccC--CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 112 PHGQLLKYDPSSNITTL---VADGFYFANGVALSRD--EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~---~~~~~~~~~~i~~~~~--~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
.++.|..+|..+++... +.........++++|+ ++.++++. ..+.|..|++..........+. ........++
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~ 154 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKENGTTSPIIID-AHAIGVNSAS 154 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEE
T ss_pred cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec-CCCcEEEEecCCCCceeeEEec-CCCCceEEEE
Confidence 34566666666564222 2223345677889998 77666665 4678999998653222221221 1222345666
Q ss_pred eCC
Q 023085 187 LAP 189 (287)
Q Consensus 187 ~d~ 189 (287)
+.+
T Consensus 155 ~~~ 157 (379)
T 3jrp_A 155 WAP 157 (379)
T ss_dssp ECC
T ss_pred EcC
Confidence 776
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.005 Score=50.93 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=85.2
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCc--eEEE--EeeCCccccCeEECC--CCcEEEE-eCCCceEEEc-cCC-c------
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGT--WVNW--KFIDSQTLVGLTSTK--EGHLIIC-DNANGLHKVS-EDG-V------ 63 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~--~~~~--~~~~~~~~~~i~~d~--dg~l~v~-~~~~gi~~~~-~~g-~------ 63 (287)
+++|. |..++.+|.|..|+ ++. .+.. ......++..+++.+ +++++++ ...+.|..++ ..+ .
T Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 99 (351)
T 3f3f_A 20 DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRR 99 (351)
T ss_dssp CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCS
T ss_pred cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccC
Confidence 45674 66677889999998 221 1111 112222332788887 5765554 4334466666 443 1
Q ss_pred -EEEeeecCCccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-ee---------
Q 023085 64 -ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VA--------- 130 (287)
Q Consensus 64 -~~~~~~~~~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~--------- 130 (287)
..+.... .....+.++++.++ +.++++. ...+.|..+|..+++... +.
T Consensus 100 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~-----------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 100 WNKLCTLN--DSKGSLYSVKFAPAHLGLKLACL-----------------GNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp EEEEEEEC--CCSSCEEEEEECCGGGCSEEEEE-----------------ETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred cceeeeec--ccCCceeEEEEcCCCCCcEEEEe-----------------cCCCcEEEecCCChHHhccccccccccccc
Confidence 2222211 12245778889988 8766642 235677777765443211 00
Q ss_pred ----ccccccceEEEccC---CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 131 ----DGFYFANGVALSRD---EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 131 ----~~~~~~~~i~~~~~---~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
........+.++|+ ++.+.++.. .+.+..++...........+. .-......+++.++|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~ 226 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSAL-EQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSI 226 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEET-TEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecC-CCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCC
Confidence 11223456778886 775666553 344433332222111111111 112235567777776
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00021 Score=61.92 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=96.4
Q ss_pred CCcEEEEecCC----eEEEEE-CC-ceEEEEeeC---Cc----------cccCeEECC---CCcEEEEeCCCceEEEccC
Q 023085 4 NGVIYTATRDG----WIKRLQ-DG-TWVNWKFID---SQ----------TLVGLTSTK---EGHLIICDNANGLHKVSED 61 (287)
Q Consensus 4 ~G~l~~~~~~g----~i~~~~-~~-~~~~~~~~~---~~----------~~~~i~~d~---dg~l~v~~~~~gi~~~~~~ 61 (287)
++.||+++..| +|++.. .| .++...... .. .+..+++++ .+.||++....+|++.+..
T Consensus 67 ~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg 146 (394)
T 3b7f_A 67 PERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH 146 (394)
T ss_dssp TTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST
T ss_pred CCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC
Confidence 68999999777 899887 33 444443211 00 111467775 6789998766789988755
Q ss_pred C--cEEEeeecC--------------CccccccceEEEcC--CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC
Q 023085 62 G--VENFLSYVN--------------GSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 123 (287)
Q Consensus 62 g--~~~~~~~~~--------------~~~~~~~~~l~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 123 (287)
| ++.+..... +.....+..|++++ .+.+|++. ..++|++.+...
T Consensus 147 G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~------------------~~ggl~~s~DgG 208 (394)
T 3b7f_A 147 GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGM------------------SSGGVFESTDAG 208 (394)
T ss_dssp TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEE------------------ETBEEEEESSTT
T ss_pred CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEE------------------CCCCEEEECCCC
Confidence 5 555432110 01112456788886 46899952 234688776553
Q ss_pred CeeEEeeccc-------------cccceEEEccC-CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCC----CCcce
Q 023085 124 NITTLVADGF-------------YFANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG----APDNI 185 (287)
Q Consensus 124 ~~~~~~~~~~-------------~~~~~i~~~~~-~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~i 185 (287)
..++.+.... .....++++++ .+.||+.. ...|++.+..+.+ .+.+....+. ....+
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~t---W~~~~~~l~~~~~~~~~~i 283 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREGV---WKRIGDAMPREVGDIGFPI 283 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTTE---EECGGGGSCTTTCSCEEEE
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCCc---ceECCCCCCCCCccceEEE
Confidence 4455443211 12356777775 35788876 3568777633321 1111111111 12346
Q ss_pred eeC--CCCCEEEEEe
Q 023085 186 NLA--PDGTFWIAII 198 (287)
Q Consensus 186 ~~d--~~G~lwv~~~ 198 (287)
++| ..+.||+++.
T Consensus 284 ~~~p~~~~~l~~~t~ 298 (394)
T 3b7f_A 284 VVHQRDPRTVWVFPM 298 (394)
T ss_dssp EECSSCTTCEEEEEC
T ss_pred EECCCCCCEEEEEec
Confidence 777 4578999874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00078 Score=56.30 Aligned_cols=215 Identities=14% Similarity=0.053 Sum_probs=115.0
Q ss_pred CCCc--EEEEecCCeEEEEE---CCceEEEEe--eCCccccCeEECCCCcE-EEEeCCCceEEEc-cC--C-cEE--Eee
Q 023085 3 KNGV--IYTATRDGWIKRLQ---DGTWVNWKF--IDSQTLVGLTSTKEGHL-IICDNANGLHKVS-ED--G-VEN--FLS 68 (287)
Q Consensus 3 ~~G~--l~~~~~~g~i~~~~---~~~~~~~~~--~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~--g-~~~--~~~ 68 (287)
++|. |+.++.+|.|..|+ .++...+.. ...... .+++.+ +++ +.+...+.|..++ .+ + ... ...
T Consensus 66 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred CCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe
Confidence 3455 77777888888887 233333332 222334 778888 654 4445444577776 43 1 100 000
Q ss_pred ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-Ce--eEEee-ccccccceEEEcc-
Q 023085 69 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI--TTLVA-DGFYFANGVALSR- 143 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~-~~~~~~~~i~~~~- 143 (287)
...-.....+.++++.+++ ++++ ...+.|..++..+ +. ..... ........++++|
T Consensus 144 ~~~~~~~~~v~~~~~~~~~-l~~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 144 SNNTKVKNKIFTMDTNSSR-LIVG------------------MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp SSSSSSCCCEEEEEECSSE-EEEE------------------ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred eeEEeeCCceEEEEecCCc-EEEE------------------eCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence 0000122456778888776 5553 2346788888765 32 22222 2233457788999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCC--C--CcceeEEeccC--------CCCCcceeeCCCCCEEEEEeccchhHHHHhhcc
Q 023085 144 DEDYVVVCESWKFRCRKYWLKGE--R--KGKLETFAENL--------PGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 211 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~~--~--~~~~~~~~~~~--------~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~ 211 (287)
+++.++++. ..+.+..++.+.. . ......+.... .+....+++.++|++.++...
T Consensus 205 ~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------------ 271 (342)
T 1yfq_A 205 EQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------------ 271 (342)
T ss_dssp GGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------------
T ss_pred CCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------------
Confidence 898666665 4677888877543 0 11122222111 114567888888875554443
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECC-CCccccceEEEEEeCCEEEEEecC
Q 023085 212 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLT 277 (287)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~g~l~i~~~~ 277 (287)
.+.|..++.+ ++.+..+... .+ .+..+..++..|..++..
T Consensus 272 ----------------------dg~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~~~~~l~s~s~D 313 (342)
T 1yfq_A 272 ----------------------DGIISCWNLQTRKKIKNFAKFNED----SVVKIACSDNILCLATSD 313 (342)
T ss_dssp ----------------------TSCEEEEETTTTEEEEECCCCSSS----EEEEEEECSSEEEEEEEC
T ss_pred ----------------------CceEEEEcCccHhHhhhhhcccCC----CceEecCCCCeEEEEecC
Confidence 2467777765 5556665543 22 345555334555555543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0048 Score=52.54 Aligned_cols=189 Identities=13% Similarity=0.068 Sum_probs=90.2
Q ss_pred CCCCc-EEEEe-c--CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCC
Q 023085 2 DKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~-l~~~~-~--~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
.+||. |.+.. . ...|+.++ +++..............+.+.+||+ |+++.....|++++ .++ ...+.....+
T Consensus 44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 123 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE 123 (396)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc
Confidence 46774 44543 2 23677777 4554444333223231377899996 54555445699998 556 5544332111
Q ss_pred ccccccc--eEEEcCCC---cEEEEcCCCCCCCcceeeeee---ccCCCceEEEEeCCCCeeEEeeccccccceEEEcc-
Q 023085 73 SKLRFAN--DVVEASDG---SLYFTVSSSKYLPHEYCLDIL---EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR- 143 (287)
Q Consensus 73 ~~~~~~~--~l~~d~~g---~l~v~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~- 143 (287)
..+. .+++.... .+|..... +.......... .......|+.+|..+++...+.........+.++|
T Consensus 124 ---~~~~g~~l~~~~~~~~~~~~~~~~~--~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~ 198 (396)
T 3c5m_A 124 ---WKGYGTWVANSDCTKLVGIEILKRD--WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPF 198 (396)
T ss_dssp ---EEEEEEEEECTTSSEEEEEEEEGGG--CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred ---cCCCCCEEEeccCCccccccccccc--cCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCC
Confidence 0011 11111000 01110000 00000000000 01234579999988777666554334456678899
Q ss_pred CCCEEEEEeCCC-----CEEEEEEecCCCCcceeEEeccC-CCCCcceeeCCCCC-EEEEEe
Q 023085 144 DEDYVVVCESWK-----FRCRKYWLKGERKGKLETFAENL-PGAPDNINLAPDGT-FWIAII 198 (287)
Q Consensus 144 ~~~~l~v~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~-lwv~~~ 198 (287)
+++.+++..... ..|+.++.++.. ........ ...+..+++.++|+ |+++..
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (396)
T 3c5m_A 199 DDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPDGSAMAYVSY 257 (396)
T ss_dssp EEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCCCCEEEEEec
Confidence 777565554332 468898875432 11111111 11244568889986 555544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0017 Score=55.47 Aligned_cols=173 Identities=12% Similarity=0.115 Sum_probs=93.6
Q ss_pred CC-cEEEEecCCeEEEEE--CCceEEEEe-------------eCCccccCeEECC-CCcEEE-EeCCCceEEEc-cCC-c
Q 023085 4 NG-VIYTATRDGWIKRLQ--DGTWVNWKF-------------IDSQTLVGLTSTK-EGHLII-CDNANGLHKVS-EDG-V 63 (287)
Q Consensus 4 ~G-~l~~~~~~g~i~~~~--~~~~~~~~~-------------~~~~~~~~i~~d~-dg~l~v-~~~~~gi~~~~-~~g-~ 63 (287)
+| .|..++.+|.|..|+ ++....... ....++..+++.+ ++++++ +...+.|..++ .++ .
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 56 466677889999998 332211111 0112222778888 555444 44444577777 555 3
Q ss_pred EEEeeecCCccccccceEEEcC---CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE-EeeccccccceE
Q 023085 64 ENFLSYVNGSKLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGV 139 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~---~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~i 139 (287)
...... ...+..+.+.+ ++.++++ +...+.|..+|..+++.. .+.........+
T Consensus 135 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 135 ADVFNF-----EETVYSHHMSPVSTKHCLVAV-----------------GTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEEC-----SSCEEEEEECSSCSSCCEEEE-----------------EESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred ceeccC-----CCceeeeEeecCCCCCcEEEE-----------------EcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 322221 12344555555 3345553 223467888887665533 233333455778
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEe--------------ccCCCCCcceeeCCCCCEEEEEec
Q 023085 140 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA--------------ENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 140 ~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+++|+++.++++....+.|..|++...... ...+. ....+....+++.++|++.++...
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 999999865555556678999997542100 01100 011123566888888875555543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0023 Score=53.91 Aligned_cols=169 Identities=10% Similarity=0.027 Sum_probs=93.6
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeE-------ECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLT-------STKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~-------~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.|..|+.+|.|..|+ +++....... .... .+. -..|+.+.+-+....+..++ .++ +..+...
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~-~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~---- 123 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTITT-PNPR-TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD---- 123 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEE-ECCC-TTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC----
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEec-CCce-eeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecC----
Confidence 456667899999998 4443322211 1111 222 23455544444444444455 333 2222111
Q ss_pred cccccceEEEcC--CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEE
Q 023085 74 KLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 74 ~~~~~~~l~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~ 149 (287)
....+..+++.+ ++.++++. ..++.|..+|..+++..... ........++++|+++.+.
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~-----------------s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWA-----------------DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEE-----------------ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCEEEEE-----------------eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEE
Confidence 113577888998 88877752 23567888888767654332 1222457789999998554
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+ ...+.|..||+...+.. ...+...-.+....+++.++|++.++...
T Consensus 187 sg-~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 187 LY-SPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVECD 234 (343)
T ss_dssp EE-CTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred EE-cCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 44 45678999998643221 01222111234677889999976666554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.005 Score=53.46 Aligned_cols=228 Identities=8% Similarity=0.042 Sum_probs=120.3
Q ss_pred CC-cEEEEecCCeEEEEE--C---Cc-e--EEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-c---CC-cEEEee
Q 023085 4 NG-VIYTATRDGWIKRLQ--D---GT-W--VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-E---DG-VENFLS 68 (287)
Q Consensus 4 ~G-~l~~~~~~g~i~~~~--~---~~-~--~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~---~g-~~~~~~ 68 (287)
+| .|..++.+|.|..|+ + +. . ........... .+++.++++++++ ...+.|..++ . ++ ......
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 153 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVT-QITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN 153 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence 55 466666889999998 3 32 1 11112223334 8899998875554 4333454444 2 33 222111
Q ss_pred ecC------Cc--cccccceEE--EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-ec--cccc
Q 023085 69 YVN------GS--KLRFANDVV--EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-AD--GFYF 135 (287)
Q Consensus 69 ~~~------~~--~~~~~~~l~--~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~--~~~~ 135 (287)
... .. ....+..+. ..+++.++++ +...+.|..+|..+++.... .. ....
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~d~~i~iwd~~~~~~~~~~~~~~h~~~ 216 (437)
T 3gre_A 154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA-----------------LTNLSRVIIFDIRTLERLQIIENSPRHGA 216 (437)
T ss_dssp EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE-----------------EETTSEEEEEETTTCCEEEEEECCGGGCC
T ss_pred cceeEEEEccCcccccCceEEEEEEcCCCCEEEE-----------------EeCCCeEEEEeCCCCeeeEEEccCCCCCc
Confidence 000 00 111223333 3355665554 23457888899876664433 22 2345
Q ss_pred cceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee----eCCCCCEEEEEeccchhHHHHhhcc
Q 023085 136 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN----LAPDGTFWIAIIKLDARRMKILNSS 211 (287)
Q Consensus 136 ~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~d~~G~lwv~~~~~~~~~~~~~~~~ 211 (287)
...++++|+++.|+.+. ..+.|..||+...+ ....+..........++ +.+++.+.++...
T Consensus 217 v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~------------ 281 (437)
T 3gre_A 217 VSSICIDEECCVLILGT-TRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS------------ 281 (437)
T ss_dssp EEEEEECTTSCEEEEEE-TTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST------------
T ss_pred eEEEEECCCCCEEEEEc-CCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCccEEEEEcC------------
Confidence 67889999998666665 45779999975321 11111101111233453 3345655544433
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCc----------------------cccceEEEEEeC
Q 023085 212 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQ----------------------LMSFVTSGLQVD 268 (287)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 268 (287)
.+.|..++.+ ++.+..+...... ....+.++...+
T Consensus 282 ----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~ 339 (437)
T 3gre_A 282 ----------------------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN 339 (437)
T ss_dssp ----------------------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET
T ss_pred ----------------------CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECC
Confidence 3466777754 6666666532211 122356666667
Q ss_pred CEEEEEecCCCeEEEEeC
Q 023085 269 NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 269 g~l~i~~~~~~~i~~~~~ 286 (287)
+++.+++-..+.|.++++
T Consensus 340 ~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSL 357 (437)
T ss_dssp TEEEEEEGGGTEEEEEET
T ss_pred ceEEEecCCCCeEEEEEC
Confidence 776666666778888876
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0043 Score=54.09 Aligned_cols=193 Identities=5% Similarity=-0.048 Sum_probs=110.5
Q ss_pred CccccCeEECCC-CcEEEEeCC-CceEEEc-cC----------C--cEEEeeecCCccccccceEEEcCCCc-EEEEcCC
Q 023085 32 SQTLVGLTSTKE-GHLIICDNA-NGLHKVS-ED----------G--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSS 95 (287)
Q Consensus 32 ~~~~~~i~~d~d-g~l~v~~~~-~gi~~~~-~~----------g--~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~ 95 (287)
..+. .+++.++ ++++++... +.|..++ .. . ...+.. ....+.++++.+++. ++++.
T Consensus 129 ~~v~-~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~-- 200 (430)
T 2xyi_A 129 GEVN-RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-----HQKEGYGLSWNPNLNGYLLSA-- 200 (430)
T ss_dssp SCCS-EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-----CSSCCCCEEECTTSTTEEEEE--
T ss_pred CcEE-EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-----CCCCeEEEEeCCCCCCeEEEE--
Confidence 3445 7888887 455554333 4477777 43 2 222211 123568899998876 66642
Q ss_pred CCCCCcceeeeeeccCCCceEEEEeCCCCee--------EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC
Q 023085 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--------TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER 167 (287)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~ 167 (287)
...+.|..++..++.. ..+.........++++|++..++++....+.|..|++....
T Consensus 201 ---------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 201 ---------------SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp ---------------CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred ---------------eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 2346677777654211 11222234467788999555566666677899999986432
Q ss_pred Ccc-eeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--
Q 023085 168 KGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-- 243 (287)
Q Consensus 168 ~~~-~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 243 (287)
... ...+. .....+..+++.+++. ++++... .+.|..++.+
T Consensus 266 ~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~----------------------------------dg~v~vwd~~~~ 310 (430)
T 2xyi_A 266 TSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSA----------------------------------DKTVALWDLRNL 310 (430)
T ss_dssp SSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEET----------------------------------TSEEEEEETTCT
T ss_pred CCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeC----------------------------------CCeEEEEeCCCC
Confidence 111 11221 2223467889999885 5555443 2466666654
Q ss_pred CcEEEEEECCCCccccceEEEEEe-C-CEEEEEecCCCeEEEEeC
Q 023085 244 GTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 244 g~~~~~~~~~~~~~~~~~~~~~~~-~-g~l~i~~~~~~~i~~~~~ 286 (287)
+..+..+.... ..+..+... + ..+++++...+.|.++++
T Consensus 311 ~~~~~~~~~h~----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 311 KLKLHSFESHK----DEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp TSCSEEEECCS----SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CCCeEEeecCC----CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 34455555322 246666664 3 356666666678888776
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.003 Score=57.95 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=67.6
Q ss_pred CeEECCCCc--EEEEeCCCceEEEc-cCC-c-EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGH--LIICDNANGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~--l~v~~~~~gi~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.+++.|++. |..+...+.+..++ +.+ . ..+. + ....++++++.++|.++++. .
T Consensus 152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~----~-H~~~V~~v~fspdg~~las~-----------------s 209 (611)
T 1nr0_A 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG----E-HTKFVHSVRYNPDGSLFAST-----------------G 209 (611)
T ss_dssp EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC----C-CSSCEEEEEECTTSSEEEEE-----------------E
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec----c-ccCceEEEEECCCCCEEEEE-----------------E
Confidence 778889885 34444444566666 555 2 2221 1 22467899999999988752 2
Q ss_pred CCceEEEEeCCCCeeEEee--------ccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 112 PHGQLLKYDPSSNITTLVA--------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.++.|..++..+++..... ........++|+|+++.|..+. ..+.|..||+..
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s-~D~~v~lWd~~~ 270 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVAT 270 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT
T ss_pred CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Confidence 3567888887666543322 1233456789999998665554 567888998754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00036 Score=58.66 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=83.0
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECC---CCcE-EEEeCCCceEEEc-cCC--cEEEeeecCC
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK---EGHL-IICDNANGLHKVS-EDG--VENFLSYVNG 72 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~---dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~~ 72 (287)
+++ .|..++.++.|..|+ .++............ .+.+.+ ++++ +++...+.|..++ +++ ...+......
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 256 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVC-SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK 256 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred CCCCEEEEEccCCeEEEEECccCceeeecCCCCceE-EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccC
Confidence 456 455666889999999 444433333333444 888998 7764 4555445577777 444 3332211001
Q ss_pred ccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--------------------eEEeec
Q 023085 73 SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--------------------TTLVAD 131 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~~~~~ 131 (287)
.....+..+++.+++. ++++. ..++.|..++...+. +..+..
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~-----------------~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTA-----------------GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEE-----------------ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred CCcCCEEEEEECCCCCcEEEEE-----------------eCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 1224677888999887 55542 223455555433211 111222
Q ss_pred cccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 132 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 132 ~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.......++++|+++.|.++....+.|..|++..
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 2334567899999997776666678899998753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0068 Score=50.34 Aligned_cols=225 Identities=12% Similarity=0.076 Sum_probs=116.4
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEE-EeCCCceEEEccCC-cEEEeeecCCccc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLII-CDNANGLHKVSEDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v-~~~~~gi~~~~~~g-~~~~~~~~~~~~~ 75 (287)
.++|. |..++.++.|..++ ........... .... .....+++++.+ +...+.+..++..+ ....... . ...
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~-~-~~~ 171 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-E-SHS 171 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-S-SCS
T ss_pred CCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEEEe-c-ccc
Confidence 35564 55566778887777 22222222222 2223 456667775444 44334456666333 2221111 1 112
Q ss_pred cccceEEEcCCC--cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEe
Q 023085 76 RFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 76 ~~~~~l~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
..+..+++..++ .+.++. ...+.|..++..+++..... ........++++|+++.|+.+.
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~-----------------~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSC-----------------GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CcccceEEccCCCCcEEEEE-----------------cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 344555665543 444531 23456777887766654432 2334457789999998666554
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
..+.|..||+... .....+. .......+++.+++.+..++..
T Consensus 235 -~Dg~i~iwd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~~~~d--------------------------------- 276 (340)
T 4aow_A 235 -KDGQAMLWDLNEG--KHLYTLD--GGDIINALCFSPNRYWLCAATG--------------------------------- 276 (340)
T ss_dssp -TTCEEEEEETTTT--EEEEEEE--CSSCEEEEEECSSSSEEEEEET---------------------------------
T ss_pred -CCCeEEEEEeccC--ceeeeec--CCceEEeeecCCCCceeeccCC---------------------------------
Confidence 4678889987542 1112221 1223456777778777666654
Q ss_pred CceEEEEECCCCc-EEEEEECCC-----CccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 233 GGAHLIHVAEDGT-IIRNLVDPT-----GQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 233 ~~~~v~~~~~~g~-~~~~~~~~~-----~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|..++.++. .+..+.... ......+.++... +++..+++-..+.|.++++
T Consensus 277 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 277 --PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp --TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred --CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 35666665543 333332110 0112346677665 5555455445567777765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0016 Score=59.06 Aligned_cols=202 Identities=11% Similarity=0.048 Sum_probs=112.1
Q ss_pred CC-cEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEc--CCC-cEEEEcCCCCCCCcceeeeeeccCCCce
Q 023085 43 EG-HLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEA--SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQ 115 (287)
Q Consensus 43 dg-~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d--~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 115 (287)
|| .|||++.. ..|.++| .+. ...+.....+ ..|.++++. +++ .+|++.....-...............+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g---~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC---CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 77 48898765 4599998 554 3333222111 357788874 555 5777642210000000000000112356
Q ss_pred EEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--------------CEEEEEEecCC---------------
Q 023085 116 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--------------FRCRKYWLKGE--------------- 166 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--------------~~l~~~~~~~~--------------- 166 (287)
+-.+|.++.++..-......|.+++++|+|+++|+++... +.+..++....
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 8889998877554322223789999999999999999665 23444442100
Q ss_pred -----CC--cce-eEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEE
Q 023085 167 -----RK--GKL-ETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLI 238 (287)
Q Consensus 167 -----~~--~~~-~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (287)
.. .+. .... ..+..|.++.+++||+..+.+.... ..|.
T Consensus 257 ~VID~~~~~~~~~~~~I-pvg~~PhGv~~sPDGk~v~V~~~~s---------------------------------~~Vs 302 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLS---------------------------------PTVT 302 (595)
T ss_dssp EEEECSGGGCCSSEEEE-EEESSCCCEEECTTSSEEEEECTTS---------------------------------SBEE
T ss_pred EEEeCcccCCceeEEEE-ecCCCceEEEEcCCCCEEEEeCCCC---------------------------------CeEE
Confidence 00 011 1111 1223589999999997555554421 2344
Q ss_pred EECCCC-------------cEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 239 HVAEDG-------------TIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 239 ~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.++.+. ...... +-|+ .+..+.++ +|++|++..-.+.|.++++
T Consensus 303 Vid~~~~~~~~~~~l~~~~~v~~~v--~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 303 VLDVTRFDAVFYENADPRSAVVAEP--ELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEEGGGHHHHHHSCCCGGGGEEECC--BCCS---CEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred EEECcccccccccccCcccceEEEc--CCCC---CcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 443321 122222 2332 46777775 5799999999999999886
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=67.10 Aligned_cols=124 Identities=8% Similarity=-0.019 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCCc----cccCeEECCCCc-EEEEeC---------CCceEEEc-cCC-c-
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ----TLVGLTSTKEGH-LIICDN---------ANGLHKVS-EDG-V- 63 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~----~~~~i~~d~dg~-l~v~~~---------~~gi~~~~-~~g-~- 63 (287)
++|.+.+.+.++.|+.++ +++.......... .. .+++.|||+ |.++.. ...|+.++ .+| .
T Consensus 25 ~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 25 SGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp SSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc
Confidence 567666666788899999 5555554433221 34 788999997 444432 13577777 555 3
Q ss_pred --EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--------
Q 023085 64 --ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-------- 133 (287)
Q Consensus 64 --~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------- 133 (287)
..+. ..+..+++.+||+..+.. ..+.|+.++..+++...+....
T Consensus 104 ~~~~l~--------~~~~~~~~SPDG~~la~~------------------~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 104 RGNELP--------RPIQYLCWSPVGSKLAYV------------------YQNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp CSSCCC--------SSBCCEEECSSTTCEEEE------------------ETTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred cceecC--------cccccceECCCCCEEEEE------------------ECCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 2221 245678899999643321 2357888887766655443211
Q ss_pred -----------cccceEEEccCCCEEEEEeC
Q 023085 134 -----------YFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 134 -----------~~~~~i~~~~~~~~l~v~~~ 153 (287)
.....++|+|||+.|+++..
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEF 188 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEE
Confidence 11147899999998877653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0012 Score=64.69 Aligned_cols=134 Identities=9% Similarity=0.060 Sum_probs=81.1
Q ss_pred CeEEC-CCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTST-KEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d-~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
.++++ |||+ |.++. ...++.++ .++ ...+... ....+..+++. +|..++.. ..
T Consensus 300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~s-dg~~l~~~-----------------s~ 356 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEP----LRIRYVRRGGD-TKVAFIHG-----------------TR 356 (1045)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCC----SCEEEEEECSS-SEEEEEEE-----------------ET
T ss_pred eeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCC----CcceEEeeeEc-CCCeEEEE-----------------EC
Confidence 78889 9996 55444 45688887 555 4333111 11134566667 76533310 11
Q ss_pred CceEE-EEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 113 HGQLL-KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 113 ~~~v~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
...++ .++..+++...+.........++++|||+.|+++.. .+.|+.+++++++ .........+....+++.+||
T Consensus 357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~---~~~~~~~~~~~v~~~~~SpDG 432 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGK---PTVIERSREAMITDFTISDNS 432 (1045)
T ss_dssp TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTS
T ss_pred CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-CCeEEEEECCCCc---eEEeccCCCCCccceEECCCC
Confidence 45788 888876766555433345678899999998877764 5689999986432 222221222335778999999
Q ss_pred CEEEEE
Q 023085 192 TFWIAI 197 (287)
Q Consensus 192 ~lwv~~ 197 (287)
+..+..
T Consensus 433 ~~la~~ 438 (1045)
T 1k32_A 433 RFIAYG 438 (1045)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 844443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.4e-05 Score=64.02 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
.++.||+++.+|.|+.++ +|+....... .... ......+|+++++ .....|+.+| .+| +..+..........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 367899999999999999 6766433333 3223 3333456777776 3345688898 577 33332110000001
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
.| ++..++.+|++ ...+.|+.+|+++|+....... ......+|+++.+|+... .+
T Consensus 86 sp---~~~~~~~v~~g------------------~~dg~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~~-dg 140 (369)
T 2hz6_A 86 SP---CRSSDGILYMG------------------KKQDIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGRT-EY 140 (369)
T ss_dssp CS---CC-----CCCC------------------EEEEEEEEECCC-------------------------EEEEEE-EE
T ss_pred Cc---eEecCCEEEEE------------------eCCCEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEec-CC
Confidence 11 12234566652 2346799999888876543221 112334566777888753 46
Q ss_pred EEEEEEecCC
Q 023085 157 RCRKYWLKGE 166 (287)
Q Consensus 157 ~l~~~~~~~~ 166 (287)
.|+.+|..++
T Consensus 141 ~v~a~d~~tG 150 (369)
T 2hz6_A 141 TITMYDTKTR 150 (369)
T ss_dssp EEECCCSSSS
T ss_pred EEEEEECCCC
Confidence 7888887644
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0063 Score=52.12 Aligned_cols=168 Identities=14% Similarity=0.078 Sum_probs=99.4
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEe-e-----CCccccCeEECC-CCcEEEEeCC-CceEEEc-c-CC--cEEEeeecC
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKF-I-----DSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-E-DG--VENFLSYVN 71 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~-~-----~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~-~-~g--~~~~~~~~~ 71 (287)
.|..++.++.|..|+ +++...... . ..... .+.+.+ +++++++... +.|..+| + .+ ...+..
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--- 247 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--- 247 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---
Confidence 577888899999998 444332221 1 11123 556655 6666665433 4566677 4 33 333321
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc--------ccccceEEEcc
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--------FYFANGVALSR 143 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~i~~~~ 143 (287)
....++++++.++|..+++. ..++.|..+|..+++....... ......++|+|
T Consensus 248 --h~~~v~~v~~~p~~~~l~s~-----------------s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 248 --HEGDINSVKFFPDGQRFGTG-----------------SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp --CSSCCCEEEECTTSSEEEEE-----------------CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred --cCCCeEEEEEecCCCeEEEE-----------------cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 12467899999999887762 3356788888877764332211 12246789999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcceeEEe---ccCCCCCcceeeCCCCCEEEEEec
Q 023085 144 DEDYVVVCESWKFRCRKYWLKGERKGKLETFA---ENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+++.++.+. ..+.|..||....+ ....+. ..-.+....+++.++|.+.++...
T Consensus 309 ~g~~l~~g~-~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 309 SGRLLFAGY-SNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp SSSEEEEEC-TTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred CCCEEEEEE-CCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 999666654 56789999864321 111111 111234677889999986665543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0073 Score=50.83 Aligned_cols=172 Identities=12% Similarity=0.142 Sum_probs=91.3
Q ss_pred CCCcEEEEecCCeEEEEEC-C-ceEEEEeeC---CccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccc
Q 023085 3 KNGVIYTATRDGWIKRLQD-G-TWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~~-~-~~~~~~~~~---~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~ 75 (287)
.++.+|+....|.|++-.+ | .++...... ..+..++++++ +++|++....+|++-...| .+.+.... .. .
T Consensus 45 ~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~-~~-~ 121 (327)
T 2xbg_A 45 DRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIPLDP-KL-P 121 (327)
T ss_dssp SSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCEECCCCT-TC-S
T ss_pred CCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEECCCCCCceECcccc-CC-C
Confidence 4567887767777877663 3 344433221 22332677775 7888876444466543434 55542211 11 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-cccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+..++...++++|++. ..+.|++-.-....+..+.... .....++++++++ +|+...
T Consensus 122 ~~~~~i~~~~~~~~~~~~------------------~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~- 181 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT------------------NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVSS- 181 (327)
T ss_dssp SCEEEEEEEETTEEEEEE------------------TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEET-
T ss_pred CCeEEEEEECCCCEEEEe------------------CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEEC-
Confidence 235667777778888852 2345776543323344443221 2335677888776 454443
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+++-+..+.. ...............++++++|++|++...
T Consensus 182 ~G~~~~S~d~gG~--tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 224 (327)
T 2xbg_A 182 RGSFYSTWEPGQT--AWEPHNRTTSRRLHNMGFTPDGRLWMIVNG 224 (327)
T ss_dssp TSSEEEEECTTCS--SCEEEECCSSSCEEEEEECTTSCEEEEETT
T ss_pred CCcEEEEeCCCCC--ceeECCCCCCCccceeEECCCCCEEEEeCC
Confidence 3456665422121 111111112223456778889999988865
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00041 Score=61.53 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=66.1
Q ss_pred ccccceEEEcCCCc--EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe----eEEeecc---------ccccceE
Q 023085 75 LRFANDVVEASDGS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVADG---------FYFANGV 139 (287)
Q Consensus 75 ~~~~~~l~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~---------~~~~~~i 139 (287)
+..|.+|++.++|+ +||++ ..+.|++++++... +..+... .....+|
T Consensus 13 L~~P~~~a~~pdG~~rl~V~e------------------r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgi 74 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILE------------------KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSL 74 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEE------------------TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEE
T ss_pred CCCceEEEECCCCCeEEEEEe------------------CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceee
Confidence 46889999999985 99973 34678888765221 1111111 1234568
Q ss_pred EEccC---CCEEEEEeCCC------------CEEEEEEecCC---C--CcceeEEeccC--C--CCCcceeeCCCCCEEE
Q 023085 140 ALSRD---EDYVVVCESWK------------FRCRKYWLKGE---R--KGKLETFAENL--P--GAPDNINLAPDGTFWI 195 (287)
Q Consensus 140 ~~~~~---~~~l~v~~~~~------------~~l~~~~~~~~---~--~~~~~~~~~~~--~--~~~~~i~~d~~G~lwv 195 (287)
+++|+ .+.||++.+.. .+|.+|.++.. . ....+.+.... . -....|++++||+|||
T Consensus 75 a~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv 154 (463)
T 2wg3_C 75 AFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYI 154 (463)
T ss_dssp EECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEE
T ss_pred EeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEE
Confidence 89986 45799886521 37888887532 1 12233332211 1 1234589999999999
Q ss_pred EEecc
Q 023085 196 AIIKL 200 (287)
Q Consensus 196 ~~~~~ 200 (287)
++...
T Consensus 155 ~~Gd~ 159 (463)
T 2wg3_C 155 ILGDG 159 (463)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.019 Score=53.47 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeC-C-----ccccCeEECCCCcEEEEeCC------CceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFID-S-----QTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~-~-----~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g 62 (287)
++.||+++.++.|+.+| +|+........ . .......+. ++.+|++... ..|+.+| .+|
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCC
Confidence 57899999999999999 67654333322 1 111022232 6788888642 3589999 778
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.01 Score=49.65 Aligned_cols=140 Identities=11% Similarity=0.118 Sum_probs=76.9
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEee----CCccccCeEECCCCcEEEEeCC-CceEEEc-cCC------cEEEeeecC
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFI----DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG------VENFLSYVN 71 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~----~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g------~~~~~~~~~ 71 (287)
.|..++.++.|..|+ .+........ ...++..+++.|++++.++... +.|..++ ... ...+.. ..
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~ 104 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI-IE 104 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE-EC
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE-Ec
Confidence 455566788888888 3332222211 1223337889999986655433 4455555 221 111111 11
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CC---e-eEEeeccccccceEEEccCCC
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SN---I-TTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~---~-~~~~~~~~~~~~~i~~~~~~~ 146 (287)
+ ....+.++++.++|.++++. ..++.|..+|.. .+ + +..+.........++++|+++
T Consensus 105 ~-h~~~V~~v~~sp~g~~las~-----------------s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 166 (330)
T 2hes_X 105 G-HENEVKGVAWSNDGYYLATC-----------------SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166 (330)
T ss_dssp -----CEEEEEECTTSCEEEEE-----------------ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS
T ss_pred C-CCCcEEEEEECCCCCEEEEE-----------------eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC
Confidence 1 12457889999999877752 234567777763 22 2 122233334567889999998
Q ss_pred EEEEEeCCCCEEEEEEecC
Q 023085 147 YVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~ 165 (287)
.|..+ +..+.|..|+...
T Consensus 167 ~l~s~-s~D~~i~iW~~~~ 184 (330)
T 2hes_X 167 LLASS-SYDDTVRIWKDYD 184 (330)
T ss_dssp EEEEE-ETTSCEEEEEEET
T ss_pred EEEEE-cCCCeEEEEECCC
Confidence 55554 4567788887653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.021 Score=52.19 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=28.2
Q ss_pred eEEEEECC-CCcEEEEEECCCCccccceEEEEEeCCEEEEEecC
Q 023085 235 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 277 (287)
Q Consensus 235 ~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~ 277 (287)
+.+..+|. .|+.++.+..+.+. ...+... ..+|++||+...
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~-~a~P~~y-~~~G~qYv~~~~ 548 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGI-VSPPITW-EQDGEQYLGVTV 548 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCc-ccCceEE-EECCEEEEEEEc
Confidence 68889996 49999999876553 2222222 368999998553
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=8.2e-05 Score=66.76 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=55.4
Q ss_pred cccccceEEEcCCCcEEE-EcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc--ccccceEEEccCCCEEEE
Q 023085 74 KLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVV 150 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~l~v 150 (287)
.+.+|++|+++++|+||| +|... +... .........|+++++.+++++.+... ...++|++|+||+++|||
T Consensus 474 ~fnsPDnL~fd~~G~LWf~TD~~~--~~~g----~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV 547 (592)
T 4a9v_A 474 MFNSPDGLGFDKAGRLWILTDGDS--SNAG----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp CCCCEEEEEECTTCCEEEEECCCC--CCSG----GGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred ccCCCCceEECCCCCEEEEeCCCc--Cccc----cccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEE
Confidence 478899999999999999 66542 1100 00122345899999988998887642 457899999999999999
Q ss_pred EeCC
Q 023085 151 CESW 154 (287)
Q Consensus 151 ~~~~ 154 (287)
+-..
T Consensus 548 ~vQH 551 (592)
T 4a9v_A 548 GIQH 551 (592)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8643
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0016 Score=60.80 Aligned_cols=86 Identities=8% Similarity=-0.006 Sum_probs=48.1
Q ss_pred CCCCc-EEEEec---------CCeEEEEE--CCce---EEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cE
Q 023085 2 DKNGV-IYTATR---------DGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VE 64 (287)
Q Consensus 2 d~~G~-l~~~~~---------~g~i~~~~--~~~~---~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~ 64 (287)
.+||. |.+++. ++.|+.++ +++. ..+ ..... .+++.|||+..+......|++.+ .+| ..
T Consensus 68 SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~-~~~~SPDG~~la~~~~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 68 SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ-YLCWSPVGSKLAYVYQNNIYLKQRPGDPPF 143 (719)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC-CEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc-cceECCCCCEEEEEECCeEEEEeCCCCCcE
Confidence 46775 555554 46788888 4443 222 12234 78999999643333355788888 566 54
Q ss_pred EEeeec-CC-----cc--------ccccceEEEcCCCcEEE
Q 023085 65 NFLSYV-NG-----SK--------LRFANDVVEASDGSLYF 91 (287)
Q Consensus 65 ~~~~~~-~~-----~~--------~~~~~~l~~d~~g~l~v 91 (287)
.+.... .. .+ +....+++..+||+..+
T Consensus 144 ~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la 184 (719)
T 1z68_A 144 QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLA 184 (719)
T ss_dssp ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEE
T ss_pred EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEE
Confidence 443211 00 00 01224789999997444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.012 Score=49.54 Aligned_cols=168 Identities=7% Similarity=0.042 Sum_probs=90.4
Q ss_pred CcEEEEecCCeEEEEEC-C-ceEEEEee---CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccccc
Q 023085 5 GVIYTATRDGWIKRLQD-G-TWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~~-~-~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~~ 77 (287)
+.+|++...|.|++-.+ | .++..... +..+. .++..+++++|++....+|++-...| .+.+... ....
T Consensus 90 ~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~----~~~~ 164 (327)
T 2xbg_A 90 NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPR-LIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQE----AIGV 164 (327)
T ss_dssp TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEE-EEEEEETTEEEEEETTCCEEEESSTTSSEEEEECS----CCCC
T ss_pred CeEEEEECCCeEEEECCCCCCceECccccCCCCCeE-EEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecC----CCcc
Confidence 56787777777877653 3 34443322 12344 67777788999887555566654445 5554321 1134
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CCeeEEeecc-ccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADG-FYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
+.++++++++.+|+.. ..+.+++-... ...+..+... ......++++++++ +|+... .
T Consensus 165 ~~~~~~~~~~~~~~~g------------------~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~~-~ 224 (327)
T 2xbg_A 165 MRNLNRSPSGEYVAVS------------------SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIVN-G 224 (327)
T ss_dssp EEEEEECTTSCEEEEE------------------TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEET-T
T ss_pred eEEEEEcCCCcEEEEE------------------CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEeC-C
Confidence 5678888888888742 23457766432 1233333221 12345677788876 676654 3
Q ss_pred CEEEEEEecCCCCcceeEEecc-CCC--CCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~i~~d~~G~lwv~~~~ 199 (287)
+.+++...++.+ ........ .+. ....+++++++.+|++...
