Citrus Sinensis ID: 023105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MNNGNHNMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNASLSTASLSISIPSSHDFPIFSSRAP
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccHccccccHHHHHHHHcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
mnngnhnmsainrfpftasQWQELEHQALIFKYMVsgipvppdlLFTIKrsyyfdrsppsaakhfthqHQHVewncfqvglgrkidpepgrcrrtdgkkwrcskeaypdskycerhmhrgknrsrkpvelntstctanksssalsryvygpkeevdehaffsepsgkvrsfsavsmddswqltpltmssscssssskqrsfsglqsdysdlqlkscadntpkqqdkqpeeipqktvhrffdewppksrdswldlddkssknaslstaslsisipsshdfpifssrap
Flexible Loop (DISEMBL)
MNNGNHNMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWNCFQVglgrkidpepgrcrrtdgkkwrcskeaypdskycerhmhrgknrsrkpvelntstctanksssalsRYVYGPKEEVDEhaffsepsgkvrSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADntpkqqdkqpeeipqktvhrffdewppksRDSWLDLDDKSSKNASLStaslsisipsshdfpifssrap
Low Complexity Region (SEG)
MNNGNHNMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMssscssssskqrsfsglqsDYSDLQLKSCADNTPKQQDKQPEEIPQKTVHRFFDEWPPksrdswldlddksskNaslstaslsisipssHDFPIFSSRAP
Disordered region (IsUnstruct)
**********INRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWNCFQVGLGRKID*********************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**************PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKR****************HQHQHVEWNC*****************************AYPDSKYC**********************************************************************************************************************************************************SLSISIPSS***********
Disordered Region (DISEMBL)
MNNGNHNMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSA********QHVEWNCFQVGLGRKIDPEPG***************AYPDSKYCERHMHRGKNRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPL******************LQSDYSDLQLKSCA*************IPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNASLSTASLSISIPSSHDFPIFSSRAP
Disordered Region (DISPRO)
**********INRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHR**********************************************************************************************************************RF******KS****************LSTASLSI*IPS************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNGNHNMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNASLSTASLSISIPSSHDFPIFSSRAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q6AWY4	348	Growth-regulating factor	yes	no	0.864	0.712	0.390	9e-46
Q8L8A6	397	Growth-regulating factor	yes	no	0.404	0.292	0.655	1e-43
Q6AWY8	397	Growth-regulating factor	no	no	0.411	0.297	0.655	9e-43
A2XA73	396	Growth-regulating factor	N/A	no	0.407	0.295	0.661	1e-42
Q9ZQ12	244	Growth-regulating factor	no	no	0.728	0.856	0.436	6e-42
Q6AWY7	301	Growth-regulating factor	no	no	0.846	0.807	0.373	2e-37
Q6ZIK5	394	Growth-regulating factor	no	no	0.362	0.263	0.622	3e-37
Q6AWY6	387	Growth-regulating factor	no	no	0.365	0.271	0.634	5e-37
Q8L8A8	535	Growth-regulating factor	no	no	0.445	0.239	0.503	1e-36
Q6AWY3	603	Growth-regulating factor	no	no	0.386	0.184	0.572	8e-32

>sp|Q6AWY4|GRF5_ORYSJ Growth-regulating factor 5 OS=Oryza sativa subsp. japonica GN=GRF5 PE=2 SV=1

 Score =  184 bits (466), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 162/330 (49%), Gaps = 82/330 (24%)

Query: 16  FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIK------RSYYFDRSPPSAAKHFTHQH 69
           FTA+QW ELE QALI+KY+V+G+PVP DLL  I+       +Y F      AA  F H H
Sbjct: 25  FTAAQWAELEQQALIYKYLVAGVPVPGDLLLPIRPHSSAAATYSFANP---AAAPFYHHH 81

Query: 70  QHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
            H   + +    G+K+DPEP RCRRTDGKKWRCSKEA+PDSKYCERHMHRG+NRSRKPVE
Sbjct: 82  HHPSLSYYAY-YGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVE 140

Query: 130 LNTS-------------------------TCTANKSSSAL------------------SR 146
             T+                         + T    +  L                  S+
Sbjct: 141 SKTAAPAPQSQPQLSNVTTATHDTDAPLPSLTVGAKTHGLSLGGAGSSQFHVDAPSYGSK 200