T Consensus 225 G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~ 269 (327)
T 2xbg_A 225 GKIAFSDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA 269 (327)
T ss_dssp TEEEEEETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEEST
T ss_pred ceEEEecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeCC
Confidence 455554322111 11111101 011 1234667778899998765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.019 Score=50.25 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEEC--CCCcEE-EEeCCCceEEEc-cCC--cEEEeee-----
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST--KEGHLI-ICDNANGLHKVS-EDG--VENFLSY----- 69 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d--~dg~l~-v~~~~~gi~~~~-~~g--~~~~~~~----- 69 (287)
+++.|..++.+|.|..|+ +++..........+...+.+. +++++. .+...+.|..++ +++ .......
T Consensus 172 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp STTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred CCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 456777788899999999 454333322222222255555 566544 444444566666 444 2111000
Q ss_pred --------------cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-ecccc
Q 023085 70 --------------VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFY 134 (287)
Q Consensus 70 --------------~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~ 134 (287)
..+ ....+.. +.+++.+.++ +..++.|..+|..+++.... .....
T Consensus 252 ~~~~~~~~~~~~~~~~~-~~~~v~~--~~~~~~~l~~-----------------~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRG-HMASVRT--VSGHGNIVVS-----------------GSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp EESCGGGCTTEEEEECC-CSSCEEE--EEEETTEEEE-----------------EETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EeeccCCCeEEEEEccC-ccceEEE--EcCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEecCCCC
Confidence 000 0011222 2344554443 23356788888876664433 23334
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
....++++|+++.++.+. ..+.|..|++..
T Consensus 312 ~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~ 341 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISAS-MDTTIRIWDLEN 341 (464)
T ss_dssp CEEEEEEETTTTEEEEEE-TTSCEEEEETTT
T ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Confidence 556788999999766665 457799999754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.70 E-value=0.017 Score=48.57 Aligned_cols=169 Identities=12% Similarity=0.116 Sum_probs=93.6
Q ss_pred CCc-EEEEecCCeEEEEE-C-Cc----e-EEEEe--eCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeee
Q 023085 4 NGV-IYTATRDGWIKRLQ-D-GT----W-VNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSY 69 (287)
Q Consensus 4 ~G~-l~~~~~~g~i~~~~-~-~~----~-~~~~~--~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~ 69 (287)
+|. |..++.++.|..|+ . ++ . ..... ....++..+++.+++.+.++... +.|..++ +++ ...+...
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 554 56666888888888 2 21 1 11111 11122327888999987665433 4466677 666 3343211
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee---ccccccceEEEccCC-
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDE- 145 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~- 145 (287)
...+.++++.++|...++. ..++.|..+|.......... ........++++|++
T Consensus 118 -----~~~v~~v~~sp~~~~l~s~-----------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 118 -----QSEVYSVAFSPDNRQILSA-----------------GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp -----CSCEEEEEECSSTTEEEEE-----------------ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCC
T ss_pred -----CCcEEEEEECCCCCEEEEE-----------------cCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccc
Confidence 2357889999999877752 23456777776533322222 112234566777765
Q ss_pred ---------CEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 146 ---------DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 146 ---------~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
. ++++....+.|..|+... .....+. .-......+++.++|++.++...
T Consensus 176 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 176 SANKVQPFAP-YFASVGWDGRLKVWNTNF---QIRYTFK-AHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp SCSCCCSSCC-EEEEEETTSEEEEEETTT---EEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccCCCCC-EEEEEcCCCEEEEEcCCC---ceeEEEc-CccccceEEEECCCCCEEEEEcC
Confidence 4 344444567888888322 1111222 12234567888999976665543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.027 Score=52.29 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=28.9
Q ss_pred eEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCC
Q 023085 235 AHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 278 (287)
Q Consensus 235 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 278 (287)
+.|..+|.+ |+.++.+..+.+. ...+... ..+|++|++...+
T Consensus 479 g~l~a~d~~tG~~l~~~~~~~~~-~~~p~~~-~~~G~~yva~~~G 521 (668)
T 1kv9_A 479 GQMHAYSADKGEALWQFEAQSGI-VAAPMTF-ELAGRQYVAIMAG 521 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEEC
T ss_pred ccchhhhhhcChhheEecCCCCc-ccCceEE-EECCEEEEEEEec
Confidence 588899865 8999999876442 2223322 4689999887654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.035 Score=51.76 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=29.2
Q ss_pred eEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCC
Q 023085 235 AHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 278 (287)
Q Consensus 235 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 278 (287)
+.+..+|.+ |+.++.+..+.+. ...+... ..+|+.||+...+
T Consensus 496 g~l~a~D~~tG~~lw~~~~~~~~-~~~p~ty-~~~G~qyv~~~~G 538 (689)
T 1yiq_A 496 GRVIAYAADTGEKLWEQPAASGV-MAAPVTY-SVDGEQYVTFMAG 538 (689)
T ss_dssp SEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEEC
T ss_pred CcEEEEECCCCccceeeeCCCCc-ccCceEE-EECCEEEEEEEec
Confidence 688999965 9999999876553 2233333 4689999886643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.018 Score=48.12 Aligned_cols=137 Identities=11% Similarity=0.021 Sum_probs=76.8
Q ss_pred CCCC-cEEEEecC---C--eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC--------------------
Q 023085 2 DKNG-VIYTATRD---G--WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-------------------- 52 (287)
Q Consensus 2 d~~G-~l~~~~~~---g--~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-------------------- 52 (287)
.+|| .|.+.... + .|+.++ .++......... .. .+++.|||+ |+++...
T Consensus 67 SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 67 SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 4577 45555532 2 377777 455554444333 44 788899996 5555311
Q ss_pred -------CceEEEc-cCC-c-EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC-CceEEEEeC
Q 023085 53 -------NGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP-HGQLLKYDP 121 (287)
Q Consensus 53 -------~gi~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 121 (287)
..|++++ .++ . +.+.. + .+..+++.++| ++++....... .... ...|+.++
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~~~~~---------~~~~~~~~l~~~d- 206 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPHREII---------PQYFKFWDIYIWE- 206 (347)
T ss_dssp -----CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEECCCSS---------CCSSCCEEEEEEE-
T ss_pred ccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEeccccc---------ccccccccEEEeC-
Confidence 3478888 566 5 55532 1 45677888899 66642110000 0001 34789898
Q ss_pred CCCeeEEeeccccccceEEEccCCCEEEEEeCC-------CCEEEEEE
Q 023085 122 SSNITTLVADGFYFANGVALSRDEDYVVVCESW-------KFRCRKYW 162 (287)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~-------~~~l~~~~ 162 (287)
+++...+... .... .++|+|+.+++.... ...|+.++
T Consensus 207 -~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 207 -DGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp -TTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred -CCceEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC
Confidence 4776655443 2112 238999877766533 24788887
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.018 Score=48.05 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=76.7
Q ss_pred cEEEEecCCeEEEEE--C-CceE-E-EEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeecCCccccc
Q 023085 6 VIYTATRDGWIKRLQ--D-GTWV-N-WKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~-~~~~-~-~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
.|..++.+|.|..|+ + +... . +........ .+++.+++++.++ ...+.|..++ .++ ...+... ...
T Consensus 56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~ 129 (368)
T 3mmy_A 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQH-----DAP 129 (368)
T ss_dssp EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----SSC
T ss_pred EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccc-----cCc
Confidence 566777889999998 3 4432 2 222233334 8899999975554 4444577777 666 4333221 235
Q ss_pred cceEEE--cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVE--ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
+.++.+ .+++.++++. ..++.|..+|..+++......... ...+++.....++++.. .
T Consensus 130 v~~~~~~~~~~~~~l~~~-----------------~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~ 189 (368)
T 3mmy_A 130 VKTIHWIKAPNYSCVMTG-----------------SWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVIYPMAVVATA-E 189 (368)
T ss_dssp EEEEEEEECSSCEEEEEE-----------------ETTSEEEEECSSCSSCSEEEECSS--CEEEEEEETTEEEEEEG-G
T ss_pred eEEEEEEeCCCCCEEEEc-----------------cCCCcEEEEECCCCcEEEEEecCC--CceEEEecCCeeEEEeC-C
Confidence 677887 7888766642 235678888876655322221111 22233333444555554 4
Q ss_pred CEEEEEEecC
Q 023085 156 FRCRKYWLKG 165 (287)
Q Consensus 156 ~~l~~~~~~~ 165 (287)
+.+..|+...
T Consensus 190 ~~i~~~~~~~ 199 (368)
T 3mmy_A 190 RGLIVYQLEN 199 (368)
T ss_dssp GCEEEEECSS
T ss_pred CcEEEEEecc
Confidence 5678888653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.019 Score=47.37 Aligned_cols=110 Identities=9% Similarity=-0.072 Sum_probs=64.4
Q ss_pred CeEECCCCcEEEEeCC-CceEEEc-cCC--c-EEEeeecCCccccccceEEEcC--CCcEEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVS-EDG--V-ENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~-~~~~~~~~~~~~~~~~~l~~d~--~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+++.+++++.++... +.|..++ .++ . +...... + ....+.++++.+ ++.++++.
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~d~~~l~s~---------------- 77 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-A-HDSSIVAIDWASPEYGRIIASA---------------- 77 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-C-CSSCEEEEEECCGGGCSEEEEE----------------
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-c-CCCcEEEEEEcCCCCCCEEEEE----------------
Confidence 7889999975555333 3466666 433 2 2322111 1 124577888887 57766642
Q ss_pred cCCCceEEEEeCCCCe----------eEEeeccccccceEEEccC--CCEEEEEeCCCCEEEEEEecCC
Q 023085 110 GKPHGQLLKYDPSSNI----------TTLVADGFYFANGVALSRD--EDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~--~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
..++.|..+|..+++ +..+.........++++|+ ++.++.+. ..+.|..||+...
T Consensus 78 -~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 78 -SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG-NDGILRLYDALEP 144 (351)
T ss_dssp -ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTCEEEEEECSST
T ss_pred -cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec-CCCcEEEecCCCh
Confidence 224556666655432 2222333345677889998 87666655 4678999997643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0067 Score=58.41 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=99.6
Q ss_pred CCCCc-EEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCccc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
+++|. |..|+.+|.|..|+ .+...........++..+++.+ |+ |..+...+.|...+ .++ +..+. . .
T Consensus 26 spdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~-----~ 98 (902)
T 2oaj_A 26 DFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-V-----P 98 (902)
T ss_dssp ETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-C-----S
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-C-----C
Confidence 56774 55677889999998 3322222222223333788888 77 44445445677777 566 44442 1 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee------------ccccccceEEEcc
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------------DGFYFANGVALSR 143 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------------~~~~~~~~i~~~~ 143 (287)
..+..+++++++...++ +..++.|..+|.++++...+. ........++|+|
T Consensus 99 ~~V~~v~~sp~g~~l~s-----------------gs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLI-----------------GLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp SCEEEEECCTTCSEEEE-----------------EETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred CCEEEEEECCCCCEEEE-----------------EcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 35788999999986664 234567888888766653211 1123456789999
Q ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-C----------------CCCCcceeeCCCCCEEEEEec
Q 023085 144 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-L----------------PGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++..+.++....+.+ .||+...+ ....+... . ......+++.++|++.++...
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 653344455556778 88875431 11122111 0 023456888899986666654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.022 Score=47.62 Aligned_cols=143 Identities=10% Similarity=0.032 Sum_probs=74.6
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.+.++++ .|..+...+.|..++ ..+ .........+.....+.++++.+++.+.++. ..++
T Consensus 19 ~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~-----------------s~D~ 80 (330)
T 2hes_X 19 SFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG-----------------SFDS 80 (330)
T ss_dssp EEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE-----------------ETTS
T ss_pred eeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE-----------------eCCC
Confidence 5666666 344444334466666 444 3332221112123467889999999877752 2244
Q ss_pred eEEEEeCCCC-------ee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC-CCcce-eEEeccCCCCCcc
Q 023085 115 QLLKYDPSSN-------IT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKL-ETFAENLPGAPDN 184 (287)
Q Consensus 115 ~v~~~~~~~~-------~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 184 (287)
.|..++.... +. ..+.........++|+|+++.|..+. ..+.|..|++... ...+. ..+. .-......
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s-~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~ 158 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS-RDKSVWIWETDESGEEYECISVLQ-EHSQDVKH 158 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE-TTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEeccCCCCCeEEEEEec-cCCCceEE
Confidence 5666654311 11 11222233456789999998665554 4677889987421 11111 1221 11223566
Q ss_pred eeeCCCCCEEEEEec
Q 023085 185 INLAPDGTFWIAIIK 199 (287)
Q Consensus 185 i~~d~~G~lwv~~~~ 199 (287)
+++.+++++.++...
T Consensus 159 v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 159 VIWHPSEALLASSSY 173 (330)
T ss_dssp EEECSSSSEEEEEET
T ss_pred EEECCCCCEEEEEcC
Confidence 788888876665543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.028 Score=52.78 Aligned_cols=180 Identities=12% Similarity=0.071 Sum_probs=88.3
Q ss_pred CCCCc-EEEEe-cCC----eEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCC--------------ceEEEc
Q 023085 2 DKNGV-IYTAT-RDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--------------GLHKVS 59 (287)
Q Consensus 2 d~~G~-l~~~~-~~g----~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~--------------gi~~~~ 59 (287)
.+||. |.++. .+| .|+.++ +|+............ +++..+|..|+++.... .|++.+
T Consensus 171 SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~ 249 (741)
T 1yr2_A 171 SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHR 249 (741)
T ss_dssp CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCEEEEEE
T ss_pred CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCEEEEEE
Confidence 35664 43443 323 477777 555533221111113 77888884466664322 266766
Q ss_pred -cCC-c-EEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC--e-eEEeecc
Q 023085 60 -EDG-V-ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--I-TTLVADG 132 (287)
Q Consensus 60 -~~g-~-~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~ 132 (287)
.++ . ..+....... .....++.++++|. |.++... .......|+.+|..++ + +..+...
T Consensus 250 lgt~~~~~~lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~-------------~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 250 LGTPQSADQPVFATPEL-PKRGHGASVSSDGRWVVITSSE-------------GTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp TTSCGGGCEEEECCTTC-TTCEEEEEECTTSCEEEEEEEC-------------TTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred CCCCchhCEEEeccCCC-CeEEEEEEECCCCCEEEEEEEc-------------cCCCcceEEEEECCCCCCcccEEecCC
Confidence 444 2 2222211111 11345778899996 4432111 0012347888887655 4 4544433
Q ss_pred ccccceEEEccCCCEEEEEeCC---CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 133 FYFANGVALSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
....... ++++++.||+.... ..+|+++++++.. .....+.........++.++ ++.|+++...
T Consensus 316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~ 382 (741)
T 1yr2_A 316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIH 382 (741)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEE
Confidence 2222222 35888888877642 3579999976532 23333332222223345555 4556665543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.01 Score=55.30 Aligned_cols=168 Identities=10% Similarity=0.091 Sum_probs=84.4
Q ss_pred CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCc-------------eEEEc-cCC-c-EEEeeecCCcc
Q 023085 14 GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-------------LHKVS-EDG-V-ENFLSYVNGSK 74 (287)
Q Consensus 14 g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~g-------------i~~~~-~~g-~-~~~~~~~~~~~ 74 (287)
..|+.++ +++.............+++..+||+ |+.+..... |++.+ .++ . ..+.......
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~- 225 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD- 225 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-
T ss_pred EEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-
Confidence 3577777 4443201111111112788999996 444443222 88887 444 2 2222211111
Q ss_pred ccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.....++.++++|. |.++... ......|+.++..++++..+...........+ ++++ +|+...
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~ 289 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILR--------------GWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTD 289 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEE--------------TTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEEC
T ss_pred CEEEEEEEECCCCCEEEEEEeC--------------CCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEEC
Confidence 12445778899986 4442110 10234688887665666555443332233333 7787 777654
Q ss_pred ---CCCEEEEEEecCCCCcceeEEeccC-CCCCcceeeCCCCCEEEEEec
Q 023085 154 ---WKFRCRKYWLKGERKGKLETFAENL-PGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ---~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...+|++++++++.......+.... .....++++. ++.++++...
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 290 EGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp TTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred CCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence 2468999987654322223333221 1123445565 5666666543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.033 Score=50.45 Aligned_cols=138 Identities=7% Similarity=0.002 Sum_probs=78.5
Q ss_pred CeEECCCCc-EEEEeCCCceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 37 GLTSTKEGH-LIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
++++.|||. |-+++..+.+..++..+ +..+. .....+...+.++++.++|.+.++ +..++
T Consensus 90 ~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAs-----------------gs~DG 151 (588)
T 2j04_A 90 VCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVV-----------------GNEDG 151 (588)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEE-----------------EETTS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEE-----------------EcCCC
Confidence 778899996 55555444566665555 33332 111111235789999999986664 23457
Q ss_pred eEEEEeCCCCee--------EEee----ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcc-eeEEeccCCCC
Q 023085 115 QLLKYDPSSNIT--------TLVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGA 181 (287)
Q Consensus 115 ~v~~~~~~~~~~--------~~~~----~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 181 (287)
.|..++..++.. ..+. ........++|+|++ + ++...++.+..+++++....+ ...+...-...
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 788888776632 3321 122456788999998 3 444456789999987644221 11221111123
Q ss_pred CcceeeCCCCCEEEEE
Q 023085 182 PDNINLAPDGTFWIAI 197 (287)
Q Consensus 182 ~~~i~~d~~G~lwv~~ 197 (287)
...+++. |+.-+++
T Consensus 229 V~svaFs--g~~LASa 242 (588)
T 2j04_A 229 ITDLKIV--DYKVVLT 242 (588)
T ss_dssp CCCEEEE--TTEEEEE
T ss_pred EEEEEEE--CCEEEEE
Confidence 5667776 4443333
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.026 Score=52.67 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=70.8
Q ss_pred eEEEc-cCC-cEEEeeecC---CccccccceEEEcCCCcEEE-E-cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE
Q 023085 55 LHKVS-EDG-VENFLSYVN---GSKLRFANDVVEASDGSLYF-T-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 127 (287)
Q Consensus 55 i~~~~-~~g-~~~~~~~~~---~~~~~~~~~l~~d~~g~l~v-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (287)
+++.+ .++ .+.+..... +. .....++++.+||+..+ + +.. +.....|+.+|..+++..
T Consensus 100 l~~~~~~~~~~~~lld~~~l~~~~-~~~~~~~~~SPDg~~la~~~~~~--------------G~~~~~i~v~d~~tg~~~ 164 (710)
T 2xdw_A 100 LYVQDSLEGEARVFLDPNILSDDG-TVALRGYAFSEDGEYFAYGLSAS--------------GSDWVTIKFMKVDGAKEL 164 (710)
T ss_dssp EEEESSTTSCCEEEECGGGGCTTS-CEEEEEEEECTTSSEEEEEEEET--------------TCSCEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCcEEEECHHHhccCC-CEEEEEEEECCCCCEEEEEEcCC--------------CCceEEEEEEECCCCCCC
Confidence 57776 445 555533211 11 11356788999997443 2 111 111237999999888865
Q ss_pred EeeccccccceEEEccCCCEEEEEeCCC---------------CEEEEEEecCCCCcceeEEecc-CCCCCcceeeCCCC
Q 023085 128 LVADGFYFANGVALSRDEDYVVVCESWK---------------FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDG 191 (287)
Q Consensus 128 ~~~~~~~~~~~i~~~~~~~~l~v~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G 191 (287)
..........+++|+|||+.|+++.... ..|+++++.+++......+... .+....++.+.+||
T Consensus 165 ~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg 244 (710)
T 2xdw_A 165 PDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG 244 (710)
T ss_dssp EEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS
T ss_pred cccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC
Confidence 4322222246789999999888876432 2488888764322112222211 11223467788898
Q ss_pred C-EEEEEe
Q 023085 192 T-FWIAII 198 (287)
Q Consensus 192 ~-lwv~~~ 198 (287)
+ |.++..
T Consensus 245 ~~l~~~~~ 252 (710)
T 2xdw_A 245 RYVLLSIR 252 (710)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 6 444443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.012 Score=46.42 Aligned_cols=134 Identities=11% Similarity=0.041 Sum_probs=77.9
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC--------cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeee
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG--------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g--------~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~ 107 (287)
.++++|+|.||+. ....+++++ +++ .+.+-.. + ...-.++.+|++|.||+.
T Consensus 45 ~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~--G--w~~F~a~~fD~~G~LYav--------------- 104 (236)
T 1tl2_A 45 FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG--G--WNQFQFLFFDPNGYLYAV--------------- 104 (236)
T ss_dssp EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECS--C--GGGCSEEEECTTSCEEEE---------------
T ss_pred eEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccc--c--cccceEEEECCCCCEEEe---------------
Confidence 7999999999999 345699998 452 1222110 1 122467999999999995
Q ss_pred eccCCCceEEEEeCCCC-eeEEe-------eccccccceEEEccCCCEEEEEeCCCCEEEEEEec-CCC---CcceeEEe
Q 023085 108 LEGKPHGQLLKYDPSSN-ITTLV-------ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK-GER---KGKLETFA 175 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~-~~~~~-------~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~-~~~---~~~~~~~~ 175 (287)
.++.|+|+++.+. .-..+ ...-.....+.++|+|. ||... ++++++-... +.. ......+.
T Consensus 105 ----~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g 177 (236)
T 1tl2_A 105 ----SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIG 177 (236)
T ss_dssp ----ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred ----CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceec
Confidence 2478999987432 11111 01112336678899996 88887 4567663322 110 00111111
Q ss_pred ccCCCCCcceeeCCCCCEEEEE
Q 023085 176 ENLPGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 176 ~~~~~~~~~i~~d~~G~lwv~~ 197 (287)
...-..-.-+.++++|+||..+
T Consensus 178 ~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 178 QGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp SSSGGGEEEEEECTTSCEEEEE
T ss_pred cCCcceEEEEEECCCCcEEEEe
Confidence 0000011236688999999998
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.018 Score=54.21 Aligned_cols=132 Identities=12% Similarity=0.051 Sum_probs=73.3
Q ss_pred CeEECCCCcEE-EEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLI-ICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~-v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.+++.++|++. .+...+.|..++ .++ ........ + ....+.++++.++ +.+.++. .
T Consensus 14 ~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~-h~~~V~~l~~s~~~~~~~l~s~-----------------s 74 (753)
T 3jro_A 14 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-G-HEGPVWRVDWAHPKFGTILASC-----------------S 74 (753)
T ss_dssp EECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-C-CSSCEEEEEECCTTSCSEEEEE-----------------E
T ss_pred EEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-C-CcCceEEEEecCCCCCCEEEEE-----------------e
Confidence 67788888644 444444466666 433 22222111 1 1245778888766 7776652 2
Q ss_pred CCceEEEEeCCCCeeE---EeeccccccceEEEccC--CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 112 PHGQLLKYDPSSNITT---LVADGFYFANGVALSRD--EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~---~~~~~~~~~~~i~~~~~--~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
.++.|..+|..+++.. ...........++++|+ ++.++.+. ..+.|..|++..........+. ........++
T Consensus 75 ~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~ 152 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKENGTTSPIIID-AHAIGVNSAS 152 (753)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEE
T ss_pred CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe-CCCcEEEEEeecCCCcceeEee-cCCCceEEEE
Confidence 3456776776656422 22233345677889998 87665554 5678999998653222121221 1222345566
Q ss_pred eCC
Q 023085 187 LAP 189 (287)
Q Consensus 187 ~d~ 189 (287)
+.+
T Consensus 153 ~~p 155 (753)
T 3jro_A 153 WAP 155 (753)
T ss_dssp ECC
T ss_pred ecC
Confidence 666
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.06 Score=50.12 Aligned_cols=143 Identities=7% Similarity=-0.034 Sum_probs=71.2
Q ss_pred eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC-------------ceEEEc-cCC-c--EEEeeecCCcc
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-------------GLHKVS-EDG-V--ENFLSYVNGSK 74 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~-------------gi~~~~-~~g-~--~~~~~~~~~~~ 74 (287)
.|+.++ +|+............ +++.. ||+ |+++.... .|++.+ .++ . ..+... ....
T Consensus 156 ~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~ 232 (693)
T 3iuj_A 156 EIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQ 232 (693)
T ss_dssp EEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGG
T ss_pred EEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCC
Confidence 456666 555433222111112 66777 774 66664331 266666 333 1 233221 1100
Q ss_pred ccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC--eeEEeeccccccceEEEccCCCEEEEE
Q 023085 75 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 75 ~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
.....++.++++|. |+++... ......|+.++.+++ ++..+......... .++++++.+|+.
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~--------------~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~ 297 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAAN--------------STSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLL 297 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEES--------------SSSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEcc--------------CCCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEE
Confidence 11234677888886 4443211 112347888887544 45544433222122 256777777776
Q ss_pred eCC---CCEEEEEEecCCCCcceeEEe
Q 023085 152 ESW---KFRCRKYWLKGERKGKLETFA 175 (287)
Q Consensus 152 ~~~---~~~l~~~~~~~~~~~~~~~~~ 175 (287)
... ..+|++++++++.....+.+.
T Consensus 298 t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 298 TNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp ECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred ECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 543 368999998754333334443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.058 Score=46.91 Aligned_cols=215 Identities=13% Similarity=0.094 Sum_probs=105.6
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
.|..++.+|.|..|+ +++..........+...+.+ ++ .+..+...+.|..++ .++ ...+.. ....+.
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~ 283 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG-----HTNRVY 283 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC-----CSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC-----CCCceE
Confidence 455666777777777 34332222221222214444 44 455555444566666 455 333211 112345
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l 158 (287)
++.+ ++...++ +..++.|..+|..+++..... ........+ .++++.++.+. ..+.|
T Consensus 284 ~~~~--~~~~l~~-----------------~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-~dg~i 341 (445)
T 2ovr_B 284 SLQF--DGIHVVS-----------------GSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGN-ADSTV 341 (445)
T ss_dssp EEEE--CSSEEEE-----------------EETTSCEEEEETTTCCEEEEECCCCSCEEEE--EEETTEEEEEE-TTSCE
T ss_pred EEEE--CCCEEEE-----------------EeCCCeEEEEECCCCCEEEEEcCCcccEEEE--EEeCCEEEEEe-CCCeE
Confidence 5555 4444443 223567888887766543322 222222333 44566555554 56789
Q ss_pred EEEEecCCCCcceeEEecc--CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceE
Q 023085 159 RKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH 236 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (287)
..|++...+ ....+... .......++++ +++.++... .+.
T Consensus 342 ~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~----------------------------------dg~ 383 (445)
T 2ovr_B 342 KIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSD----------------------------------DGT 383 (445)
T ss_dssp EEEETTTCC--EEEEECSTTSCSSCEEEEEEC--SSEEEEEET----------------------------------TSE
T ss_pred EEEECCCCc--EEEEEccCCCCCCCEEEEEEC--CCEEEEEeC----------------------------------CCe
Confidence 999975422 12222210 11224456664 444444443 257
Q ss_pred EEEECC-CCcEEEEEECC-CCccccceEEEEEeC-CEE-EEEecCCC---eEEEEeCC
Q 023085 237 LIHVAE-DGTIIRNLVDP-TGQLMSFVTSGLQVD-NHL-YVISLTSN---FIGKVQLS 287 (287)
Q Consensus 237 v~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~-g~l-~i~~~~~~---~i~~~~~~ 287 (287)
|..++. .++.+..+... .+.....+..+.... +.+ .+++..+. .|.++|++
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 777775 47777766321 122234567777764 443 33333332 48888874
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0088 Score=56.14 Aligned_cols=125 Identities=6% Similarity=-0.046 Sum_probs=70.3
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCC-ccc----cCeEECCCCc-EEEEeCC---------CceEEEc-cCC-c
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTL----VGLTSTKEGH-LIICDNA---------NGLHKVS-EDG-V 63 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-~~~----~~i~~d~dg~-l~v~~~~---------~gi~~~~-~~g-~ 63 (287)
+||.+.+.+ ++.|..++ +++......... ... .++++.|||+ |.++... ..++.++ .+| .
T Consensus 26 ~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~ 104 (740)
T 4a5s_A 26 SDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (740)
T ss_dssp SSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence 566555444 88999999 555444432211 111 0267799997 4444321 2356777 566 4
Q ss_pred EEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc---------
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------- 133 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------- 133 (287)
..+... .......++.+||. |.++ ..+.|+.++..+++...+....
T Consensus 105 ~~l~~~-----~~~~~~~~~SPdG~~la~~-------------------~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 105 ITEERI-----PNNTQWVTWSPVGHKLAYV-------------------WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp CCSSCC-----CTTEEEEEECSSTTCEEEE-------------------ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred EEcccC-----CCcceeeEECCCCCEEEEE-------------------ECCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 443211 12356678888886 3332 2356888877666655443211
Q ss_pred ----------cccceEEEccCCCEEEEEe
Q 023085 134 ----------YFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 134 ----------~~~~~i~~~~~~~~l~v~~ 152 (287)
....+++|+|||+.|....
T Consensus 161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred ccccccchhcCCCcceEECCCCCEEEEEE
Confidence 1123578999999777654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.047 Score=50.88 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=61.8
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCc-----------cccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEe
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----------TLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFL 67 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~-----------~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~ 67 (287)
+|.||+++.++.|+.+| +|+.......... ...+++++ +++||+++....|+.+| .+| +-...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 67899999888999999 6765433322111 01134443 67999998666799999 788 22222
Q ss_pred eecCCcccccc-ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE
Q 023085 68 SYVNGSKLRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128 (287)
Q Consensus 68 ~~~~~~~~~~~-~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 128 (287)
..........+ ....+ .++.+++.....++ ...+.|+.+|.++|+...
T Consensus 149 ~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRV-VNGKVVIGNGGAEF------------GVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp CCSCTTSCCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred CcCCCCCCccccCCcEE-ECCEEEEEeCCCcc------------CCCCEEEEEECCCCcEEE
Confidence 11010000000 01112 25788885332111 124678888888787544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.027 Score=47.78 Aligned_cols=135 Identities=11% Similarity=0.009 Sum_probs=75.7
Q ss_pred CCeEEEEE--CCceEEEEeeCCccccCeEECC-CCc-EEEEeCC------CceEEEc-cCC-cEEEeeecCCccccccce
Q 023085 13 DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGH-LIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 13 ~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~-dg~-l~v~~~~------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~ 80 (287)
...|+.++ +++............ .+.+.+ +|+ |+++... ..|+.++ ..+ ...+.. ..+...+..
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~ 242 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQDTAWLG-HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---HAEGESCTH 242 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---CCTTEEEEE
T ss_pred cceEEEEECCCCcEEeeccCCcccc-cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---cCCCccccc
Confidence 34677787 555555544333334 677888 675 5554322 2588888 444 444422 111124566
Q ss_pred EEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc-CCCEEEEEeC-----
Q 023085 81 VVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-DEDYVVVCES----- 153 (287)
Q Consensus 81 l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~l~v~~~----- 153 (287)
+++.++|. |+++... .+.....|+.+|..+++...+.... ... +.++| +++.++.+..
T Consensus 243 ~~~spdg~~l~~~~~~-------------~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYF-------------KGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp EEECTTSSCEEEEEEE-------------TTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC---
T ss_pred eEECCCCCEEEEEecC-------------CCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCccee
Confidence 78899986 4443100 0111245999998877765543211 112 77889 9996655431
Q ss_pred ----------CCCEEEEEEecCC
Q 023085 154 ----------WKFRCRKYWLKGE 166 (287)
Q Consensus 154 ----------~~~~l~~~~~~~~ 166 (287)
....|+.+++++.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp -------CCCCCCEEEEEETTTT
T ss_pred eccccccccCCCCcEEEEecccC
Confidence 2367999987654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.011 Score=51.91 Aligned_cols=102 Identities=9% Similarity=-0.058 Sum_probs=58.7
Q ss_pred ccceEEEcCCCcEEE----EcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-----e-------eEEeeccccccceEE
Q 023085 77 FANDVVEASDGSLYF----TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-----I-------TTLVADGFYFANGVA 140 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~-------~~~~~~~~~~~~~i~ 140 (287)
.+.+++++++|...+ +. ...+.|..+|..++ + +..+.........++
T Consensus 94 ~v~~l~~spdg~~lav~~~sg-----------------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 156 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSS-----------------EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK 156 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEET-----------------TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE
T ss_pred cccEEEEcCCCCEEEEEEecc-----------------CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE
Confidence 478899999987655 31 23456666765322 0 111112234567889
Q ss_pred EccC-CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 141 LSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 141 ~~~~-~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
|+|+ ++ ++++.+..+.|..||+.... ...... .....+..+++.++|+..++...
T Consensus 157 ~~p~~~~-~las~s~Dg~v~iwD~~~~~--~~~~~~-~~~~~v~~v~wspdg~~lasgs~ 212 (434)
T 2oit_A 157 WNPTVPS-MVAVCLADGSIAVLQVTETV--KVCATL-PSTVAVTSVCWSPKGKQLAVGKQ 212 (434)
T ss_dssp ECSSCTT-EEEEEETTSCEEEEEESSSE--EEEEEE-CGGGCEEEEEECTTSSCEEEEET
T ss_pred ECCCCCC-EEEEEECCCeEEEEEcCCCc--ceeecc-CCCCceeEEEEcCCCCEEEEEcC
Confidence 9998 55 55555567789999986431 111111 11224677889999865544443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0056 Score=48.24 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=55.2
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCce-------EEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cC-CcEEEee-
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTW-------VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-GVENFLS- 68 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~-------~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~-g~~~~~~- 68 (287)
++++|.||.. .+|.|++.+ +... +++-...-.-...+.+|++|.||+.+. ..|++++ ++ +-..+..
T Consensus 48 f~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~d-G~iyr~~pP~~~~~~Wl~~ 125 (236)
T 1tl2_A 48 LSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK-DKLYKASPPQSDTDNWIAR 125 (236)
T ss_dssp ECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHH
T ss_pred ECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeCC-CEEEEeCCCcCCCCceecc
Confidence 4678999998 788899988 3111 122111111123688999999999953 5688998 43 2111100
Q ss_pred --ecCCccccccceEEEcCCCcEEEEc
Q 023085 69 --YVNGSKLRFANDVVEASDGSLYFTV 93 (287)
Q Consensus 69 --~~~~~~~~~~~~l~~d~~g~l~v~~ 93 (287)
......-.....|.++++|.||...
T Consensus 126 a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 126 ATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp SEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred ccEeccCCCCceEEEEECCCceEEEEe
Confidence 0001112345789999999999953
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.26 E-value=0.06 Score=44.47 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=87.0
Q ss_pred Cc-EEEEecCCeEEEEE--CCce---EEEEe---eCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC-cEEEeeecCC
Q 023085 5 GV-IYTATRDGWIKRLQ--DGTW---VNWKF---IDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 5 G~-l~~~~~~g~i~~~~--~~~~---~~~~~---~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g-~~~~~~~~~~ 72 (287)
+. |..++.++.|..|+ .++. ..... ...... .+.+.++|++.++....+ +...+ ..+ ........
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-- 127 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH-- 127 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE-EEEECCCCCEEEEEcccccceEEeecccceeeeecCC--
Confidence 44 45566888888888 2221 11111 122334 788999998666543444 55555 333 22221111
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCC-EEE
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDED-YVV 149 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~-~l~ 149 (287)
...+......+++..+++. ..++.+..++.......... ........+++++++. .++
T Consensus 128 --~~~~~~~~~~~~~~~l~s~-----------------s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 128 --TKDVLSVAFSSDNRQIVSG-----------------SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp --SSCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred --CCceeEEEEeecCccceee-----------------cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 1233445566666655541 23455666766533322221 1122334566766543 244
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++......|..++....+ ....+. .-.+....+++.++|++.++...
T Consensus 189 ~s~~~d~~i~i~d~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCK--LKTNHI-GHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp EEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEcCCCEEEEEECCCCc--eeeEec-CCCCcEEEEEECCCCCEEEEEeC
Confidence 555556678888865421 111221 12234567889999987766654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.018 Score=51.82 Aligned_cols=141 Identities=11% Similarity=-0.023 Sum_probs=85.0
Q ss_pred CCCcEEEEecCCeEEEEE--CCceE--EEEeeCCccccCe--EECCCC-cEEEEeCC-CceEEEc-cCC--cEEEeeecC
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWV--NWKFIDSQTLVGL--TSTKEG-HLIICDNA-NGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~--~~~~~~~~~~~~i--~~d~dg-~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~ 71 (287)
+++.|..|+.+|.|..|+ ++... .+........ ++ +..++| ++.++... +.|...| +++ ...+.....
T Consensus 276 ~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 276 SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp SSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred CCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 345788888999999999 34322 2222222223 66 456777 76665434 3466677 565 333322211
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVV 150 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v 150 (287)
...+..+++.+++..+++. ...+.|..+|..++.. ..+.........++++|+++.|..
T Consensus 355 ---~~~v~~v~fsp~~~~l~s~-----------------~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 355 ---GSNLVPVVYCPQIYSYIYS-----------------DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp ---CCSCCCEEEETTTTEEEEE-----------------CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred ---cCcccceEeCCCcCeEEEe-----------------CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 1135778999999877752 2245677778765543 333344456678999999985554
Q ss_pred EeCCCCEEEEEEecC
Q 023085 151 CESWKFRCRKYWLKG 165 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~ 165 (287)
+ +..+.|..+++..
T Consensus 415 g-s~Dgtv~lwd~~~ 428 (524)
T 2j04_B 415 G-SADGSLIITNAAR 428 (524)
T ss_dssp E-ETTTEEECCBSCS
T ss_pred E-ECCCEEEEEechH
Confidence 4 4567888888654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.086 Score=45.70 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=65.8
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceE
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDV 81 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l 81 (287)
.|..++.+|.|..|+ +++..........+...+.++ ++.++.+...+.|..++ .++ .........+ ....+..+
T Consensus 185 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~ 262 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVV 262 (435)
T ss_dssp EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECC-CSSCEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC-CCCcEEEE
Confidence 455566677777777 343322222212222144443 23455555444566666 444 2211111111 11244555
Q ss_pred EEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEE
Q 023085 82 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRK 160 (287)
Q Consensus 82 ~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~ 160 (287)
.. ++...++ +..++.|..+|..+++.... .........+.+ +++.++.+. ..+.|..
T Consensus 263 ~~--~~~~l~s-----------------~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~-~dg~i~i 320 (435)
T 1p22_A 263 DF--DDKYIVS-----------------ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRL 320 (435)
T ss_dssp EE--ETTEEEE-----------------EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TTSCEEE
T ss_pred Ee--CCCEEEE-----------------EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe-CCCeEEE
Confidence 55 3444443 23356788888876654332 222223334444 466555554 5678999
Q ss_pred EEecC
Q 023085 161 YWLKG 165 (287)
Q Consensus 161 ~~~~~ 165 (287)
||+..
T Consensus 321 wd~~~ 325 (435)
T 1p22_A 321 WDIEC 325 (435)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.05 Score=50.57 Aligned_cols=128 Identities=15% Similarity=-0.016 Sum_probs=70.2
Q ss_pred eEEEc-cCC-cEEEeeecC---CccccccceEEEcCCCcEEE-E-cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE
Q 023085 55 LHKVS-EDG-VENFLSYVN---GSKLRFANDVVEASDGSLYF-T-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 127 (287)
Q Consensus 55 i~~~~-~~g-~~~~~~~~~---~~~~~~~~~l~~d~~g~l~v-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (287)
|++.+ ..+ .+.+..... +. ...+.++++.+||+..+ + +.+ +.....|+.+|..+++..
T Consensus 96 l~~~~~~~~~~~~l~d~~~~a~~~-~~~~~~~~~SPDG~~la~~~~~~--------------G~~~~~i~v~dl~tg~~~ 160 (695)
T 2bkl_A 96 LYWRQGESGQEKVLLDPNGWSKDG-TVSLGTWAVSWDGKKVAFAQKPN--------------AADEAVLHVIDVDSGEWS 160 (695)
T ss_dssp EEEEESTTSCCEEEECGGGSSSSS-CEEEEEEEECTTSSEEEEEEEET--------------TCSCCEEEEEETTTCCBC
T ss_pred EEEEcCCCCCcEEEEchHHhccCC-CEEEEEEEECCCCCEEEEEECCC--------------CCceEEEEEEECCCCCCc
Confidence 67776 445 566543211 11 12456788999997544 2 111 122357999999887753
Q ss_pred Eeecccccc--ceEEEccCCCEEEEEeCCC------------CEEEEEEecCCCCcceeEEeccC-CCCCcceeeCCCCC
Q 023085 128 LVADGFYFA--NGVALSRDEDYVVVCESWK------------FRCRKYWLKGERKGKLETFAENL-PGAPDNINLAPDGT 192 (287)
Q Consensus 128 ~~~~~~~~~--~~i~~~~~~~~l~v~~~~~------------~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~ 192 (287)
. ...+... .+++|+|||+.|+.+.... ..|+++++.++.......+.... .....++.+++||+
T Consensus 161 ~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~ 239 (695)
T 2bkl_A 161 K-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK 239 (695)
T ss_dssp S-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC
T ss_pred C-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC
Confidence 1 1112222 6789999999888776432 34889887654322122222111 11234677889985
Q ss_pred -EEEEEe
Q 023085 193 -FWIAII 198 (287)
Q Consensus 193 -lwv~~~ 198 (287)
|.++..
T Consensus 240 ~l~~~~~ 246 (695)
T 2bkl_A 240 YLFVYIL 246 (695)
T ss_dssp CEEEEEE
T ss_pred EEEEEEe
Confidence 444443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.063 Score=43.99 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=86.0
Q ss_pred CCCCc-EEEEecCCeEEEEE-CC-c--e-EEEEeeCCccccCeEECC--CCcEEEE-eCCCceEEEc-cCC-cEEEeeec
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-DG-T--W-VNWKFIDSQTLVGLTSTK--EGHLIIC-DNANGLHKVS-EDG-VENFLSYV 70 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~~-~--~-~~~~~~~~~~~~~i~~d~--dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~ 70 (287)
+++|. |..++.++.|..|+ .+ . . ..+........ .+++.+ +|++.++ ...+.|...+ .++ ...+....