Query: 147 YVYGPKEEVDEHAFFSEPSGKVRSFSAVS-MDDSWQLTPLTMSSSCSSSSSKQRSFSGLQ 205
           Y  G K +V E +FFS  SG  R F+  S  D SW   P   SS      SK R    L 
Sbjct: 201 YSLGAKADVGELSFFSGASGNTRGFTIDSPTDSSWHSLP---SSVPPYPMSKPRDSGLLP 257

Query: 206 SDYS--------DLQLKSCADNTPKQQDK-------------QPEEIPQKTVHRFFDEWP 244
             YS        +L   + A  + +Q+ +             + E  P +    FFDEWP
Sbjct: 258 GAYSYSHLEPSQELGQVTIASLSQEQERRSFGGGAGGMLGNVKHENQPLRP---FFDEWP 314

Query: 245 PKSRDSWLDLDDKSSKNASLSTASLSISIP 274
            + RDSW ++D++ S   S ST  LSISIP
Sbjct: 315 GR-RDSWSEMDEERSNQTSFSTTQLSISIP 343

Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8L8A6|GRF5_ARATH Growth-regulating factor 5 OS=Arabidopsis thaliana GN=GRF5 PE=1 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 97/122 (79%), Gaps = 6/122 (4%)

Query: 10  AINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQH 69
            I R PFT +QW+ELEHQALI+KYMVSG+PVPP+L+F+I+RS   D S  S        H
Sbjct: 11  TIGRPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRS--LDTSLVSRLL----PH 64

Query: 70  QHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
           Q + W C+Q+G GRK DPEPGRCRRTDGKKWRCS+EAYPDSKYCE+HMHRG+NR+RK ++
Sbjct: 65  QSLGWGCYQMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124

Query: 130 LN 131
            N
Sbjct: 125 QN 126

Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWY8|GRF1_ORYSJ Growth-regulating factor 1 OS=Oryza sativa subsp. japonica GN=GRF1 PE=3 SV=1

 Score =  174 bits (440), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 93/119 (78%), Gaps = 1/119 (0%)

Query: 14  FPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVE 73
           +PFTASQWQELEHQALI+KYM SG P+P DL+  ++RS+  D +  ++          + 
Sbjct: 17  YPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLG 76

Query: 74  WNCFQVGLGRKI-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELN 131
           W CF +G GRK  DPEPGRCRRTDGKKWRCSKEAYPDSKYCE+HMHRGKNRSRKPVE++
Sbjct: 77  WGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEMS 135

Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XA73|GRF1_ORYSI Growth-regulating factor 1 OS=Oryza sativa subsp. indica GN=GRF1 PE=2 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 92/118 (77%), Gaps = 1/118 (0%)

Query: 14  FPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVE 73
           +PFTASQWQELEHQALI+KYM SG P+P DL+  ++RS+  D +  ++          + 
Sbjct: 17  YPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLG 76

Query: 74  WNCFQVGLGRKI-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEL 130
           W CF +G GRK  DPEPGRCRRTDGKKWRCSKEAYPDSKYCE+HMHRGKNRSRKPVE+
Sbjct: 77  WGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEM 134

Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9ZQ12|GRF6_ARATH Growth-regulating factor 6 OS=Arabidopsis thaliana GN=GRF6 PE=2 SV=2

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 141/252 (55%), Gaps = 43/252 (17%)

Query: 13  RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSP----------PSAA 62
           R PFT SQW+ELE+QAL+FKY+ + +PVPP LLF IKR + F  S           P+ +
Sbjct: 4   RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLS 63

Query: 63  KHFTHQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKN 122
            HF        WN +++G+GRKID EPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKN
Sbjct: 64  PHFG-------WNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKN 116

Query: 123 R--SRK--PVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFS-EPSGKVRSFSAVSMD 177
           R  SRK  P +   +    + S    S Y+           FFS EPSG ++S S  +M+
Sbjct: 117 RSSSRKPPPTQFTPNLFLDSSSRRRRSGYM---------DDFFSIEPSGSIKSCSGSAME 167

Query: 178 DSWQLTPLTMSSSCSSSSSKQ----RSFSGLQSDYSDLQLKSCADNTPKQQD-KQPEEIP 232
           D+          SC   ++++    R    L +D    +     +   KQ+D    EE  
Sbjct: 168 DN-------DDGSCRGINNEEKQPDRHCFILGTDLRTRERPLMLEEKLKQRDHDNEEEQG 220