T Consensus 18 s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 96 (297)
T 2pm7_B 18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA 96 (297)
T ss_dssp CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee
Confidence 56774 55666888888888 32 2 1 12222222233 677764 4766555 4334466666 554 32221111
Q ss_pred CCccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe---eEEeeccccccceEEEccC-
Q 023085 71 NGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFANGVALSRD- 144 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~i~~~~~- 144 (287)
.....+.++++.++ |.++++. ..++.|..++..++. ...+.........++++|+
T Consensus 97 --~h~~~v~~v~~~p~~~g~~l~s~-----------------s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 97 --VHSASVNSVQWAPHEYGPMLLVA-----------------SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp --CCSSCEEEEEECCGGGCSEEEEE-----------------ETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred --cCCCceeEEEeCcCCCCcEEEEE-----------------ECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 11235778888876 6666642 234566666655332 1222222334456777775
Q ss_pred ------------CCEEEEEeCCCCEEEEEEecCCCCc--ceeEEeccCCCCCcceeeCCCC
Q 023085 145 ------------EDYVVVCESWKFRCRKYWLKGERKG--KLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 145 ------------~~~l~v~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~G 191 (287)
++ ++++....+.|..|++...... ....+. .-......+++.+++
T Consensus 158 ~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 158 IEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTV 216 (297)
T ss_dssp ------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCC
T ss_pred ccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCC
Confidence 34 4444445677888887643211 111111 111235678888875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.094 Score=45.53 Aligned_cols=131 Identities=12% Similarity=0.049 Sum_probs=67.5
Q ss_pred CCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 112 PHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
..+.|..+|..+++..... ........+.+ +++.++.+. ..+.|..||+...+ ....+. ........+.. +
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~--~ 328 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGN--CIHTLT-GHQSLTSGMEL--K 328 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCC--EEEEEC-CCCSCEEEEEE--E
T ss_pred CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCC--EEEEEc-CCcccEEEEEE--e
Confidence 3456777777656543322 22223344554 677666665 45779999975432 111221 11112333444 3
Q ss_pred CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEeCC
Q 023085 191 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDN 269 (287)
Q Consensus 191 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g 269 (287)
+++.++... .+.|..++. .++.+..+..+... ...+.++..++.
T Consensus 329 ~~~l~~~~~----------------------------------dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 373 (445)
T 2ovr_B 329 DNILVSGNA----------------------------------DSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKN 373 (445)
T ss_dssp TTEEEEEET----------------------------------TSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSS
T ss_pred CCEEEEEeC----------------------------------CCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEECCC
Confidence 444444433 246667775 46677776643221 234666666554
Q ss_pred EEEEEecCCCeEEEEeC
Q 023085 270 HLYVISLTSNFIGKVQL 286 (287)
Q Consensus 270 ~l~i~~~~~~~i~~~~~ 286 (287)
.|..+ ...+.|.++++
T Consensus 374 ~l~s~-~~dg~v~iwd~ 389 (445)
T 2ovr_B 374 FVITS-SDDGTVKLWDL 389 (445)
T ss_dssp EEEEE-ETTSEEEEEET
T ss_pred EEEEE-eCCCeEEEEEC
Confidence 44444 45567777765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.08 Score=44.69 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=51.3
Q ss_pred CCCceEEEEeCCCCe-----------------eEEeeccccccceEEEccCCCEEEEEeCCCCE-EEEEEecCCCCccee
Q 023085 111 KPHGQLLKYDPSSNI-----------------TTLVADGFYFANGVALSRDEDYVVVCESWKFR-CRKYWLKGERKGKLE 172 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~-l~~~~~~~~~~~~~~ 172 (287)
...+.|..+|..++. +..+.........++++|+++.|..+. ..+. |..||+...+ ...
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d~~~v~iwd~~~~~--~~~ 232 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QDGTIIRVFKTEDGV--LVR 232 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TTCSEEEEEETTTCC--EEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CCCCEEEEEECCCCc--EEE
Confidence 445678888876544 333333344567889999998655554 4566 8888875432 122
Q ss_pred EEecc-CCCCCcceeeCCCCCEEEEEec
Q 023085 173 TFAEN-LPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 173 ~~~~~-~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+... -.+....+++.++|++.++...
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~ 260 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSD 260 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence 23211 2234667889999987666544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.072 Score=44.09 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=48.5
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEE---EEeeCCccccCeEECC--CCcEE-EEeCCCceEEEc-cCC-cEEEeeec
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVN---WKFIDSQTLVGLTSTK--EGHLI-ICDNANGLHKVS-EDG-VENFLSYV 70 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~---~~~~~~~~~~~i~~d~--dg~l~-v~~~~~gi~~~~-~~g-~~~~~~~~ 70 (287)
+++|. |..++.++.|..|+ ++.... +........ .+++.+ +++++ .+...+.|...+ +++ ........
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~ 100 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA 100 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc
Confidence 45664 55666888888888 443222 222222334 777764 36544 444445577777 555 33332211
Q ss_pred CCccccccceEEEcCC--CcEEEE
Q 023085 71 NGSKLRFANDVVEASD--GSLYFT 92 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~--g~l~v~ 92 (287)
+ ....++++++.++ |.++++
T Consensus 101 -~-h~~~V~~v~~~p~~~g~~las 122 (316)
T 3bg1_A 101 -G-HDSSVNSVCWAPHDYGLILAC 122 (316)
T ss_dssp -C-CSSCCCEEEECCTTTCSCEEE
T ss_pred -C-CCCceEEEEECCCCCCcEEEE
Confidence 1 1235788888876 666664
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.065 Score=44.64 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=68.7
Q ss_pred ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee
Q 023085 54 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 54 gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 130 (287)
.|+.++ .++ ...+ ..+..+++.++|. |.++... .......|+.++..+++...+.
T Consensus 44 ~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~-------------~~~~~~~l~~~~~~~g~~~~l~ 101 (347)
T 2gop_A 44 TIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRAN-------------EEKKVSEIWVADLETLSSKKIL 101 (347)
T ss_dssp EEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEE-------------TTTTEEEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEec-------------cCCCcceEEEEECCCCceEEEE
Confidence 467777 445 4443 2456778999986 4332100 0012346999998877766554
Q ss_pred ccccccceEEEccCCCEEEEEeCC--------------------------CCEEEEEEecCCCCcceeEEeccCCCCCcc
Q 023085 131 DGFYFANGVALSRDEDYVVVCESW--------------------------KFRCRKYWLKGERKGKLETFAENLPGAPDN 184 (287)
Q Consensus 131 ~~~~~~~~i~~~~~~~~l~v~~~~--------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
.... ...++++||++.|+++... ...|+++++++++. ...+.. + ....
T Consensus 102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~--~-~~~~ 175 (347)
T 2gop_A 102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK--P-RFSS 175 (347)
T ss_dssp EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE--EEEEEE--E-TTCE
T ss_pred cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC--C-Cccc
Confidence 3333 6778899999988777532 24688888754321 022221 2 4567
Q ss_pred eeeCCCCCEEEEEe
Q 023085 185 INLAPDGTFWIAII 198 (287)
Q Consensus 185 i~~d~~G~lwv~~~ 198 (287)
+++.++| +.++..
T Consensus 176 ~~~spdg-~~~~~~ 188 (347)
T 2gop_A 176 GIWHRDK-IVVNVP 188 (347)
T ss_dssp EEEETTE-EEEEEE
T ss_pred ccCCCCe-EEEEEe
Confidence 7888888 665553
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.082 Score=44.01 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=69.4
Q ss_pred CeEECCC---CcEEEE-eCCCceEEEc-cC-C-cE-EEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeee
Q 023085 37 GLTSTKE---GHLIIC-DNANGLHKVS-ED-G-VE-NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 108 (287)
Q Consensus 37 ~i~~d~d---g~l~v~-~~~~gi~~~~-~~-g-~~-~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~ 108 (287)
.+++.++ |++.++ ...+.|..++ .+ + .. ..... ....+.++++.+++..+++.
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~--------------- 104 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM----HTGPVLDVCWSDDGSKVFTA--------------- 104 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE----CSSCEEEEEECTTSSEEEEE---------------
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc----ccCCEEEEEECcCCCEEEEE---------------
Confidence 7889998 565444 4444566677 54 4 22 22111 12467889999999876652
Q ss_pred ccCCCceEEEEeCCCCeeEEeeccccccceEEE--ccCCCEEEEEeCCCCEEEEEEecC
Q 023085 109 EGKPHGQLLKYDPSSNITTLVADGFYFANGVAL--SRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 109 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
..++.|..+|..+++.............+++ +++++.++.+. ..+.|..|++..
T Consensus 105 --~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 160 (368)
T 3mmy_A 105 --SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS-WDKTLKFWDTRS 160 (368)
T ss_dssp --ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEE-TTSEEEEECSSC
T ss_pred --cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEcc-CCCcEEEEECCC
Confidence 2356788889887776655444455677888 78887555554 467899998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0075 Score=52.60 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=59.7
Q ss_pred ccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee---ccccccceEEEcc-CCCEEEEE
Q 023085 77 FANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSR-DEDYVVVC 151 (287)
Q Consensus 77 ~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~~~~-~~~~l~v~ 151 (287)
.+++|++++ ++++.++ +..++.|..+|..+++..... ........++|+| +++. +++
T Consensus 121 ~V~~l~~~P~~~~~las-----------------Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~-l~s 182 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAV-----------------GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ-FYA 182 (435)
T ss_dssp CEEEEEECSSCTTCEEE-----------------EETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTE-EEE
T ss_pred CEEEEEEeCCCCCEEEE-----------------EeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCE-EEE
Confidence 477888887 4555553 234567777876655432222 2334567899998 5664 445
Q ss_pred eCCCCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCCEEEEEec
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+..+.|..||+.+. ....+... .......++++++|++.++...
T Consensus 183 ~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 229 (435)
T 4e54_B 183 SSMEGTTRLQDFKGN---ILRVFASSDTINIWFCSLDVSASSRMVVTGDN 229 (435)
T ss_dssp ECSSSCEEEEETTSC---EEEEEECCSSCSCCCCCEEEETTTTEEEEECS
T ss_pred EeCCCEEEEeeccCC---ceeEEeccCCCCccEEEEEECCCCCEEEEEeC
Confidence 556678989987542 22222211 1123456778888876665544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.18 Score=46.81 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCc-----cccCeEECCCCcEEEEeCC------CceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----TLVGLTSTKEGHLIICDNA------NGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~-----~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g 62 (287)
++.||+++.++.|+.+| +|+.......... ......+ .++.++++... ..|+.+| .+|
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCC
Confidence 56899999999999999 6765433322111 1102222 26788887542 3489999 778
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.16 Score=46.39 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=60.7
Q ss_pred CCcEEEEec-CCeEEEEE---CCceEEEEeeCCc-----------cccCeEEC-CCCc----EEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATR-DGWIKRLQ---DGTWVNWKFIDSQ-----------TLVGLTST-KEGH----LIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~-~g~i~~~~---~~~~~~~~~~~~~-----------~~~~i~~d-~dg~----l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++. ++.|+.++ +|+.......... ...++++. .+++ ||+++....|+.+| .+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 578999997 78999998 3554322222110 11256663 2556 99998666799999 788
Q ss_pred cEEEeeecCCc-cccccc-eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE
Q 023085 63 VENFLSYVNGS-KLRFAN-DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128 (287)
Q Consensus 63 ~~~~~~~~~~~-~~~~~~-~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 128 (287)
........... ....+. .-.+. +|.+++.....++ ...+.|+.+|.++|+...
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGG------------TCCCEEEEEETTTCCEEE
T ss_pred CEEEeecCCCCCccceeecCCEEE-CCEEEEEeccccc------------CCCCeEEEEECCCCcEEE
Confidence 22222111110 000111 11122 5778885322111 024678888888777654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.13 Score=48.17 Aligned_cols=164 Identities=13% Similarity=0.009 Sum_probs=85.4
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
...++++.+||+..+.... ..+.....|+.+|..+++............+++|+|| +.|+++.....
T Consensus 164 ~~~~~~~SPDG~~la~~~~------------~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~ 230 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQ------------DGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEP 230 (741)
T ss_dssp EEEEEEECTTSSEEEEEEE------------ETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC
T ss_pred EEEeEEECCCCCEEEEEEc------------CCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCc
Confidence 4567888999974432100 0011124699999988876433111111257889999 88888764332
Q ss_pred -------------EEEEEEecCCCCcceeEEeccC-CCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhC
Q 023085 157 -------------RCRKYWLKGERKGKLETFAENL-PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY 221 (287)
Q Consensus 157 -------------~l~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (287)
.|+++++.++.......+.... +....++.+++||+ |.++....
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--------------------- 289 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG--------------------- 289 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT---------------------
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc---------------------
Confidence 4888886543211122222111 11234577888996 44444331
Q ss_pred CccccccccCCCceEEEEECCCCc--E-EEEEECCCCccccceEEEEEeCCEEEEEecC---CCeEEEEeC
Q 023085 222 PKLFSQFITLGGGAHLIHVAEDGT--I-IRNLVDPTGQLMSFVTSGLQVDNHLYVISLT---SNFIGKVQL 286 (287)
Q Consensus 222 ~~~~~~~~~~~~~~~v~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~---~~~i~~~~~ 286 (287)
......|+.++.++. . ...+...... ....+..+++.||+.+.. ...|.++++
T Consensus 290 ---------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 290 ---------TDPVNTVHVARVTNGKIGPVTALIPDLKA---QWDFVDGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp ---------TCSCCEEEEEEEETTEECCCEEEECSSSS---CEEEEEEETTEEEEEECTTCTTCEEEEEEC
T ss_pred ---------CCCcceEEEEECCCCCCcccEEecCCCCc---eEEEEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 001236666665433 2 4444432221 122233567788887754 335777665
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.13 Score=44.35 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=61.4
Q ss_pred ECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCce
Q 023085 40 STKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ 115 (287)
Q Consensus 40 ~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 115 (287)
..+++++.++ ...+.|..++ +++ ...+... .....+.++++++++.+.++. ..++.
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~-----------------~~dg~ 237 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILG-----------------TTRGI 237 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEE-----------------ETTSC
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEE-----------------cCCCe
Confidence 3467765444 4445677788 666 3333211 122467889999999877752 23567
Q ss_pred EEEEeCCCCeeEEee--ccccccceEEEc----cCCCEEEEEeCCCCEEEEEEecC
Q 023085 116 LLKYDPSSNITTLVA--DGFYFANGVALS----RDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 116 v~~~~~~~~~~~~~~--~~~~~~~~i~~~----~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
|..+|..+++..... ........+++. +++. +.++....+.|..||+..
T Consensus 238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 238 IDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp EEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred EEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence 888888766643322 222334566454 3454 444445566788888753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.14 Score=44.37 Aligned_cols=208 Identities=11% Similarity=0.052 Sum_probs=107.0
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcE-EEEeCCCceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
.|..|+.+|.|..|+ +++..........++..+.+ ++++ +.+...+.|..++ .++ ...+.. ....+.
T Consensus 145 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~ 217 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----HCEAVL 217 (435)
T ss_dssp EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC-----CCSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-----CCCcEE
Confidence 466777889999999 44443332222222214554 5654 4445445577788 666 333321 123456
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE----EeeccccccceEEEccCCCEEEEEeCCC
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT----LVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
++.++ +...++ +..++.|..+|..+++.. ...........+.+ +++.++.+. ..
T Consensus 218 ~l~~~--~~~l~s-----------------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~d 275 (435)
T 1p22_A 218 HLRFN--NGMMVT-----------------CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-GD 275 (435)
T ss_dssp EEECC--TTEEEE-----------------EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-TT
T ss_pred EEEEc--CCEEEE-----------------eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-CC
Confidence 66665 334443 223456777776654422 11122223344554 577666665 46
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 235 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (287)
+.|..||+...+ ....+. ........+.++ +++.++... .+
T Consensus 276 g~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~--~~~l~~g~~----------------------------------dg 316 (435)
T 1p22_A 276 RTIKVWNTSTCE--FVRTLN-GHKRGIACLQYR--DRLVVSGSS----------------------------------DN 316 (435)
T ss_dssp SEEEEEETTTCC--EEEEEE-CCSSCEEEEEEE--TTEEEEEET----------------------------------TS
T ss_pred CeEEEEECCcCc--EEEEEc-CCCCcEEEEEeC--CCEEEEEeC----------------------------------CC
Confidence 789999975432 122222 111223345553 444444433 24
Q ss_pred EEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 236 HLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 236 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.|..+|.+ ++.+..+.... ..+.++..++..|..++ ..+.|.++|+
T Consensus 317 ~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~sg~-~dg~i~vwd~ 363 (435)
T 1p22_A 317 TIRLWDIECGACLRVLEGHE----ELVRCIRFDNKRIVSGA-YDGKIKVWDL 363 (435)
T ss_dssp CEEEEETTTCCEEEEECCCS----SCEEEEECCSSEEEEEE-TTSCEEEEEH
T ss_pred eEEEEECCCCCEEEEEeCCc----CcEEEEEecCCEEEEEe-CCCcEEEEEC
Confidence 67777754 66666665432 24566666555555555 4456766654
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.01 Score=53.91 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=50.7
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc--ccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|..|++++.|+|||+..+..-....+ .......++.+++.++++.+++.. .....|++|+||+++||+.-
T Consensus 475 f~~PDNL~fd~~G~LwI~eDg~~~~~~~~-----~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDF-----AGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGG-----TTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred ccCCcceEECCCCCEEEEecCCCcccccc-----cccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 56789999999999999854421110000 112345788899988998887643 23456899999999998874
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.04 Score=53.07 Aligned_cols=141 Identities=6% Similarity=-0.023 Sum_probs=84.1
Q ss_pred Cc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcE-EEEeCCCceEEEc-cCC-cEEEee-------ecC
Q 023085 5 GV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG-VENFLS-------YVN 71 (287)
Q Consensus 5 G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~g-~~~~~~-------~~~ 71 (287)
|. |..++.++.|..|+ +++............ .++++++++. +++...+.|..++ +++ ...+.. ...
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence 44 66667889999999 444332222233334 7889999964 5555445577787 555 433221 001
Q ss_pred CccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-c-----------------
Q 023085 72 GSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G----------------- 132 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~----------------- 132 (287)
......+.++++++++ .+.++ +...+.| .+|.++++...... .
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~-----------------g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLI-----------------SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEE-----------------ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ccCCCCeEEEEEccCCCCEEEE-----------------EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 1123467889999863 44443 2235667 88887666433221 1
Q ss_pred -ccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 133 -FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 133 -~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
......++|+|+++.|..+. ..+.|..||...
T Consensus 210 h~~~V~~v~fspdg~~lasgs-~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 210 RTPKVIQSLYHPNSLHIITIH-EDNSLVFWDANS 242 (902)
T ss_dssp BCCCEEEEEECTTSSEEEEEE-TTCCEEEEETTT
T ss_pred cCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Confidence 12356789999998655554 467788998754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.11 Score=42.42 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=87.2
Q ss_pred Cc-EEEEecCCeEEEEE--CCceEE---EEeeCCccccCeEECCC--CcEEE-EeCCCceEEEc-cCC--cEEEeeecCC
Q 023085 5 GV-IYTATRDGWIKRLQ--DGTWVN---WKFIDSQTLVGLTSTKE--GHLII-CDNANGLHKVS-EDG--VENFLSYVNG 72 (287)
Q Consensus 5 G~-l~~~~~~g~i~~~~--~~~~~~---~~~~~~~~~~~i~~d~d--g~l~v-~~~~~gi~~~~-~~g--~~~~~~~~~~ 72 (287)
|. |..++.++.|..|+ +++... +........ .+++.++ |.+.+ +...+.|..++ +++ ....... +
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~--~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID--A 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE--C
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee--c
Confidence 53 55666888888888 443222 111122233 7788876 65544 44444466666 433 2111110 0
Q ss_pred ccccccceEEEcCC-------------CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe----e-EEeecccc
Q 023085 73 SKLRFANDVVEASD-------------GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----T-TLVADGFY 134 (287)
Q Consensus 73 ~~~~~~~~l~~d~~-------------g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~-~~~~~~~~ 134 (287)
....++.+++.++ +.++++ +..++.|..+|..+++ . ..+.....
T Consensus 144 -h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s-----------------gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 144 -HAIGVNSASWAPATIEEDGEHNGTKESRKFVT-----------------GGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp -CSSCEEEEEECCCC------------CCEEEE-----------------EETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred -ccCccceEeecCCcccccccCCCCCCcceEEE-----------------EcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 1124556666664 344443 1223445545443222 1 12222334
Q ss_pred ccceEEEccCC--CEEEEEeCCCCEEEEEEecCCCCcceeEEe--ccCCCCCcceeeCCCCCEEEEEec
Q 023085 135 FANGVALSRDE--DYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 135 ~~~~i~~~~~~--~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
....++|+|++ ..++++.+..+.|..|+.+........... .........+++.++|++.++...
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 56788999985 335555556678888987643211111111 111223456778888876655543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.25 Score=45.94 Aligned_cols=162 Identities=10% Similarity=0.005 Sum_probs=87.5
Q ss_pred ccceEEEcCCCcEEE--EcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 77 FANDVVEASDGSLYF--TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
.+.++++.+||+..+ .+.. +.....|+.+|..+++............+++|+ |++.|+++...
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence 456778999997433 2222 112247899999888754332111113567899 99988887654
Q ss_pred C------------CEEEEEEecCCCCcceeEEeccC--CCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHH
Q 023085 155 K------------FRCRKYWLKGERKGKLETFAENL--PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLA 219 (287)
Q Consensus 155 ~------------~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~ 219 (287)
. ..|+++++..+.......+.... +....++..++||+ |.++...
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-------------------- 254 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN-------------------- 254 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES--------------------
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc--------------------
Confidence 2 45888887543222222222111 11123566788886 4444433
Q ss_pred hCCccccccccCCCceEEEEECCCCc--EEEEEECCCCccccceEEEEEeCCEEEEEecCC---CeEEEEeCC
Q 023085 220 AYPKLFSQFITLGGGAHLIHVAEDGT--IIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS---NFIGKVQLS 287 (287)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~---~~i~~~~~~ 287 (287)
......|+.++.++. ....+...... ....+..+++.||+.+..+ ..|.+++++
T Consensus 255 -----------~~~~~~i~~~d~~~~~~~~~~l~~~~~~---~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~ 313 (693)
T 3iuj_A 255 -----------STSGNRLYVKDLSQENAPLLTVQGDLDA---DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAA 313 (693)
T ss_dssp -----------SSSCCEEEEEETTSTTCCCEEEECSSSS---CEEEEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred -----------CCCCcEEEEEECCCCCCceEEEeCCCCc---eEEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 111236676664322 34444433221 1223445678888877653 578777763
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.021 Score=51.44 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=72.2
Q ss_pred ccceEEEccCCCEEEEEeCCC---------------------CEEEEEEecCCC----CcceeEEecc------------
Q 023085 135 FANGVALSRDEDYVVVCESWK---------------------FRCRKYWLKGER----KGKLETFAEN------------ 177 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~---------------------~~l~~~~~~~~~----~~~~~~~~~~------------ 177 (287)
.|.+++++|....+|++-+++ +.|+++..++.. ..+...+...
T Consensus 385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~ 464 (592)
T 4a9v_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence 467899999666699986532 579999875321 1122333210
Q ss_pred ---------CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEE
Q 023085 178 ---------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTII 247 (287)
Q Consensus 178 ---------~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~ 247 (287)
.-..|++|++|++|+||+++-..... ...+ .......+++++|+ |+..
T Consensus 465 g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~------------------~g~~----~~~gnn~v~~~dp~tGel~ 522 (592)
T 4a9v_A 465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSN------------------AGDF----AGMGNNQMLCADPATGEIR 522 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCC------------------SGGG----TTCCSCEEEEECTTTCCEE
T ss_pred CccCccccCccCCCCceEECCCCCEEEEeCCCcCc------------------cccc----cccCCceEEEEeCCCCeEE
Confidence 11358999999999999987652110 0000 01123589999996 6655
Q ss_pred EEEECCCCccccceEEEEEe--CCEEEEEecC
Q 023085 248 RNLVDPTGQLMSFVTSGLQV--DNHLYVISLT 277 (287)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~ 277 (287)
..+..+.+ ..++++++. +..|||+-..
T Consensus 523 ~fl~~P~~---aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 523 RFMVGPIG---CEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp EEEECCTT---CEEEEEEECTTSSEEEEEEES
T ss_pred EEEeCCCC---ccccCCEECCCCCEEEEEEeC
Confidence 55554543 356777775 5789998653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.26 Score=44.94 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=39.3
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCcc---------ccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT---------LVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~---------~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++..++|+.++ +|+........... ..++++ .+++||+++....|+.+| .+|
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG 137 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTG 137 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCC
Confidence 57899999766799999 67654332222110 114454 367999998777799999 788
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.11 Score=47.17 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=82.3
Q ss_pred CCCCc-EEEEecCCeEEEEE-CCceEEEEeeCCc-----cccCeEECCCCc-EEEEeCCCceEEEc-cCC-c-E----EE
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-DGTWVNWKFIDSQ-----TLVGLTSTKEGH-LIICDNANGLHKVS-EDG-V-E----NF 66 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~~~~~~~~~~~~~-----~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~-~----~~ 66 (287)
.++|. |-.++.+|.|..|+ ++...... ... ...++++.|||+ |+++...+.|..++ .++ . . .+
T Consensus 94 SPdG~~LAs~s~dg~V~iwd~~~~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l 171 (588)
T 2j04_A 94 SPIDDWMAVLSNNGNVSVFKDNKMLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE 171 (588)
T ss_dssp CSSSSCEEEEETTSCEEEEETTEEEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCceeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceee
Confidence 45674 66777888888898 44333322 221 133799999996 55556555577777 555 4 1 12
Q ss_pred ee---ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE----Eee-ccccccce
Q 023085 67 LS---YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT----LVA-DGFYFANG 138 (287)
Q Consensus 67 ~~---~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~-~~~~~~~~ 138 (287)
.. ...+ ....+.++++.++| +..+ ..++.+..++.++++.. .+. ..-.....
T Consensus 172 ~ti~~~~~g-h~~~V~sVawSPdg-Laas------------------s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 172 SSIRLSDAG-SKDWVTHIVWYEDV-LVAA------------------LSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEECSCTT-CCCCEEEEEEETTE-EEEE------------------ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred eeeeccccc-ccccEEEEEEcCCc-EEEE------------------eCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 11 1122 23578899999999 4442 23456777776655421 121 22245678
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
++|+ ++.|..+. .+.|..|+..+.
T Consensus 232 vaFs--g~~LASa~--~~tIkLWd~~~~ 255 (588)
T 2j04_A 232 LKIV--DYKVVLTC--PGYVHKIDLKNY 255 (588)
T ss_dssp EEEE--TTEEEEEC--SSEEEEEETTTT
T ss_pred EEEE--CCEEEEEe--CCeEEEEECCCC
Confidence 8888 56555553 478999997653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.28 Score=44.00 Aligned_cols=104 Identities=14% Similarity=-0.023 Sum_probs=58.3
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee--EEeeccccccceE--EEccCCCEEEEE
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGV--ALSRDEDYVVVC 151 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~i--~~~~~~~~l~v~ 151 (287)
..+.++++.+++.|.. +..++.|..+|..+++. ..+.........+ ++++++..++++
T Consensus 267 ~~v~sv~~s~~~~las------------------gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 267 SLITTFDFLSPTTVVC------------------GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp TCEEEEEESSSSEEEE------------------EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred CCEEEEEecCCCeEEE------------------EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence 3466777776554333 23457888888765431 2222233345566 456776235666
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCC-CCCcceeeCCCCCEEEEEec
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+..+.|..||+...+. ...+..... +....+++.+++..++++..
T Consensus 329 ~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~ 375 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG 375 (524)
T ss_dssp EETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECS
T ss_pred eccCCeEEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeCC
Confidence 66678899998754211 111211111 12456888898888776654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.27 Score=42.28 Aligned_cols=221 Identities=11% Similarity=-0.027 Sum_probs=109.4
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC---cEEEeeecCCc
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g---~~~~~~~~~~~ 73 (287)
.++| .|..|+.+|.|..|+ +++........... ...+..++++.++... ..+...+ ... ...+..
T Consensus 156 spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~--v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~----- 228 (420)
T 4gga_A 156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR--VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----- 228 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC-----
T ss_pred CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc--eEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc-----
Confidence 3556 455667788888888 44332222211111 2233345554444323 3455555 332 222211
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-----EEeeccccccceEEEccCCCEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-----TLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~l 148 (287)
....+..+...++|...++. ...+.+..++..+++. ............+++.|.+..+
T Consensus 229 h~~~~~~~~~~~~g~~l~s~-----------------~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred cccceeeeeecCCCCeeeee-----------------eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence 12345567777777766642 2244566666544331 1112222334567888876545
Q ss_pred EEEe--CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 149 VVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 149 ~v~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
+.+. +..+.|..||+.... ....+. .......+++.++++..+++...
T Consensus 292 la~~~gs~D~~I~iwd~~t~~--~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~-------------------------- 341 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGA--CLSAVD--AHSQVCSILWSPHYKELISGHGF-------------------------- 341 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTE--EEEEEE--CSSCEEEEEEETTTTEEEEEECT--------------------------
T ss_pred EEEEeecCCCEEEEEeCCccc--cceeec--cccceeeeeecCCCCeEEEEEec--------------------------
Confidence 4432 345678888875431 111121 12234556677777655554321
Q ss_pred ccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 227 QFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
..+.|..++. .++.+..+.... ..+.++... +|+..++.-.-..|.+.++
T Consensus 342 ------~d~~I~iwd~~~~~~v~~l~gH~----~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 342 ------AQNQLVIWKYPTMAKVAELKGHT----SRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ------TTCCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ------CCCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 0245666663 467777775433 246777775 5554444434445655554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.29 Score=42.15 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=77.2
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEee--CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
+.|-+| .++.|+.|+ +|+....... ....+..+++.++|++.++ ...+.|..++ .++ +..+... ..
T Consensus 117 n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h-----~~ 190 (420)
T 4gga_A 117 NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH-----SA 190 (420)
T ss_dssp SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SS
T ss_pred CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC-----CC
Confidence 334454 578899999 6766554332 2233338999999975544 5445577777 666 3333111 12
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
.+..+.. ++.+.++ +...+.+..++..... +..+.........+.+.++++.+.... .
T Consensus 191 ~v~~~s~--~~~~l~s-----------------gs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~-~ 250 (420)
T 4gga_A 191 RVGSLSW--NSYILSS-----------------GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-N 250 (420)
T ss_dssp CEEEEEE--ETTEEEE-----------------EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred ceEEEee--CCCEEEE-----------------EeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee-c
Confidence 3344443 4555554 2234567767654322 233333444566788899998665554 4
Q ss_pred CCEEEEEEecC
Q 023085 155 KFRCRKYWLKG 165 (287)
Q Consensus 155 ~~~l~~~~~~~ 165 (287)
.+.+..++...
T Consensus 251 D~~v~i~~~~~ 261 (420)
T 4gga_A 251 DNLVNVWPSAP 261 (420)
T ss_dssp TSCEEEEESSC
T ss_pred cccceEEeecc
Confidence 56788888754
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.071 Score=48.48 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred cccceEEEccCCCEEEEEeCCC---------------------CEEEEEEecCCCCc----ceeEEecc-----------
Q 023085 134 YFANGVALSRDEDYVVVCESWK---------------------FRCRKYWLKGERKG----KLETFAEN----------- 177 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~---------------------~~l~~~~~~~~~~~----~~~~~~~~----------- 177 (287)
..|.++.++|....+|++.+.+ +.|+++..+..... +...+...
T Consensus 384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~ 463 (592)
T 3zwu_A 384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK 463 (592)
T ss_dssp ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence 3468899998655699987632 46999987633211 11222100
Q ss_pred ----------CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcE
Q 023085 178 ----------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI 246 (287)
Q Consensus 178 ----------~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~ 246 (287)
.-..|+||++|++|+|||++-......-.+ .......+..+++. |+.
T Consensus 464 ~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~----------------------~~~gnn~~~~~~~~~g~~ 521 (592)
T 3zwu_A 464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDF----------------------AGMGNNQMLCADPATGEI 521 (592)
T ss_dssp GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGG----------------------TTTCSCEEEEECTTTCCE
T ss_pred ccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccc----------------------cccccceEEEEeCCCCeE
Confidence 113589999999999999997632110000 01123456667776 556
Q ss_pred EEEEECCCCccccceEEEEEe--CCEEEEEec
Q 023085 247 IRNLVDPTGQLMSFVTSGLQV--DNHLYVISL 276 (287)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~ 276 (287)
...+..|.+ ..++++++. +.+||+.-.
T Consensus 522 ~rf~~~P~g---aE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 522 RRFMVGPIG---CEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEECCTT---CEEEEEEECTTSSEEEEEEE
T ss_pred EEEEeCCCC---ccCcCeeECCCCCEEEEEEE
Confidence 666666654 467777775 467888744
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.43 Score=40.12 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=28.4
Q ss_pred EEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 237 LIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 237 v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
|..+|.+ ++.+..+.. +.....+.++... ++++.++.-....|.++++
T Consensus 220 v~iwd~~~~~~~~~~~~--g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRR--GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EEEEETTTCCEEEEEEC--TTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred EEEEECCCCcEEEEEEc--CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 5666654 667777662 1012356777775 5665555556677877776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.51 Score=38.81 Aligned_cols=173 Identities=10% Similarity=0.052 Sum_probs=85.6
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEe---eCCccccCeEECCC--CcEEEE-eCCCceEEEc-cCC-cEEEeeecCCccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKE--GHLIIC-DNANGLHKVS-EDG-VENFLSYVNGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~---~~~~~~~~i~~d~d--g~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~~ 75 (287)
.|..++.++.|..|+ ++....... ...... .+++.++ |.+.++ ...+.|..++ ..+ .........+ ..
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~-h~ 150 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA-HT 150 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS-SS
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc-cc
Confidence 466667888888888 443322221 222334 7888887 655444 3334455555 333 2221111111 11
Q ss_pred cccceEEEcCCC-----------------cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-ee---EEeecccc
Q 023085 76 RFANDVVEASDG-----------------SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-IT---TLVADGFY 134 (287)
Q Consensus 76 ~~~~~l~~d~~g-----------------~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~~~~~~~~ 134 (287)
..+..++..+++ .++++ +..++.|..+|..++ .. ..+.....
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----------------gs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS-----------------GGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEEC-----------------CBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred CCcceEEEccccCCccccccccccCccccceEEE-----------------ecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 234556666542 22332 223344444443322 11 22222234
Q ss_pred ccceEEEccCC----CEEEEEeCCCCEEEEEEecCCCCc--ceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 135 FANGVALSRDE----DYVVVCESWKFRCRKYWLKGERKG--KLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 135 ~~~~i~~~~~~----~~l~v~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
....++|+|++ + ++++.+..+.|..|+.+..... ....+. ........+++.++|++.++...
T Consensus 214 ~V~~v~~sp~~~~~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTS-TIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp CEEEEECCCCSSCSCC-EEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEES
T ss_pred ceEEEEecCCCCCCCc-eEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcC
Confidence 45778899986 4 4455556778989987642111 111111 12234567888888876555543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.79 Score=37.06 Aligned_cols=223 Identities=11% Similarity=-0.022 Sum_probs=105.4
Q ss_pred CCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCCcEEEeeecCCccccc
Q 023085 3 KNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDGVENFLSYVNGSKLRF 77 (287)
Q Consensus 3 ~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g~~~~~~~~~~~~~~~ 77 (287)
++|. |..|+.+|.|..|+ +++.......... . ......++++.++....+ +...+ ..+...+.... .....
T Consensus 77 ~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~-~-~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 152 (318)
T 4ggc_A 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-R-VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS--GHSQE 152 (318)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-C-EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE--CCSSC
T ss_pred CCCCEEEEEECCCcEEEeecCCceeEEEecCccc-e-EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc--CccCc
Confidence 4553 55666788888888 4443322222111 1 223344455444433334 33333 33311111111 01234
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-----eeccccccceEEEccCCCEE-EEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANGVALSRDEDYV-VVC 151 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~l-~v~ 151 (287)
+..+...+++.+.++. ...+.|..+|..+++... ..........+++.+++..+ +++
T Consensus 153 ~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 215 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215 (318)
T ss_dssp EEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred eEEEEEcCCCCEEEEE-----------------ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE
Confidence 5567777778766642 234567777765543211 11112233456667765444 333
Q ss_pred e-CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc
Q 023085 152 E-SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 230 (287)
Q Consensus 152 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
. ...+.|..++..... ..... ........+.+.+++...++....
T Consensus 216 ~~~~~~~i~lwd~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~------------------------------ 261 (318)
T 4ggc_A 216 GGTSDRHIRIWNVCSGA--CLSAV--DAHSQVCSILWSPHYKELISGHGF------------------------------ 261 (318)
T ss_dssp ECTTTCEEEEEETTTCC--EEEEE--ECSSCEEEEEEETTTTEEEEEECT------------------------------
T ss_pred ecCCCCEEEEEeccccc--ccccc--cceeeeeeeeecccccceEEEEEc------------------------------
Confidence 3 334567677754321 11111 111224456666666544433220
Q ss_pred CCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 231 LGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 231 ~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
..+.|..++. .++.+..+.... ..+.++... ++++.++.-.-..|.+.|+
T Consensus 262 --~d~~i~iwd~~~~~~~~~l~gH~----~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 262 --AQNQLVIWKYPTMAKVAELKGHT----SRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp --TTCCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred --CCCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 1245666764 477777776433 357777775 5555454444456666654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.72 Score=42.49 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=38.5
Q ss_pred CCCcEEEEe--cCCeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCC-------CceEEEc-cCC-cEEE
Q 023085 3 KNGVIYTAT--RDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VENF 66 (287)
Q Consensus 3 ~~G~l~~~~--~~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~-------~gi~~~~-~~g-~~~~ 66 (287)
.+|.||+.- ....+.+|| +++++.....+. .-.+..+..++|+||+.... ..+.++| .++ ++.+
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 467888764 234688898 566655432221 11214556679999988531 2478888 556 6665
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=1.9 Score=40.79 Aligned_cols=139 Identities=9% Similarity=0.047 Sum_probs=73.0
Q ss_pred CCcEEEEecCCeEEEEE-CC-ceEEEEeeC------CccccCeEECCC--CcEEEEeCC------CceEEEccCC--cEE
Q 023085 4 NGVIYTATRDGWIKRLQ-DG-TWVNWKFID------SQTLVGLTSTKE--GHLIICDNA------NGLHKVSEDG--VEN 65 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~-~~~~~~~~~------~~~~~~i~~d~d--g~l~v~~~~------~gi~~~~~~g--~~~ 65 (287)
.+.+|+++..++|++-. .| .++...... ......|++++. +.+|++... .+|++-...| ++.
T Consensus 27 ~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~ 106 (789)
T 1sqj_A 27 KDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTI 106 (789)
T ss_dssp TTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEE
T ss_pred CCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCccee
Confidence 46899999889999988 44 344332211 112327888874 478998633 3566554445 555
Q ss_pred EeeecC-C--cc-ccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc------c
Q 023085 66 FLSYVN-G--SK-LRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------F 133 (287)
Q Consensus 66 ~~~~~~-~--~~-~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~ 133 (287)
+..... + .+ ...+..+++++. +.+|+.. ..+.|++-+-....++.+... .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~------------------~~~gl~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 107 YESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT------------------RTEGIWKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp EECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC------------------SSSCEEEESSTTSSCEEETTSCCCCSTT
T ss_pred ccCCcccCccCCCccceeEEEEcCCCCCEEEEEe------------------ccCCEEEECCCCcccCCCccCccccCCC
Confidence 532111 0 01 112456888763 4677742 234566654332234443211 0
Q ss_pred cccceEEEccC-CCEEEEEeCCCCEEEE
Q 023085 134 YFANGVALSRD-EDYVVVCESWKFRCRK 160 (287)
Q Consensus 134 ~~~~~i~~~~~-~~~l~v~~~~~~~l~~ 160 (287)
.....++++|. .+.+|++......|++
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred CCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence 12234566763 4568887653244554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.016 Score=49.53 Aligned_cols=129 Identities=11% Similarity=-0.045 Sum_probs=48.0
Q ss_pred CCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
..+.|+.+|.++|+....... .......+..+++ +|+..+..+.|+.+|.++++......+.... ......++..++
T Consensus 17 ~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~-~~~~sp~~~~~~ 93 (369)
T 2hz6_A 17 LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE-LVQASPCRSSDG 93 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHH-HHTTCSCC----
T ss_pred CCCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcc-ccccCceEecCC
Confidence 346799999888876543322 2222222334554 6676566778999997543211110010000 000111222356
Q ss_pred CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCE
Q 023085 192 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNH 270 (287)
Q Consensus 192 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~ 270 (287)
.|++++.. +.|+.+|++ |+.++.+..... ...+.+++.
T Consensus 94 ~v~~g~~d-----------------------------------g~v~a~D~~tG~~~w~~~~~~~------~~~~p~~~~ 132 (369)
T 2hz6_A 94 ILYMGKKQ-----------------------------------DIWYVIDLLTGEKQQTLSSAFA------DSLSPSTSL 132 (369)
T ss_dssp -CCCCEEE-----------------------------------EEEEEECCC----------------------------
T ss_pred EEEEEeCC-----------------------------------CEEEEEECCCCcEEEEecCCCc------ccccccCCE
Confidence 78777654 578888875 777777654321 112225667
Q ss_pred EEEEecCCCeEEEEe
Q 023085 271 LYVISLTSNFIGKVQ 285 (287)
Q Consensus 271 l~i~~~~~~~i~~~~ 285 (287)
||+++.. ..|..+|
T Consensus 133 v~~~~~d-g~v~a~d 146 (369)
T 2hz6_A 133 LYLGRTE-YTITMYD 146 (369)
T ss_dssp EEEEEEE-EEEECCC
T ss_pred EEEEecC-CEEEEEE
Confidence 7776532 3344443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=94.29 E-value=2.4 Score=36.74 Aligned_cols=109 Identities=10% Similarity=0.057 Sum_probs=61.0
Q ss_pred CeEECCC-CcEEEE-eCCCceEEEc-cCCcEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKE-GHLIIC-DNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~d-g~l~v~-~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.+++.++ ++++++ ...+.|..+| +++....... + ....+.+++++++|..+++ +..+
T Consensus 154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~--~-~~~~v~~v~wspdg~~las-----------------gs~d 213 (434)
T 2oit_A 154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL--P-STVAVTSVCWSPKGKQLAV-----------------GKQN 213 (434)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE--C-GGGCEEEEEECTTSSCEEE-----------------EETT
T ss_pred EEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc--C-CCCceeEEEEcCCCCEEEE-----------------EcCC
Confidence 7889987 666554 4445577777 6661111111 1 1246788999999976654 2235
Q ss_pred ceEEEEeCCCCeeEEeeccc-------cccceEEEccCCCEEEEEeCCC------CEEEEEEecC
Q 023085 114 GQLLKYDPSSNITTLVADGF-------YFANGVALSRDEDYVVVCESWK------FRCRKYWLKG 165 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~l~v~~~~~------~~l~~~~~~~ 165 (287)
+.|..+|.+......+.... .....+.+++++..+....... ..+..+++..
T Consensus 214 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 214 GTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp SCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred CcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 67888888722232222211 1345677888775444444332 2366777653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.13 E-value=3.3 Score=38.78 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=56.4
Q ss_pred cceEEEc-CCCc-EEEE-cCCCCCCCcceeeeeeccCCCceEEEEeCCCC-eeEEeecccc-ccceEEEccCCCEEEEEe
Q 023085 78 ANDVVEA-SDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFY-FANGVALSRDEDYVVVCE 152 (287)
Q Consensus 78 ~~~l~~d-~~g~-l~v~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~-~~~~i~~~~~~~~l~v~~ 152 (287)
.....++ +||+ |.++ +.. +.....|+.+|..++ +.. ...+. ...+++|+||++.|+++.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~--------------G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~WspDg~~l~y~~ 239 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMS--------------GNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVWGPDHTSLFYVT 239 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESS--------------SSSCEEEEEEETTCTTCCC--CCCEEEECSCCEECSSTTEEEEEE
T ss_pred EeeeEecCCCCCEEEEEEeCC--------------CCceEEEEEEECCCCCEeC--CccccCceeeEEEecCCCEEEEEE
Confidence 4567888 8986 3332 211 112246999998877 521 11111 135688999998777765
Q ss_pred CCC----CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEe
Q 023085 153 SWK----FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 198 (287)
Q Consensus 153 ~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~ 198 (287)
... ..|+++++.++.......+.........++.+.+||+ |.+...
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 290 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ 290 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence 422 3688888754322212222211111223456778886 444443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.60 E-value=2.3 Score=34.16 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=72.1
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
++.|-+| .++.|..|+ +++....... ....+..+++.++|++.++... +.|...+ +++ +..+... .
T Consensus 36 ~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h-~---- 109 (318)
T 4ggc_A 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH-S---- 109 (318)
T ss_dssp TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-S----
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCc-c----
Confidence 3434344 577899999 6665544332 1222337899999986655434 4466667 666 3333211 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEeeccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..+. ....++.+.++. ...+.+..++..... +............+.+.++++.+..+.
T Consensus 110 ~~~~--~~~~~~~~l~s~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~- 169 (318)
T 4ggc_A 110 ARVG--SLSWNSYILSSG-----------------SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG- 169 (318)
T ss_dssp SCEE--EEEEETTEEEEE-----------------ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-
T ss_pred ceEE--EeecCCCEEEEE-----------------ecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe-
Confidence 1222 233345555431 123444445443222 222233334456677888888665554
Q ss_pred CCCEEEEEEecC
Q 023085 154 WKFRCRKYWLKG 165 (287)
Q Consensus 154 ~~~~l~~~~~~~ 165 (287)
..+.|..||+..
T Consensus 170 ~d~~i~iwd~~~ 181 (318)
T 4ggc_A 170 NDNLVNVWPSAP 181 (318)
T ss_dssp TTSCEEEEESSC
T ss_pred cCcceeEEECCC
Confidence 457788898764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.44 Score=40.14 Aligned_cols=110 Identities=9% Similarity=0.076 Sum_probs=58.8
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeC-CccccC---eEECCCCcEEEEe--CCCceEEEc-cCCcEEEeeecCCc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFID-SQTLVG---LTSTKEGHLIICD--NANGLHKVS-EDGVENFLSYVNGS 73 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~-~~~~~~---i~~d~dg~l~v~~--~~~gi~~~~-~~g~~~~~~~~~~~ 73 (287)
.+|.+|+++.+|.|+.++ +|+........ ..|... -+...++.+|+.. ..+.|+.++ .+|...+.......
T Consensus 9 ~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 9 LSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 357899999999999999 67654433332 011101 0011245677664 234578888 56633332221111
Q ss_pred cccccce----EEE------cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee
Q 023085 74 KLRFAND----VVE------ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 74 ~~~~~~~----l~~------d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 130 (287)
-..+|.. .++ ..+|.+|+. ...+.++.+|..+|+.....
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~G------------------s~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTG------------------SMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEEC------------------EEEEEEEEEETTTCCEEEEE
T ss_pred eeccccccCCCceeecccccccCCEEEEE------------------ecCCEEEEEECCCCcEEEEE
Confidence 0111111 112 146778883 34578999999888876543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=92.25 E-value=4.7 Score=34.05 Aligned_cols=38 Identities=5% Similarity=-0.136 Sum_probs=23.9
Q ss_pred CCceEEEEeCCCCeeEE-eecc---ccccceEEEccCCCEEE
Q 023085 112 PHGQLLKYDPSSNITTL-VADG---FYFANGVALSRDEDYVV 149 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~-~~~~---~~~~~~i~~~~~~~~l~ 149 (287)
.++.|..+|.++++... +... ......++|+|+++.+.
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence 46788889998887543 3221 22334567999987554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.01 E-value=4.2 Score=32.98 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=112.3
Q ss_pred CcEEE-Ee--cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeC-----CCceEEEc-cCC-cEEEeeecCC
Q 023085 5 GVIYT-AT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDN-----ANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 5 G~l~~-~~--~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~-----~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
+.||+ |- ....+.+|+ ++++......+......-+..-+++||+... ...+++++ .++ ++.+....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-- 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP-- 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS--
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC--
Confidence 44554 32 235788899 5666655432221110112223678887742 13588899 566 66664321
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEE
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVV 150 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v 150 (287)
.+... ..++. -++.||+..... ........++++|+.+++++.+.... ......+. .++ .||+
T Consensus 90 ~~r~~-~~~~~-~~~~iyv~GG~~-----------~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv 154 (306)
T 3ii7_A 90 TPRDS-LAACA-AEGKIYTSGGSE-----------VGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANG-LIYV 154 (306)
T ss_dssp SCCBS-CEEEE-ETTEEEEECCBB-----------TTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT-EEEE
T ss_pred ccccc-eeEEE-ECCEEEEECCCC-----------CCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECC-EEEE
Confidence 11112 22222 267888852110 00112346999999988887764321 11122332 234 4777
Q ss_pred EeCC---------CCEEEEEEecCCCCcceeEEeccCCCCC-cceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHh
Q 023085 151 CESW---------KFRCRKYWLKGERKGKLETFAENLPGAP-DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 220 (287)
Q Consensus 151 ~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (287)
..-. .+.+++||+...+ ............ ..++. -+++||+......
T Consensus 155 ~GG~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~------------------- 211 (306)
T 3ii7_A 155 CGGSLGNNVSGRVLNSCEVYDPATET---WTELCPMIEARKNHGLVF-VKDKIFAVGGQNG------------------- 211 (306)
T ss_dssp ECCEESCTTTCEECCCEEEEETTTTE---EEEECCCSSCCBSCEEEE-ETTEEEEECCEET-------------------
T ss_pred ECCCCCCCCcccccceEEEeCCCCCe---EEECCCccchhhcceEEE-ECCEEEEEeCCCC-------------------
Confidence 6421 3458888875432 222211111111 12222 2667888764310
Q ss_pred CCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEe-c----CCCeEEEEeC
Q 023085 221 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS-L----TSNFIGKVQL 286 (287)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~-~----~~~~i~~~~~ 286 (287)
......+.+||++.+.-..+..... ......++..+++||+-+ . ..+.|.+||+
T Consensus 212 ----------~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 212 ----------LGGLDNVEYYDIKLNEWKMVSPMPW--KGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp ----------TEEBCCEEEEETTTTEEEECCCCSC--CBSCCEEEEETTEEEEEECBCSSSBCCEEEEEET
T ss_pred ----------CCCCceEEEeeCCCCcEEECCCCCC--CccceeEEEECCEEEEEeCcCCCeeeeeEEEEcC
Confidence 0002367889988766555432111 112233444578888754 2 2246777775
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.72 E-value=5.1 Score=33.33 Aligned_cols=85 Identities=15% Similarity=0.211 Sum_probs=44.0
Q ss_pred CCcEEEEe--cCCeEEEEE-C---CceEEEEeeCCcc--ccCeEECCCCcEEEEeCC-----------CceEEEc-cCC-
Q 023085 4 NGVIYTAT--RDGWIKRLQ-D---GTWVNWKFIDSQT--LVGLTSTKEGHLIICDNA-----------NGLHKVS-EDG- 62 (287)
Q Consensus 4 ~G~l~~~~--~~g~i~~~~-~---~~~~~~~~~~~~~--~~~i~~d~dg~l~v~~~~-----------~gi~~~~-~~g- 62 (287)
++.||+.- ....+++|+ . .++......+..+ .++.+. -+++||+.... ..++++| .+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 46677653 345788998 3 5555544333112 112222 36788886321 2478888 556
Q ss_pred cEEEeeecCCccccccceEEEcCCCcEEEE
Q 023085 63 VENFLSYVNGSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~ 92 (287)
++.+.... ..+ ..-..+++ -++.||+.
T Consensus 98 W~~~~~~~-p~~-r~~~~~~~-~~~~iyv~ 124 (357)
T 2uvk_A 98 WVKLMSHA-PMG-MAGHVTFV-HNGKAYVT 124 (357)
T ss_dssp EEECSCCC-SSC-CSSEEEEE-ETTEEEEE
T ss_pred EEECCCCC-Ccc-cccceEEE-ECCEEEEE
Confidence 66654321 011 12122333 57889885
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=9.2 Score=35.45 Aligned_cols=146 Identities=10% Similarity=0.074 Sum_probs=80.7
Q ss_pred CCcEEEEec-----CCeEEEEE--CCceEEEE-e------eCCccccCeEECC-CCcEEEEeCC-------CceEEEc-c
Q 023085 4 NGVIYTATR-----DGWIKRLQ--DGTWVNWK-F------IDSQTLVGLTSTK-EGHLIICDNA-------NGLHKVS-E 60 (287)
Q Consensus 4 ~G~l~~~~~-----~g~i~~~~--~~~~~~~~-~------~~~~~~~~i~~d~-dg~l~v~~~~-------~gi~~~~-~ 60 (287)
++.||+... -..+++|+ ++++.... . +.....+..+... +|+||+.... ..++++| .
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 456665431 23588888 67777766 2 1111121344444 7889887321 2478898 5
Q ss_pred CC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc--cc---
Q 023085 61 DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FY--- 134 (287)
Q Consensus 61 ~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~--- 134 (287)
+. ++.+.... . ...-.+.++-.++.||+.... .....+++||+.++.++.+... ..
T Consensus 477 t~~W~~~~~~p--~-~R~~h~~~~~~~~~iyv~GG~---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 538 (695)
T 2zwa_A 477 TREWSMIKSLS--H-TRFRHSACSLPDGNVLILGGV---------------TEGPAMLLYNVTEEIFKDVTPKDEFFQNS 538 (695)
T ss_dssp TTEEEECCCCS--B-CCBSCEEEECTTSCEEEECCB---------------CSSCSEEEEETTTTEEEECCCSSGGGGSC
T ss_pred CCcEEECCCCC--C-CcccceEEEEcCCEEEEECCC---------------CCCCCEEEEECCCCceEEccCCCCCCCcc
Confidence 55 66653221 1 122233444347899995211 0111699999998888876532 11
Q ss_pred ccce-EEEccCCCEEEEEeCC-------CCEEEEEEecCCC
Q 023085 135 FANG-VALSRDEDYVVVCESW-------KFRCRKYWLKGER 167 (287)
Q Consensus 135 ~~~~-i~~~~~~~~l~v~~~~-------~~~l~~~~~~~~~ 167 (287)
.... ++++.+.+.||+..-. .+.+++||+...+
T Consensus 539 ~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 539 LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1123 4555553458877522 2469999987543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=89.84 E-value=8.2 Score=32.56 Aligned_cols=183 Identities=10% Similarity=-0.030 Sum_probs=85.4
Q ss_pred CCcEEEEe---cCCeEEEEE---CCceEEE-EeeCCccccCeEECC---CCcEEEEeCC-CceEEEc-cCC--cEEEeee
Q 023085 4 NGVIYTAT---RDGWIKRLQ---DGTWVNW-KFIDSQTLVGLTSTK---EGHLIICDNA-NGLHKVS-EDG--VENFLSY 69 (287)
Q Consensus 4 ~G~l~~~~---~~g~i~~~~---~~~~~~~-~~~~~~~~~~i~~d~---dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~ 69 (287)
+|++..++ .++.|..++ +|+...- ........ .+++.+ ++.+.++... +-|...| .+| +..+...
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~-~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~ 222 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEET-ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID 222 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSC-EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCcee-eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence 35555553 366676666 4544221 11122222 445554 6778877444 4466667 667 4555321
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec----cccccceEEEccCC
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD----GFYFANGVALSRDE 145 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~ 145 (287)
......+..+++.++|.+.++..... ..| .+..+...+.+..+++.+++...... ......-+..+..+
T Consensus 223 --~~~v~~v~~vafSpdG~~lvs~s~~~---~~w--~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg 295 (356)
T 2w18_A 223 --DSYQASVCHKAYSEMGLLFIVLSHPC---AKE--SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKD 295 (356)
T ss_dssp --C---CCCEEEEEEETTEEEEEEC-----------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEET
T ss_pred --CcceeeeEEEEECCCCCEEEEeccCC---Ccc--eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCC
Confidence 11123566678889998776532100 001 01112344567778888776433210 00000111112223
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCc-ceeeCCCCCEEEEEe
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD-NINLAPDGTFWIAII 198 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~d~~G~lwv~~~ 198 (287)
. +.++.+..+.|..+|+..++. ...+.... ..+. .+++.++|++.++..
T Consensus 296 ~-~lASgS~DgTIkIWDl~tGk~--l~tL~gH~-~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 296 H-CAAAILTSGTIAIWDLLLGQC--TALLPPVS-DQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp T-EEEEEETTSCEEEEETTTCSE--EEEECCC---CCCCEEEECSSSSEEEEEC
T ss_pred C-EEEEEcCCCcEEEEECCCCcE--EEEecCCC-CCeEEEEEECCCCCEEEEEE
Confidence 3 444544567888999764321 12221111 1123 378899998665554
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=89.44 E-value=14 Score=34.66 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=70.9
Q ss_pred CcEEEEecCCeEEEEE-CC-ceEEEEeeC-----------CccccCeEECC--CCcEEEEeC-------CCceEEEccCC
Q 023085 5 GVIYTATRDGWIKRLQ-DG-TWVNWKFID-----------SQTLVGLTSTK--EGHLIICDN-------ANGLHKVSEDG 62 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~~-~~~~~~~~~-----------~~~~~~i~~d~--dg~l~v~~~-------~~gi~~~~~~g 62 (287)
..+|+++..|+|++-. .| .++...... ......+++++ .+.+|++.. ..+|++-...|
T Consensus 34 ~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG 113 (763)
T 3a0f_A 34 DLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRG 113 (763)
T ss_dssp TCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTT
T ss_pred CEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCC
Confidence 5799999888999988 34 334332211 11122677887 358999864 24566654445
Q ss_pred --cEEEeeecC-C-c-c-ccccceEEEcC--CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-
Q 023085 63 --VENFLSYVN-G-S-K-LRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF- 133 (287)
Q Consensus 63 --~~~~~~~~~-~-~-~-~~~~~~l~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 133 (287)
++.+..... + . + ......|++++ .+.+|+.. ..+.|++-+-....++.+....
T Consensus 114 ~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~------------------~~~~l~~S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 114 KTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS------------------RTQGLWRSTDRAQTWSRMNQLPD 175 (763)
T ss_dssp SSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC------------------SSSCEEEESSTTSSCEECTTSCC
T ss_pred CCceeccCCcccCccccCccccceEEECCCCCCEEEEEe------------------CCCcEEEECCCCcCccccccCcc
Confidence 666542110 0 0 0 01113578875 36788842 2245665543322344332110
Q ss_pred -----cccceEEEccC-CCEEEEEeCCCCEEEE
Q 023085 134 -----YFANGVALSRD-EDYVVVCESWKFRCRK 160 (287)
Q Consensus 134 -----~~~~~i~~~~~-~~~l~v~~~~~~~l~~ 160 (287)
.....++++|. .+.+|++...++.|++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~ 208 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAVGGLWV 208 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESSTTCEEE
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCCCeEEE
Confidence 11234567764 3458887654333544
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=88.82 E-value=7.9 Score=35.47 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=64.8
Q ss_pred CeEECC-CCcEEEEeCC------------CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCc
Q 023085 37 GLTSTK-EGHLIICDNA------------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPH 101 (287)
Q Consensus 37 ~i~~d~-dg~l~v~~~~------------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~ 101 (287)
..++.+ +|+||+.... ..+.++| .++ ++.+..... .......++++..+|.||+....
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~------ 262 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGN------ 262 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSS------
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCCCCCCEEEeCCC------
Confidence 566666 8898887311 1367888 555 554432211 11123345677788999995211
Q ss_pred ceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEeC-CC-----CEEEEEEecC
Q 023085 102 EYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCES-WK-----FRCRKYWLKG 165 (287)
Q Consensus 102 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~-~~-----~~l~~~~~~~ 165 (287)
....+++||+.++++..+.... ..-...++.++++ +|+..- .. ..+.+||...
T Consensus 263 ----------~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 263 ----------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp ----------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred ----------CCCceEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence 2236999999888877654211 1223455666787 666643 11 4588888754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=88.42 E-value=4.1 Score=34.48 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=46.3
Q ss_pred cccceEEEcC--------CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCC
Q 023085 76 RFANDVVEAS--------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 76 ~~~~~l~~d~--------~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~ 146 (287)
..++++++.+ +|++.++. ..++.|..+|..++. .............++|+|++.
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~-----------------s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 199 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASV-----------------GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNP 199 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEE-----------------ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEE
T ss_pred CceEEEEEccccccccCCCCCEEEEE-----------------ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCC
Confidence 4678888865 67777752 234566666654333 333333334556788999886
Q ss_pred EEEEEeCCCCEEEEEEecC
Q 023085 147 YVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~ 165 (287)
.+.++....+.|..||+..
T Consensus 200 ~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 200 NQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEEEEEETTSEEEEEETTC
T ss_pred ceEEecCCCCEEEEEECCC
Confidence 5566656678899998754
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.25 E-value=8.9 Score=30.89 Aligned_cols=218 Identities=10% Similarity=0.015 Sum_probs=107.3
Q ss_pred CeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCC------CceEEEc-cCC-cEEEeeecCCccccccceEE
Q 023085 14 GWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV 82 (287)
Q Consensus 14 g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 82 (287)
..+.+|+ .+++......+. ...++.+. -+++||+.... ..++++| .+. ++.+..... +. .-.+++
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r-~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD--RR-STLGAA 105 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS--CC-BSCEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc--cc-cceEEE
Confidence 3578888 556555433221 11112322 36788887321 2488999 566 666643211 11 112232
Q ss_pred EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc--ccceEEEccCCCEEEEEeCC------
Q 023085 83 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVCESW------ 154 (287)
Q Consensus 83 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~l~v~~~~------ 154 (287)
+ -++.+|+.... ........++++|+.+++++.+..... .....+. -++ .||+..-.
T Consensus 106 ~-~~~~iyv~GG~------------~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 106 V-LNGLLYAVGGF------------DGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGG-LLYAVGGYDVASRQ 170 (302)
T ss_dssp E-ETTEEEEEEEE------------CSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT-EEEEECCEETTTTE
T ss_pred E-ECCEEEEEcCC------------CCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECC-EEEEEeCCCCCCCc
Confidence 2 26788884211 000112468999999888877643211 1122332 234 47876421
Q ss_pred -CCEEEEEEecCCCCcceeEEeccCC-CCC-cceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 155 -KFRCRKYWLKGERKGKLETFAENLP-GAP-DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 155 -~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
...+++||+...+ ..... ..+ ... ..++. -+++||+...... .
T Consensus 171 ~~~~~~~yd~~~~~---W~~~~-~~p~~r~~~~~~~-~~~~iyv~GG~~~-----------------------------~ 216 (302)
T 2xn4_A 171 CLSTVECYNATTNE---WTYIA-EMSTRRSGAGVGV-LNNLLYAVGGHDG-----------------------------P 216 (302)
T ss_dssp ECCCEEEEETTTTE---EEEEC-CCSSCCBSCEEEE-ETTEEEEECCBSS-----------------------------S
T ss_pred cccEEEEEeCCCCc---EEECC-CCccccccccEEE-ECCEEEEECCCCC-----------------------------C
Confidence 2458888875432 22221 111 111 12222 2577888764310 0
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEec-CC----CeEEEEeC
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL-TS----NFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~-~~----~~i~~~~~ 286 (287)
.....+.+||++.+.-..+..... ......++..+++||+-+= .+ +.|.+||+
T Consensus 217 ~~~~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWRQVADMNM--CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred cccceEEEEeCCCCCEeeCCCCCC--ccccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence 112368889988766555543111 1122334445788887642 22 34777775
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=87.32 E-value=10 Score=30.66 Aligned_cols=228 Identities=12% Similarity=0.088 Sum_probs=111.3
Q ss_pred CCcEEEEec-----CCeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCC----------CceEEEc-cCC-c
Q 023085 4 NGVIYTATR-----DGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNA----------NGLHKVS-EDG-V 63 (287)
Q Consensus 4 ~G~l~~~~~-----~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~----------~gi~~~~-~~g-~ 63 (287)
++.||+--. -..+.+|+ ++++......+. ...+.++. -+++||+.... ..++++| .+. +
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 355665421 23678888 566655533221 11112222 36788876321 2478888 556 6
Q ss_pred EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc--ccceEEE
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--FANGVAL 141 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~i~~ 141 (287)
+.+.... .+... ..+++ -++.||+.... . .......++++|+.+++++.+..... .....+.
T Consensus 103 ~~~~~~p--~~r~~-~~~~~-~~~~iyv~GG~--------~----~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 103 SPCAPMS--VPRNR-IGVGV-IDGHIYAVGGS--------H----GCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp EECCCCS--SCCBT-CEEEE-ETTEEEEECCE--------E----TTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eECCCCC--cCccc-cEEEE-ECCEEEEEcCC--------C----CCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 6653221 11112 22222 26788885211 0 00112469999999888877643211 1123332
Q ss_pred ccCCCEEEEEeCC-----CCEEEEEEecCCCCcceeEEeccCC-CC-CcceeeCCCCCEEEEEeccchhHHHHhhcchhH
Q 023085 142 SRDEDYVVVCESW-----KFRCRKYWLKGERKGKLETFAENLP-GA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLI 214 (287)
Q Consensus 142 ~~~~~~l~v~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~ 214 (287)
. ++ .||+..-. .+.+++||+...+ ..... ..+ .. ...++.. +++||+......
T Consensus 167 ~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~~------------- 226 (308)
T 1zgk_A 167 L-NR-LLYAVGGFDGTNRLNSAECYYPERNE---WRMIT-AMNTIRSGAGVCVL-HNCIYAAGGYDG------------- 226 (308)
T ss_dssp E-TT-EEEEECCBCSSCBCCCEEEEETTTTE---EEECC-CCSSCCBSCEEEEE-TTEEEEECCBCS-------------
T ss_pred E-CC-EEEEEeCCCCCCcCceEEEEeCCCCe---EeeCC-CCCCccccceEEEE-CCEEEEEeCCCC-------------
Confidence 2 34 57776421 2458889875432 11111 111 11 1122222 677888764310
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEe-cC----CCeEEEEeC
Q 023085 215 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS-LT----SNFIGKVQL 286 (287)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~-~~----~~~i~~~~~ 286 (287)
......+.+||++.+.-..+..... ......++..+++||+-+ .. .+.|.+||+
T Consensus 227 ----------------~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 227 ----------------QDQLNSVERYDVETETWTFVAPMKH--RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp ----------------SSBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred ----------------CCccceEEEEeCCCCcEEECCCCCC--CccceEEEEECCEEEEEcCcCCCcccceEEEEcC
Confidence 0112468889988766555442111 112233444578888754 22 345677765
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.29 E-value=12 Score=30.36 Aligned_cols=212 Identities=13% Similarity=-0.052 Sum_probs=102.5
Q ss_pred CeEEEEE--CCceEEEEeeCCccccC-eEECCCCcEEEEeC------C--C----ceEEEc-cCC-cEEEeeecCCcccc
Q 023085 14 GWIKRLQ--DGTWVNWKFIDSQTLVG-LTSTKEGHLIICDN------A--N----GLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 14 g~i~~~~--~~~~~~~~~~~~~~~~~-i~~d~dg~l~v~~~------~--~----gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
..+.+|| ++++.....+...+..+ -+...+++||+... . . .++++| .++ ++.+.+.. .+.
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r- 89 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP--SPR- 89 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS--SCE-
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC--cch-
Confidence 5789999 66665422221112112 22334778887642 1 0 177888 556 65553321 111
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEeCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~~ 154 (287)
.-.+++.. ++.||+..... .. ........++++|+.+++++.+.... ......+. .++ .||+..-.
T Consensus 90 ~~~~~~~~-~~~lyv~GG~~------~~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~ 157 (315)
T 4asc_A 90 CLFGLGEA-LNSIYVVGGRE------IK---DGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMD-LVYVIGGK 157 (315)
T ss_dssp ESCEEEEE-TTEEEEECCEE------SS---TTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETT-EEEEECCB
T ss_pred hceeEEEE-CCEEEEEeCCc------CC---CCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECC-EEEEEeCC
Confidence 11223232 67888852110 00 00112346999999988887664321 11122332 334 47776532
Q ss_pred ------CCEEEEEEecCCCCcceeEEeccCC-CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 155 ------KFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 155 ------~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
.+.+++||+...+ ..... ..+ .....-+.--+++||+......
T Consensus 158 ~~~~~~~~~~~~yd~~~~~---W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~-------------------------- 207 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFE---WKELA-PMQTARSLFGATVHDGRIIVAAGVTD-------------------------- 207 (315)
T ss_dssp CTTSCBCCCEEEEETTTTE---EEECC-CCSSCCBSCEEEEETTEEEEEEEECS--------------------------
T ss_pred CCCCcccceEEEEeCCCCe---EEECC-CCCCchhceEEEEECCEEEEEeccCC--------------------------
Confidence 1368899875432 11111 111 1111112222668888765411
Q ss_pred cccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEe
Q 023085 228 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS 275 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 275 (287)
......+.+||++.+.-..+..... ......++..+++||+-+
T Consensus 208 ---~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~l~v~G 250 (315)
T 4asc_A 208 ---TGLTSSAEVYSITDNKWAPFEAFPQ--ERSSLSLVSLVGTLYAIG 250 (315)
T ss_dssp ---SSEEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEEE
T ss_pred ---CCccceEEEEECCCCeEEECCCCCC--cccceeEEEECCEEEEEC
Confidence 1112478899988766555543111 112234444577888743
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=85.92 E-value=2.8 Score=37.81 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=57.5
Q ss_pred eEEEEeCCC----C-eeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC------CCCcce--eEEec-cCCC
Q 023085 115 QLLKYDPSS----N-ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG------ERKGKL--ETFAE-NLPG 180 (287)
Q Consensus 115 ~v~~~~~~~----~-~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~------~~~~~~--~~~~~-~~~~ 180 (287)
+|-.+|... + .+..+.+....|+|+-++|||++++++.-...++..++.+. .++.++ ..... ...-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 466677654 2 23334445568999999999999999998889999999762 111111 11221 1223
Q ss_pred CCcceeeCCCCCEEEEEec
Q 023085 181 APDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 181 ~~~~i~~d~~G~lwv~~~~ 199 (287)
.|...++|.+|+.|.+..-
T Consensus 379 GPlHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp CEEEEEECSSSEEEEEETT
T ss_pred cccEEEECCCCceEeeeee
Confidence 5889999999999998853
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.56 E-value=5.5 Score=33.41 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=54.3
Q ss_pred CCCceEEEEeCCCCeeEEeeccc--cccceEE--EccCCCEEEEEe-CCCCEEEEEEecCCCCcceeEEecc-CCCCCc-
Q 023085 111 KPHGQLLKYDPSSNITTLVADGF--YFANGVA--LSRDEDYVVVCE-SWKFRCRKYWLKGERKGKLETFAEN-LPGAPD- 183 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~--~~~~~~~l~v~~-~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~- 183 (287)
+.++.|+.+|.++|+........ ..+-... -.+.+..+|+.. +..++|+.++.+++. .+...-... ....|.
T Consensus 17 t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~lv~~SP~~ 95 (339)
T 2be1_A 17 DVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQLVSTSPLH 95 (339)
T ss_dssp ETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHHHTTCSEE
T ss_pred eCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccceeccccc
Confidence 34567788887777765543221 1110000 001233466665 467788888864321 111111100 000110
Q ss_pred ---ceee------CCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEEC
Q 023085 184 ---NINL------APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVD 252 (287)
Q Consensus 184 ---~i~~------d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~ 252 (287)
...+ ..+|.+|+++.. +.++.+|.. |+.++.+..
T Consensus 96 ~~~~pvv~~~~~~~~~g~Vy~Gs~~-----------------------------------g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 96 LKTNIVVNDSGKIVEDEKVYTGSMR-----------------------------------TIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EECC----------CCEEEEECEEE-----------------------------------EEEEEEETTTCCEEEEEST
T ss_pred cCCCceeecccccccCCEEEEEecC-----------------------------------CEEEEEECCCCcEEEEEec
Confidence 1112 257889999987 688999864 899998865
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=83.58 E-value=19 Score=30.28 Aligned_cols=58 Identities=10% Similarity=-0.059 Sum_probs=33.7
Q ss_pred EEEcc-CCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 139 VALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 139 i~~~~-~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.+ .++.+.++....+.|..|+...+... .... ........+++.++|++..+...
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~--~~~~-~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSN--SIPI-QLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCC--EEEE-ECSSCEEEEEECTTSSEEEEEES
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEE--EEec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence 34444 34445555566788999997643221 1111 12223567999999987766544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.38 E-value=16 Score=29.29 Aligned_cols=133 Identities=15% Similarity=0.161 Sum_probs=69.1
Q ss_pred CeEEEEE--CCc---eEEEEeeCC-ccccCeEECCCCcEEEEeCC------CceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 14 GWIKRLQ--DGT---WVNWKFIDS-QTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 14 g~i~~~~--~~~---~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
..+++|+ +++ ++.....+. ...+..+. -+++||+.... ..++++| .+. ++.+.... .+... .
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~-~ 153 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAREG-A 153 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCCBS-C
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCccc-c
Confidence 3588888 555 665543221 11112222 36788887421 2488899 566 66664322 11112 2
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc--ccceEEEccCCCEEEEEeCC---
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVCESW--- 154 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~l~v~~~~--- 154 (287)
.+++ -++.||+..... .......++++|+.+++++.+..... ....++. .++ .||+..-.
T Consensus 154 ~~~~-~~~~iyv~GG~~------------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~i~v~GG~~~~ 218 (301)
T 2vpj_A 154 GLVV-ASGVIYCLGGYD------------GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LND-HIYVVGGFDGT 218 (301)
T ss_dssp EEEE-ETTEEEEECCBC------------SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT-EEEEECCBCSS
T ss_pred eEEE-ECCEEEEECCCC------------CCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECC-EEEEEeCCCCC
Confidence 2222 267888852110 00113469999999888877643211 1122222 234 47776422
Q ss_pred --CCEEEEEEecC
Q 023085 155 --KFRCRKYWLKG 165 (287)
Q Consensus 155 --~~~l~~~~~~~ 165 (287)
.+.+++||+..
T Consensus 219 ~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 219 AHLSSVEAYNIRT 231 (301)
T ss_dssp SBCCCEEEEETTT
T ss_pred cccceEEEEeCCC
Confidence 24688998754
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=82.09 E-value=11 Score=35.51 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=72.3
Q ss_pred CCcEEEEecCCeEEEEE-CC-ceEEEEee-C---CccccCeEECC--CCcEEEEeCCCceEEEccCC--cEEEeeecCCc
Q 023085 4 NGVIYTATRDGWIKRLQ-DG-TWVNWKFI-D---SQTLVGLTSTK--EGHLIICDNANGLHKVSEDG--VENFLSYVNGS 73 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~-~~~~~~~~-~---~~~~~~i~~d~--dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~ 73 (287)
.+.+|+++ .+.|++-. .| .++.+... + .... .|.+.+ +++||++...++|++-+..| ++.+.......
T Consensus 600 ~~~~y~g~-~g~v~~S~DgG~tW~~~~~~lp~~~~~~~-~i~~~~~~~~~l~~~~~~~~l~~S~D~G~tW~~~~~~~~~~ 677 (763)
T 3a0f_A 600 ANTFYVYV-EGDFFVSTDGGKSYTKKGNGLPCCWTYTG-TPVTSNLRAGELWVSVKGVGIYHSTDFGNTFTALAGSGSSL 677 (763)
T ss_dssp TTCEEEEE-TTEEEEESSTTSBCEEECBTSCCSSCCCE-EEEECSSSTTCEEEEETTTEEEEESSTTSBCEECTTBTTTB
T ss_pred CCEEEEEc-CCCEEEEeCCCcCccccccCCCcccCccc-cEEECCCCCCcEEEEcCCCeEEEEcCCCCCceEccCCCccc
Confidence 45788885 56777765 33 44444211 1 1122 155554 67899998766788776554 66653111100
Q ss_pred ccc-ccceEEEc-C-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee---ccccccceEEEccCC-C
Q 023085 74 KLR-FANDVVEA-S-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDE-D 146 (287)
Q Consensus 74 ~~~-~~~~l~~d-~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~-~ 146 (287)
... .-.+++.. . ...||+.... .....++||+-+-....+..+. ..+..+..++++|.. .
T Consensus 678 ~~~~~~~g~~~~~~~~~~l~~~G~~-------------~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~i~~~p~~~~ 744 (763)
T 3a0f_A 678 NPAVFSIGAPQTPNATETLFLWGIP-------------SASQPEGLYMSTDNGGLWTRLNDDAHNYGGATVISGDPRIYG 744 (763)
T ss_dssp EEEEEEEECCSSTTSSCEEEEEEEC-------------STTSCSEEEEESSTTSCCEECSCTTCCTBCEEEEEECTTSTT
T ss_pred ccceeEEeeecCCCCCceEEEEEEc-------------ccCCCcEEEEeCCCCCCcEeccCccccCCCcceEEeCCCCCC
Confidence 000 00011222 2 3467874200 0012467887765434455554 222223357778754 3
Q ss_pred EEEEEeCCCCEEEEEEe
Q 023085 147 YVVVCESWKFRCRKYWL 163 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~ 163 (287)
.||++.. +..|+.-++
T Consensus 745 ~v~~~T~-GrGi~~g~~ 760 (763)
T 3a0f_A 745 RVYIGMN-GRGIICAQA 760 (763)
T ss_dssp EEEEEEB-SSCEEEEES
T ss_pred EEEEeCC-CCeEEEEec
Confidence 5888764 556776664
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=81.25 E-value=20 Score=29.02 Aligned_cols=217 Identities=12% Similarity=0.051 Sum_probs=103.5
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCcccc-CeEECCCCcEEEEeCC----C--------ceEEEc-cCC-cEEEee
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLV-GLTSTKEGHLIICDNA----N--------GLHKVS-EDG-VENFLS 68 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~-~i~~d~dg~l~v~~~~----~--------gi~~~~-~~g-~~~~~~ 68 (287)
.||+- .+..+.+|+ ++++.....+...|.. .-+...++.||+.... . -++++| .++ ++.+..
T Consensus 17 ~i~~~-GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 17 LILLV-NDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEEE-CSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhhc-cccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 34443 233588898 5666653322212211 2233457788887431 0 177888 556 665532
Q ss_pred ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCC
Q 023085 69 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDED 146 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~ 146 (287)
... + ..-.++++. ++.||+...... ........++++|+.+++++.+.... ...+..+. .++
T Consensus 96 ~p~--~-r~~~~~~~~-~~~iyv~GG~~~----------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~- 159 (318)
T 2woz_A 96 LPS--A-RCLFGLGEV-DDKIYVVAGKDL----------QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNG- 159 (318)
T ss_dssp BSS--C-BCSCEEEEE-TTEEEEEEEEBT----------TTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETT-
T ss_pred CCc--c-ccccceEEE-CCEEEEEcCccC----------CCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECC-
Confidence 211 1 122233332 678888421100 00011246999999988887764311 11223333 344
Q ss_pred EEEEEeCC------CCEEEEEEecCCCCcceeEEeccCCCCC-cceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHH
Q 023085 147 YVVVCESW------KFRCRKYWLKGERKGKLETFAENLPGAP-DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 219 (287)
Q Consensus 147 ~l~v~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~ 219 (287)
.||+..-. .+.+++||+...+ ............ ..++. -+++||+......
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~------------------ 217 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGD---WKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTE------------------ 217 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTE---EEEECCCSSCCBSCEEEE-ETTEEEEEEEEET------------------
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCE---EEECCCCCCCcccceEEE-ECCEEEEEcCcCC------------------
Confidence 47776421 2358899875432 222211111111 12222 3578888865310
Q ss_pred hCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEE
Q 023085 220 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274 (287)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~ 274 (287)
......+.+||++.+.-..+..... ......++..+++||+-
T Consensus 218 -----------~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~ 259 (318)
T 2woz_A 218 -----------DGLSASVEAFDLKTNKWEVMTEFPQ--ERSSISLVSLAGSLYAI 259 (318)
T ss_dssp -----------TEEEEEEEEEETTTCCEEECCCCSS--CCBSCEEEEETTEEEEE
T ss_pred -----------CCccceEEEEECCCCeEEECCCCCC--cccceEEEEECCEEEEE
Confidence 0012467889987665444432111 11223445567888875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=80.94 E-value=36 Score=31.71 Aligned_cols=112 Identities=10% Similarity=0.070 Sum_probs=59.0
Q ss_pred CeEEC-CCCc-EEEEeCCC-----ceEEEc-cCCcEEEeeecCCccccccceEEEcCCC-cEEEEcCCCCCCCcceeeee
Q 023085 37 GLTST-KEGH-LIICDNAN-----GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 37 ~i~~d-~dg~-l~v~~~~~-----gi~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~ 107 (287)
+..+. |||+ |.++.... .|++++ .+|.+.+... .. ....+++..+|| .|+++...
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~-~~~~~~~WspDg~~l~y~~~d------------ 241 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VS-GTNGEIVWGPDHTSLFYVTKD------------ 241 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EE-EECSCCEECSSTTEEEEEEEC------------
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---cc-CceeeEEEecCCCEEEEEEEC------------
Confidence 56789 9996 44343222 278887 4441111110 00 112456788887 45554211
Q ss_pred eccCCCceEEEEeCCCCe---eEEee-ccccccceEEEccCCCEEEEEeCC--CCEEEEEEecC
Q 023085 108 LEGKPHGQLLKYDPSSNI---TTLVA-DGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKG 165 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~---~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~ 165 (287)
.......|++++..+++ ...+. .......++.++|||+.|++.... ...|+.+++++
T Consensus 242 -~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 242 -ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp -TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred -CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 00111368888876543 11221 111233466799999988876632 34688888764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.71 E-value=20 Score=28.65 Aligned_cols=219 Identities=8% Similarity=0.054 Sum_probs=105.5
Q ss_pred CeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCC------CceEEEc-cCC----cEEEeeecCCccccccc
Q 023085 14 GWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG----VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 14 g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g----~~~~~~~~~~~~~~~~~ 79 (287)
..+.+|+ ++++......+. ...+..+ .-+++||+.... ..+++++ .++ ++.+.... .+... .
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p--~~r~~-~ 106 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN--VRRGL-A 106 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS--SCCBS-C
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC--CCccc-e
Confidence 3678888 566655443221 1111222 236788876321 2488888 332 34442211 11112 2
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEeCC---
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESW--- 154 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~~--- 154 (287)
.++.. ++.||+..... .......++++|+.+++++.+.... ......+. .++ .||+..-.
T Consensus 107 ~~~~~-~~~lyv~GG~~------------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~ 171 (301)
T 2vpj_A 107 GATTL-GDMIYVSGGFD------------GSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASG-VIYCLGGYDGL 171 (301)
T ss_dssp EEEEE-TTEEEEECCBC------------SSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETT-EEEEECCBCSS
T ss_pred eEEEE-CCEEEEEcccC------------CCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECC-EEEEECCCCCC
Confidence 22222 67888852110 0011347999999988887764321 11123332 244 47776421
Q ss_pred --CCEEEEEEecCCCCcceeEEeccCC-CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 155 --KFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 155 --~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
.+.+++||+...+ ..... ..+ .....-+.--+++||+...... .
T Consensus 172 ~~~~~~~~~d~~~~~---W~~~~-~~p~~r~~~~~~~~~~~i~v~GG~~~-----------------------------~ 218 (301)
T 2vpj_A 172 NILNSVEKYDPHTGH---WTNVT-PMATKRSGAGVALLNDHIYVVGGFDG-----------------------------T 218 (301)
T ss_dssp CBCCCEEEEETTTTE---EEEEC-CCSSCCBSCEEEEETTEEEEECCBCS-----------------------------S
T ss_pred cccceEEEEeCCCCc---EEeCC-CCCcccccceEEEECCEEEEEeCCCC-----------------------------C
Confidence 2468889875432 22221 111 1111111222567888764310 0
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEe-cCC----CeEEEEeC
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS-LTS----NFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~-~~~----~~i~~~~~ 286 (287)
.....+.++|++.+.-..+..... ......++..+++||+-+ ..+ +.|.+||+
T Consensus 219 ~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 219 AHLSSVEAYNIRTDSWTTVTSMTT--PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCBCSSSBEEEEEEEET
T ss_pred cccceEEEEeCCCCcEEECCCCCC--cccceeEEEECCEEEEEcCcCCCcccccEEEEcC
Confidence 012468889988666555542111 112233444578888764 222 45677765
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.62 E-value=21 Score=28.88 Aligned_cols=195 Identities=10% Similarity=0.000 Sum_probs=89.8
Q ss_pred cEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC
Q 023085 45 HLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 122 (287)
Q Consensus 45 ~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 122 (287)
.|++.. +..+.++| .++ .... ......+ ..-.+ ++..++.||+..... .............++++|+.