Query: 233 QKTVHRFFDEWP 244
            K  +RF DEWP
Sbjct: 221 SKRFYRFLDEWP 232

Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWY7|GRF2_ORYSJ Growth-regulating factor 2 OS=Oryza sativa subsp. japonica GN=GRF2 PE=3 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 140/289 (48%), Gaps = 46/289 (15%)

Query: 12  NRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYY------FDRSPPSAAKHF 65
            R  FTA+QWQELEHQALI+KYM +G PVPPDLL  ++           D  P       
Sbjct: 8   GRCLFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLRHRAAAAAAADVDTVP-----SL 62

Query: 66  THQHQHVEWNCFQVG---LGRKI-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGK 121
                H+ W C+       GR++ DPEPGRCRRTDGKKWRCS+EAY +SKYCE+HMHRGK
Sbjct: 63  AFPPHHLGWGCYGAAAAQYGRRVEDPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGK 122

Query: 122 NRSRKPVELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVR------------ 169
           NRSRKPVE+      A    SALS  +  P  + D  ++ +     ++            
Sbjct: 123 NRSRKPVEMPPPAAAAVYRPSALS--ISPPPHDADAPSYGAGAGAPLQLHLDSFHASTSP 180

Query: 170 --SFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSGLQSDYSDLQLKSCADNTPKQQDKQ 227
             S+   +   S  L P + +      S  +     L    +DL L   AD+        
Sbjct: 181 PPSYHRYAHTSSAPLFPSSAAGYGGGWSLSKEHCLTLGGAAADLSLDKPADH----HHDA 236

Query: 228 PEEIPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNASLSTASLSISIPSS 276
                +K + RFFDEW P+S D     D             LSISIP++
Sbjct: 237 TSATTEKPLRRFFDEW-PRSDDGRTPWDGT----------QLSISIPTA 274

Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZIK5|GRF4_ORYSJ Growth-regulating factor 4 OS=Oryza sativa subsp. japonica GN=GRF4 PE=2 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 87/114 (76%), Gaps = 10/114 (8%)

Query: 16  FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEWN 75
           FTA+Q++ELE QALI+KY+V+G+PVPPDL+  I+R         S A  F + H  + + 
Sbjct: 65  FTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRRGL------DSLAARF-YNHPALGYG 117

Query: 76  CFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
            +    G+K+DPEPGRCRRTDGKKWRCSKEA PDSKYCERHMHRG+NRSRKPVE
Sbjct: 118 PY---FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168

Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6AWY6|GRF3_ORYSJ Growth-regulating factor 3 OS=Oryza sativa subsp. japonica GN=GRF3 PE=3 SV=2

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 87/115 (75%), Gaps = 10/115 (8%)

Query: 15  PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEW 74
           PFTA+Q++ELE QALI+KY+V+G+PVP DLL  I+R         S A  F H H  + +
Sbjct: 53  PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRRGL------DSLASRFYH-HPVLGY 105

Query: 75  NCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
             +    G+K+DPEPGRCRRTDGKKWRCSKEA PDSKYCERHMHRG+NRSRKPVE
Sbjct: 106 GSY---FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 157

Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8L8A8|GRF2_ARATH Growth-regulating factor 2 OS=Arabidopsis thaliana GN=GRF2 PE=1 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 99/143 (69%), Gaps = 15/143 (10%)

Query: 15  PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYY-FDRSPPSAAKHFTHQHQHVE 73
           PFT +QW ELE QALI+KY+ + +PVP  LL +IK+S+Y +   PPS+            
Sbjct: 164 PFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSS----------FG 213

Query: 74  WNCFQVGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNT 132
           W  F +G  G  +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVE+ +
Sbjct: 214 WGTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQS 273

Query: 133 STCTANKSSSALSRYVYGPKEEV 155
                N++++A S+ V  P++ V
Sbjct: 274 G---QNQTAAAASKAVTTPQQPV 293

Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWY3|GRF6_ORYSJ Growth-regulating factor 6 OS=Oryza sativa subsp. japonica GN=GRF6 PE=2 SV=2

 Score =  137 bits (345), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 79/117 (67%), Gaps = 6/117 (5%)