T Consensus 17 ~i~~~G-G~~~~~yd~~~~~W~~~-~~~~~~~-r~~~~-~~~~~~~lyv~GG~~------~~~~~~~~~~~~~~~~~d~~ 86 (318)
T 2woz_A 17 LILLVN-DTAAVAYDPMENECYLT-ALAEQIP-RNHSS-IVTQQNQVYVVGGLY------VDEENKDQPLQSYFFQLDNV 86 (318)
T ss_dssp EEEEEC-SSEEEEEETTTTEEEEE-EECTTSC-SSEEE-EECSSSCEEEEESSC------C-------CCCBEEEEEETT
T ss_pred hhhhcc-ccceEEECCCCCceecc-cCCccCC-ccceE-EEEECCEEEEECCcc------cCccccCCCccccEEEEeCC
Confidence 455553 34688999 555 5442 2111111 12122 344568888853210 00000000112248999999
Q ss_pred CCeeEEeeccc--cccceEEEccCCCEEEEEeCC----C---CEEEEEEecCCCCcceeEEeccCCC-C-CcceeeCCCC
Q 023085 123 SNITTLVADGF--YFANGVALSRDEDYVVVCESW----K---FRCRKYWLKGERKGKLETFAENLPG-A-PDNINLAPDG 191 (287)
Q Consensus 123 ~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~~----~---~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~d~~G 191 (287)
+++++.+.... ....+++.. ++ .||+..-. . +.+++||....+ ..... ..+. . ...++. -++
T Consensus 87 ~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~-~~p~~r~~~~~~~-~~~ 159 (318)
T 2woz_A 87 SSEWVGLPPLPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAAK---WSEVK-NLPIKVYGHNVIS-HNG 159 (318)
T ss_dssp TTEEEECSCBSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTTE---EEEEC-CCSSCEESCEEEE-ETT
T ss_pred CCcEEECCCCCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCCC---EeECC-CCCCcccccEEEE-ECC
Confidence 88887664211 112233322 34 47776421 1 357888865432 22221 1111 1 112222 467
Q ss_pred CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEE
Q 023085 192 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHL 271 (287)
Q Consensus 192 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 271 (287)
+||+....... ......+.+||++.+.-..+..... .....+++..+++|
T Consensus 160 ~iyv~GG~~~~----------------------------~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i 209 (318)
T 2woz_A 160 MIYCLGGKTDD----------------------------KKCTNRVFIYNPKKGDWKDLAPMKT--PRSMFGVAIHKGKI 209 (318)
T ss_dssp EEEEECCEESS----------------------------SCBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEE
T ss_pred EEEEEcCCCCC----------------------------CCccceEEEEcCCCCEEEECCCCCC--CcccceEEEECCEE
Confidence 88887643100 0112468899988765555432111 11223344457888
Q ss_pred EEEe-cC----CCeEEEEeC
Q 023085 272 YVIS-LT----SNFIGKVQL 286 (287)
Q Consensus 272 ~i~~-~~----~~~i~~~~~ 286 (287)
|+-+ .. .+.+.+||+
T Consensus 210 yv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp EEEEEEETTEEEEEEEEEET
T ss_pred EEEcCcCCCCccceEEEEEC
Confidence 8764 21 135566664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 287 | ||||
| d1v04a_ | 340 | b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO | 7e-32 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 5e-04 |
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 118 bits (297), Expect = 7e-32
Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 19/227 (8%)
Query: 55 LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114
E+ L + L ND+V Y T P+ ++ G
Sbjct: 129 FKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 188
Query: 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF 174
+ Y P+ +VA+GF FANG+ +S D YV + E + Y
Sbjct: 189 FVTYYSPNDV--RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV 246
Query: 175 AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234
+ DNI++ P + R+ ++ + + S
Sbjct: 247 -LSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILS-------- 297
Query: 235 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFI 281
E+ + + G ++ T L + ++ +
Sbjct: 298 -------EEPK-VTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKAL 336
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 24/208 (11%)
Query: 2 DKNGVIY-TATRDGWIKRLQ-DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANG---- 54
D+ G ++ +G I ++ + + F+ + K+G L +C +
Sbjct: 48 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 107
Query: 55 -LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113
+ +E+G + S +D+V S G YFT P
Sbjct: 108 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-----------DFRGYSTNPL 156
Query: 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL-----KGERK 168
G + P T + ANG+ALS DE + V E+ R + L +
Sbjct: 157 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF 216
Query: 169 GKLETFAENLPGAPDNINLAPDGTFWIA 196
G + PD+ + D ++A
Sbjct: 217 GATIPYYFTGHEGPDSCCIDSDDNLYVA 244
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.94 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.89 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.88 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 99.87 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.77 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.75 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.64 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.62 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.61 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.59 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.54 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.46 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.42 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.29 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.28 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.19 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.07 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.03 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.0 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.82 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.79 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.71 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.71 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.65 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.6 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.59 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.47 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.43 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.37 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.25 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.25 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.25 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.18 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.17 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.16 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.11 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.04 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.0 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.99 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.98 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.96 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.9 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.89 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.81 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.8 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.78 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.56 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.5 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.48 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.94 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.83 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.7 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 96.55 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 96.45 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.42 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.34 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.21 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.14 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.89 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.67 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.66 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.21 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.18 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.77 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 94.67 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 93.68 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.34 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 92.99 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 92.94 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 92.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 91.8 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 90.51 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 89.85 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 89.74 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 88.86 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 87.94 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 87.53 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 85.65 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 84.61 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 84.35 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 84.06 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 83.89 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.08 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 81.6 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 80.44 |
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.95 E-value=7.4e-26 Score=190.73 Aligned_cols=245 Identities=20% Similarity=0.295 Sum_probs=180.0
Q ss_pred CCCCCcEEEEec--------CCeEEEEE--CCceEEEEee-----CCccccCeEECCCCc-EEEEeCCCceEEEccCC-c
Q 023085 1 MDKNGVIYTATR--------DGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGH-LIICDNANGLHKVSEDG-V 63 (287)
Q Consensus 1 ~d~~G~l~~~~~--------~g~i~~~~--~~~~~~~~~~-----~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~~~g-~ 63 (287)
+|++|+||+.+. +|+|++++ ++....+..+ ...|. +++++++|+ ||+++..+++.+++.++ .
T Consensus 25 ~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~vad~~~~i~~~~~~g~~ 103 (314)
T d1pjxa_ 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFVADMRLGLLVVQTDGTF 103 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEEEETTTEEEEEETTSCE
T ss_pred EeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEEEEECCCeEEEEeCCCcE
Confidence 478999999863 46799999 4555544332 23577 999999985 88988778899999766 4
Q ss_pred EEEe-eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEc
Q 023085 64 ENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS 142 (287)
Q Consensus 64 ~~~~-~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (287)
..+. ....+.++..|++++++++|++||++........... .......+.|++++++ +++..+...+..|||++++
T Consensus 104 ~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~--~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~ 180 (314)
T d1pjxa_ 104 EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVR 180 (314)
T ss_dssp EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEE
T ss_pred EEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc--ceeccCCceEEEEeec-CceeEeeCCcceeeeeEEC
Confidence 4433 3344566778999999999999999877543322211 1112345789999987 6777777778889999999
Q ss_pred cCCC----EEEEEeCCCCEEEEEEecCC-CCcceeEEecc---CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhH
Q 023085 143 RDED----YVVVCESWKFRCRKYWLKGE-RKGKLETFAEN---LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI 214 (287)
Q Consensus 143 ~~~~----~l~v~~~~~~~l~~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~ 214 (287)
++++ .||++++..++|++|+++.. .....+.+... ..+.|+||++|++|+||++...
T Consensus 181 ~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~--------------- 245 (314)
T d1pjxa_ 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG--------------- 245 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET---------------
T ss_pred CCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC---------------
Confidence 8765 79999999999999998632 33334444321 2346899999999999999987
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCCCc-EEEEEECCCCccccceEEEEEe-C-CEEEEEecCCCeEEEEeCC
Q 023085 215 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGT-IIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~-~-g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|.+|+|++. .+..+..+. ..++++++. + .+|||++..+++|.++++.
T Consensus 246 -------------------~g~I~~~dp~~g~~~~~i~~p~----~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 246 -------------------SSHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp -------------------TTEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred -------------------CCEEEEEeCCCCEEEEEEECCC----CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 368999999854 455666543 246777775 3 4799999999999999863
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.94 E-value=3.7e-24 Score=178.62 Aligned_cols=221 Identities=17% Similarity=0.174 Sum_probs=170.1
Q ss_pred CCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
++|.||+.+ .+++|++++ +++.+.+ ..+..+. +++.+++|+||++.. +|+++++ .++ ++.+.....+.+...
T Consensus 28 ~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~~~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~ 104 (295)
T d2ghsa1 28 ASGTAWWFNILERELHELHLASGRKTVH-ALPFMGS-ALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNR 104 (295)
T ss_dssp TTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEE-EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeEEEE-ECCCCcE-EEEEecCCCEEEEEe-CccEEeecccceeeEEeeeecCCCccc
Confidence 478899888 788999999 4554444 3444556 889999999999984 6999999 677 777765544555668
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
++++.+|++|++|+++...+ .....+.++++.. +++..+...+..+|+++++++++.+|++++..++
T Consensus 105 ~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~ 171 (295)
T d2ghsa1 105 SNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 171 (295)
T ss_dssp EEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred ceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEEeecccce
Confidence 89999999999999853310 0123456777753 6777777778889999999999999999999999
Q ss_pred EEEEEecCC--C-CcceeEEec--cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 158 CRKYWLKGE--R-KGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 158 l~~~~~~~~--~-~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
|++|+++.. . ..+...+.. ...+.|+++++|++|+||++...
T Consensus 172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~--------------------------------- 218 (295)
T d2ghsa1 172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG--------------------------------- 218 (295)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET---------------------------------
T ss_pred eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC---------------------------------
Confidence 999998642 1 122333332 24567999999999999999987
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEe---CCEEEEEecC
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV---DNHLYVISLT 277 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~g~l~i~~~~ 277 (287)
.++|.+|+|+|+.+..+..|.. .++++++. ..+|||++..
T Consensus 219 -~g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 219 -EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp -TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBC
T ss_pred -CCceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECC
Confidence 3689999999999999998753 57888885 2789999875
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.6e-23 Score=176.67 Aligned_cols=238 Identities=20% Similarity=0.263 Sum_probs=170.9
Q ss_pred CCCCCcEEEEe-cCCeEEEEE-CCc-eEE-EEeeCCccccCeEECCCCcEEEEeCC-----CceEEEcc-CC-cEEEeee
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ-DGT-WVN-WKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHKVSE-DG-VENFLSY 69 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~-~~~-~~~-~~~~~~~~~~~i~~d~dg~l~v~~~~-----~gi~~~~~-~g-~~~~~~~ 69 (287)
+|++|+||+.+ .+++|++++ ++. ... +......|. ++++++||+||++... .+++.++. .+ ...+...
T Consensus 47 ~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (319)
T d2dg1a1 47 FDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 125 (319)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC
Confidence 47899999988 788999999 443 333 344456788 9999999999999643 35788874 44 5554322
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEE
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 149 (287)
......|++++++++|++|+++..... ....+.+++++++.+.+..+...+..|+|++++++++.||
T Consensus 126 --~~~~~~~nd~~~d~~G~l~vtd~~~~~-----------~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 126 --LSTAYCIDDMVFDSKGGFYFTDFRGYS-----------TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp --SSSCCCEEEEEECTTSCEEEEECCCBT-----------TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred --CCcccCCcceeEEeccceeeccccccc-----------ccCcceeEEEecccceeEEEeeccceeeeeeeccccceEE
Confidence 223457899999999999998754210 1134679999998666777777788999999999999999
Q ss_pred EEeCCCCEEEEEEecCC-CCcce---eEE-eccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 150 VCESWKFRCRKYWLKGE-RKGKL---ETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~-~~~~~---~~~-~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
++++..++|++|+++.. ..... ... .......|+||++|++|+||++...
T Consensus 193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~------------------------- 247 (319)
T d2dg1a1 193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG------------------------- 247 (319)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-------------------------
T ss_pred EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-------------------------
Confidence 99999999999998643 11111 111 1112245999999999999999987
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEECCCCcc--ccceEEEEEe--CCEEEEEec-----CCCeEEEEeC
Q 023085 225 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL--MSFVTSGLQV--DNHLYVISL-----TSNFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~--~g~l~i~~~-----~~~~i~~~~~ 286 (287)
.+.|.+++|+|+.+..+..|.... ...++++... ...||+++. .+..|.+++.
T Consensus 248 ---------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 248 ---------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp ---------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ---------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 469999999999999998775321 2234566654 356777764 2445666654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=2.9e-21 Score=158.01 Aligned_cols=224 Identities=18% Similarity=0.232 Sum_probs=162.2
Q ss_pred CCCCCcEEEEe--cCCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeecCCcc
Q 023085 1 MDKNGVIYTAT--RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSK 74 (287)
Q Consensus 1 ~d~~G~l~~~~--~~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~ 74 (287)
+|++|++|+++ ..+++.+++ .+........ ...|. +++++++|+||+++...++.++..++ ...+... ..
T Consensus 21 vd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~---~~ 96 (260)
T d1rwia_ 21 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF---DG 96 (260)
T ss_dssp ECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEECCC---CS
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeeccceeeeee---ee
Confidence 47899999986 457888887 3333333222 34678 99999999999999777777776444 3333221 12
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...|++++++++|++|+++.. ...++++++.+...... ...+..|.+++++++++ +|+++.
T Consensus 97 ~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~ 158 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDT 158 (260)
T ss_dssp CCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEG
T ss_pred eeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC-Eeeecc
Confidence 457899999999999997533 45688888764443333 24467899999999987 899998
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
...+|.+++.++.. ...+.......|.++++|++|+||++...
T Consensus 159 ~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~---------------------------------- 201 (260)
T d1rwia_ 159 DNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHN---------------------------------- 201 (260)
T ss_dssp GGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETT----------------------------------
T ss_pred ccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecC----------------------------------
Confidence 88999999865421 12222123356999999999999999987
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|+++++++.....+.. .+ +..+++++.+ +|+|||++..+++|.+|+.
T Consensus 202 ~~~i~~~~~~~~~~~~~~~-~~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 202 TNQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp TTEEEEECTTCSCCEECCC-CS--CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred CCEEEEEeCCCCeEEEEcc-CC--CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 3589999998876666542 22 4678899887 6899999999999999874
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.88 E-value=2.3e-20 Score=155.94 Aligned_cols=217 Identities=20% Similarity=0.229 Sum_probs=159.6
Q ss_pred CCCCCcEEEEe-cCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc---cCC-cEEEeeecCCc
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS---EDG-VENFLSYVNGS 73 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~---~~g-~~~~~~~~~~~ 73 (287)
+++||+||+++ .+++|++++ +++.+.+......+. ++++++||+||+++.. +.+.+++ ..+ .+.+....
T Consensus 35 v~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 110 (302)
T d2p4oa1 35 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--- 110 (302)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT---
T ss_pred ECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC---
Confidence 36899999998 578999999 888888888788888 9999999999999755 3455555 234 55544322
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----------cccccceEEEc
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------GFYFANGVALS 142 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~~~i~~~ 142 (287)
....+++++++++|++|+++.. .+.++++++.++....... ....++++.++
T Consensus 111 ~~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~ 173 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 173 (302)
T ss_dssp TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred CccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence 2346899999999999998543 5678999887666544321 12345677654
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCC-CCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhC
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY 221 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (287)
++.+|++++..++|++++.+.. .......+. ....|+++++|++|+||++...
T Consensus 174 --~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~---------------------- 227 (302)
T d2p4oa1 174 --GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHI---------------------- 227 (302)
T ss_dssp --TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBT----------------------
T ss_pred --CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcC----------------------
Confidence 6679999999999999998743 222223332 2346999999999999999986
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-----CCEEEEEecCC
Q 023085 222 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-----DNHLYVISLTS 278 (287)
Q Consensus 222 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~g~l~i~~~~~ 278 (287)
.+.|.+++|+|+.........+ ...++++++. .+.|||++..+
T Consensus 228 ------------~~~V~~i~p~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 228 ------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp ------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ------------CCcEEEECCCCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCCC
Confidence 3689999999987777665443 4567777773 36799997654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.87 E-value=7.7e-20 Score=154.61 Aligned_cols=259 Identities=18% Similarity=0.269 Sum_probs=172.2
Q ss_pred CCCCcEEEEec-------------CCeEEEEE--C--CceEEEEeeC-------CccccCeEE--CCCCc--EEEEeCCC
Q 023085 2 DKNGVIYTATR-------------DGWIKRLQ--D--GTWVNWKFID-------SQTLVGLTS--TKEGH--LIICDNAN 53 (287)
Q Consensus 2 d~~G~l~~~~~-------------~g~i~~~~--~--~~~~~~~~~~-------~~~~~~i~~--d~dg~--l~v~~~~~ 53 (287)
+++|.+++++. .|.|+.++ + .....+.... ..|. ||.+ +++|+ |++.++..
T Consensus 43 ~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~l~~~~dg~~~L~vvnH~~ 121 (340)
T d1v04a_ 43 LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFIDDDNTVYLLVVNHPG 121 (340)
T ss_dssp CTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEEEEECTTCCEEEEEEECST
T ss_pred CCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-ceeEEEcCCCcEEEEEEeccC
Confidence 56788888763 37888888 2 2333332221 2456 6654 66774 77777631
Q ss_pred -----ceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE
Q 023085 54 -----GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 127 (287)
Q Consensus 54 -----gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (287)
.++.++.++ ...+........+..||++++.++|.+|+|+.+..........+...+...+.|++++++ +.+
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~--~~~ 199 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR 199 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS--CEE
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC--ceE
Confidence 256666444 444444445556778999999999999999755322211122223334456789999864 556
Q ss_pred EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHH
Q 023085 128 LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMK 206 (287)
Q Consensus 128 ~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~ 206 (287)
.+...+.+||||+++||++.|||+++...+|++|++++.......... ..++.|+|+.+|+ +|.+|++........+
T Consensus 200 ~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwva~~p~~~~~~- 277 (340)
T d1v04a_ 200 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIF- 277 (340)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHH-
T ss_pred EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEEEECCcccchh-
Confidence 667778999999999999999999999999999999754322333333 4777899999996 7899999987322111
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEE---C-CCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEE
Q 023085 207 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV---A-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG 282 (287)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~ 282 (287)
... +.. .....+.++ + .+++....|.. +|..+..++.+.+.+++||||+...+.|
T Consensus 278 --~~~----------~~~-------~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~L~iGs~~~~~l- 336 (340)
T d1v04a_ 278 --FYD----------AEN-------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL- 336 (340)
T ss_dssp --SCC----------TTS-------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTEEEEEESSSCEE-
T ss_pred --hhc----------ccC-------CCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCEEEEEeeeCCce-
Confidence 111 111 112345555 2 34566666665 5677888888888999999999999887
Q ss_pred EEeC
Q 023085 283 KVQL 286 (287)
Q Consensus 283 ~~~~ 286 (287)
.|+|
T Consensus 337 ~C~~ 340 (340)
T d1v04a_ 337 YCDL 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 6986
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.77 E-value=6.7e-16 Score=126.93 Aligned_cols=225 Identities=13% Similarity=0.202 Sum_probs=155.6
Q ss_pred CCCCCcEEEEe-cCCeEEEEE-CCceEEEEeeC-------CccccCeEECCC-CcEEEEeC-C-CceEEEccCC-cEEEe
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFID-------SQTLVGLTSTKE-GHLIICDN-A-NGLHKVSEDG-VENFL 67 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~-------~~~~~~i~~d~d-g~l~v~~~-~-~gi~~~~~~g-~~~~~ 67 (287)
+|++|+||+++ .+++|.+|+ +|.+....... ..|. +++.+.+ +..+++.. . ..|.+++.+| .....
T Consensus 30 vd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (279)
T d1q7fa_ 30 VNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF 108 (279)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE
T ss_pred EcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccc-cccccccccccceeccCCccccccccccccceeec
Confidence 47899999997 678999999 77765432211 1344 5665544 45555432 2 3566666777 33221
Q ss_pred eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCC
Q 023085 68 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDE 145 (287)
Q Consensus 68 ~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ 145 (287)
.......|.+++++++|.+|+++.. ...++++++....+..+. ..+..+.++++++++
T Consensus 109 ---~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 109 ---GATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQ 168 (279)
T ss_dssp ---CTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred ---CCCcccccceeccccCCcEEEEeec-----------------cceeeEeccCCceeecccccccccccceeeeccce
Confidence 1223467889999999999997533 457888888744344432 345678899999888
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEec-cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
+ +|+++...++|.+|+.++.. ...+.. .....|.+|++|++|+|||+....
T Consensus 169 ~-i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~i~Vad~~~------------------------ 220 (279)
T d1q7fa_ 169 E-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHN------------------------ 220 (279)
T ss_dssp E-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSS------------------------
T ss_pred e-EEeeeccccceeeeecCCce---eeeecccccccCCcccccccCCeEEEEECCC------------------------
Confidence 5 99999988999999976531 222321 123469999999999999997641
Q ss_pred ccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 225 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
...|.+|+++|+.+..+..... ...+..++.+ +|+|||++ .+++|.+|.+
T Consensus 221 ---------~~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~-~n~~v~~fr~ 271 (279)
T d1q7fa_ 221 ---------NFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLAS-KDYRLYIYRY 271 (279)
T ss_dssp ---------SCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEE-TTTEEEEEEC
T ss_pred ---------CcEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEe-CCCeEEEEEe
Confidence 2368899999999888865322 3467888776 79999998 5688988875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=2.1e-16 Score=128.65 Aligned_cols=191 Identities=15% Similarity=0.213 Sum_probs=133.4
Q ss_pred ccccCeEECCCCcEEEEeCC-Cc-eEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 33 QTLVGLTSTKEGHLIICDNA-NG-LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~-~g-i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.|. ++++|++|++|+++.. .+ +.+++..+ ....... .....|.+++++++|++|+++..
T Consensus 15 ~P~-~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~gvav~~~g~i~v~d~~-------------- 76 (260)
T d1rwia_ 15 SPS-GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF---NGLYQPQGLAVDGAGTVYVTDFN-------------- 76 (260)
T ss_dssp CEE-EEEECTTCCEEEEECSSSCEEEEEC----CEEECCC---CSCCSCCCEEECTTCCEEEEETT--------------
T ss_pred CCC-EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEecc---CCccCceEEEEcCCCCEEEeeee--------------
Confidence 477 9999999999999754 34 66665544 4333221 22457899999999999998633
Q ss_pred cCCCceEEEEeCC-CCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 110 GKPHGQLLKYDPS-SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 110 ~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
+.+.++... +............|++++++++++ +|+++..+.++.+++..+.. ...+.......|.++++|
T Consensus 77 ----~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~i~~~ 148 (260)
T d1rwia_ 77 ----NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT---QTVLPFTGLNDPDGVAVD 148 (260)
T ss_dssp ----TEEEEECTTCSCCEECCCCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSS---CEECCCCSCCSCCEEEEC
T ss_pred ----eceeeeeeeccceeeeeeeeeeecccccccccce-eEeeccccccccccccccce---eeeeeecccCCcceeeec
Confidence 334444433 232222233457799999999987 89999888888888764421 111111122368999999
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV- 267 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 267 (287)
++|++|++... .+.|.+++++++....+.... +..+.+++.+
T Consensus 149 ~~g~~~v~~~~----------------------------------~~~i~~~d~~~~~~~~~~~~~---~~~p~gi~~d~ 191 (260)
T d1rwia_ 149 NSGNVYVTDTD----------------------------------NNRVVKLEAESNNQVVLPFTD---ITAPWGIAVDE 191 (260)
T ss_dssp TTCCEEEEEGG----------------------------------GTEEEEECTTTCCEEECCCSS---CCSEEEEEECT
T ss_pred CCCCEeeeccc----------------------------------cccccccccccceeeeeeccc---cCCCccceeee
Confidence 99999999876 358999999987766654322 4568888886
Q ss_pred CCEEEEEecCCCeEEEEeC
Q 023085 268 DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 268 ~g~l~i~~~~~~~i~~~~~ 286 (287)
+|+||++...+++|.+++.
T Consensus 192 ~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 192 AGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp TCCEEEEETTTTEEEEECT
T ss_pred eeeeeeeecCCCEEEEEeC
Confidence 6899999999999999875
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.64 E-value=2.9e-14 Score=119.04 Aligned_cols=205 Identities=12% Similarity=0.029 Sum_probs=133.2
Q ss_pred ceEEEEeeCCccccCeEECCCCcEEEEeCCC--------ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEE
Q 023085 23 TWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--------GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYF 91 (287)
Q Consensus 23 ~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~--------gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v 91 (287)
.++.+.+....+. ++++|++|+||+++... .|++++ .++ .+.+...........|++++++++|+ +|+
T Consensus 9 ~~~~v~~~~~g~E-Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v 87 (314)
T d1pjxa_ 9 LFTKVTEDIPGAE-GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp CCEEEECCCTTCE-EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred ceEEeecCCCCCe-EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEE
Confidence 4455555555567 89999999999986442 389999 455 54443222122234689999999985 677
Q ss_pred EcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----cccccceEEEccCCCEEEEEeCC------------
Q 023085 92 TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDEDYVVVCESW------------ 154 (287)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~l~v~~~~------------ 154 (287)
++ ...++.+++++++....... .+..||.++++++|+ +|+++..
T Consensus 88 ad------------------~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~ 148 (314)
T d1pjxa_ 88 AD------------------MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp EE------------------TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTT
T ss_pred EE------------------CCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCccccccccee
Confidence 64 23468999988554433321 234689999999997 9999753
Q ss_pred ---CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-----CEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 155 ---KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-----TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 155 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-----~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
.++|++++.++. ........ ..|+++++++++ .||++...
T Consensus 149 ~~~~G~v~~~~~dg~----~~~~~~~~-~~pNGi~~~~d~d~~~~~lyv~d~~--------------------------- 196 (314)
T d1pjxa_ 149 QEKFGSIYCFTTDGQ----MIQVDTAF-QFPNGIAVRHMNDGRPYQLIVAETP--------------------------- 196 (314)
T ss_dssp SSSCEEEEEECTTSC----EEEEEEEE-SSEEEEEEEECTTSCEEEEEEEETT---------------------------
T ss_pred ccCCceEEEEeecCc----eeEeeCCc-ceeeeeEECCCCCcceeEEEEEeec---------------------------
Confidence 236888875442 22222111 258899997665 39998765
Q ss_pred ccccCCCceEEEEEC--CCCcEE--EEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 227 QFITLGGGAHLIHVA--EDGTII--RNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~--~~g~~~--~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|++++ .++... +.+....+.....+.+++.+ +|+||+++..+++|.+|+-
T Consensus 197 -------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 197 -------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp -------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred -------ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 35788875 344332 12322222223457788887 7999999999999999974
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.62 E-value=1.4e-13 Score=115.09 Aligned_cols=191 Identities=15% Similarity=0.184 Sum_probs=129.9
Q ss_pred CeEECCCCcEEEEeCC-CceEEEccCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
++++|++|+||+++.. +.|+++++++ ........ ...|++|+++++|++|+++... ....
T Consensus 44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~----~~~p~gla~~~dG~l~va~~~~-------------~~~~ 106 (319)
T d2dg1a1 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGD-------------FKST 106 (319)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTT-------------SSSC
T ss_pred eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCC----CCCeeEEEECCCCCEEEEecCC-------------Cccc
Confidence 8899999999999865 4599999555 33332211 2367899999999999985431 1124
Q ss_pred ceEEEEeCCCCeeEEeec---cccccceEEEccCCCEEEEEeCCC------CEEEEEEecCCCCcceeEEeccCCCCCcc
Q 023085 114 GQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCESWK------FRCRKYWLKGERKGKLETFAENLPGAPDN 184 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~v~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
+.++.++..++.+..... ....++.++++++|+ +|+++... +.+++++.++.. ....... ...|++
T Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~-~~~pnG 181 (319)
T d2dg1a1 107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQN-ISVANG 181 (319)
T ss_dssp CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEE-ESSEEE
T ss_pred eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEEEeec-cceeee
Confidence 578888887666554432 245688999999997 99998643 357887765432 2222222 235899
Q ss_pred eeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCCcEEEEE-----ECCCCc
Q 023085 185 INLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGTIIRNL-----VDPTGQ 256 (287)
Q Consensus 185 i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g~~~~~~-----~~~~~~ 256 (287)
|+++++|+ ||++... .+.|.+++ .++...... ....+
T Consensus 182 ia~s~dg~~lyvad~~----------------------------------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~- 226 (319)
T d2dg1a1 182 IALSTDEKVLWVTETT----------------------------------ANRLHRIALEDDGVTIQPFGATIPYYFTG- 226 (319)
T ss_dssp EEECTTSSEEEEEEGG----------------------------------GTEEEEEEECTTSSSEEEEEEEEEEECCS-
T ss_pred eeeccccceEEEeccc----------------------------------CCceEEEEEcCCCceeccccceeeeccCC-
Confidence 99999985 9999876 34777775 444432221 11111
Q ss_pred cccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 257 LMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 257 ~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
...+.+++++ +|+|||+...+++|.+|+
T Consensus 227 -~~~PdGl~vD~~G~l~Va~~~~g~V~~~~ 255 (319)
T d2dg1a1 227 -HEGPDSCCIDSDDNLYVAMYGQGRVLVFN 255 (319)
T ss_dssp -SSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred -ccceeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence 2347788887 799999999999999986
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.61 E-value=1.7e-13 Score=112.22 Aligned_cols=197 Identities=15% Similarity=0.226 Sum_probs=137.6
Q ss_pred ccccCeEECCCCcEEEEeCC-CceEEEccCC--cEEEeeec-CCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeee
Q 023085 33 QTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VENFLSYV-NGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~-~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~ 107 (287)
.|. +++++++|+|||++.. +.|.+++++| ++.+.... .......|.+++...+ +..+++...
T Consensus 24 ~P~-gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------------ 90 (279)
T d1q7fa_ 24 EPS-GVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS------------ 90 (279)
T ss_dssp CEE-EEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG------------
T ss_pred Ccc-EEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC------------
Confidence 477 9999999999999865 5799999778 44442211 1122346777876654 555553211
Q ss_pred eccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec-cCCCCCcce
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNI 185 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i 185 (287)
....|.++++.......+. .....|.+++++++++ +|+++....++.+++.++.. ...+.. .....|.++
T Consensus 91 ----~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~---~~~~g~~~~~~~~~~i 162 (279)
T d1q7fa_ 91 ----PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFPNGV 162 (279)
T ss_dssp ----GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE---EEEEECTTTCSSEEEE
T ss_pred ----CccccccccccccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce---eeccccccccccccee
Confidence 2346888887633333332 3456789999999887 89999888899999865421 122221 122468889
Q ss_pred eeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEE
Q 023085 186 NLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGL 265 (287)
Q Consensus 186 ~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 265 (287)
++|++|++|++... .+.|.+++++|+.+..+..+ +. ++.+.+++
T Consensus 163 ~~d~~g~i~v~d~~----------------------------------~~~V~~~d~~G~~~~~~g~~-g~-~~~P~gia 206 (279)
T d1q7fa_ 163 VVNDKQEIFISDNR----------------------------------AHCVKVFNYEGQYLRQIGGE-GI-TNYPIGVG 206 (279)
T ss_dssp EECSSSEEEEEEGG----------------------------------GTEEEEEETTCCEEEEESCT-TT-SCSEEEEE
T ss_pred eeccceeEEeeecc----------------------------------ccceeeeecCCceeeeeccc-cc-ccCCcccc
Confidence 99999999999987 35899999999998888643 32 56789999
Q ss_pred Ee-CCEEEEEecCCC-eEEEEeC
Q 023085 266 QV-DNHLYVISLTSN-FIGKVQL 286 (287)
Q Consensus 266 ~~-~g~l~i~~~~~~-~i~~~~~ 286 (287)
.+ +|+|||+...++ +|.+|+-
T Consensus 207 vD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 207 INSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp ECTTCCEEEEECSSSCEEEEECT
T ss_pred cccCCeEEEEECCCCcEEEEECC
Confidence 87 689999987554 7888763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.4e-12 Score=105.90 Aligned_cols=220 Identities=10% Similarity=0.110 Sum_probs=149.5
Q ss_pred cEEEEecCCeEEEEE-C-CceEEEEeeCCccccCeEECC-CCcEEEEeCCC-ceEEEccCC------cEEEeeecCCccc
Q 023085 6 VIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG------VENFLSYVNGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~~-gi~~~~~~g------~~~~~~~~~~~~~ 75 (287)
.|.++. ...|.+++ + ............+. ++.+|. .++||.++... .|++.+.++ .+.+.. ...
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~~~~~~~-~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~----~~~ 76 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDI 76 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSC
T ss_pred EEEEEC-CCeEEEEECCCCcceeeeCCCCceE-EEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe----CCC
Confidence 466665 44699999 4 34344433444566 788886 45799998654 477766333 122211 124
Q ss_pred cccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..|.+|++|. .++||+++.. .+.|.+++++...... +......|.+++++|..+.||+++.
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~ 139 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 139 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred CCcceEEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc
Confidence 5788999996 5789998643 4578888877443333 3455678999999998888999986
Q ss_pred CC-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 154 WK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 154 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
.. .+|.++++++. ....+.......|.++++|.. ++||++...
T Consensus 140 ~~~~~I~r~~~dGs---~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~-------------------------------- 184 (266)
T d1ijqa1 140 GTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK-------------------------------- 184 (266)
T ss_dssp SSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred CCCcceeEeccCCC---ceecccccccceeeEEEeeccccEEEEecCC--------------------------------
Confidence 54 58999998763 233333333346999999975 579998765
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++.+|.....+.... .....+.++..++++||+++...+.|.+++.
T Consensus 185 --~~~I~~~~~dG~~~~~~~~~~-~~~~~p~~lav~~~~ly~td~~~~~I~~~~~ 236 (266)
T d1ijqa1 185 --LHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (266)
T ss_dssp --TTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred --cCEEEEEECCCCCEEEEEeCC-CcccccEEEEEECCEEEEEECCCCeEEEEEC
Confidence 358999999886544433222 2245688889899999999999999999874
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=3.2e-12 Score=103.56 Aligned_cols=216 Identities=12% Similarity=0.146 Sum_probs=149.6
Q ss_pred EEEEecCCeEEEEE-CCce-------EEEEeeCCccccCeEECC-CCcEEEEeCCC-ceEEEccCC--cEEEeeecCCcc
Q 023085 7 IYTATRDGWIKRLQ-DGTW-------VNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 7 l~~~~~~g~i~~~~-~~~~-------~~~~~~~~~~~~~i~~d~-dg~l~v~~~~~-gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
|+++ ..+.|.++. ++.. .....+...+. ++++|. .++||.++... .|.+.+.+| .+.+... .
T Consensus 4 Ll~s-~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~-~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----~ 77 (263)
T d1npea_ 4 LLFA-QTGKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----D 77 (263)
T ss_dssp EEEE-EEEEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----T
T ss_pred EEEe-CCCeEEEEECCCccccccccccccccCCCcEE-EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----c
Confidence 5555 556888887 4332 11222333455 788885 55799998664 488887444 5555322 1
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
...|.+|++|. .+.||+++.. .+.|.+++++....+.+ ...+..|.+++++|....+|+++
T Consensus 78 ~~~p~~iAvD~~~~~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~ 140 (263)
T d1npea_ 78 LGSPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD 140 (263)
T ss_dssp CCCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred cccccEEEEeccCCeEEEeccC-----------------CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEee
Confidence 35789999996 5689997533 45788888774433333 34467899999999999999998
Q ss_pred CCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 153 SWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 153 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
... .+|++.++++.. ...+....-..|.+|++|.. +.||++...
T Consensus 141 ~~~~~~~I~r~~~dG~~---~~~i~~~~~~~P~glaiD~~~~~lYw~d~~------------------------------ 187 (263)
T d1npea_ 141 WNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAG------------------------------ 187 (263)
T ss_dssp CCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETT------------------------------
T ss_pred cCCCCcEEEEecCCCCC---ceeeeeecccccceEEEeecCcEEEEEeCC------------------------------
Confidence 654 369999987532 22333233346899999965 579888765
Q ss_pred cCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 230 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 230 ~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|.+++.+|...+.+.. + ...+.++..++++||+++..++.|.+++.
T Consensus 188 ----~~~I~~~~~~g~~~~~v~~--~--~~~P~~lav~~~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 188 ----THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp ----TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred ----CCEEEEEECCCCCeEEEEC--C--CCCcEEEEEECCEEEEEECCCCEEEEEEC
Confidence 3589999999876665542 2 23577888889999999999999999986
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.46 E-value=4.1e-12 Score=105.06 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=115.9
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
.+.+++++++|+||+++.. .+.|++++++ ++...+......+++++++++|+ +|+++...+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~-----------------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~ 89 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNAD 89 (302)
T ss_dssp CEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECTT
T ss_pred CcCCEEECCCCCEEEEeCC-----------------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCCc
Confidence 5778999999999998643 5789999988 66666666667899999999998 899988888
Q ss_pred EEEEEEecCCCCcceeEEec-cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCce
Q 023085 157 RCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 235 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (287)
.+.+++..... ........ .....+++++++++|++|++... .+
T Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~----------------------------------~~ 134 (302)
T d2p4oa1 90 SIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSY----------------------------------RG 134 (302)
T ss_dssp SCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETT----------------------------------TT
T ss_pred eEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeeccc----------------------------------cc
Confidence 88888876432 22223322 22346889999999999999876 35
Q ss_pred EEEEECCCCcEEEEEEC-CCC------ccccceEEEEEeCCEEEEEecCCCeEEEEeCC
Q 023085 236 HLIHVAEDGTIIRNLVD-PTG------QLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 236 ~v~~~~~~g~~~~~~~~-~~~------~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.++++++++.....+.. +.. .....+..+..+++.||++....++|.+++++
T Consensus 135 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~ 193 (302)
T d2p4oa1 135 AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD 193 (302)
T ss_dssp EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred cceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccc
Confidence 88899887665444322 111 11223466777889999999999999999864
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=7.9e-11 Score=95.21 Aligned_cols=190 Identities=13% Similarity=0.120 Sum_probs=132.8
Q ss_pred CCCcEEEEe-cCCeEEEEE-CCc-eEEEEee-CCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DGT-WVNWKFI-DSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~~-~~~~~~~-~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
.++.||+++ ..+.|.+.+ ++. .+.+... ...|. ++++|. .++||+++.. +.|.+.+.+| .+.+... .
T Consensus 46 ~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~----~ 120 (263)
T d1npea_ 46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT----G 120 (263)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----S
T ss_pred CCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecc----c
Confidence 456788887 567898888 443 3333322 35677 999996 5589999865 4688888666 4444322 2
Q ss_pred ccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
+..|.++++|+ .|.+|+++.+ .....|++.+++...... +...+..|+++++++.++.|||++
T Consensus 121 l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 121 LVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp CSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred ccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEe
Confidence 35789999997 5678887533 123469999887433333 345678899999999988999999
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
...++|.++++++. ..+...... ..|.+|+++ +++||++...
T Consensus 186 ~~~~~I~~~~~~g~---~~~~v~~~~-~~P~~lav~-~~~lYwtd~~--------------------------------- 227 (263)
T d1npea_ 186 AGTHRAECLNPAQP---GRRKVLEGL-QYPFAVTSY-GKNLYYTDWK--------------------------------- 227 (263)
T ss_dssp TTTTEEEEEETTEE---EEEEEEECC-CSEEEEEEE-TTEEEEEETT---------------------------------
T ss_pred CCCCEEEEEECCCC---CeEEEECCC-CCcEEEEEE-CCEEEEEECC---------------------------------
Confidence 98899999998653 223333222 358899998 6789999977
Q ss_pred CceEEEEECCC-CcEEEEEE
Q 023085 233 GGAHLIHVAED-GTIIRNLV 251 (287)
Q Consensus 233 ~~~~v~~~~~~-g~~~~~~~ 251 (287)
.+.|.+++.. |+....+.
T Consensus 228 -~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 228 -TNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp -TTEEEEEETTTTEEEEEEC
T ss_pred -CCEEEEEECCCCccceEEC
Confidence 3589999986 55555554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.5e-10 Score=91.50 Aligned_cols=172 Identities=13% Similarity=0.100 Sum_probs=116.6
Q ss_pred CCCcEEEEe-cCCeEEEEE-CCc-----eEEEE-eeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC-c-EEEeeec
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DGT-----WVNWK-FIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG-V-ENFLSYV 70 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~~-----~~~~~-~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g-~-~~~~~~~ 70 (287)
..+.||+++ ..+.|.+.+ ++. .+... .....|. +|++|. .++||+++.. +.|.+.+.+| . ..+...
T Consensus 40 ~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~- 117 (266)
T d1ijqa1 40 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE- 117 (266)
T ss_dssp TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-
T ss_pred CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC-
Confidence 356788887 556788776 321 11222 2234567 899996 4579999866 4577777666 3 333222
Q ss_pred CCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEE
Q 023085 71 NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l 148 (287)
....|.+|++|+ .|.+|+++.+ ..+.|++.+++......+ ...+..|+++++++.++.|
T Consensus 118 ---~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~l 178 (266)
T d1ijqa1 118 ---NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 178 (266)
T ss_dssp ---TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred ---CCCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceeeEEEeeccccEE
Confidence 135788999997 6789987633 245799999874444443 3557889999999998899
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCCEEEEEec
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
||++...++|.++++++.. ....... ....|.+++++ +++||++...
T Consensus 179 Yw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td~~ 227 (266)
T d1ijqa1 179 YWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDII 227 (266)
T ss_dssp EEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred EEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEECC
Confidence 9999999999999987632 2222212 22357889998 5789999876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.29 E-value=2.6e-10 Score=93.72 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=121.1
Q ss_pred CeEEC-CCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTST-KEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d-~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+...| ++|+||..+.. +.|++++ .++ .+.+.. ...+.+++.+++|.+|++.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~------~~~~~~i~~~~dg~l~va~------------------- 76 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHAL------PFMGSALAKISDSKQLIAS------------------- 76 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC------SSCEEEEEEEETTEEEEEE-------------------
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC------CCCcEEEEEecCCCEEEEE-------------------
Confidence 55666 47789998855 5699999 566 554421 1356788999999999963
Q ss_pred CceEEEEeCCCCeeEEeecc-----ccccceEEEccCCCEEEEEeCC------CCEEEEEEecCCCCcceeEEeccCCCC
Q 023085 113 HGQLLKYDPSSNITTLVADG-----FYFANGVALSRDEDYVVVCESW------KFRCRKYWLKGERKGKLETFAENLPGA 181 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~l~v~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
..+++++|+++++++.+... ...++.+.++++|+ +|+++.. ...+++++ .+ +...... ....
T Consensus 77 ~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~--~g---~~~~~~~-~~~~ 149 (295)
T d2ghsa1 77 DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KG---KVTKLFA-DISI 149 (295)
T ss_dssp TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TT---EEEEEEE-EESS
T ss_pred eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec--CC---cEEEEee-ccCC
Confidence 34799999998888766432 23578889999998 8888642 22445443 22 2222221 1235
Q ss_pred CcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--Cc----EEEEEECCC
Q 023085 182 PDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GT----IIRNLVDPT 254 (287)
Q Consensus 182 ~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~----~~~~~~~~~ 254 (287)
|++++++++++ +|++... .+.|++++.+ .. ....+....
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~----------------------------------~~~I~~~~~d~~~~~~~~~~~~~~~~~ 195 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTK----------------------------------VNRLMRVPLDARTGLPTGKAEVFIDST 195 (295)
T ss_dssp EEEEEECTTSCEEEEEETT----------------------------------TCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred cceeeecCCCceEEEeecc----------------------------------cceeeEeeecccccccccceEEEeccC
Confidence 88999999885 8888765 3577777533 21 122222222
Q ss_pred CccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 255 GQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 255 ~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+. ...+.+++.| +|+||++.+.+++|.+|+-
T Consensus 196 ~~-~g~pdG~~vD~~GnlWva~~~~g~V~~~dp 227 (295)
T d2ghsa1 196 GI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 227 (295)
T ss_dssp TS-SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred cc-cccccceEEcCCCCEEeeeeCCCceEEecC
Confidence 21 3457888887 7999999999999999973
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.28 E-value=1.7e-08 Score=81.41 Aligned_cols=224 Identities=12% Similarity=0.126 Sum_probs=143.5
Q ss_pred CCCCCc-EEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCc-eEEEc-cCC-cEEEeeecCC
Q 023085 1 MDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 1 ~d~~G~-l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~-~~g-~~~~~~~~~~ 72 (287)
+++||. ||++. .++.|..|+ +++..........|. ++++++++. ++++..... +..++ .++ .......
T Consensus 39 ~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 114 (301)
T d1l0qa2 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--- 114 (301)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecccccceeeeeccc---
Confidence 367885 77765 678999999 555544444445667 899999996 555554433 55555 445 2222121
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEe
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
...+..+.+.++|..++.. ......+..++..++...........+..++++++++.+|++.
T Consensus 115 --~~~~~~~~~~~dg~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (301)
T d1l0qa2 115 --GKSPLGLALSPDGKKLYVT----------------NNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN 176 (301)
T ss_dssp --SSSEEEEEECTTSSEEEEE----------------ETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred --cccceEEEeecCCCeeeee----------------eccccceeeeeccccceeeecccCCCceEEEeeccccceeeec
Confidence 2356778899888755421 1224567777777666555444556678889999999999998
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
.....+..++.... +..... .....|.+++++++|+ +|++...
T Consensus 177 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~-------------------------------- 220 (301)
T d1l0qa2 177 FDSMSISVIDTVTN---SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVD-------------------------------- 220 (301)
T ss_dssp TTTTEEEEEETTTT---EEEEEE-ECSSEEEEEEECTTSSEEEEEEEC--------------------------------
T ss_pred ccccccccccccce---eeeecc-cccCCcceeecccccccccccccc--------------------------------
Confidence 87776666664322 111111 2334588899999885 5566543
Q ss_pred CCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 023085 232 GGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 232 ~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~~ 287 (287)
...+.|..+|.. ++.+..+.... .+..+... +.+||++....+.|.++|+.
T Consensus 221 ~~~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 221 KYFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp SSCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceeeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 113578888865 56666666422 36677764 45799999889999999863
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.19 E-value=5e-08 Score=78.55 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=112.7
Q ss_pred cEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC--cEEEeeecCCccccc
Q 023085 6 VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 6 ~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
.+|++. .++.|..+| +++..........|. ++++++||+ ||++... +.|.++| .++ +..+. . ...
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-~-----~~~ 75 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-A-----GSS 75 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-C-----SSS
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-c-----ccc
Confidence 478875 678899999 677666555566788 999999996 7777644 4588898 666 33332 1 235
Q ss_pred cceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 78 ANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
|.++++++++.. +++. .....+..++..+++..........+..++++|+++.++++.....
T Consensus 76 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~ 138 (301)
T d1l0qa2 76 PQGVAVSPDGKQVYVTN-----------------MASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK 138 (301)
T ss_dssp EEEEEECTTSSEEEEEE-----------------TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred ccccccccccccccccc-----------------cccceeeecccccceeeeeccccccceEEEeecCCCeeeeeecccc
Confidence 788999998864 4432 2245677778777776555555566788899999999999888777
Q ss_pred EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEec
Q 023085 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 199 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~ 199 (287)
.+..++..... ....+ .....|..+++.++++ +|++...
T Consensus 139 ~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 178 (301)
T d1l0qa2 139 TVSVINTVTKA--VINTV--SVGRSPKGIAVTPDGTKVYVANFD 178 (301)
T ss_dssp EEEEEETTTTE--EEEEE--ECCSSEEEEEECTTSSEEEEEETT
T ss_pred ceeeeeccccc--eeeec--ccCCCceEEEeeccccceeeeccc
Confidence 88888754321 11111 1223477888888775 6666544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.3e-07 Score=77.20 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=106.5
Q ss_pred CcEEEEe-cCCeEEEEE---CCceEEEE--eeCCccccCeEECCCCc-EEEEeCC-CceEEEc--cCC-cEEEeeecCCc
Q 023085 5 GVIYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSYVNGS 73 (287)
Q Consensus 5 G~l~~~~-~~g~i~~~~---~~~~~~~~--~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~--~~g-~~~~~~~~~~~ 73 (287)
-.+|+++ .++.|..|+ .+..+... ..+..+. +++++|||+ ||++... ..|..++ ..+ ...+.....
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-- 80 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-- 80 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--
Confidence 3688888 778888887 44444333 4456677 999999996 7787754 4465555 333 333322111
Q ss_pred cccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE---eeccccccceEEEccCCCEEE
Q 023085 74 KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~ 149 (287)
....|..++++++|+ |++++.. ...+..++........ .......++++.++|+++.++
T Consensus 81 ~~~~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~ 143 (333)
T d1ri6a_ 81 LPGSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW 143 (333)
T ss_dssp CSSCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred cCCCceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceeee
Confidence 124678899999997 5664322 3344444433233222 223345678899999999999
Q ss_pred EEeCCCCEEEEEEecCCCCcc--ee-EEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGK--LE-TFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.+.....+..++........ .. .........|..+++++++........
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~ 196 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 196 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc
Confidence 999888889999875432111 11 111122235788999998876555543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.03 E-value=3.4e-07 Score=76.91 Aligned_cols=237 Identities=14% Similarity=0.060 Sum_probs=131.7
Q ss_pred CCCCc-EEEEecCCeEEEEE---CCceEEEE--eeCCccccCeEECCCCc-EEEEeCC--C-ceEEEc--cCC--cEEEe
Q 023085 2 DKNGV-IYTATRDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA--N-GLHKVS--EDG--VENFL 67 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~---~~~~~~~~--~~~~~~~~~i~~d~dg~-l~v~~~~--~-gi~~~~--~~g--~~~~~ 67 (287)
+++|. ||+++ .+.+..|. ++...... .....|. .++++++++ +|++... . .++.+. .++ .....
T Consensus 48 s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~ 125 (365)
T d1jofa_ 48 DHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFS 125 (365)
T ss_dssp CTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEE
T ss_pred cCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEe
Confidence 56674 56654 45676665 44443322 2345677 888999995 5666432 1 243332 222 11111
Q ss_pred -----------eecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeC-CCCeeEEee----
Q 023085 68 -----------SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-SSNITTLVA---- 130 (287)
Q Consensus 68 -----------~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~---- 130 (287)
....-+....+++++++++|+ +|+++.+ ...|+.++. .++.+....
T Consensus 126 ~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~g~~~~~~~~~~ 188 (365)
T d1jofa_ 126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEVELVGSVDA 188 (365)
T ss_dssp ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEEC
T ss_pred eeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCCCceeeccceee
Confidence 100111123678999999997 7776533 335555532 234433221
Q ss_pred -ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEe--c-cC-------------CCCCcceeeCCCCC-
Q 023085 131 -DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA--E-NL-------------PGAPDNINLAPDGT- 192 (287)
Q Consensus 131 -~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~--~-~~-------------~~~~~~i~~d~~G~- 192 (287)
.....|..++++|+++.+|++....+.|..|+.+..+........ . .. ...+..+.++++|+
T Consensus 189 ~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 268 (365)
T d1jofa_ 189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCE
Confidence 224568889999999999999999999999998754322111100 0 00 01245688999996
Q ss_pred EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE---ECC-CCccccceEEEEE--
Q 023085 193 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL---VDP-TGQLMSFVTSGLQ-- 266 (287)
Q Consensus 193 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~---~~~-~~~~~~~~~~~~~-- 266 (287)
||++....... ....-..++++..+...... ..+ .|. .+..+.+
T Consensus 269 lyvsnr~~~~~---------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~---~p~~i~~~p 318 (365)
T d1jofa_ 269 MFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---HSNAVSPCP 318 (365)
T ss_dssp EEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCCT---TCCCEEECT
T ss_pred EEEEcccCCCc---------------------------cceEEEEEEecCCCceeeEeEeeEEEcCCC---CccEEEecC
Confidence 67765431000 01112455666666543322 221 222 3444554
Q ss_pred -eCCEEEEEecCCCeEEEEeCC
Q 023085 267 -VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 267 -~~g~l~i~~~~~~~i~~~~~~ 287 (287)
++..||+++..++.|.+|+++
T Consensus 319 ~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 319 WSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEEEe
Confidence 346699999999999998753
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.8e-07 Score=76.42 Aligned_cols=231 Identities=13% Similarity=0.144 Sum_probs=129.1
Q ss_pred CCCCC-cEEEEe-cCCeEEEEE---C-CceEEE--EeeCCccccCeEECCCCc-EEEEeCCCc-eEEEc-cCC-cEEEee
Q 023085 1 MDKNG-VIYTAT-RDGWIKRLQ---D-GTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-EDG-VENFLS 68 (287)
Q Consensus 1 ~d~~G-~l~~~~-~~g~i~~~~---~-~~~~~~--~~~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~-~~g-~~~~~~ 68 (287)
+.+|| .||++. .++.|..|+ . ...+.. ......|. ++++++||+ |+++....+ +..++ ... ......
T Consensus 44 ~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~ 122 (333)
T d1ri6a_ 44 VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeecccCCCceeeeccccccceeccc
Confidence 36788 488877 468888877 2 222322 22345677 899999996 777765543 44454 333 222222
Q ss_pred ecCCccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEE------eeccccccceEE
Q 023085 69 YVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTL------VADGFYFANGVA 140 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~------~~~~~~~~~~i~ 140 (287)
... ....+.++.++++++. ++++. ....+..++..... ... .......|..++
T Consensus 123 ~~~--~~~~~~~v~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~ 183 (333)
T d1ri6a_ 123 VVE--GLDGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV 183 (333)
T ss_dssp EEC--CCTTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred ccC--CCccceEEEeeecceeeecccc-----------------ccceeeEEEeccCCcceeeeceeeeeecCCCccEEE
Confidence 111 1245778889998874 44321 12344444433221 111 112234577899
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCC--CCcceeEEecc-----CCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcch
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN-----LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~--~~~~~~~~~~~-----~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~ 212 (287)
+++++..+|+.....+....++.... ........... ....+..++++++|+ +|++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~------------- 250 (333)
T d1ri6a_ 184 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------------- 250 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-------------
T ss_pred EeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc-------------
Confidence 99999999999887777777765432 11111111110 112355678888886 5544433
Q ss_pred hHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC-CCCccccceEEEEE--eCCEEEEEecCCCeEEEEeC
Q 023085 213 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~ 286 (287)
.....++.+++++........ +.+ ..+..+.. ++..||+++..++.|.+|++
T Consensus 251 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 251 -------------------ASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp -------------------TTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred -------------------CCeEEEEEEcCCCCEEEEEEEeCCC---CCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 113456667766654443321 122 23445555 45669999988898888765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.97 E-value=6.5e-07 Score=75.14 Aligned_cols=187 Identities=11% Similarity=0.046 Sum_probs=102.6
Q ss_pred cEEEEe--cCCeEEEEE----CCceEEEEe---eCCccccCeEECCCCc-EEEEeCCCceE--EEccCC-cEEEeeecCC
Q 023085 6 VIYTAT--RDGWIKRLQ----DGTWVNWKF---IDSQTLVGLTSTKEGH-LIICDNANGLH--KVSEDG-VENFLSYVNG 72 (287)
Q Consensus 6 ~l~~~~--~~g~i~~~~----~~~~~~~~~---~~~~~~~~i~~d~dg~-l~v~~~~~gi~--~~~~~g-~~~~~~~~~~ 72 (287)
+|++|| ..++|+.+. +++++.... +...+.+.|+++++++ ||++... .+. .+++++ .........+
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCC-cEEEEEEeCCCCeEEEeeecCC
Confidence 589998 466897776 344543322 2222222699999996 6777643 444 444455 4433222111
Q ss_pred ccccccceEEEcCCCc-EEEEcCCCCCCCc-ceeeeeeccCCCceEEEEeCCCCeeEEe-----eccccccceEEEccCC
Q 023085 73 SKLRFANDVVEASDGS-LYFTVSSSKYLPH-EYCLDILEGKPHGQLLKYDPSSNITTLV-----ADGFYFANGVALSRDE 145 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~ 145 (287)
..|..+++++++. +|++... ++.. .+..........+.++.++.. +..... .+....+++++++|||
T Consensus 83 ---~~p~~v~~~~~~~~~~v~~a~--~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~h~h~v~~sPdG 156 (365)
T d1jofa_ 83 ---GHPRANDADTNTRAIFLLAAK--QPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp ---SSGGGGCTTSCCEEEEEEECS--STTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred ---CCcEEEEECCCCCEEEEEEec--CCCCEEEEeEccCCCCcceeEeeeec-ceecCcccCcccCCCCcceEEEECCCC
Confidence 3567778888875 5665432 1100 000000001112234444432 222211 1123457899999999
Q ss_pred CEEEEEeCCCCEEEEEEecCC-CCcceeEEec-cCCCCCcceeeCCCCC-EEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLKGE-RKGKLETFAE-NLPGAPDNINLAPDGT-FWIAIIK 199 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~i~~d~~G~-lwv~~~~ 199 (287)
+++|+++...++|++|+.+.. .......... .....|.+++++++|+ +|++...
T Consensus 157 ~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~ 213 (365)
T d1jofa_ 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence 999999998899999986532 2222222221 2234689999999997 5565543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.89 E-value=8.9e-07 Score=75.99 Aligned_cols=174 Identities=9% Similarity=-0.085 Sum_probs=107.2
Q ss_pred cEEEEe--cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCC-ccccc
Q 023085 6 VIYTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNG-SKLRF 77 (287)
Q Consensus 6 ~l~~~~--~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~-~~~~~ 77 (287)
++++.+ .+|.|..+| +++..........|. +++++|||+ +|++.....+..++ .++ .+.......+ .+...
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~ 110 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence 354333 788999999 566655555555677 999999996 66676555688888 555 3332221111 11222
Q ss_pred cceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec------------cccccceEEEccC
Q 023085 78 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------------GFYFANGVALSRD 144 (287)
Q Consensus 78 ~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~ 144 (287)
+...++.+||. |+++.. ..+.+..+|..+++...... ......+++++++
T Consensus 111 ~~s~~~SpDG~~l~vs~~-----------------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 173 (432)
T d1qksa2 111 ETSKMEGWEDKYAIAGAY-----------------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 173 (432)
T ss_dssp EECCSTTCTTTEEEEEEE-----------------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred EEecccCCCCCEEEEEcC-----------------CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCC
Confidence 22334456886 567532 24578888887776544321 1122346788999
Q ss_pred CCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEec
Q 023085 145 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 199 (287)
Q Consensus 145 ~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~ 199 (287)
+..++++....+.+..++..+.+......+ .....|.+++++++|+ +++++..
T Consensus 174 g~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~ 227 (432)
T d1qksa2 174 RPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA 227 (432)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG
T ss_pred CCEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEeccc
Confidence 999999988888999998754322222222 1223588999999997 5555544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.82 E-value=4.2e-06 Score=67.80 Aligned_cols=148 Identities=11% Similarity=-0.013 Sum_probs=91.9
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEee---CCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC--cEEEeeecCCccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~---~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
.++.++.++.|..|| +++....... ...|. +++++|||+ +|++... +.|..+| .++ ...+.........
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 466777889999999 5554433322 24567 999999996 5677544 4588999 777 3333322222233
Q ss_pred cccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+.++++.+++. ++++....... .+ ........+..+|..+++..........+.+++++++|+.+|++..
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~--~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLE--LT----HFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEEC--SS----CEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS-
T ss_pred cceeeEEEcCCCcEEEEeecCCcce--ee----eccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC-
Confidence 5678899999886 45543210000 00 0111235677788887776655555567889999999998988752
Q ss_pred CCEEEEEEe
Q 023085 155 KFRCRKYWL 163 (287)
Q Consensus 155 ~~~l~~~~~ 163 (287)
.+..++.
T Consensus 155 --~~~~~d~ 161 (337)
T d1pbyb_ 155 --DLHVMDP 161 (337)
T ss_dssp --SEEEEET
T ss_pred --Ccceeee
Confidence 2444554
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.79 E-value=3.3e-06 Score=68.87 Aligned_cols=176 Identities=9% Similarity=-0.046 Sum_probs=97.4
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEE-EeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCcc
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~-~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
+++|...+...++.|..++ ++..... ........ .+++.|+|++.++ ...+.|..++ .++ ....... . .
T Consensus 26 ~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~--~-~ 101 (311)
T d1nr0a1 26 TPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP--V-F 101 (311)
T ss_dssp CTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE--C-S
T ss_pred cCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeeccccccccccc--c-c
Confidence 4667544434566788888 4433333 22233334 8889999987655 4334566666 444 2221111 1 1
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+.++++.+++.++++... .....+..++.++++.. .+.........++|+|+++.++++..
T Consensus 102 ~~~v~~v~~s~d~~~l~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 102 SGPVKDISWDSESKRIAAVGE---------------GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166 (311)
T ss_dssp SSCEEEEEECTTSCEEEEEEC---------------CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred cCccccccccccccccccccc---------------cccccccccccccccccccccccccccccccccccceeeecccc
Confidence 235778999999987765211 01112333343434322 22222334577889999987777766
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.|..|+.... +..............++++++|++.++...
T Consensus 167 ~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~ 209 (311)
T d1nr0a1 167 DDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209 (311)
T ss_dssp TTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccc---ccccccccccccccccccCccccccccccc
Confidence 6678889986532 121111112223567888999987766544
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3e-05 Score=63.33 Aligned_cols=219 Identities=11% Similarity=0.011 Sum_probs=128.9
Q ss_pred CCCCc-EEEEecCCeEEEEE-C-CceEEEE--ee-CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeecCC
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-D-GTWVNWK--FI-DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~-~~~~~~~--~~-~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
.++|. |..++.+|.|..|+ . ....... .. ..... .+++.+++.+.++ .....+..++ .++ .......
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~--- 181 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG--- 181 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---
T ss_pred cCCCCEEEEeeccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc---
Confidence 35664 55667889999898 3 2222111 11 12223 6778899876655 4335677787 666 3332211
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEe
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
....+..+++.+++...++ +...+.+..+|.++++.............++++|+++.++++.
T Consensus 182 -~~~~v~~l~~s~~~~~~~~-----------------~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 243 (337)
T d1gxra_ 182 -HTDGASCIDISNDGTKLWT-----------------GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred -ccccccccccccccccccc-----------------ccccccccccccccceeecccccccceEEEEEcccccccceec
Confidence 1235677888888876553 2235678888887776443333334556788999998776665
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
. .+.+..++...... .... ........+++.++|++.++...
T Consensus 244 ~-d~~i~i~d~~~~~~--~~~~--~~~~~i~~v~~s~~g~~l~s~s~--------------------------------- 285 (337)
T d1gxra_ 244 E-SSNVEVLHVNKPDK--YQLH--LHESCVLSLKFAYCGKWFVSTGK--------------------------------- 285 (337)
T ss_dssp T-TSCEEEEETTSSCE--EEEC--CCSSCEEEEEECTTSSEEEEEET---------------------------------
T ss_pred c-cccccccccccccc--cccc--ccccccceEEECCCCCEEEEEeC---------------------------------
Confidence 4 56788888754321 1111 12234567888999987766554
Q ss_pred CceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 233 GGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 233 ~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++. .++.+..+... ..+..+... +++..+++-....|.+++|
T Consensus 286 -Dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 286 -DNLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -TSEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -CCeEEEEECCCCCEEEEccCC-----CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 246666764 46666665532 246666665 4554444444567777764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.71 E-value=1.6e-06 Score=69.69 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=98.9
Q ss_pred CCCCcEEEEecCCeEEEEE-CC-ce---E-EEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCCcEEEeeecCCccc
Q 023085 2 DKNGVIYTATRDGWIKRLQ-DG-TW---V-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~~-~~---~-~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g~~~~~~~~~~~~~ 75 (287)
.++|.++.+..++.+..++ .+ .. . ........+. .+++.++|++.++.....+..++......... .
T Consensus 64 ~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~------~ 136 (299)
T d1nr0a2 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDIAVAACYKHIAIYSHGKLTEVPI------S 136 (299)
T ss_dssp CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSCEEEEESSEEEEEETTEEEEEEC------S
T ss_pred eccceeecccceeeEEEeccCCcccccccccccccccccc-cccccccccccccccccccccccccccccccc------c
Confidence 4677888877888888887 21 11 1 1122233445 78888999877766555566665322222211 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
..+..+++.+++.+.++ +...+.|..+|.++++..... ........++++|+++.++.+.
T Consensus 137 ~~~~~~~~s~~~~~l~~-----------------g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 198 (299)
T d1nr0a2 137 YNSSCVALSNDKQFVAV-----------------GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD- 198 (299)
T ss_dssp SCEEEEEECTTSCEEEE-----------------EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-
T ss_pred ccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 23456788888876664 223566777776655544321 2233456788999998776665
Q ss_pred CCCEEEEEEecCCC-CcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.|..|+..... ......+. .-......+++.++|++.++...
T Consensus 199 ~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 199 QSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp TTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccceEEEcC
Confidence 45679999875421 11111111 01123456788999976665543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.65 E-value=2.2e-05 Score=63.75 Aligned_cols=225 Identities=14% Similarity=0.066 Sum_probs=130.8
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCce-EEE-EeeCCccccCeEECCCCcEEEEeCC---CceEEEc-cCC--cEEEeeec
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTW-VNW-KFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG--VENFLSYV 70 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~-~~~-~~~~~~~~~~i~~d~dg~l~v~~~~---~gi~~~~-~~g--~~~~~~~~ 70 (287)
.++|. |..|+.+|.|..|+ .+.. ... ......+...+++.++++++++... .-+.+++ ..+ ...+..
T Consensus 67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-- 144 (311)
T d1nr0a1 67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG-- 144 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC--
T ss_pred eCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccc--
Confidence 46775 44566889999998 3322 121 2222223338899999976655322 1244455 444 222211
Q ss_pred CCccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-ccccceEEEccCCCEE
Q 023085 71 NGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYV 148 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l 148 (287)
....+..+++.+++.. +++ +...+.|..+|.++++....... ......++++|+++.+
T Consensus 145 ---h~~~v~~v~~~~~~~~~l~s-----------------gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l 204 (311)
T d1nr0a1 145 ---QARAMNSVDFKPSRPFRIIS-----------------GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 204 (311)
T ss_dssp ---CSSCEEEEEECSSSSCEEEE-----------------EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ---cccccccccccccceeeecc-----------------cccccccccccccccccccccccccccccccccCcccccc
Confidence 1235678889888864 443 12346788888876665443322 3345788899999966
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEecc---C---CCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCC
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAEN---L---PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 222 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (287)
+.+. ..+.+..|+..... ....+... . .+....++++++|++.++...
T Consensus 205 ~~~~-~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~----------------------- 258 (311)
T d1nr0a1 205 ASTG-GDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA----------------------- 258 (311)
T ss_dssp EEEE-TTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-----------------------
T ss_pred cccc-cccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeC-----------------------
Confidence 6665 45678888865421 11111100 1 122456888899886665543
Q ss_pred ccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeCC
Q 023085 223 KLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|..+|.+ ++.+..+..... ......++...++.|+.++. .+.|..+|++
T Consensus 259 -----------Dg~v~iwd~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~l~s~s~-dG~i~~wd~d 311 (311)
T d1nr0a1 259 -----------DKTIKIWNVATLKVEKTIPVGTR-IEDQQLGIIWTKQALVSISA-NGFINFVNPE 311 (311)
T ss_dssp -----------TSEEEEEETTTTEEEEEEECCSS-GGGCEEEEEECSSCEEEEET-TCCEEEEETT
T ss_pred -----------CCeEEEEECCCCcEEEEEECCCC-ccceEEEEEecCCEEEEEEC-CCEEEEEeCC
Confidence 2467777754 667777765332 23344556666777877774 5788888764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.60 E-value=2.6e-06 Score=68.35 Aligned_cols=173 Identities=19% Similarity=0.275 Sum_probs=99.5
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~ 75 (287)
.++|. |..++.+|.|..|+ +++...... ....++..+++.++|+++++.....+..++ ... ....... .....
T Consensus 21 s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~-~~~~~ 99 (299)
T d1nr0a2 21 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLS 99 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC-EEECS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccc-ccccc
Confidence 46774 55667889999999 455433321 222333378899999998887666677776 322 1111000 00112
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..+..+++.++|.+.++. ..+.+..++.. +...... ......++++|+++.+.+.. ..
T Consensus 100 ~~~~~~~~s~~g~~~~~~------------------~~~~i~~~~~~--~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~d 157 (299)
T d1nr0a2 100 SQPLGLAVSADGDIAVAA------------------CYKHIAIYSHG--KLTEVPI-SYNSSCVALSNDKQFVAVGG-QD 157 (299)
T ss_dssp SCEEEEEECTTSSCEEEE------------------ESSEEEEEETT--EEEEEEC-SSCEEEEEECTTSCEEEEEE-TT
T ss_pred cccccccccccccccccc------------------ccccccccccc--ccccccc-cccccccccccccccccccc-cc
Confidence 345678888888866642 23456666643 3222221 22345678899998766665 45
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..|++.+.+........ -...+..+++++++++.++...
T Consensus 158 g~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~ 199 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQ 199 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEE--CSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccc--cccccccccccccccccccccc
Confidence 78999998654322222221 2234567888888876655543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.59 E-value=3.5e-05 Score=65.36 Aligned_cols=173 Identities=6% Similarity=-0.056 Sum_probs=101.8
Q ss_pred EEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCC-ccccccc
Q 023085 7 IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNG-SKLRFAN 79 (287)
Q Consensus 7 l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~-~~~~~~~ 79 (287)
++++. .+|.|..+| +++..........+. +++++|||+ ||++...+.+..+| .++ .........+ .+...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 44433 789999999 566554444445677 999999996 56666555688888 666 3333221111 1122233
Q ss_pred eEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc------------ccccceEEEccCCC
Q 023085 80 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFANGVALSRDED 146 (287)
Q Consensus 80 ~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~ 146 (287)
++++.+||. ++++.. ..+.+..+|..+++....... ......++.++++.
T Consensus 113 s~~~spDG~~l~v~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~ 175 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 175 (426)
T ss_dssp CCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred eeeecCCCCEEEEeec-----------------CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence 344456786 456421 234677777776654433211 11223466788888
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.++++....+.+..++............ .....|.++.++++|++++....
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~ 226 (426)
T d1hzua2 176 EFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLADGGWDSSHRYFMTAAN 226 (426)
T ss_dssp EEEEEETTTTEEEEEECSSSSSCEEEEE--ECCSSEEEEEECTTSCEEEEEET
T ss_pred EEEEecCCCCeEEEEEeccccceeeEEe--ccCCccEeeeECCCCcEEEeeee
Confidence 8888888777777776543322222111 22235788999999987766654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.47 E-value=4.5e-05 Score=61.64 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=59.0
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEe-e-CCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-c-EEEeee-c
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKF-I-DSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSY-V 70 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~-~-~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~-~~~~~~-~ 70 (287)
.++| .|.+++.++.|..|| +++...... + ...|. +++++|||+ +|++... +.|..+| .++ . ..+... .
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~-~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~ 83 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 83 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcc-eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence 4566 455677889999999 565544333 2 34577 999999996 6777644 4588898 677 3 333221 1
Q ss_pred CCccccccceEEEcCCCc-EEEEc
Q 023085 71 NGSKLRFANDVVEASDGS-LYFTV 93 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~-l~v~~ 93 (287)
.......|..++++++|. +|++.
T Consensus 84 ~~~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 84 PGEVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEE
T ss_pred ccccCCceEEEEEecCCCEEEEEe
Confidence 112234678899999985 66653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.43 E-value=1.3e-05 Score=68.52 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=109.0
Q ss_pred CCCCcEEEEeCCC-ceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCce
Q 023085 41 TKEGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQ 115 (287)
Q Consensus 41 d~dg~l~v~~~~~-gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~ 115 (287)
+.++-++|+.... .|..+| .++ +..+. . + ..|.++++.+||+ +|++. ..+.
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~-~--g---~~~~~v~fSpDG~~l~~~s------------------~dg~ 84 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLD-T--G---YAVHISRLSASGRYLFVIG------------------RDGK 84 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEE-C--S---SCEEEEEECTTSCEEEEEE------------------TTSE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEe-C--C---CCeeEEEECCCCCEEEEEc------------------CCCC
Confidence 3333345665553 477888 666 44442 1 2 3588999999997 45432 3467
Q ss_pred EEEEeCCCCeeEEe--eccccccceEEE----ccCCCEEEEEeCCCCEEEEEEecCCCCcceeEE----ec----cCCCC
Q 023085 116 LLKYDPSSNITTLV--ADGFYFANGVAL----SRDEDYVVVCESWKFRCRKYWLKGERKGKLETF----AE----NLPGA 181 (287)
Q Consensus 116 v~~~~~~~~~~~~~--~~~~~~~~~i~~----~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~----~~----~~~~~ 181 (287)
+..+|..+++.... ......+.++++ +|||+.||++....+.+..+|.+..+....... .. ...+.
T Consensus 85 v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
T d1qksa2 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164 (432)
T ss_dssp EEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred EEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc
Confidence 88888766543222 122334556554 569999999998889999999764321111000 00 01123
Q ss_pred CcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccc
Q 023085 182 PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSF 260 (287)
Q Consensus 182 ~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~ 260 (287)
+..++++++|..|+.+... .+.+..++.. ++.......+.+. .
T Consensus 165 ~~~v~~s~dg~~~~vs~~~---------------------------------~~~i~~~d~~~~~~~~~~~i~~g~---~ 208 (432)
T d1qksa2 165 VAAILASHYRPEFIVNVKE---------------------------------TGKILLVDYTDLNNLKTTEISAER---F 208 (432)
T ss_dssp EEEEEECSSSSEEEEEETT---------------------------------TTEEEEEETTCSSEEEEEEEECCS---S
T ss_pred eeEEEECCCCCEEEEEEcc---------------------------------CCeEEEEEccCCCcceEEEEcccC---c
Confidence 3456778888877666541 2466666643 4443333222232 3
Q ss_pred eEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 261 VTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 261 ~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
+..+..+ +.++++++..++.|.++++
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccceECCCCCEEEEeccccceEEEeec
Confidence 4555554 4568999999999988875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.37 E-value=3e-05 Score=62.78 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=84.2
Q ss_pred CeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
|+++.++|+++++ +..+.|..+| .++ +..+.-. ....|.++++++||+ +|+++ .
T Consensus 1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~----~~~~p~~l~~spDG~~l~v~~-----------------~ 59 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP----DKFGPGTAMMAPDNRTAYVLN-----------------N 59 (346)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS----SCCSSCEEEECTTSSEEEEEE-----------------T
T ss_pred CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC----CCCCcceEEECCCCCEEEEEE-----------------C
Confidence 4677888876665 5446799999 666 3333211 123578999999986 56753 2
Q ss_pred CCceEEEEeCCCCeeEEeec-c------ccccceEEEccCCCEEEEEeC-----------CCCEEEEEEecCCCCcceeE
Q 023085 112 PHGQLLKYDPSSNITTLVAD-G------FYFANGVALSRDEDYVVVCES-----------WKFRCRKYWLKGERKGKLET 173 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~-~------~~~~~~i~~~~~~~~l~v~~~-----------~~~~l~~~~~~~~~~~~~~~ 173 (287)
..+.|..+|..+++...... . ...|.+++++|||+.+|++.. ....+..++....+......
T Consensus 60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 139 (346)
T d1jmxb_ 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139 (346)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence 35689999998887543221 1 235788999999999999864 23445556654322111111
Q ss_pred EeccCCCCCcceeeCCCCCEEEEEe
Q 023085 174 FAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 174 ~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
.. ..+.....+....++.++++..
T Consensus 140 ~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T d1jmxb_ 140 TF-PMPRQVYLMRAADDGSLYVAGP 163 (346)
T ss_dssp EE-ECCSSCCCEEECTTSCEEEESS
T ss_pred ee-eccCceEEEEecCCCEEEEeCC
Confidence 11 1122233455556777777653
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=0.00076 Score=55.51 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=83.1
Q ss_pred CCCCcEE-EEecCCeEEEEE--CCceEEEEeeC--CccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeecCCc
Q 023085 2 DKNGVIY-TATRDGWIKRLQ--DGTWVNWKFID--SQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~l~-~~~~~g~i~~~~--~~~~~~~~~~~--~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~ 73 (287)
+++|.+. +++.++.|..|+ .++.+...... ..++..+++.|++++.++ .....|...+ .++ ........ .
T Consensus 16 s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~ 93 (371)
T d1k8kc_ 16 NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL--R 93 (371)
T ss_dssp CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC--C
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc--c
Confidence 5788554 566888888888 45554443321 233338899999986654 3334466666 555 44332211 1
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe--ecc-ccccceEEEccCCCEEEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADG-FYFANGVALSRDEDYVVV 150 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~-~~~~~~i~~~~~~~~l~v 150 (287)
....+.++.+++++..+++... .+.-.+|.++......... ... ......++++|+++.|..
T Consensus 94 ~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s 158 (371)
T d1k8kc_ 94 INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158 (371)
T ss_dssp CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred ccccccccccccccccceeecc---------------cCcceeeeeecccccccccccccccccccccccccccccceec
Confidence 2245788999999986664211 1223466666543332211 111 223456789999986655
Q ss_pred EeCCCCEEEEEEec
Q 023085 151 CESWKFRCRKYWLK 164 (287)
Q Consensus 151 ~~~~~~~l~~~~~~ 164 (287)
+. ..+.+..|+..
T Consensus 159 ~s-~D~~v~v~~~~ 171 (371)
T d1k8kc_ 159 GS-CDFKCRIFSAY 171 (371)
T ss_dssp EE-TTSCEEEEECC
T ss_pred cc-cCcEEEEEeec
Confidence 54 45678888864
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=0.00069 Score=54.84 Aligned_cols=173 Identities=12% Similarity=0.127 Sum_probs=96.7
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCc-e---EEEEee-CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC-cEEEeeec
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGT-W---VNWKFI-DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYV 70 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~-~---~~~~~~-~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g-~~~~~~~~ 70 (287)
.++|. |..+ .+|.|..|+ .+. . ...... ...++..+++.++|++.++ ...+.|..++ ... ........
T Consensus 60 s~~g~~latg-~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 138 (337)
T d1gxra_ 60 SNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp CSSSSEEEEE-CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred CCCCCEEEEE-ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccc
Confidence 56775 4444 467888888 221 1 111111 1122337899999976554 4334466666 333 22211111
Q ss_pred CCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEEccCCCEEE
Q 023085 71 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVV 149 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~ 149 (287)
. ....+..+++.+++.+.++. ...+.+..++..+++...... .......++++++++.++
T Consensus 139 ~--~~~~v~~~~~~~~~~~l~s~-----------------~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~ 199 (337)
T d1gxra_ 139 S--SAPACYALAISPDSKVCFSC-----------------CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp C--SSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred c--cccccccccccccccccccc-----------------cccccccccccccccccccccccccccccccccccccccc
Confidence 1 11345677888888777642 234568888877666544332 234456788999998777
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++. ..+.+..|++...+ ....+ ...+.+..+++++++++.++...
T Consensus 200 ~~~-~d~~v~i~d~~~~~--~~~~~--~~~~~i~~l~~~~~~~~l~~~~~ 244 (337)
T d1gxra_ 200 TGG-LDNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp EEE-TTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred ccc-ccccccccccccce--eeccc--ccccceEEEEEcccccccceecc
Confidence 665 45788888875321 11222 12234567888888876665433
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.25 E-value=0.00016 Score=61.81 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=85.2
Q ss_pred CCCCCcEEEEec-CCeEEEEE--CCceEEEEeeCCc---------cccCeEECCC----CcEEEEeCC-----------C
Q 023085 1 MDKNGVIYTATR-DGWIKRLQ--DGTWVNWKFIDSQ---------TLVGLTSTKE----GHLIICDNA-----------N 53 (287)
Q Consensus 1 ~d~~G~l~~~~~-~g~i~~~~--~~~~~~~~~~~~~---------~~~~i~~d~d----g~l~v~~~~-----------~ 53 (287)
+.++|+|+++.. .|+|.+++ ++....+...... -. +|+++|+ +.+|++-.. .
T Consensus 34 ~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~ 112 (450)
T d1crua_ 34 WGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIYISGTFKNPKSTDKELPN 112 (450)
T ss_dssp ECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEEEEEEEECTTC--CCSCE
T ss_pred EeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEEEEEecCCCCCccccccc
Confidence 357899999986 69999998 5555544433211 13 6888864 678886210 0
Q ss_pred --ceEEEc-cC-C--cEE---EeeecCCccccccceEEEcCCCcEEEEcCCCCC-CCc-cee----------e--e-eec
Q 023085 54 --GLHKVS-ED-G--VEN---FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKY-LPH-EYC----------L--D-ILE 109 (287)
Q Consensus 54 --gi~~~~-~~-g--~~~---~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~-~~~-~~~----------~--~-~~~ 109 (287)
-+.++. .. . ... +.........+.-..|+++++|.|||+-...-. ... ... . . ...
T Consensus 113 ~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 192 (450)
T d1crua_ 113 QTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDY 192 (450)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCC
T ss_pred ceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccccccccCccccccccccc
Confidence 133333 22 1 111 111111122245567999999999997433100 000 000 0 0 001
Q ss_pred cCCCceEEEEeCCCCe-----------eEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 110 GKPHGQLLKYDPSSNI-----------TTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
....+.|+|++++... -+.++..+..|.+++++|+++ ||+++-+
T Consensus 193 ~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G 247 (450)
T d1crua_ 193 HTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG 247 (450)
T ss_dssp TTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred ccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccc
Confidence 1234789999876321 134566778899999999877 8998854
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.18 E-value=8.8e-05 Score=60.28 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=86.5
Q ss_pred ECC-CCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceE
Q 023085 40 STK-EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 116 (287)
Q Consensus 40 ~d~-dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v 116 (287)
+.| ||++++....+.|+.++ ..+ ..++. ....+.++++.++|...++... .....|
T Consensus 10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~------~~~~v~~~~~spDg~~l~~~~~---------------~~g~~v 68 (360)
T d1k32a3 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP------EPLRIRYVRRGGDTKVAFIHGT---------------REGDFL 68 (360)
T ss_dssp EEECGGGCEEEEETTEEEEECTTSSBEEECS------CCSCEEEEEECSSSEEEEEEEE---------------TTEEEE
T ss_pred ccCCCCCEEEEEECCeEEEEECCCCcEEEcc------CCCCEEEEEECCCCCEEEEEEc---------------CCCCEE
Confidence 566 88877666556789998 556 54431 1235788999999965442100 112358
Q ss_pred EEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEE
Q 023085 117 LKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196 (287)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~ 196 (287)
+.+|.++++...+.........++++|+++.|..+. ....++.++.++.. ..............+++.++|++.+.