Query: 13  RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHV 72
           R PFT SQW ELEHQALI+KY+ +  PVP  LL  I+RS     SP     +F      +
Sbjct: 156 RGPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRRSLTSPYSP----AYFGSST--L 209

Query: 73  EWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
            W  FQ+G     DPEPGRCRRTDGKKWRCS++A  D KYCERHM+RG++RSRK VE
Sbjct: 210 GWGSFQLGYSGSADPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVE 266

Transcription activator that plays a regulatory role in gibberellin-induced stem elongation.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
449446835	319	PREDICTED: growth-regulating factor 5-li	0.930	0.836	0.542	1e-76
359482485	381	PREDICTED: uncharacterized protein LOC10	0.843	0.635	0.446	3e-59
255550479	253	conserved hypothetical protein [Ricinus	0.473	0.537	0.728	7e-54
359484275	508	PREDICTED: uncharacterized protein LOC10	0.421	0.238	0.772	7e-54
297738575	387	unnamed protein product [Vitis vinifera]	0.421	0.312	0.772	1e-53
356541060	341	PREDICTED: uncharacterized protein LOC10	0.898	0.756	0.434	2e-53
297737265	373	unnamed protein product [Vitis vinifera]	0.878	0.675	0.438	4e-52
359489864	330	PREDICTED: uncharacterized protein LOC10	0.878	0.763	0.438	7e-52
356543183	327	PREDICTED: uncharacterized protein LOC10	0.909	0.798	0.417	9e-52
449468402	336	PREDICTED: growth-regulating factor 3-li	0.902	0.770	0.404	7e-51

>gi|449446835|ref|XP_004141176.1| PREDICTED: growth-regulating factor 5-like [Cucumis sativus] gi|449488197|ref|XP_004157965.1| PREDICTED: growth-regulating factor 5-like [Cucumis sativus]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 174/321 (54%), Positives = 204/321 (63%), Gaps = 54/321 (16%)

Query: 8   MSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTH 67
           MSA NRFPFTA+QWQELEHQALIFKYMVSG+P+PP+LL++IK +       P  ++ F H
Sbjct: 1   MSARNRFPFTAAQWQELEHQALIFKYMVSGVPIPPELLYSIKAT---SLDTPFISRLFPH 57

Query: 68  QHQHVE---WNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS 124
           Q+  V    WN  Q+G GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS
Sbjct: 58  QYPQVSAVGWNYLQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS 117

Query: 125 RKPVELNTSTC---TANKSSSALS------------------------------------ 145
           RKPVE    T    ++N S+ A+S                                    
Sbjct: 118 RKPVEQVLKTTPLNSSNPSTPAISSITHNSETHPHPHPHPFHYQNPSASSHPSLLPDYRR 177

Query: 146 -RYVYGPKEEVDEHAFFSEP-SGKVRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSFSG 203
            RY+YG KE   E++F  E  SG +R FS  SMDDSWQLTPLTMS   SSSSS+ ++ S 
Sbjct: 178 NRYIYGEKE---ENSFVREQHSGNMRGFSGSSMDDSWQLTPLTMSC--SSSSSRYKNCSA 232

Query: 204 LQSDYSD-LQLKSCADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNA 262
           LQ DYS  LQL+S       Q     ++ PQKTVH FFDEW PK R+SW DLDDKSS   
Sbjct: 233 LQGDYSSYLQLQSFEKYNEMQSKMDRDQEPQKTVHHFFDEWSPKHRESWDDLDDKSSNTG 292

Query: 263 SLSTASLSISIPSSHDFPIFS 283
           S+S   LS+S P++ D  IFS
Sbjct: 293 SVSATRLSMSTPNT-DSSIFS 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482485|ref|XP_002273821.2| PREDICTED: uncharacterized protein LOC100247998 [Vitis vinifera]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 155/347 (44%), Positives = 186/347 (53%), Gaps = 105/347 (30%)

Query: 15  PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEW 74
           PFTASQWQELEHQALIFKY+VSG+P+P DL+ T+KRS        S+       HQ + W
Sbjct: 59  PFTASQWQELEHQALIFKYIVSGVPIPADLICTVKRSLD------SSLSSRLFPHQPIGW 112

Query: 75  NCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTST 134
            CFQ+G GRK DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE+ ++T
Sbjct: 113 GCFQMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVISAT 172