T Consensus 69 ~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~la~ 144 (360)
T d1k32a3 69 GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGK---PTVIERSREAMITDFTISDNSRFIAY 144 (360)
T ss_dssp EEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred EEEECCCCcEEEeeCCCceEEeeeecccccccceec-cccccccccccccc---eeeeeecccccccchhhccceeeeee
Confidence 888988888777766666677899999999777665 46778888876432 11122122234567888899875544
Q ss_pred E
Q 023085 197 I 197 (287)
Q Consensus 197 ~ 197 (287)
+
T Consensus 145 ~ 145 (360)
T d1k32a3 145 G 145 (360)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.17 E-value=0.00059 Score=55.26 Aligned_cols=144 Identities=10% Similarity=-0.061 Sum_probs=84.3
Q ss_pred CCC-cEEEEec-----CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC----------CceEEEc-cCC
Q 023085 3 KNG-VIYTATR-----DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA----------NGLHKVS-EDG 62 (287)
Q Consensus 3 ~~G-~l~~~~~-----~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~----------~gi~~~~-~~g 62 (287)
+|| ++|+.+. ...|+.++ +++....... +... +++++|||+ ||+++.. ..|..+| .++
T Consensus 11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~ 88 (355)
T d2bbkh_ 11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL 88 (355)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC
Confidence 567 6788752 34688899 5554443333 2333 689999996 7877531 2377888 666
Q ss_pred -cEEEeeecCC---ccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-c----
Q 023085 63 -VENFLSYVNG---SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G---- 132 (287)
Q Consensus 63 -~~~~~~~~~~---~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~---- 132 (287)
.......... .....|..+++.++|. +++++.. ....+..++..+++...... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (355)
T d2bbkh_ 89 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCYH 152 (355)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEeeEEecCCcce
Confidence 3332221111 1124577899999885 5664322 23456666666665432211 1
Q ss_pred ---ccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 133 ---FYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 133 ---~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
......++++++++.+++.......+...+..
T Consensus 153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~ 187 (355)
T d2bbkh_ 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence 11234467889999888887766666666654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.16 E-value=4.8e-05 Score=65.28 Aligned_cols=174 Identities=15% Similarity=0.180 Sum_probs=97.6
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc---cc------ccceEEEccC-
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FY------FANGVALSRD- 144 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~------~~~~i~~~~~- 144 (287)
+..|.+|++.++|+|||+. ...|.|+++++++++.+.+... .. .--+|+++|+
T Consensus 26 L~~P~~la~~pdg~llVte-----------------r~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf 88 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTE-----------------RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF 88 (450)
T ss_dssp CSSEEEEEECTTSCEEEEE-----------------TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred CCCceEEEEeCCCeEEEEE-----------------ecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence 4688999999999999973 2257899999877766554321 11 1135888874
Q ss_pred --CCEEEEEeCC------------CCEEEEEEecCCC--CcceeEEeccCC--C--CCcceeeCCCCCEEEEEeccchhH
Q 023085 145 --EDYVVVCESW------------KFRCRKYWLKGER--KGKLETFAENLP--G--APDNINLAPDGTFWIAIIKLDARR 204 (287)
Q Consensus 145 --~~~l~v~~~~------------~~~l~~~~~~~~~--~~~~~~~~~~~~--~--~~~~i~~d~~G~lwv~~~~~~~~~ 204 (287)
...+|++.+. ...+.++..+... ......+....+ + ....|++++||+||++.....+..
T Consensus 89 ~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~ 168 (450)
T d1crua_ 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQ 168 (450)
T ss_dssp TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTS
T ss_pred ccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCccc
Confidence 5678886531 1135555554322 112222222211 1 234599999999999987633211
Q ss_pred HHHhh-cc-----hhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-----------EEEECCCCccccceEEEEEe
Q 023085 205 MKILN-SS-----KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-----------RNLVDPTGQLMSFVTSGLQV 267 (287)
Q Consensus 205 ~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~ 267 (287)
..... .. +.......+.+ ....++|.|++++++.. +.|.. | ..++..++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~q~~--------~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~--G--~RNp~g~~~~ 236 (450)
T d1crua_ 169 LAYLFLPNQAQHTPTQQELNGKDY--------HTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGLAFT 236 (450)
T ss_dssp GGGTTSCCCTTCCCCHHHHHTTCC--------TTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEEEEC
T ss_pred ccccccccccccCccccccccccc--------ccccCceEEeeccccccccccccccccceEEEe--c--cccccceeec
Confidence 11100 00 00000011101 12247999999887642 22332 3 3456778777
Q ss_pred -CCEEEEEecC
Q 023085 268 -DNHLYVISLT 277 (287)
Q Consensus 268 -~g~l~i~~~~ 277 (287)
+|+||++...
T Consensus 237 p~g~l~~~e~G 247 (450)
T d1crua_ 237 PNGKLLQSEQG 247 (450)
T ss_dssp TTSCEEEEEEC
T ss_pred ccceeeecccc
Confidence 6999998865
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.11 E-value=9.5e-05 Score=60.09 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=81.8
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcE-EEEeCCC--ceEEEc-cCC-cEEEeeecCCcccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNAN--GLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~--gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
||.+......|.|+.++ .+...+.. ...... .+++.|||+. +++.... -|++++ .++ ...+.. ...
T Consensus 14 dG~~~a~~~~g~v~v~d~~~~~~~~~~-~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~-----~~~ 86 (360)
T d1k32a3 14 DGDLIAFVSRGQAFIQDVSGTYVLKVP-EPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE-----NLG 86 (360)
T ss_dssp GGGCEEEEETTEEEEECTTSSBEEECS-CCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC-----CCC
T ss_pred CCCEEEEEECCeEEEEECCCCcEEEcc-CCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC-----CCc
Confidence 78777666778999999 45555543 233344 8899999964 4443333 367777 566 554422 124
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEEccCCCEEEEEe
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~v~~ 152 (287)
.+..+++.++|+..++. ...+.++.++..+++...... .......++++|+|+.|.++.
T Consensus 87 ~v~~~~~spdg~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 87 NVFAMGVDRNGKFAVVA-----------------NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp SEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred eEEeeeeccccccccee-----------------ccccccccccccccceeeeeecccccccchhhccceeeeeeec
Confidence 56789999999866642 234678888887776554432 334456789999999877654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=0.0011 Score=54.52 Aligned_cols=145 Identities=10% Similarity=-0.013 Sum_probs=82.6
Q ss_pred ccccCeEECCCCcEEEEeCCC-ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 33 QTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~~-gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.|+..+++.+||++.+..... .|..++ .++ .+...... + ....+.++++.+++.+.++.
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-g-H~~~V~~l~fsp~~~~l~s~---------------- 69 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-E-HNGQVTGVDWAPDSNRIVTC---------------- 69 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-C-CSSCEEEEEEETTTTEEEEE----------------
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-C-CCCCEEEEEECCCCCEEEEE----------------
Confidence 455589999999876554343 477777 555 44433221 1 12357889999999877752
Q ss_pred cCCCceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCc-ceeEEeccCCCCCcce
Q 023085 110 GKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG-KLETFAENLPGAPDNI 185 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i 185 (287)
..++.|..++..++..... .........+.++|+++.++++.. .+.+..++.+..... ...............+
T Consensus 70 -s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (371)
T d1k8kc_ 70 -GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKKPIRSTVLSL 147 (371)
T ss_dssp -ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred -ECCCeEEEEeecccccccccccccccccccccccccccccceeecc-cCcceeeeeecccccccccccccccccccccc
Confidence 1234555555554544322 122334567889999997777654 455666666543211 1111111112234567
Q ss_pred eeCCCCCEEEEE
Q 023085 186 NLAPDGTFWIAI 197 (287)
Q Consensus 186 ~~d~~G~lwv~~ 197 (287)
+++++|++.++.
T Consensus 148 ~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 148 DWHPNSVLLAAG 159 (371)
T ss_dssp EECTTSSEEEEE
T ss_pred cccccccceecc
Confidence 788888766544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.00 E-value=0.00017 Score=59.40 Aligned_cols=183 Identities=12% Similarity=0.110 Sum_probs=102.4
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee--EEe--ecc-----ccccceEEE--ccCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLV--ADG-----FYFANGVAL--SRDE 145 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~~~-----~~~~~~i~~--~~~~ 145 (287)
.+.+|+++++|.++++....--+...+. ....|.++.+|.++... ..+ ... ...|+|+.+ +.++
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~-----~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg 110 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFD-----PDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDN 110 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC-------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTC
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCC-----CCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCC
Confidence 5788999999988886422101111111 12347899998754322 111 111 135888875 4456
Q ss_pred C-EEEEEeC--CCCEEEEEEecCC--CCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHh
Q 023085 146 D-YVVVCES--WKFRCRKYWLKGE--RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 220 (287)
Q Consensus 146 ~-~l~v~~~--~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (287)
+ .|++.+- .+.+|-.|+++.. +......+.......|+.++...+|.+|++...... .+..+.+ +.
T Consensus 111 ~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~--------~~~~~~~-e~ 181 (340)
T d1v04a_ 111 TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFI--------DPYLKSW-EM 181 (340)
T ss_dssp CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCC--------SHHHHHH-HH
T ss_pred cEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCc--------Chhhhhh-hH
Confidence 5 4777663 3466777776532 222222333233356899999999999999743111 1111111 10
Q ss_pred CCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 023085 221 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~~ 287 (287)
+ ...+.+.++.++++. ..... ++ ...+.++..+ +..|||+...+.+|.+|+++
T Consensus 182 ~--------~~~~~g~v~~~~~~~--~~~~~--~~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~ 236 (340)
T d1v04a_ 182 H--------LGLAWSFVTYYSPND--VRVVA--EG--FDFANGINISPDGKYVYIAELLAHKIHVYEKH 236 (340)
T ss_dssp H--------TTCCCEEEEEECSSC--EEEEE--EE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred h--------hcCCceeEEEEcCCc--eEEEc--CC--CCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence 0 023356788887643 23322 12 3456667764 57899999999999999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.99 E-value=0.00048 Score=55.04 Aligned_cols=127 Identities=20% Similarity=0.068 Sum_probs=77.6
Q ss_pred EEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC
Q 023085 47 IICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 122 (287)
Q Consensus 47 ~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 122 (287)
+.+...+.|.++| .++ +..+... .....|.++++++||+ +|++. ...+.|..+|..
T Consensus 5 vt~~~d~~v~v~D~~s~~~~~~i~~~---~~~~~~~~i~~spDg~~l~v~~-----------------~~~~~v~v~D~~ 64 (337)
T d1pbyb_ 5 LAPARPDKLVVIDTEKMAVDKVITIA---DAGPTPMVPMVAPGGRIAYATV-----------------NKSESLVKIDLV 64 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECT---TCTTCCCCEEECTTSSEEEEEE-----------------TTTTEEEEEETT
T ss_pred EEEcCCCEEEEEECCCCeEEEEEECC---CCCCCccEEEECCCCCEEEEEE-----------------CCCCeEEEEECC
Confidence 3444446788888 666 3333221 1124678899999996 56753 235679999998
Q ss_pred CCeeEEeecc------ccccceEEEccCCCEEEEEeCC-----------CCEEEEEEecCCCCcceeEEeccCCCCCcce
Q 023085 123 SNITTLVADG------FYFANGVALSRDEDYVVVCESW-----------KFRCRKYWLKGERKGKLETFAENLPGAPDNI 185 (287)
Q Consensus 123 ~~~~~~~~~~------~~~~~~i~~~~~~~~l~v~~~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (287)
+++....... ...+.+++++|+++.+|++... ...+..++.... +..... .....+.++
T Consensus 65 t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~ 140 (337)
T d1pbyb_ 65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAF-EAPRQITML 140 (337)
T ss_dssp TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEE-ECCSSCCCE
T ss_pred CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC---eEEEec-cccCCceEE
Confidence 8876443211 2456789999999999988642 234555554322 111111 123458899
Q ss_pred eeCCCCCEEEEE
Q 023085 186 NLAPDGTFWIAI 197 (287)
Q Consensus 186 ~~d~~G~lwv~~ 197 (287)
+++++|+..++.
T Consensus 141 ~~s~dg~~l~~~ 152 (337)
T d1pbyb_ 141 AWARDGSKLYGL 152 (337)
T ss_dssp EECTTSSCEEEE
T ss_pred EEcCCCCEEEEE
Confidence 999999644443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.98 E-value=0.00043 Score=58.67 Aligned_cols=188 Identities=13% Similarity=0.035 Sum_probs=107.8
Q ss_pred CCC-cEEEEe-cCCeEEEEE--CCceEEEEee--CCccccCeEECCCCc-EEEEeCC-Cce------------------E
Q 023085 3 KNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGH-LIICDNA-NGL------------------H 56 (287)
Q Consensus 3 ~~G-~l~~~~-~~g~i~~~~--~~~~~~~~~~--~~~~~~~i~~d~dg~-l~v~~~~-~gi------------------~ 56 (287)
.|| .||+.+ .+++|.+++ +.+....... ...|. ++++.++|+ +||+... ..+ .
T Consensus 81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~ 159 (441)
T d1qnia2 81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT 159 (441)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence 467 588887 678999999 5666555443 34566 999999995 6776422 222 2
Q ss_pred EEc-cCC--cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCc---------cee--------------eeeec
Q 023085 57 KVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPH---------EYC--------------LDILE 109 (287)
Q Consensus 57 ~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~---------~~~--------------~~~~~ 109 (287)
.+| .+. ..++ .. ...|..++++++|. +|++....+-... .+. ....
T Consensus 160 ~iD~~t~~v~~qI-~v-----~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~- 232 (441)
T d1qnia2 160 AIDAETMDVAWQV-IV-----DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK- 232 (441)
T ss_dssp EEETTTCSEEEEE-EE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB-
T ss_pred eecCccceeeEEE-ec-----CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE-
Confidence 233 222 1111 10 13578899999985 7777544321110 000 0000
Q ss_pred cCCCceEEEEeC-CCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC------CCcceeEE-ecc-CCC
Q 023085 110 GKPHGQLLKYDP-SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE------RKGKLETF-AEN-LPG 180 (287)
Q Consensus 110 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~------~~~~~~~~-~~~-~~~ 180 (287)
.....++..++. ...++....+....|+|+.++|||+++|++....+.+..+|++.- .+.....+ ... ..-
T Consensus 233 ~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl 312 (441)
T d1qnia2 233 TIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312 (441)
T ss_dssp CCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred EeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence 011123444443 222233333445679999999999999999998999999997531 11111111 111 111
Q ss_pred CCcceeeCCCCCEEEEEe
Q 023085 181 APDNINLAPDGTFWIAII 198 (287)
Q Consensus 181 ~~~~i~~d~~G~lwv~~~ 198 (287)
.|...++|.+|+.|.+..
T Consensus 313 gplh~~fd~~g~~yts~~ 330 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLF 330 (441)
T ss_dssp CEEEEEECSSSEEEEEET
T ss_pred CcccceecCCceEEEccc
Confidence 366678999999998864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=0.0025 Score=51.25 Aligned_cols=159 Identities=11% Similarity=0.004 Sum_probs=82.2
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+.++++.++|...++... .....+..++.++++. ..+.........+++++++..+.++....
T Consensus 117 ~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d 181 (325)
T d1pgua1 117 PISDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181 (325)
T ss_dssp CEEEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cEEEEEECCCCCccceeec---------------cccceEEEEeecccccceeeeecccccccccccccccceEEEeecc
Confidence 4678888888876553211 1122344444444443 33322334456788999887666666666
Q ss_pred CEEEEEEecCCCCcceeEEec--cCCCCCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 156 FRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
+.+..|+....+ ....... ........+++.++ +.+.++...
T Consensus 182 ~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~--------------------------------- 226 (325)
T d1pgua1 182 GSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--------------------------------- 226 (325)
T ss_dssp TEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---------------------------------
T ss_pred cccccccccccc--cceecccccCCCCccEEeeeccccceecccccc---------------------------------
Confidence 778888754321 1111111 11223466788886 455554443
Q ss_pred CceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 233 GGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 233 ~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..++.+ ++.+..+............+....+++++++.-....|.++|+
T Consensus 227 -d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~ 280 (325)
T d1pgua1 227 -DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280 (325)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred -ccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence 2456666643 6666666543322222233333334444444434455666654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.96 E-value=0.0012 Score=54.17 Aligned_cols=212 Identities=10% Similarity=-0.064 Sum_probs=112.6
Q ss_pred CCCC-cEEEEec----------CCeEEEEE--CCceEEEEee--------CCccccCeEECCCCc-EEEEeCC-CceEEE
Q 023085 2 DKNG-VIYTATR----------DGWIKRLQ--DGTWVNWKFI--------DSQTLVGLTSTKEGH-LIICDNA-NGLHKV 58 (287)
Q Consensus 2 d~~G-~l~~~~~----------~g~i~~~~--~~~~~~~~~~--------~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~ 58 (287)
.+|| .||+++. ++.|..|+ +++....... ...|. .+++.+||+ ||+++.. +.+..+
T Consensus 73 spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~-~~a~SpDGk~l~va~~~~~~v~~~ 151 (368)
T d1mdah_ 73 GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASSACLLFFLFGSSAAAGL 151 (368)
T ss_dssp CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTSSCEEEEECSSSCEEEE
T ss_pred CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCcc-ceEECCCCCEEEEEeCCCCeEEEE
Confidence 3566 5887752 34578888 4444333221 23456 899999995 8888644 568888
Q ss_pred c-cCC-cEEEeeecCC---ccccccceEEEcCCCcEEEEcCCC--CC---------CCc-ce--e-----eeeeccCCCc
Q 023085 59 S-EDG-VENFLSYVNG---SKLRFANDVVEASDGSLYFTVSSS--KY---------LPH-EY--C-----LDILEGKPHG 114 (287)
Q Consensus 59 ~-~~g-~~~~~~~~~~---~~~~~~~~l~~d~~g~l~v~~~~~--~~---------~~~-~~--~-----~~~~~~~~~~ 114 (287)
| .++ .......... .+......++...+|.+++.+... +. ... .. . .........+
T Consensus 152 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (368)
T d1mdah_ 152 SVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS 231 (368)
T ss_dssp EETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS
T ss_pred ECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCC
Confidence 8 666 3333222111 111222335556677755543221 10 000 00 0 0001111223
Q ss_pred eEEEEeCCCCeeEEeecc-------------ccccceEEEccCCCEEEEEeCCC--------CEEEEEEecCCCCcceeE
Q 023085 115 QLLKYDPSSNITTLVADG-------------FYFANGVALSRDEDYVVVCESWK--------FRCRKYWLKGERKGKLET 173 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~l~v~~~~~--------~~l~~~~~~~~~~~~~~~ 173 (287)
.++.++...+........ ...+..++++++++.+|+....+ ..|+.+|....+. ...
T Consensus 232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~ 309 (368)
T d1mdah_ 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGP 309 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EEC
T ss_pred CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE--eEE
Confidence 455565554444332110 01234678899999999875432 3588888654321 111
Q ss_pred EeccCCCCCcceeeCCCCC--EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEE
Q 023085 174 FAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNL 250 (287)
Q Consensus 174 ~~~~~~~~~~~i~~d~~G~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~ 250 (287)
+ .....+..+++.+||+ ||++... .+.|..+|.. |+.+..+
T Consensus 310 ~--~~~~~~~~~a~spDG~~~ly~s~~~----------------------------------~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 310 I--SNGHDSDAIIAAQDGASDNYANSAG----------------------------------TEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp C--EEEEEECEEEECCSSSCEEEEEETT----------------------------------TTEEEEEESSSCEEEEEC
T ss_pred e--cCCCceeEEEECCCCCEEEEEEeCC----------------------------------CCeEEEEECCCCCEEEEE
Confidence 1 1123478899999996 5666654 3578889965 7777777
Q ss_pred EC
Q 023085 251 VD 252 (287)
Q Consensus 251 ~~ 252 (287)
..
T Consensus 354 ~~ 355 (368)
T d1mdah_ 354 EL 355 (368)
T ss_dssp CC
T ss_pred EC
Confidence 64
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.93 E-value=3.5e-06 Score=71.89 Aligned_cols=198 Identities=8% Similarity=-0.051 Sum_probs=106.4
Q ss_pred CCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCc-ceeeeee-ccCCC
Q 023085 41 TKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPH-EYCLDIL-EGKPH 113 (287)
Q Consensus 41 d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~-~~~~~~~-~~~~~ 113 (287)
.+||+ ||+++.. ..|.++| .+. ......... ...|+++++.++|+ +|++.... +... ......+ .....
T Consensus 80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~ 155 (441)
T d1qnia2 80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSY 155 (441)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEE
T ss_pred cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccC-CcccccCccccccccccc
Confidence 36894 8888755 5689998 666 444322211 24688999998874 67753321 1000 0000000 01111
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCE
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 193 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 193 (287)
..+..+|+.+.++..-......|..+.++|+|+++|+++.....+..++.........-... ..|..+++.++|+.
T Consensus 156 ~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~----n~p~~~~~~~dGk~ 231 (441)
T d1qnia2 156 TMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF----NVERIAAAVKAGNF 231 (441)
T ss_dssp EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE----EHHHHHHHHHTTCC
T ss_pred ceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC----CccceEEEecCCCE
Confidence 24556788766654333334568899999999999999876654444332221111111111 13445555556642
Q ss_pred EEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC--CCcEEEEEECCCCccccceEEEEE--eCC
Q 023085 194 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGTIIRNLVDPTGQLMSFVTSGLQ--VDN 269 (287)
Q Consensus 194 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~--~~g 269 (287)
.... . .++..++. ..+.+..+. .+. .+.++.. ++.
T Consensus 232 ~~v~-~-----------------------------------~~v~vvd~~~~~~v~~~IP--vgk---sPhGv~vSPDGk 270 (441)
T d1qnia2 232 KTIG-D-----------------------------------SKVPVVDGRGESEFTRYIP--VPK---NPHGLNTSPDGK 270 (441)
T ss_dssp BCCT-T-----------------------------------CCCCEEECSSSCSSEEEEC--CBS---SCCCEEECTTSC
T ss_pred EEeC-C-----------------------------------CCcEEEEcccCCceEEEEe--CCC---CccCceECCCCC
Confidence 1111 1 12333332 233444443 333 2444544 467
Q ss_pred EEEEEecCCCeEEEEeCC
Q 023085 270 HLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 270 ~l~i~~~~~~~i~~~~~~ 287 (287)
++|+++..++.|.++|++
T Consensus 271 yl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 271 YFIANGKLSPTVSVIAID 288 (441)
T ss_dssp EEEEECTTSSBEEEEEGG
T ss_pred EEEEeCCcCCcEEEEEee
Confidence 799999999999999863
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=0.0035 Score=50.37 Aligned_cols=223 Identities=11% Similarity=0.004 Sum_probs=116.7
Q ss_pred CCc-EEEEecCCeEEEEE--CCc----eEEE----EeeCCccccCeEECCCCcEEEE-eCC--CceEEEc-cCC--cEEE
Q 023085 4 NGV-IYTATRDGWIKRLQ--DGT----WVNW----KFIDSQTLVGLTSTKEGHLIIC-DNA--NGLHKVS-EDG--VENF 66 (287)
Q Consensus 4 ~G~-l~~~~~~g~i~~~~--~~~----~~~~----~~~~~~~~~~i~~d~dg~l~v~-~~~--~gi~~~~-~~g--~~~~ 66 (287)
+|. |..|+.+|.|..|+ .++ .... ......++..+++.++|+..++ ... ..+..++ .++ ...+
T Consensus 76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (325)
T d1pgua1 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV 155 (325)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee
Confidence 454 33456888888887 211 1111 1112233337888999975444 322 2345555 444 3332
Q ss_pred eeecCCccccccceEEEcCCCcE-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc----ccccceEEE
Q 023085 67 LSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYFANGVAL 141 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~i~~ 141 (287)
. + ....++++++.+++.. .++ ...++.+..++....+....... ......++|
T Consensus 156 ~----~-h~~~v~~~~~~~~~~~~~~~-----------------~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~ 213 (325)
T d1pgua1 156 S----G-HSQRINACHLKQSRPMRSMT-----------------VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 213 (325)
T ss_dssp C----S-CSSCEEEEEECSSSSCEEEE-----------------EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred e----e-cccccccccccccccceEEE-----------------eecccccccccccccccceecccccCCCCccEEeee
Confidence 1 1 1235677888887753 443 12346777787765554332211 223467889
Q ss_pred ccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC---CCCCEEEEEeccchhHHHHhhcchhHHHHH
Q 023085 142 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA---PDGTFWIAIIKLDARRMKILNSSKLIKHVL 218 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d---~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~ 218 (287)
+|+...++++....+.|..||....+ ....+. .-.....++.+. ++|++.++...
T Consensus 214 ~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~------------------- 271 (325)
T d1pgua1 214 SPDSGEFVITVGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFALSWLDSQKFATVGA------------------- 271 (325)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEEEEESSSSEEEEEET-------------------
T ss_pred ccccceeccccccccceeeeeecccc--cccccc-ccccccccceeeeeccCCCEEEEEeC-------------------
Confidence 99865566665566789999865332 112221 111122333333 57776666544
Q ss_pred HhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 219 AAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..+|.+ ++.+..+............++... ++.|. +.-..+.|.++||
T Consensus 272 ---------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~dg~i~vwdl 325 (325)
T d1pgua1 272 ---------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFYEL 325 (325)
T ss_dssp ---------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE-EEETTSCEEEEET
T ss_pred ---------------CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE-EEECCCEEEEEEC
Confidence 2466667754 677777765332222223344444 45664 4444578888875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.89 E-value=0.0036 Score=50.33 Aligned_cols=212 Identities=14% Similarity=0.056 Sum_probs=111.5
Q ss_pred CCCC-cEEEEec----------CCeEEEEE--CCceEEEEee--------CCccccCeEECCCCc-EEEEeCC--CceEE
Q 023085 2 DKNG-VIYTATR----------DGWIKRLQ--DGTWVNWKFI--------DSQTLVGLTSTKEGH-LIICDNA--NGLHK 57 (287)
Q Consensus 2 d~~G-~l~~~~~----------~g~i~~~~--~~~~~~~~~~--------~~~~~~~i~~d~dg~-l~v~~~~--~gi~~ 57 (287)
.+|| .||+++. ++.|..|| +++....... ...|. .+++.++|+ ++++... ..+..
T Consensus 55 SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~~~~~ 133 (355)
T d2bbkh_ 55 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQFSPAPAVGV 133 (355)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEECSSSCEEEE
T ss_pred cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCc-eEEEecCCCeeEEecCCCCceeee
Confidence 4677 4887652 46788888 5554433221 23456 789999995 6777543 23555
Q ss_pred Ec-cCC--cEEEeeec--CCccccccceEEEcCCCc-EEEEcCCCC-----------CCC------ccee---eeeeccC
Q 023085 58 VS-EDG--VENFLSYV--NGSKLRFANDVVEASDGS-LYFTVSSSK-----------YLP------HEYC---LDILEGK 111 (287)
Q Consensus 58 ~~-~~g--~~~~~~~~--~~~~~~~~~~l~~d~~g~-l~v~~~~~~-----------~~~------~~~~---~~~~~~~ 111 (287)
++ .++ ...+.... ...+......+++.++|. +++...... ... ..+. ..+....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (355)
T d2bbkh_ 134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT 213 (355)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB
T ss_pred eecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEec
Confidence 56 555 33332110 001112334456666664 333322110 000 0000 0112223
Q ss_pred CCceEEEEeCCCCeeEEeecc-------------ccccceEEEccCCCEEEEEeCCC---------CEEEEEEecCCCCc
Q 023085 112 PHGQLLKYDPSSNITTLVADG-------------FYFANGVALSRDEDYVVVCESWK---------FRCRKYWLKGERKG 169 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~l~v~~~~~---------~~l~~~~~~~~~~~ 169 (287)
..+.++.++..++.+..+... ......+++++++..+|+..... ..|..+|....+.
T Consensus 214 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~- 292 (355)
T d2bbkh_ 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER- 292 (355)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-
T ss_pred CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-
Confidence 345677777665554332210 01224578899999999876432 3677888654321
Q ss_pred ceeEEeccCCCCCcceeeCCCCC--EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE
Q 023085 170 KLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI 246 (287)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~d~~G~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~ 246 (287)
...+. ....|.++++.+||+ ++++... .+.|..+|. .|+.
T Consensus 293 -~~~~~--~~~~~~~~a~spDG~~~l~v~~~~----------------------------------d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 293 -LAKFE--MGHEIDSINVSQDEKPLLYALSTG----------------------------------DKTLYIHDAESGEE 335 (355)
T ss_dssp -EEEEE--EEEEECEEEECCSSSCEEEEEETT----------------------------------TTEEEEEETTTCCE
T ss_pred -EEEec--CCCCEEEEEEcCCCCeEEEEEECC----------------------------------CCEEEEEECCCCCE
Confidence 11111 123478899999996 4554433 357888986 5888
Q ss_pred EEEEEC
Q 023085 247 IRNLVD 252 (287)
Q Consensus 247 ~~~~~~ 252 (287)
+..+..
T Consensus 336 ~~~i~~ 341 (355)
T d2bbkh_ 336 LRSVNQ 341 (355)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 887763
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=0.0044 Score=50.46 Aligned_cols=174 Identities=11% Similarity=0.076 Sum_probs=90.4
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCceEEEEee------------------CCccccCeEECCCCcEEEEeCCCc-eEEEc
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI------------------DSQTLVGLTSTKEGHLIICDNANG-LHKVS 59 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~------------------~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~ 59 (287)
|+++|.+.+...++.|..|+ +++....... ....+..+++.++|++.++....| |..++
T Consensus 70 fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~ 149 (388)
T d1erja_ 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149 (388)
T ss_dssp ECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccc
Confidence 35778654433577888888 4443222110 011122678899997665533434 55566
Q ss_pred -cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccc
Q 023085 60 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN 137 (287)
Q Consensus 60 -~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 137 (287)
..+ ....... ....+..+....++...++ +...+.+..++..+..............
T Consensus 150 ~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~-----------------~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 208 (388)
T d1erja_ 150 IENRKIVMILQG----HEQDIYSLDYFPSGDKLVS-----------------GSGDRTVRIWDLRTGQCSLTLSIEDGVT 208 (388)
T ss_dssp TTTTEEEEEECC----CSSCEEEEEECTTSSEEEE-----------------EETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred cccccccccccc----ccccccccccccccccccc-----------------cccceeeeeeeccccccccccccccccc
Confidence 455 2222111 1235667778877765553 2234667778877665444333333334
Q ss_pred eEEEcc-CCCEEEEEeCCCCEEEEEEecCCCCcceeEEec---c---CCCCCcceeeCCCCCEEEEEe
Q 023085 138 GVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAE---N---LPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 138 ~i~~~~-~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~---~---~~~~~~~i~~d~~G~lwv~~~ 198 (287)
.+++.+ +++.++.+. ..+.|..++...... ...+.. . -.+....+++.++|++.++..
T Consensus 209 ~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 209 TVAVSPGDGKYIAAGS-LDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp EEEECSTTCCEEEEEE-TTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccCCCCCeEEEEc-CCCeEEEeecccCcc--ceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 445544 566554444 456788888653221 111110 0 112345677888887655543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.84 E-value=0.0021 Score=53.89 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=67.3
Q ss_pred ccccCeEECCC--CcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeee
Q 023085 33 QTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 106 (287)
Q Consensus 33 ~~~~~i~~d~d--g~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~ 106 (287)
.|. .+.++.| +.++|+... +.|..+| .++ +..+.. + ..|.++++++||+..++
T Consensus 20 ~p~-~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~---g---~~~~~vafSPDGk~l~~-------------- 78 (426)
T d1hzua2 20 RPK-KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT---G---YAVHISRMSASGRYLLV-------------- 78 (426)
T ss_dssp SCS-SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEEC---C---SSEEEEEECTTSCEEEE--------------
T ss_pred CCC-cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeC---C---CCeeEEEECCCCCEEEE--------------
Confidence 344 4444444 345566544 4577888 666 444421 1 35789999999975442
Q ss_pred eeccCCCceEEEEeCCCCeeEEee--ccccccceEE----EccCCCEEEEEeCCCCEEEEEEecC
Q 023085 107 ILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVA----LSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~----~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
....+.|..+|.++++..... .....+.+++ ++|||+.++++....+.+..+|...
T Consensus 79 ---~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~ 140 (426)
T d1hzua2 79 ---IGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140 (426)
T ss_dssp ---EETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred ---EeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence 123467888888776543221 2223444444 4579999999987778888888654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.81 E-value=0.0053 Score=49.80 Aligned_cols=144 Identities=6% Similarity=-0.096 Sum_probs=82.5
Q ss_pred CCCC-cEEEEe-----cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC----------CceEEEc-cC
Q 023085 2 DKNG-VIYTAT-----RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA----------NGLHKVS-ED 61 (287)
Q Consensus 2 d~~G-~l~~~~-----~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~----------~gi~~~~-~~ 61 (287)
.+|| ++|+.. ..+.|+.++ +++..... ..+... ++++.|||+ |+++... +.|..+| .+
T Consensus 29 spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t 106 (373)
T d2madh_ 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCC
Confidence 3567 678764 235688888 56554432 333444 789999995 6666432 1256666 55
Q ss_pred C-cEEEeeecCC---ccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc
Q 023085 62 G-VENFLSYVNG---SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 136 (287)
Q Consensus 62 g-~~~~~~~~~~---~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 136 (287)
+ .......... .....+..+++.+++. +++... ...+.+..++..+.++. .....+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~----------------~~~~~~~~~~~~~~~~~---~~~~~~ 167 (373)
T d2madh_ 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF----------------AAGPAVGLVVQGGSSDD---QLLSSP 167 (373)
T ss_pred CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE----------------cCCCceEEeeccCCeEE---EEeccc
Confidence 5 2222111111 1123456677777664 444321 12234444554444332 223356
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
..+.++++++.+|++....+.+..++....
T Consensus 168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~ 197 (373)
T d2madh_ 168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGG 197 (373)
T ss_pred eeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence 788899999999999888888999887643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.80 E-value=0.0056 Score=49.78 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=115.0
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcE-EEEeCCCceEEEc-cCC-cEEEeeecCCcccc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
++| .|..++.+|.|..++ .++..........+...+...+++.. ..+.....+..++ .+. ....... . .
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~----~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-E----D 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-S----S
T ss_pred CCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc-c----c
Confidence 456 455667888888888 44433333222222226777888864 4444444466666 444 2222111 1 1
Q ss_pred ccceEEEc-CCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--------cccccceEEEccCCCE
Q 023085 77 FANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------GFYFANGVALSRDEDY 147 (287)
Q Consensus 77 ~~~~l~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~ 147 (287)
....+... .++.+.++. ...+.+..++..++....... .......++++|+++.
T Consensus 206 ~~~~~~~~~~~~~~l~~~-----------------~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 268 (388)
T d1erja_ 206 GVTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268 (388)
T ss_dssp CEEEEEECSTTCCEEEEE-----------------ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred ccccccccCCCCCeEEEE-----------------cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE
Confidence 22233333 456665541 234567777766554332211 1123457889999986
Q ss_pred EEEEeCCCCEEEEEEecCCCCc---------ceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHH
Q 023085 148 VVVCESWKFRCRKYWLKGERKG---------KLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 218 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~ 218 (287)
|+.+. ..+.|..|++...... ........-......+++.++|++.++...
T Consensus 269 l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------------------- 328 (388)
T d1erja_ 269 VVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------------------- 328 (388)
T ss_dssp EEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-------------------
T ss_pred EEEEE-CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-------------------
Confidence 66655 4578888887532110 000000011123456778888875555443
Q ss_pred HhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-------CCEEEEEecCCCeEEEEeC
Q 023085 219 AAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.|..+|. .++.+..+....+ .+..+... ++.+.+++-..+.|.+.++
T Consensus 329 ---------------dg~i~vwd~~~~~~~~~l~~H~~----~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 329 ---------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp ---------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred ---------------CCEEEEEECCCCcEEEEEeCCCC----CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence 256777774 4777777765333 24444331 4565555545556666554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=0.00079 Score=53.69 Aligned_cols=135 Identities=9% Similarity=0.003 Sum_probs=79.7
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccccce
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~ 80 (287)
+..+..++.|..|+ +++..........+...+++.++++++++... ..+..++ ... ...+. .......+..
T Consensus 199 ~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~---~~~~~~~i~~ 275 (340)
T d1tbga_ 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS---HDNIICGITS 275 (340)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---CTTCCSCEEE
T ss_pred eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc---cccccCceEE
Confidence 33455778888888 44433322222223327889999976655333 3466666 444 22221 1122245678
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCR 159 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~ 159 (287)
++++++|.+.++. ...+.|..+|..+++... +.........++++|+++.|+.+. ..+.|.
T Consensus 276 ~~~s~~~~~l~~g-----------------~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s-~Dg~v~ 337 (340)
T d1tbga_ 276 VSFSKSGRLLLAG-----------------YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS-WDSFLK 337 (340)
T ss_dssp EEECSSSCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSCEE
T ss_pred EEECCCCCEEEEE-----------------ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc-cCCEEE
Confidence 8999999877752 235678888877666443 333344567889999998666554 345566
Q ss_pred EEE
Q 023085 160 KYW 162 (287)
Q Consensus 160 ~~~ 162 (287)
.||
T Consensus 338 iWd 340 (340)
T d1tbga_ 338 IWN 340 (340)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.58 E-value=0.011 Score=46.70 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=35.1
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS 59 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~ 59 (287)
.++|. |..|+.+|.|..|+ +++..........++..+++.+++++.++ .....+...+
T Consensus 64 s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence 45664 55666889999999 55544333333333338889999976554 4333344444
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.56 E-value=0.0012 Score=54.13 Aligned_cols=116 Identities=10% Similarity=-0.065 Sum_probs=71.5
Q ss_pred CeEECCCCc-EEEEeC--CC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeee
Q 023085 37 GLTSTKEGH-LIICDN--AN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~--~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~ 107 (287)
..+..++++ .|++.. .. .++.+| .++ ....... .....+++.++|+ ||+++..... .
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~------~~~~~~a~spDg~~i~~~~~~~~~--------~ 89 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------AFLSLAVAGHSGSDFALASTSFAR--------S 89 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------CTTCEEEECTTSSCEEEEEEEETT--------T
T ss_pred ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC------CCCCcceECCCCCEEEEEcccCcc--------c
Confidence 455567774 566532 22 388888 555 3222221 1223578899984 7876422100 0
Q ss_pred eccCCCceEEEEeCCCCeeEEee--------ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVA--------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
..+...+.|..+|+.+++..... .....|.+++++|||+.||+++...+.+..+|+...
T Consensus 90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~ 156 (368)
T d1mdah_ 90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156 (368)
T ss_dssp TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred cccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 01123456999998877654321 123457889999999999999987888999998754
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.50 E-value=0.012 Score=45.49 Aligned_cols=142 Identities=10% Similarity=0.075 Sum_probs=79.7
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~ 75 (287)
.++|. |..++.+|.|..|+ +++..........++..++..+++.+.+.... ..+...+ ... ...... ...
T Consensus 26 sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 101 (317)
T d1vyhc1 26 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH----GHD 101 (317)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC----CCS
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc----ccc
Confidence 45675 44556889999998 55443332222223327888999976655433 3344444 222 211111 112
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+..+.+.+++...++. ...+.+..++..+++... +.........++++++++.+..+. .
T Consensus 102 ~~~~~~~~~~~~~~~~~~-----------------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 163 (317)
T d1vyhc1 102 HNVSSVSIMPNGDHIVSA-----------------SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS-N 163 (317)
T ss_dssp SCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred ccceeeeccCCCceEEee-----------------ccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe-C
Confidence 344567777777766641 234567777776655433 333334456778899988655554 4
Q ss_pred CCEEEEEEecC
Q 023085 155 KFRCRKYWLKG 165 (287)
Q Consensus 155 ~~~l~~~~~~~ 165 (287)
.+.+..++...
T Consensus 164 d~~v~~~~~~~ 174 (317)
T d1vyhc1 164 DQTVRVWVVAT 174 (317)
T ss_dssp TSCEEEEETTT
T ss_pred CCeEEEEeecc
Confidence 56788887653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.48 E-value=0.014 Score=47.60 Aligned_cols=179 Identities=11% Similarity=0.136 Sum_probs=90.0
Q ss_pred CCCcEEEEe-cCCeEEEEE-CCceEEEEeeCCccc-----cCeEECCCC-cEEEEeCC----Cc--eEEEc-cCC-cEEE
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTL-----VGLTSTKEG-HLIICDNA----NG--LHKVS-EDG-VENF 66 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~~~~~-----~~i~~d~dg-~l~v~~~~----~g--i~~~~-~~g-~~~~ 66 (287)
++..|.+|| ..++|+.|+ +|+....... +.++ .++.+..+. .+.+++.. .. ++.++ ..+ +..+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~ 116 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLEGKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETTCCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred cCccEEEEEcCcCCEEEEcCCCcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence 455678888 667899999 8877666432 2222 022222222 24444322 13 45555 334 4443
Q ss_pred eeecCC--ccccccceEEE--cC-CCcEEEEcCCCCCCCcceeeeeeccCCCceE--EEEeC-CCCeeEEe----ecccc
Q 023085 67 LSYVNG--SKLRFANDVVE--AS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYDP-SSNITTLV----ADGFY 134 (287)
Q Consensus 67 ~~~~~~--~~~~~~~~l~~--d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~~~~----~~~~~ 134 (287)
...... .....+++++. ++ +|.+++.. ....+.+ |.+.. ..+.+... .....