Query: 135 -----------------------------------CTANKSSSALS-------------- 145
                                              C + +++S+ S              
Sbjct: 173 NPSPTISSINSNPSSTTSLYPFLYPHPSSSRPPGSCLSPQATSSYSTHHLFLDSGSYSQA 232

Query: 146 ----RYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMDDSWQLTPLTMSSSCSSSSSKQRSF 201
               R+ +G +E VDE AFF E SG VR      + DS+  TPLTMSSS           
Sbjct: 233 DRDYRHHHGMREGVDERAFFPEASGTVR-----GLHDSY--TPLTMSSS----------- 274

Query: 202 SGLQSDYSDLQLKSCADNTPKQ-----------------QDKQPEEI-----PQKTVHRF 239
                 YS  Q +S ADN PKQ                 +  +P ++      QK +H F
Sbjct: 275 ----KGYSHFQYQSPADN-PKQQQEQQEQQHCFVLGTDFKSSRPIKVERDGEAQKPLHHF 329

Query: 240 FDEWPPKSRDSWLDLDDKSSKNASLSTASLSISIP-SSHDFPIFSSR 285
           F EWP K+RDSWLDL++    +AS ST  LSISIP SSH      SR
Sbjct: 330 FGEWPLKNRDSWLDLEEDPPTHASFSTTQLSISIPMSSHKLLASDSR 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550479|ref|XP_002516290.1| conserved hypothetical protein [Ricinus communis] gi|223544776|gb|EEF46292.1| conserved hypothetical protein [Ricinus communis]

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 116/140 (82%), Gaps = 4/140 (2%)

Query: 8   MSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTH 67
           MS  N+FPFTASQWQELEHQALIFKYMVSGIP+P DLLFTIKRS       P ++K F  
Sbjct: 2   MSGTNKFPFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIKRSCL---DSPLSSKLFPR 58

Query: 68  QHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKP 127
           Q  H+ W+CFQ+GLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKP
Sbjct: 59  QPPHIGWSCFQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKP 118

Query: 128 VEL-NTSTCTANKSSSALSR 146
           VE+ N +  T N + S++++
Sbjct: 119 VEVANQTATTTNPTVSSVTK 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484275|ref|XP_002278189.2| PREDICTED: uncharacterized protein LOC100261173 [Vitis vinifera]

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 95/123 (77%), Positives = 108/123 (87%), Gaps = 2/123 (1%)

Query: 8   MSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTH 67
           MS  NRFPFTA+QWQELEHQALIFKYM SG+P+PPDL+F+IKRS   D   P++    TH
Sbjct: 1   MSGRNRFPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRS--LDSPLPTSKLFPTH 58

Query: 68  QHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKP 127
           Q QH+ WNCFQ+GLGRK+DPEPGRCRRTDGKKWRC+KEAYPDSKYCERHMHRG+NRSRKP
Sbjct: 59  QSQHIGWNCFQMGLGRKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKP 118

Query: 128 VEL 130
           VE+
Sbjct: 119 VEV 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738575|emb|CBI27820.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/123 (77%), Positives = 108/123 (87%), Gaps = 2/123 (1%)

Query: 8   MSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTH 67
           MS  NRFPFTA+QWQELEHQALIFKYM SG+P+PPDL+F+IKRS   D   P++    TH
Sbjct: 2   MSGRNRFPFTATQWQELEHQALIFKYMASGMPIPPDLIFSIKRS--LDSPLPTSKLFPTH 59

Query: 68  QHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKP 127
           Q QH+ WNCFQ+GLGRK+DPEPGRCRRTDGKKWRC+KEAYPDSKYCERHMHRG+NRSRKP
Sbjct: 60  QSQHIGWNCFQMGLGRKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKP 119

Query: 128 VEL 130
           VE+
Sbjct: 120 VEV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541060|ref|XP_003539001.1| PREDICTED: uncharacterized protein LOC100787567 [Glycine max]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/329 (43%), Positives = 176/329 (53%), Gaps = 71/329 (21%)

Query: 12  NRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQH 71
            R PFT SQWQELEHQALIFKYM++G+PVP DL+F I+ S++   S  S +  F H H  
Sbjct: 22  GRSPFTVSQWQELEHQALIFKYMLAGLPVPLDLVFPIQNSFH---STISLSHAFFH-HPT 77

Query: 72  VEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELN 131
           + +  F    G+K+DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRG+NRSRKPVE  
Sbjct: 78  LSYCSF---YGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQ 134

Query: 132 TST--------CTANKSSSA---------LS----------------------------- 145
           T T         T    S A         LS                             
Sbjct: 135 TMTHSSSTVTSLTVTGGSGASKGTVNFQNLSTNTFGNLQGTDSGTDHTNYHLDSIPYAIP 194

Query: 146 ----RYVYGPKEEVDEHAFFSEPSGKVRSFSAVS-MDDSWQLTPLTMSSSCSSSSSKQRS 200
               RYV G K E  EH FFSE SG  +     S ++++W   PL  +   S S+SK  +
Sbjct: 195 SKEYRYVQGLKSEGGEHCFFSEASGSNKVLQMESQLENTW---PLMSTRVASFSTSKSSN 251

Query: 201 FSGLQSDYSDLQLKSC--ADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDLDDKS 258
            S L SDY      S         +++ QP       +  FF+EW PKSR+SW  L+D+ 
Sbjct: 252 DSLLHSDYPRHSFLSGEYVSGEHVKEEGQP-------LRPFFNEW-PKSRESWSGLEDER 303

Query: 259 SKNASLSTASLSISIPSSHDFPIFSSRAP 287
           S   + ST  LSISIP S +F   SS++P
Sbjct: 304 SNQTAFSTTQLSISIPMSSNFSATSSQSP 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737265|emb|CBI26466.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 143/326 (43%), Positives = 176/326 (53%), Gaps = 74/326 (22%)

Query: 15  PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEW 74
           PFT SQWQELEHQALIFKY+++G+PVPPDL+  I++S+       S +  F H H  + +
Sbjct: 66  PFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFE------SMSSRFFH-HPTMGY 118

Query: 75  NCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTST 134
             F    G+K+DPEPGRCRRTDGKKWRCSK+AYPDSKYCERHMHRG+NRSRKPVE  T+T
Sbjct: 119 CSF---YGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVESQTTT 175

Query: 135 --------------------------------------CTANKSSSALSRYVYGP----- 151
                                                    N+S   +    YG      
Sbjct: 176 QSSSTVTSLTVTGGSGSGAGTFQNLPLQNFNNPQGGPGSGTNQSQFHMEPIPYGIPNKDY 235

Query: 152 ------KEEVDEHAFFSEPSGKVRSFSAVS-MDDSWQLTPLTMSSSCSSSSSKQRSFSGL 204
                 K EV EH+FFSE SG  R     S +D +W L P  +SS   S SS+    S L
Sbjct: 236 RYLHGLKPEVGEHSFFSEASGSNRGLQMDSPLDSTWPLMPSRVSSFPPSKSSEN---SIL 292

Query: 205 QSDYSDLQLKSC--ADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNA 262
           QSDY      S   A     +Q+ Q       ++  FFDEW PK+RDSW  L+++ S   
Sbjct: 293 QSDYPQHSFFSSEFASGEVVKQEGQ-------SLRPFFDEW-PKTRDSWSGLEEERSNQT 344

Query: 263 SLSTASLSISIP-SSHDFPIFSSRAP 287
           S ST  LSISIP +S DF   SSR+P
Sbjct: 345 SFSTTQLSISIPMASSDFSTTSSRSP 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489864|ref|XP_002270427.2| PREDICTED: uncharacterized protein LOC100259737 [Vitis vinifera]

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 143/326 (43%), Positives = 176/326 (53%), Gaps = 74/326 (22%)

Query: 15  PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQHVEW 74
           PFT SQWQELEHQALIFKY+++G+PVPPDL+  I++S+       S +  F H H  + +
Sbjct: 23  PFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFE------SMSSRFFH-HPTMGY 75

Query: 75  NCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTST 134
             F    G+K+DPEPGRCRRTDGKKWRCSK+AYPDSKYCERHMHRG+NRSRKPVE  T+T
Sbjct: 76  CSF---YGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVESQTTT 132

Query: 135 --------------------------------------CTANKSSSALSRYVYGP----- 151
                                                    N+S   +    YG      
Sbjct: 133 QSSSTVTSLTVTGGSGSGAGTFQNLPLQNFNNPQGGPGSGTNQSQFHMEPIPYGIPNKDY 192