T Consensus 117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv----------------~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~ 180 (353)
T d1h6la_ 117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMV----------------TGKEGEFEQYELNADKNGYISGKKVRAFKMNS 180 (353)
T ss_dssp SCSSSCEECSSSSCCCEEEEECTTTCCEEEEE----------------ECSSSEEEEEEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccccccccCcceEEEEEecCCCCeEEEEE----------------EcCCceEEEEEEEcCCCCceeeEeeeccCCCC
Confidence 221110 11234677766 54 46665421 1122333 33432 22332221 12234
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec----cCCCCCcceee--CCCCC-EEEEEec
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE----NLPGAPDNINL--APDGT-FWIAIIK 199 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~--d~~G~-lwv~~~~ 199 (287)
.+.|++++.+.+.||+++. ..++|+|+.+............ ...+-|.||++ .++|. +|+++.+
T Consensus 181 q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ 251 (353)
T d1h6la_ 181 QTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ 251 (353)
T ss_dssp CEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred ccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC
Confidence 6789999999999999997 4689999976321111111111 13345778876 22332 5555554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.97 E-value=0.065 Score=43.45 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=76.5
Q ss_pred EEEEeCCCCeeEEeec-------cccccceEEE--ccCCCEEE-EEeCCCCEEEEEEecCC---CCc--ceeEEeccCCC
Q 023085 116 LLKYDPSSNITTLVAD-------GFYFANGVAL--SRDEDYVV-VCESWKFRCRKYWLKGE---RKG--KLETFAENLPG 180 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~-------~~~~~~~i~~--~~~~~~l~-v~~~~~~~l~~~~~~~~---~~~--~~~~~~~~~~~ 180 (287)
+|.+++..+.+..+.. ....+.|+|+ ++....+| +.....+.+..|.+... ... ..+.+ ..++
T Consensus 103 ~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~ 180 (353)
T d1h6la_ 103 IYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNS 180 (353)
T ss_dssp EEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSS
T ss_pred EEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCC
Confidence 6677766565554422 2335789997 55543233 33344567877766421 111 12222 2444
Q ss_pred CCcceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCC-cEEEEE-ECCCC
Q 023085 181 APDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDG-TIIRNL-VDPTG 255 (287)
Q Consensus 181 ~~~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g-~~~~~~-~~~~~ 255 (287)
-+.|+++|.+ ++||++... .++++++ ++. .....+ ....+
T Consensus 181 q~EGCVvDde~~~LyisEE~-----------------------------------~Giw~~~a~~~~~~~~~~i~~~~g~ 225 (353)
T d1h6la_ 181 QTEGMAADDEYGSLYIAEED-----------------------------------EAIWKFSAEPDGGSNGTVIDRADGR 225 (353)
T ss_dssp CEEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSTTSCSCCEEEEECSSS
T ss_pred ccceEEEeCCCCcEEEecCc-----------------------------------cceEEEEeccCCCccceeeecccCc
Confidence 5788999874 789999876 3677774 332 222222 22222
Q ss_pred ccccceEEEEEe-----CCEEEEEecCCCeEEEEeC
Q 023085 256 QLMSFVTSGLQV-----DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 256 ~~~~~~~~~~~~-----~g~l~i~~~~~~~i~~~~~ 286 (287)
.....+.++... +|.|.+++...+...+|+-
T Consensus 226 ~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 226 HLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp SCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred cccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence 345566666542 3688888888888888763
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.94 E-value=0.052 Score=41.70 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=54.7
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCC
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 222 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (287)
..+..+..+ ...+.|..++....+ ....+. .-......+++.++|++.++...
T Consensus 215 ~~~~~~~~~-~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~----------------------- 267 (317)
T d1vyhc1 215 KPGPFLLSG-SRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCAD----------------------- 267 (317)
T ss_dssp --CCEEEEE-ETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEET-----------------------
T ss_pred cCCceeEec-cCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEEEC-----------------------
Confidence 344434444 445678888865321 112222 11223566888888876665544
Q ss_pred ccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 223 KLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
.+.|..++. +++.+..+....+ .++++... ++++.+++-..+.|.+.|
T Consensus 268 -----------dg~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 268 -----------DKTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp -----------TTEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred -----------CCeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 257777885 4677777764332 46777664 444444433444565543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.83 E-value=0.057 Score=44.78 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=104.2
Q ss_pred CC-cEEEEe-cCCeEEEEE--CCceEEEEeeCC--ccccCeEECCCCc-EEEEe-CCCc-------------------eE
Q 023085 4 NG-VIYTAT-RDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGH-LIICD-NANG-------------------LH 56 (287)
Q Consensus 4 ~G-~l~~~~-~~g~i~~~~--~~~~~~~~~~~~--~~~~~i~~d~dg~-l~v~~-~~~g-------------------i~ 56 (287)
|| .||+.+ .+.+|.+++ .-+...+...++ .+. ++...++++ .||.. .... +.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 56 577777 678999999 445545544432 234 777766653 45543 1111 23
Q ss_pred EEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCc---------ceee-------eeeccC----CC
Q 023085 57 KVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPH---------EYCL-------DILEGK----PH 113 (287)
Q Consensus 57 ~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~---------~~~~-------~~~~~~----~~ 113 (287)
.+| .+. +...... . ..+..+..+++|. +|++....|-+.. .|.. +..... .-
T Consensus 177 ~ID~~tm~V~~QV~V-~----g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei 251 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV-S----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 251 (459)
T ss_dssp EEETTTTEEEEEEEE-S----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEecCCceEEEEeee-C----CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence 455 333 1111111 1 2466788999986 5555544332211 1100 000000 01
Q ss_pred ceEEEEeCCCC---eeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC------CC-cceeEEec-cCCCCC
Q 023085 114 GQLLKYDPSSN---ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE------RK-GKLETFAE-NLPGAP 182 (287)
Q Consensus 114 ~~v~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~------~~-~~~~~~~~-~~~~~~ 182 (287)
+++-.+|..+. .+..+.+....|+|+.++|||+++|++.-....+-++|.+.- .+ .+...... ...-.|
T Consensus 252 ngV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP 331 (459)
T d1fwxa2 252 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 331 (459)
T ss_dssp TTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred CCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence 23455565421 222233344579999999999999999988899999997521 11 11111221 122358
Q ss_pred cceeeCCCCCEEEEEec
Q 023085 183 DNINLAPDGTFWIAIIK 199 (287)
Q Consensus 183 ~~i~~d~~G~lwv~~~~ 199 (287)
..-++|.+|+.|.+..-
T Consensus 332 Lht~fd~~g~aytslfi 348 (459)
T d1fwxa2 332 LHTAFDGRGNAYTSLFL 348 (459)
T ss_dssp EEEEECTTSEEEEEETT
T ss_pred cccccCCCceEEEEeec
Confidence 88899999999999753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.081 Score=40.59 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=80.6
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCc-eEEEccCC-cEEEeeecCCcccccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVSEDG-VENFLSYVNGSKLRFA 78 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~~~g-~~~~~~~~~~~~~~~~ 78 (287)
++.+.+...+..+..++ +++........ .. ..++.+++. +.++....+ +..++... ..... ........+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~v 165 (287)
T d1pgua2 91 DGFTAVLTNDDDLLILQSFTGDIIKSVRLN--SP-GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAKP 165 (287)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECS--SC-EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE--CSSCCSSCE
T ss_pred CCceEEEeecccceeeeccceeeeeecccc--ce-eeeeeccCcceeeeccccceeeeeeccccceeee--eeeccCCce
Confidence 44444444555666666 33332222221 11 334445554 455543333 44454322 11111 111112356
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe--eccccccceEEEcc----------CCC
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSR----------DED 146 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i~~~~----------~~~ 146 (287)
..++++++|...++ +...+.|..+|..+++.... .......+.++++| ++.
T Consensus 166 ~~~~~s~~~~~l~~-----------------g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 228 (287)
T d1pgua2 166 SYISISPSETYIAA-----------------GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228 (287)
T ss_dssp EEEEECTTSSEEEE-----------------EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred eEEEeccCcccccc-----------------ccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence 78899999886664 22346788888776654321 11122334455554 334
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++++.+..+.|..|++..+. +.......-......+++.+++.|..+..
T Consensus 229 -~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~~~~l~s~g~ 277 (287)
T d1pgua2 229 -LVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPSTLVSSGA 277 (287)
T ss_dssp -EEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETTEEEEEET
T ss_pred -eeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECCCCEEEEEEC
Confidence 34444556778888875421 11111111112345677667776544443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.11 Score=40.40 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=34.9
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
.|..|+.+|.|..|+ +++..........++.++++.+++.|+.+...+.|...+ ...
T Consensus 25 ~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~ 84 (355)
T d1nexb2 25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84 (355)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc
Confidence 466677889999999 555433323222333378888877766666545566666 444
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=96.45 E-value=0.15 Score=40.63 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=28.3
Q ss_pred eEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CC-E-EEEEecCCCeEEEEeC
Q 023085 235 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DN-H-LYVISLTSNFIGKVQL 286 (287)
Q Consensus 235 ~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g-~-l~i~~~~~~~i~~~~~ 286 (287)
+.+..++. .++.+..+.... .+..+.+. || + ||+++...+.|.++|+
T Consensus 298 ~~v~~~d~~t~~~~~~~~~~~-----~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 298 KEVTSVTGLVGQTSSQISLGH-----DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CeEEEEECCCCcEEEEecCCC-----CeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence 35666664 355566554322 34555553 44 3 6677777788998886
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.03 Score=45.81 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=66.8
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecC-CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVN-GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~-~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
.+++.++|.|..+...+.|..++ .++ ...+..... ......++++++.++|++.++... ...
T Consensus 189 ~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~--------------D~t 254 (393)
T d1sq9a_ 189 SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD--------------SNS 254 (393)
T ss_dssp EEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE--------------ETT
T ss_pred EEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecC--------------CCC
Confidence 56778888665555444577777 555 333322111 112246788999999998875211 011
Q ss_pred CceEEEEeCCCCeeEEeec--------------cccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 113 HGQLLKYDPSSNITTLVAD--------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
.+.+..+|.++++...... .......++|+|+++.| ++....+.|..||++.+
T Consensus 255 ~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 255 FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTT
T ss_pred cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee-EEECCCCEEEEEECCCC
Confidence 1235556776665433211 11234668999999855 45556788999998643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.14 Score=38.96 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=59.0
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE--EEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
..++.++..++................++|+++.++.....++. ++.++... ...+.. ...+......+.+||
T Consensus 151 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~---~~~~~~--~~~~~~~~p~~SPDG 225 (269)
T d2hqsa1 151 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVL--SSTFLDETPSLAPNG 225 (269)
T ss_dssp CEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---CCEEEC--CCSSSCEEEEECTTS
T ss_pred ceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc---ccceEe--ecCccccceEECCCC
Confidence 46777777666554444333334455789999977776654443 44444322 112221 122233456788999
Q ss_pred C-E-EEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 192 T-F-WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 192 ~-l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
+ | |++... ....|+.++.+|+....++..++
T Consensus 226 ~~i~f~s~~~---------------------------------~~~~l~~~~~dg~~~~~lt~~~g 258 (269)
T d2hqsa1 226 TMVIYSSSQG---------------------------------MGSVLNLVSTDGRFKARLPATDG 258 (269)
T ss_dssp SEEEEEEEET---------------------------------TEEEEEEEETTSCCEEECCCSSS
T ss_pred CEEEEEEcCC---------------------------------CCcEEEEEECCCCCEEEEeCCCC
Confidence 6 3 443332 13578889999887777765444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.21 E-value=0.32 Score=41.91 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC-----------ccccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----------QTLVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-----------~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++.++.|+.+| +|+......+.. ....+++.. ++++++++....|+.+| .+|
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~l~Alda~tG 137 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLDGRLIALDAKTG 137 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee-CCeEEEEeCCCEEEEEECCCC
Confidence 68999999999999999 676543221110 001022222 56788888777799999 777
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.037 Score=45.19 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=74.9
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEee------CCccccCeEECCCCcEEEEeCC-C--c-eEEEc-cCC--cEEEe
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFI------DSQTLVGLTSTKEGHLIICDNA-N--G-LHKVS-EDG--VENFL 67 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~------~~~~~~~i~~d~dg~l~v~~~~-~--g-i~~~~-~~g--~~~~~ 67 (287)
++|.|..++.++.|..|+ +++....... ...++..+++.|||++.++... + + |..++ .++ +..+.
T Consensus 194 ~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~ 273 (393)
T d1sq9a_ 194 ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 273 (393)
T ss_dssp TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeec
Confidence 567777777899999999 4433221111 1123337889999987666422 2 2 44556 566 44442
Q ss_pred eecCC--------ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-c----c
Q 023085 68 SYVNG--------SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F----Y 134 (287)
Q Consensus 68 ~~~~~--------~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~----~ 134 (287)
..... .....++++++.++|++.++. ..++.|..+|.++++....... . .
T Consensus 274 ~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~-----------------s~D~~v~vWd~~~g~~~~~l~gH~~~v~~ 336 (393)
T d1sq9a_ 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-----------------GWDGKLRFWDVKTKERITTLNMHCDDIEI 336 (393)
T ss_dssp BC--------CCBSBSSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred cccccccceeeeecccCceeeeccCCCCCeeEEE-----------------CCCCEEEEEECCCCCEEEEECCcCCcccC
Confidence 11000 112357889999999988862 2357888889888875443321 1 1
Q ss_pred ccceEEEccCCCE
Q 023085 135 FANGVALSRDEDY 147 (287)
Q Consensus 135 ~~~~i~~~~~~~~ 147 (287)
....+++++++..
T Consensus 337 ~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 337 EEDILAVDEHGDS 349 (393)
T ss_dssp GGGCCCBCTTSCB
T ss_pred CccEEEECCCCCE
Confidence 2234667787764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.89 E-value=0.46 Score=40.96 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC-----------ccccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----------QTLVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-----------~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++.++.|+.+| +|+......+.. ....++++. ++++++++....++.+| .+|
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~~g~l~alda~tG 148 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAWDGRLIALDAATG 148 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CCcEEEEecccceeeeccccc
Confidence 68999999999999999 676543222110 001133333 67899988777799999 777
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.67 E-value=0.45 Score=39.26 Aligned_cols=107 Identities=10% Similarity=-0.006 Sum_probs=57.5
Q ss_pred CCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCC-cEEEEcCCC-CCCCcceeeeeec--cCCCc
Q 023085 43 EGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSS-KYLPHEYCLDILE--GKPHG 114 (287)
Q Consensus 43 dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g-~l~v~~~~~-~~~~~~~~~~~~~--~~~~~ 114 (287)
||+ ||+.+.. ..|.+++ .+- ...+..... ...+.++.....+ +.||...+. ...... +...+. ....+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn---~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn-dg~~l~d~~~y~~ 173 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVN-DGTNMEDVANYVN 173 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSC-SSSSTTCGG-EEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCC---CCCCceeecccCCCeEEEEccCccccccCC-CCccccchhhcce
Confidence 775 6777655 4688888 444 333332211 2355666666543 456643221 000000 000000 11123
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.+..+|.++.++..-......+..+.++++|+++|+++.
T Consensus 174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence 466889887776543333346778999999999999874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.32 Score=37.43 Aligned_cols=136 Identities=7% Similarity=-0.011 Sum_probs=67.2
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
.|..++.+|.|..|+ .++........... -.++..+++++++ ...+.|..++ ... ...+... ......+.
T Consensus 189 ~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~--v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~ 264 (342)
T d2ovrb2 189 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSL--TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP--NKHQSAVT 264 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCCSC--EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECST--TSCSSCEE
T ss_pred EEEEEeCCCeEEEeecccceeeeEecccccc--eeEEecCCCEEEEEcCCCEEEEEeccccccccccccc--ceeeecee
Confidence 455666788888888 33332222211111 2233334444444 4334577777 444 2222111 11112233
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eecc-----ccccceEEEccCCCEEEEEeC
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG-----FYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-----~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.+ ..+++++++ +..++.|..+|.++++... +... ......++++|++..+..+..
T Consensus 265 ~~--~~~~~~~~s-----------------~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~ 325 (342)
T d2ovrb2 265 CL--QFNKNFVIT-----------------SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325 (342)
T ss_dssp EE--EECSSEEEE-----------------EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred ec--ccCCCeeEE-----------------EcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 33 334566564 2245788888988776533 2211 122456788888864444443
Q ss_pred CC---CEEEEEEec
Q 023085 154 WK---FRCRKYWLK 164 (287)
Q Consensus 154 ~~---~~l~~~~~~ 164 (287)
.+ .+|+.+|.+
T Consensus 326 dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 326 NGTEETKLLVLDFD 339 (342)
T ss_dssp SSSSCCEEEEEECC
T ss_pred CCCCeeEEEEEeCC
Confidence 32 357777754
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.21 E-value=0.81 Score=39.33 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=60.8
Q ss_pred CCcEEEEec-CCeEEEEE--C-CceEEEEeeCC-----------ccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEe
Q 023085 4 NGVIYTATR-DGWIKRLQ--D-GTWVNWKFIDS-----------QTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFL 67 (287)
Q Consensus 4 ~G~l~~~~~-~g~i~~~~--~-~~~~~~~~~~~-----------~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~ 67 (287)
+|.||+++. .+.|+.++ + |+......+.. ....++++. +++||+++....++.+| .+|.....
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee-CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 689999985 68899999 3 66533222110 011144544 67899998766799999 77822221
Q ss_pred eec----CCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE
Q 023085 68 SYV----NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128 (287)
Q Consensus 68 ~~~----~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 128 (287)
... .+.....+- +.. ++.+++.....+. ...+.|..+|..+|+...
T Consensus 141 ~~~~~~~~~~~~t~~p-~v~--~~~vivg~~~~~~------------~~~G~v~a~D~~TG~~~W 190 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAP-FVA--KDTVLMGCSGAEL------------GVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EECCCGGGTCBCCSCC-EEE--TTEEEEECBCGGG------------TCCCEEEEEETTTCCEEE
T ss_pred ccccccccccceeecC-eEe--CCeEEEeeccccc------------cccCcEEEEECCCCcEEE
Confidence 111 111111111 112 4677775433211 124678888888887655
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.18 E-value=0.43 Score=36.01 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=48.1
Q ss_pred C-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEE-eCC-----CceEEEc-cCC-cEEEeeecCC
Q 023085 5 G-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIIC-DNA-----NGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 5 G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~-~~~-----~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
| .|.|. ..|.|+.++ .++.+.+........ ..++.|||+ |.++ ... ..|++++ .+| .+.+......
T Consensus 12 G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~-~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~ 89 (281)
T d1k32a2 12 GDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVIN-NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 89 (281)
T ss_dssp TTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEE-EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred CCEEEEE-eCCcEEEEECCCCCEEEEecCCCccc-CEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence 5 34443 456788888 566666655544445 778899996 5443 211 1388888 555 5555322111
Q ss_pred --ccccccceEEEcCCCcE-EEE
Q 023085 73 --SKLRFANDVVEASDGSL-YFT 92 (287)
Q Consensus 73 --~~~~~~~~l~~d~~g~l-~v~ 92 (287)
.........+..++|.. +++
T Consensus 90 ~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 90 STGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp EETTEECSEEEEECTTCCEEEEE
T ss_pred ccCccccccccccCCCCCEEEEE
Confidence 11123455678888864 443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.77 E-value=1.1 Score=38.51 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=27.5
Q ss_pred ceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEe
Q 023085 234 GAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS 275 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 275 (287)
.+.+..+|.+ |+.++.+..+.+. ...+... +.+|+.||+-
T Consensus 484 dg~l~A~Da~tGe~lW~~~l~~~~-~a~P~ty-~~dGkqYi~v 524 (571)
T d2ad6a1 484 DGYLKALDNKDGKELWNFKMPSGG-IGSPMTY-SFKGKQYIGS 524 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCCc-eecceEE-EECCEEEEEE
Confidence 4688889975 8999999886543 2333333 4588999854
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.67 E-value=0.53 Score=38.92 Aligned_cols=117 Identities=12% Similarity=-0.042 Sum_probs=70.3
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeec-CCccccccceEEEcCCCcE-EE-EcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV-NGSKLRFANDVVEASDGSL-YF-TVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~-~~~~~~~~~~l~~d~~g~l-~v-~~~~~~~~~~~~~~~~~~~~ 111 (287)
.+...++++++..+ ...++.++ .++ .+.+.... .......+.++.+.+||.- .+ ++.. ..| -..
T Consensus 21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~-----~~~-----r~s 89 (470)
T d2bgra1 21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV-----KQW-----RHS 89 (470)
T ss_dssp CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE-----ECS-----SSC
T ss_pred CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc-----cee-----eec
Confidence 45566778766554 45799999 677 55543321 1112235778899999973 22 2110 000 011
Q ss_pred CCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
..+.++.+|.++++...+...........|+|||+.+.+.. ++.++.++..++
T Consensus 90 ~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g 142 (470)
T d2bgra1 90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL 142 (470)
T ss_dssp EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred cCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence 23568889999888765544444455677999999777654 456887776543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=1.1 Score=34.20 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=68.2
Q ss_pred CCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 112 PHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
..+.|..++...++.... ......... ++++++.++.+. ..+.|..|+....+ ....+.........-.++..+
T Consensus 195 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~s-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 269 (342)
T d2ovrb2 195 LDTSIRVWDVETGNCIHTLTGHQSLTSG--MELKDNILVSGN-ADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN 269 (342)
T ss_dssp TTSCEEEEETTTCCEEEEECCCCSCEEE--EEEETTEEEEEE-TTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEEC
T ss_pred CCCeEEEeecccceeeeEecccccceeE--EecCCCEEEEEc-CCCEEEEEeccccc--ccccccccceeeeceeecccC
Confidence 356677788765554332 222222233 445566555554 56778899875422 122222111111112333345
Q ss_pred CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECC-CCccccceEEEEEeC
Q 023085 191 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDP-TGQLMSFVTSGLQVD 268 (287)
Q Consensus 191 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~ 268 (287)
+++.++... .+.|..++. .++.+..+... .+.....+..+....
T Consensus 270 ~~~~~s~s~----------------------------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 270 KNFVITSSD----------------------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp SSEEEEEET----------------------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred CCeeEEEcC----------------------------------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence 556655544 357777775 47777776532 222233467777764
Q ss_pred -CEEEEEecC-C---CeEEEEeCC
Q 023085 269 -NHLYVISLT-S---NFIGKVQLS 287 (287)
Q Consensus 269 -g~l~i~~~~-~---~~i~~~~~~ 287 (287)
+.+..++.. | ..|.+.|++
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCEEEEEeCCCCCeeEEEEEeCC
Confidence 444333332 2 257877765
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.34 E-value=2.1 Score=36.52 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=26.5
Q ss_pred ceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEE
Q 023085 234 GAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~ 274 (287)
.+.+..||.+ |+.++.+..+.+. ...+... +.+|+-||+
T Consensus 478 dg~l~A~Da~tGe~LW~~~l~~~~-~~~P~ty-~~dGkqyv~ 517 (560)
T d1kv9a2 478 AGQMHAYSADKGEALWQFEAQSGI-VAAPMTF-ELAGRQYVA 517 (560)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEE
T ss_pred CCcEEEEECCCCcEeEEEECCCCc-cccCEEE-EECCEEEEE
Confidence 3678899965 9999999987653 3334333 357777765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=1.4 Score=33.64 Aligned_cols=132 Identities=8% Similarity=0.079 Sum_probs=69.5
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEE-EeCCCceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v-~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
+..+..++.|..++ +++........ .... .+.+++++...+ +...+.|..++ +++ ...+. . ....+.
T Consensus 174 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~----h~~~v~ 247 (355)
T d1nexb2 174 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-G----HTALVG 247 (355)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-C----CSSCCC
T ss_pred eeeecccceeeeeecccccceeeeeccccccc-cccccccceeeecccccceEEeeeccccccccccc-c----cccccc
Confidence 44455677777777 33332222222 2223 667788886544 44444577777 666 33332 1 113456
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceE-EEccCCCEEEEEeCCCCEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV-ALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~l~v~~~~~~~l 158 (287)
.++.+ +..+++ +..++.|..+|..+........ ......+ ++.++++ ++++.. .+.|
T Consensus 248 ~~~~~--~~~l~~-----------------~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~g~-d~~i 305 (355)
T d1nexb2 248 LLRLS--DKFLVS-----------------AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDN-ILVSGS-ENQF 305 (355)
T ss_dssp EEEEC--SSEEEE-----------------ECTTSEEEEEETTTCCEEEEEE-CTTCCCCCEEEECSS-EEEEEE-TTEE
T ss_pred ccccc--cceeee-----------------eecccccccccccccceecccc-cCCceEEEEEcCCCC-EEEEEe-CCEE
Confidence 66665 344443 2345678888877554332222 1222333 4566776 444443 5689
Q ss_pred EEEEecCC
Q 023085 159 RKYWLKGE 166 (287)
Q Consensus 159 ~~~~~~~~ 166 (287)
..||+..+
T Consensus 306 ~vwd~~tg 313 (355)
T d1nexb2 306 NIYNLRSG 313 (355)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99997643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.94 E-value=0.34 Score=40.13 Aligned_cols=125 Identities=7% Similarity=-0.057 Sum_probs=67.4
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeC------CccccCeEECCCCc-EEEEeCC---------CceEEEc-cCC-c
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFID------SQTLVGLTSTKEGH-LIICDNA---------NGLHKVS-EDG-V 63 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~------~~~~~~i~~d~dg~-l~v~~~~---------~gi~~~~-~~g-~ 63 (287)
++.++. ..++.|+.++ +++.+.+.... .... +..+.|||+ |.++... ..++.++ .++ .
T Consensus 27 d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~-~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~ 104 (470)
T d2bgra1 27 DHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (470)
T ss_dssp SSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccc-eeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc
Confidence 444333 4567888898 55554443321 1223 678899997 3333211 1256677 566 4
Q ss_pred EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-----------
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----------- 132 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------- 132 (287)
..+... ...+..+.+.+||..++.. ....++.++..+++.......
T Consensus 105 ~~l~~~-----~~~~~~~~~SPDG~~ia~~------------------~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~ 161 (470)
T d2bgra1 105 ITEERI-----PNNTQWVTWSPVGHKLAYV------------------WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (470)
T ss_dssp CCSSCC-----CTTEEEEEECSSTTCEEEE------------------ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred cccccC-----CccccccccccCcceeeEe------------------ecccceEEECCCCceeeeeeccCCCccccccc
Confidence 433221 1234566788888644421 234566666655544332211
Q ss_pred --------ccccceEEEccCCCEEEEEeC
Q 023085 133 --------FYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 133 --------~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.....++.++|||+.|.+...
T Consensus 162 d~~~~~~~~~~~~~~~wSPDGk~ia~~~~ 190 (470)
T d2bgra1 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (470)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred ceeeeeeecCCccccEECCCCCccceeEe
Confidence 122356789999998777653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.11 E-value=0.72 Score=34.65 Aligned_cols=53 Identities=13% Similarity=0.003 Sum_probs=34.6
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC-CC----CEEEEEEecCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK----FRCRKYWLKGE 166 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~-~~----~~l~~~~~~~~ 166 (287)
+.||.++.++++.+.+..........+|+|||+.|.++.. .+ ..|+.++..++
T Consensus 21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 4577777777776666554445566789999998776542 11 24777776543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=1.8 Score=32.14 Aligned_cols=131 Identities=17% Similarity=0.095 Sum_probs=61.4
Q ss_pred eEEEEE-CC-ceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~-~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+..+ +| ..+.+........ ..+..|||+ |.+..... .++.++ ..+ .+.+.... ........+++
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~-sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~spd 93 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----RHNGAPAFSPD 93 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS-----SCEEEEEECTT
T ss_pred EEEEEcCCCCCcEEEecCCCcee-eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeee-----cccccceecCC
Confidence 355555 43 3333433333333 677899995 54443232 477777 444 44443221 23345667788
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEec
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLK 164 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~~ 164 (287)
|..++.... ......+..+.....................++++++.+++..... ..|+.++.+
T Consensus 94 g~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~ 159 (269)
T d2hqsa1 94 GSKLAFALS--------------KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 159 (269)
T ss_dssp SSEEEEEEC--------------TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCeeeEeee--------------cCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecc
Confidence 864442111 1112233333333233322222222222334566666666655433 357777765
Q ss_pred C
Q 023085 165 G 165 (287)
Q Consensus 165 ~ 165 (287)
.
T Consensus 160 ~ 160 (269)
T d2hqsa1 160 G 160 (269)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=90.51 E-value=3.6 Score=33.21 Aligned_cols=137 Identities=10% Similarity=0.075 Sum_probs=71.9
Q ss_pred CcEEEEecCCeEEEEE-CCc-eEEEEeeC---C----ccccCeEECCCC--cEEEEeCC------CceEEEccCC--cEE
Q 023085 5 GVIYTATRDGWIKRLQ-DGT-WVNWKFID---S----QTLVGLTSTKEG--HLIICDNA------NGLHKVSEDG--VEN 65 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~~~-~~~~~~~~---~----~~~~~i~~d~dg--~l~v~~~~------~gi~~~~~~g--~~~ 65 (287)
..+|+++..|+|+|-. .|+ ++.+.... . ... .|++||.+ ++|+++.. .+|++-...| .+.
T Consensus 25 ~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~gi~~S~DgG~TW~~ 103 (427)
T d2ebsa1 25 DLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTI 103 (427)
T ss_dssp TCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEE
T ss_pred CEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCccEEEeCCCCcccee
Confidence 4789999888999887 333 33322111 1 122 67888864 68988632 2455544444 555
Q ss_pred EeeecC----CccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc---c---
Q 023085 66 FLSYVN----GSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---F--- 133 (287)
Q Consensus 66 ~~~~~~----~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~--- 133 (287)
+..... .........|++++. ..+|++. ..++|++-.-....++.+... .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~------------------~~~gl~~S~D~G~tW~~~~~~~~~~~~~ 165 (427)
T d2ebsa1 104 YESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT------------------RTEGIWKSSDRAKTWTNVTSIPDAFTNG 165 (427)
T ss_dssp EECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC------------------SSSCEEEESSTTSSCEECTTSSCCCCSS
T ss_pred ecCCcccCccccCccceeEEEECCCccCcccccc------------------cccceeeecCCCceeeecccCcccccCC
Confidence 543211 011223456888874 4688742 234577654332233333211 1
Q ss_pred cccceEEEccC-CCEEEEEeCCCCEEEE
Q 023085 134 YFANGVALSRD-EDYVVVCESWKFRCRK 160 (287)
Q Consensus 134 ~~~~~i~~~~~-~~~l~v~~~~~~~l~~ 160 (287)
.....++++|. ...+|+.......|++
T Consensus 166 ~~~~~i~~~p~~~~~~y~~~~~~~giy~ 193 (427)
T d2ebsa1 166 IGYTSVIFDPERNGTIYASATAPQGMYV 193 (427)
T ss_dssp SCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred ccceEEEecccccceeeeeeeeccccee
Confidence 11234667763 4557776655556665
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=89.85 E-value=0.32 Score=35.35 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=52.1
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCceEEE----EeeCCcc---ccCeEECCCCcEEEEeCCCceEEEc-cCC--------
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTWVNW----KFIDSQT---LVGLTSTKEGHLIICDNANGLHKVS-EDG-------- 62 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~~~~----~~~~~~~---~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-------- 62 (287)
||+.|.||..+. +.|+|=. +.+...| .+..... ...+.+||+|.||..+.. .+++-. +.+
T Consensus 94 fdP~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~-~l~k~~pP~~~~d~WL~~ 171 (235)
T d1tl2a_ 94 FDPNGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQ-QFYKALPPVSNQDNWLAR 171 (235)
T ss_dssp ECTTSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETT-EEEEECCCSSTTCCHHHH
T ss_pred ECCCceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEECC-cEEEcCCCCCCCchhhhh
Confidence 588999998885 6787765 2221111 1111111 115788999999999744 687776 433
Q ss_pred cEEEeeecCCccccccceEEEcCCCcEEEE
Q 023085 63 VENFLSYVNGSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~ 92 (287)
.+.+. ...-..+..+.+.++|+||-.
T Consensus 172 st~ig----r~~w~~~~fi~Fs~dG~L~~v 197 (235)
T d1tl2a_ 172 ATKIG----QGGWDTFKFLFFSSVGTLFGV 197 (235)
T ss_dssp CEEEE----SSSGGGEEEEEECTTSCEEEE
T ss_pred hhhhc----cCcccCceEEEECCCCcEEEE
Confidence 12221 111234567889999999884
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.74 E-value=3 Score=31.23 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=44.0
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeC--CCCeeEEe--eccccccceEEEccCCCEEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLV--ADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~--~~~~~~~~~i~~~~~~~~l~ 149 (287)
+...+++|++.++|.+.++. ..++.|..||. ........ .........++|++++..+.
T Consensus 10 h~d~I~~l~fsp~~~~L~s~-----------------s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l 72 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLIT-----------------SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEE-----------------ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCCEEEEEEeCCCCEEEEE-----------------ECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEE
Confidence 34578899999999877752 22455555543 32222111 12223446778888766555
Q ss_pred EEeCCCCEEEEEEecC
Q 023085 150 VCESWKFRCRKYWLKG 165 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~ 165 (287)
++....+.+..++...
T Consensus 73 ~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 73 YVGTVQGEILKVDLIG 88 (342)
T ss_dssp EEEETTSCEEEECSSS
T ss_pred EEcccccceeeeeccc
Confidence 5555567788887653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=88.86 E-value=4.3 Score=31.84 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=47.1
Q ss_pred eEEEEeCCCCeeEEeec----cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-CCCCCcceeeCC
Q 023085 115 QLLKYDPSSNITTLVAD----GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAP 189 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~ 189 (287)
.+..||+.+++++.... ......+.++.++++.+.+.......+.+||....+ ....... .+..-...++-.
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~---w~~~~~~~~~r~~~~~~~~~ 129 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS---WIPGPDMQVARGYQSSATMS 129 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE---EEECCCCSSCCSSCEEEECT
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc---ccccccccccccccceeeec
Confidence 46789999887654321 112234667888898444443445678999976432 1111110 111123466677
Q ss_pred CCCEEEEEec
Q 023085 190 DGTFWIAIIK 199 (287)
Q Consensus 190 ~G~lwv~~~~ 199 (287)
+|++|+....
T Consensus 130 dG~v~v~GG~ 139 (387)
T d1k3ia3 130 DGRVFTIGGS 139 (387)
T ss_dssp TSCEEEECCC
T ss_pred CCceeeeccc
Confidence 8999988754
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=87.94 E-value=3.6 Score=29.73 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=58.6
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC-cEEEe---eecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFL---SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~---~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
-+.+||.|-||+.+. ..+++-. ++. -.... .......-.....|.+|++|.||...
T Consensus 91 flffdP~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~------------------ 151 (235)
T d1tl2a_ 91 FLFFDPNGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH------------------ 151 (235)
T ss_dssp EEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE------------------
T ss_pred EEEECCCceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEE------------------
Confidence 578899999999984 4788877 432 11110 00111112345578999999999852
Q ss_pred CCceEEEEeCCCCeeEE-------ee-ccccccceEEEccCCCEEEEEeCCCCEEEE
Q 023085 112 PHGQLLKYDPSSNITTL-------VA-DGFYFANGVALSRDEDYVVVCESWKFRCRK 160 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~-------~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~ 160 (287)
+..+++-.|.++.-.. +. ..-..++.|.|+|+|. ||... ++.+++
T Consensus 152 -~~~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~--~g~~Y~ 204 (235)
T d1tl2a_ 152 -GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYE 204 (235)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEE
T ss_pred -CCcEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEe--CCeEEe
Confidence 2357776664332111 11 1123456788999998 55553 345554
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=87.53 E-value=7.6 Score=33.11 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCcEEEEec-CCeEEEEE---CCceEEEEeeCC-----------ccccCeEECCC-----CcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATR-DGWIKRLQ---DGTWVNWKFIDS-----------QTLVGLTSTKE-----GHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~-~g~i~~~~---~~~~~~~~~~~~-----------~~~~~i~~d~d-----g~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+.+. .+.++.++ +|+......+.. ....++++.++ .++++++....|+.+| .+|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 588999774 57899998 365432211110 11125555322 2488887666799999 778
Q ss_pred --cEEEeee--cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE
Q 023085 63 --VENFLSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128 (287)
Q Consensus 63 --~~~~~~~--~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 128 (287)
....... ........+-.++ ++.+++...+.++. ..+.|..+|..+|++..
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~---~~~vivg~~~~e~~------------~~G~v~A~Da~TG~~~W 196 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELG------------VRGYLTAYDVKTGEQVW 196 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGT------------CCCEEEEEETTTCCEEE
T ss_pred ceeccccccccccccccccCCcEE---CCeEEEeecccccc------------ccCceEEEECCCCcEEE
Confidence 2222111 0111111111121 56778854442221 24678888888777654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.65 E-value=8.2 Score=31.64 Aligned_cols=61 Identities=5% Similarity=-0.073 Sum_probs=35.8
Q ss_pred EEEccCCCEEEEEeCC----CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 139 VALSRDEDYVVVCESW----KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++++++++.+|+.... ...|+++++++....++-.-.......-..+.++++|+.++-+..
T Consensus 365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 4689999999987653 335888887653222111000001112346788999998886655
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.61 E-value=6 Score=29.19 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=22.6
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
....++++|+++.|.++.. .+.|..|+...
T Consensus 164 ~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~ 193 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDV-MGKILLYDLQS 193 (287)
T ss_dssp CEEEEEECTTSSEEEEEET-TSCEEEEETTT
T ss_pred ceeEEEeccCccccccccc-cccccceeecc
Confidence 3567889999997777764 56788898754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=84.35 E-value=7.8 Score=30.24 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=68.5
Q ss_pred CceEEEEeeCCccccCeEECCCCcEEEEeCC------C------ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCC
Q 023085 22 GTWVNWKFIDSQTLVGLTSTKEGHLIICDNA------N------GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG 87 (287)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~------~------gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g 87 (287)
|++......+..+.+..++-.+|++|+.... . -+.++| .++ ++....... .......+.++..+|
T Consensus 9 g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g 87 (387)
T d1k3ia3 9 GRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNG 87 (387)
T ss_dssp CEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTS
T ss_pred CccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC-CcccceeEEEEecCC
Confidence 3444443333334412334568898876321 0 156788 555 444322211 112234567788899
Q ss_pred cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEeCC-----CCEEEE
Q 023085 88 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESW-----KFRCRK 160 (287)
Q Consensus 88 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~~-----~~~l~~ 160 (287)
.+++... .....+.+||+.++......... ..-+..+..+||+.+++.... ...+.+
T Consensus 88 ~i~v~Gg----------------~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~ 151 (387)
T d1k3ia3 88 QIVVTGG----------------NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 151 (387)
T ss_dssp CEEEECS----------------SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred cEEEeec----------------CCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeee
Confidence 9999531 12346888999888876653321 223456677788844443221 135788
Q ss_pred EEecC
Q 023085 161 YWLKG 165 (287)
Q Consensus 161 ~~~~~ 165 (287)
||+..
T Consensus 152 yd~~~ 156 (387)
T d1k3ia3 152 YSPSS 156 (387)
T ss_dssp EETTT
T ss_pred ecCCC
Confidence 88654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.06 E-value=3.7 Score=33.86 Aligned_cols=62 Identities=6% Similarity=-0.020 Sum_probs=32.9
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCC----ccccCeEECCCCc-EEEEeCC---------CceEEEc-cCC-cEEE
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGH-LIICDNA---------NGLHKVS-EDG-VENF 66 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~----~~~~~i~~d~dg~-l~v~~~~---------~gi~~~~-~~g-~~~~ 66 (287)
+.++.-+.+|.|..++ +++...+..... .+. ...+.+||+ +++.... ..++.++ .++ ..++
T Consensus 28 ~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l 106 (465)
T d1xfda1 28 TEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL 106 (465)
T ss_dssp SCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC
T ss_pred CcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccc-eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec
Confidence 3333334667788888 444443332211 122 456789996 4554321 1356677 677 6665
Q ss_pred e
Q 023085 67 L 67 (287)
Q Consensus 67 ~ 67 (287)
.
T Consensus 107 ~ 107 (465)
T d1xfda1 107 D 107 (465)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=83.89 E-value=9 Score=30.63 Aligned_cols=111 Identities=10% Similarity=0.095 Sum_probs=60.5
Q ss_pred CeEECCCC--cEEEEeCCCceEEEccCC--cEEEeeecC--CccccccceEEEcCC--CcEEEEcCCCCCCCcceeeeee
Q 023085 37 GLTSTKEG--HLIICDNANGLHKVSEDG--VENFLSYVN--GSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDIL 108 (287)
Q Consensus 37 ~i~~d~dg--~l~v~~~~~gi~~~~~~g--~~~~~~~~~--~~~~~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~ 108 (287)
+|+++|.. .+|+++...||++-...| .+++..... ......+.+|++|+. ..+|++....
T Consensus 16 ~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~------------ 83 (427)
T d2ebsa1 16 GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY------------ 83 (427)
T ss_dssp EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC------------
T ss_pred EEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccc------------
Confidence 78888755 688887667898876444 555532111 122335678999986 4688752110
Q ss_pred ccCCCceEEEEeCCCCeeEEeeccc---------cccceEEEccC-CCEEEEEeCCCCEEEE
Q 023085 109 EGKPHGQLLKYDPSSNITTLVADGF---------YFANGVALSRD-EDYVVVCESWKFRCRK 160 (287)
Q Consensus 109 ~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~-~~~l~v~~~~~~~l~~ 160 (287)
.....++|++=.-....+..+.... .....++++|. ...+|++.. .+.|++
T Consensus 84 ~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~-~~gl~~ 144 (427)
T d2ebsa1 84 VGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR-TEGIWK 144 (427)
T ss_dssp TTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS-SSCEEE
T ss_pred cCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc-ccceee
Confidence 0112345665543322344433221 12345888885 455777653 345665
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.08 E-value=7.3 Score=33.07 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=34.9
Q ss_pred ceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEe----------------------cCCCeEEEEeC
Q 023085 234 GAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS----------------------LTSNFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~----------------------~~~~~i~~~~~ 286 (287)
.+.+..+|.+ |+.++.+..+.+. ...+... +.+|+-||+- ..++.|.+|.|
T Consensus 506 dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty-~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~L 579 (582)
T d1flga_ 506 DGYFKAFDAKSGKELWKFQTGSGI-VSPPITW-EQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKL 579 (582)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEEC
T ss_pred CCeEEEEECCCCcEeEEEECCCCc-cccCEEE-EECCEEEEEEEeCCCCccccccccccccccccCCCCEEEEEeC
Confidence 3578889965 9999999986553 3334333 3677777653 24678888876
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=81.60 E-value=14 Score=31.30 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=26.8
Q ss_pred ceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEE
Q 023085 234 GAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~ 274 (287)
.+.+..||.+ |+.++.+..+.+. ...+.... .+|+=||+
T Consensus 493 Dg~l~A~Da~TGe~LW~~~~~~~~-~a~P~tY~-~dGkQYva 532 (596)
T d1w6sa_ 493 DGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYT-HKGTQYVA 532 (596)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCC-CSCCEEEE-ETTEEEEE
T ss_pred CCeEEEEECCCCcEeeEEECCCCc-ccCCeEEE-ECCEEEEE
Confidence 4688899965 9999999886553 33444443 47776665
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.44 E-value=8.9 Score=28.20 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=18.3
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC-cEEEee
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLS 68 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~ 68 (287)
+++.|...-++++....+...+- +.| +..+..
T Consensus 108 S~~yddk~vvF~Gased~~~LYviegGklrkL~~ 141 (313)
T d2hu7a1 108 SGVDTGEAVVFTGATEDRVALYALDGGGLRELAR 141 (313)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred EeeecCceEEEecccCCceEEEEEeCCceeeecc
Confidence 44445444566766666655544 566 777654
|