Query: 152 ------KEEVDEHAFFSEPSGKVRSFSAVS-MDDSWQLTPLTMSSSCSSSSSKQRSFSGL 204
                 K EV EH+FFSE SG  R     S +D +W L P  +SS   S SS+    S L
Sbjct: 193 RYLHGLKPEVGEHSFFSEASGSNRGLQMDSPLDSTWPLMPSRVSSFPPSKSSEN---SIL 249

Query: 205 QSDYSDLQLKSC--ADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDLDDKSSKNA 262
           QSDY      S   A     +Q+ Q       ++  FFDEW PK+RDSW  L+++ S   
Sbjct: 250 QSDYPQHSFFSSEFASGEVVKQEGQ-------SLRPFFDEW-PKTRDSWSGLEEERSNQT 301

Query: 263 SLSTASLSISIP-SSHDFPIFSSRAP 287
           S ST  LSISIP +S DF   SSR+P
Sbjct: 302 SFSTTQLSISIPMASSDFSTTSSRSP 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543183|ref|XP_003540042.1| PREDICTED: uncharacterized protein LOC100787226 [Glycine max]

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 139/333 (41%), Positives = 173/333 (51%), Gaps = 72/333 (21%)

Query: 7   NMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFT 66
             S+  R PFT SQWQELEHQALIFKYMV+G+PVPPDL+  I++S  FD    S   H  
Sbjct: 12  GFSSNGRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKS--FD----STLSHAF 65

Query: 67  HQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRK 126
             H  + +  F    G+K+DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRG+NRSRK
Sbjct: 66  FHHPTLSYCSF---YGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRK 122

Query: 127 PVELNTSTCTANKSSSALS----------------------------------------- 145
           PVE  T T +++  +S                                            
Sbjct: 123 PVESQTMTHSSSTVTSLTVTGGGDSNGTVNFQNLPTNAFGNLQGTDSGTDRTNYHLDSIP 182

Query: 146 --------RYVYGPKEEVDEHAFFSEPSGKVRSFSAVS-MDDSWQLTPLTMSSSCSSSSS 196
                   R + G K E  EH FFSE SG  +     S ++++W   P   +   S S+S
Sbjct: 183 YAIPSKEYRCLQGLKSEGGEHCFFSEASGSNKVLQMESQLENTW---PSMSTRVASFSTS 239

Query: 197 KQRSFSGLQSDYSDLQLKSC--ADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDL 254
           K  + S L SDY      S   A     +++ QP       +  F +EW PKSR+SW  L
Sbjct: 240 KSSTDSLLHSDYPQHSFLSGEYASGEHVKEEGQP-------LRPFSNEW-PKSRESWSGL 291

Query: 255 DDKSSKNASLSTASLSISIPSSHDFPIFSSRAP 287
           +D  S   + ST  LSISIP S DF   SS++P
Sbjct: 292 EDDISNQTAFSTTQLSISIPMSSDFSATSSQSP 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468402|ref|XP_004151910.1| PREDICTED: growth-regulating factor 3-like [Cucumis sativus] gi|449484096|ref|XP_004156783.1| PREDICTED: growth-regulating factor 3-like [Cucumis sativus]

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 135/334 (40%), Positives = 178/334 (53%), Gaps = 75/334 (22%)

Query: 7   NMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFT 66
            M  +NR PFT  QWQELE QALIFK+M++G PVPP+L+  I++S+       S +  F 
Sbjct: 23  GMMGMNRSPFTVLQWQELELQALIFKFMMAGQPVPPELVLLIQKSF------ESISHRFF 76

Query: 67  HQHQHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRK 126
           H H  + +  F    G+K+DPEPGRCRRTDGKKWRCSK+AYPDSKYCERHMHRG+NRSRK
Sbjct: 77  H-HPTMAYCSF---YGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRK 132

Query: 127 PVELNTSTCTANKSSS--------------------ALS--------------------- 145
           PVE  T T +++  +S                    ALS                     
Sbjct: 133 PVESQTMTQSSSTVTSLTATGSSSTGTGSFHGLPLNALSNSQTTTTGTSQPHYPLDSIPY 192

Query: 146 -------RYVYGPKEEVDEHAFFSEPSGKVRSFSA-VSMDDSWQLTPLTMSSSCSSSSSK 197
                  RY+ G + E   H+FFSE SG  R+      +D++W   P+  S S S  +SK
Sbjct: 193 GIPSKDYRYLQGLRPEAGVHSFFSEASGSSRAVQMDAPIDNTW---PMMSSRSPSFPASK 249

Query: 198 QRSFSGLQSDYSD---LQLKSCADNTPKQQDKQPEEIPQKTVHRFFDEWPPKSRDSWLDL 254
               S  QS Y+       +  +  T KQ+         +++   FDEW P++R+SW  L
Sbjct: 250 STENSIFQSGYAQHSFFGGEYASGETLKQEG--------QSLQPLFDEW-PRTRESWTGL 300

Query: 255 DDKSSKNASLSTASLSISIP-SSHDFPIFSSRAP 287
           DD+ S   S ST  LSISIP +S D    SS++P
Sbjct: 301 DDERSNQTSFSTTQLSISIPMASSDLSTTSSKSP 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
UNIPROTKB|A2XA73	396	GRF1 "Growth-regulating factor	0.449	0.325	0.656	4.1e-52
TAIR|locus:2051597	244	GRF6 "growth-regulating factor	0.557	0.655	0.554	7.7e-48
TAIR|locus:2088272	397	GRF5 "growth-regulating factor	0.557	0.403	0.550	2.6e-47
TAIR|locus:2137549	535	GRF2 "growth-regulating factor	0.445	0.239	0.503	2.8e-34
TAIR|locus:2085221	380	GRF4 "growth-regulating factor	0.515	0.389	0.464	3e-33
TAIR|locus:2044873	398	GRF3 "growth-regulating factor	0.445	0.321	0.531	7.9e-33
TAIR|locus:2059206	530	GRF1 "growth-regulating factor	0.463	0.250	0.470	1.3e-31
TAIR|locus:2134986	493	GRF8 "growth-regulating factor	0.153	0.089	0.681	6.9e-22
TAIR|locus:2043595	431	GRF9 "growth-regulating factor	0.452	0.301	0.378	6.6e-18
TAIR|locus:2168676	365	GRF7 "growth-regulating factor	0.153	0.120	0.727	2.2e-14

UNIPROTKB|A2XA73 GRF1 "Growth-regulating factor 1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 461 (167.3 bits), Expect = 4.1e-52, Sum P(3) = 4.1e-52
 Identities = 90/137 (65%), Positives = 104/137 (75%)

Query:    13 RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRS---PPSAAKHFTHQH 69
             R+PFTASQWQELEHQALI+KYM SG P+P DL+  ++RS+  D +    PS A  F  Q 
Sbjct:    16 RYPFTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLA--FPPQP 73

Query:    70 QHVEWNCFQVGLGRKI-DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPV 128
               + W CF +G GRK  DPEPGRCRRTDGKKWRCSKEAYPDSKYCE+HMHRGKNRSRKPV
Sbjct:    74 S-LGWGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPV 132

Query:   129 ELNTSTCTANKSSSALS 145
             E++ +T     SSSA S
Sbjct:   133 EMSLAT-PPPPSSSATS 148

GO:0005634 "nucleus" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0030912 "response to deep water" evidence=IEP

TAIR|locus:2051597 GRF6 "growth-regulating factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 96/173 (55%), Positives = 118/173 (68%)

Query:    13 RFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKH--FTHQ-H 69
             R PFT SQW+ELE+QAL+FKY+ + +PVPP LLF IKR + F  S  S++    F+    
Sbjct:     4 RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLS 63

Query:    70 QHVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS--RKP 127
              H  WN +++G+GRKID EPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS  RKP
Sbjct:    64 PHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP 123

Query:   128 VELNTSTCTANKSSSALSRYVYGPKEEVDEHAFFS-EPSGKVRSFSAVSMDDS 179
                  +      SSS   R  Y     +D+  FFS EPSG ++S S  +M+D+
Sbjct:   124 PPTQFTPNLFLDSSSRRRRSGY-----MDD--FFSIEPSGSIKSCSGSAMEDN 169

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=TAS

TAIR|locus:2088272 GRF5 "growth-regulating factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
 Identities = 92/167 (55%), Positives = 113/167 (67%)

Query:    11 INRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQ 70
             I R PFT +QW+ELEHQALI+KYMVSG+PVPP+L+F+I+RS   D S  S        HQ
Sbjct:    12 IGRPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRS--LDTSLVSRLL----PHQ 65

Query:    71 HVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEL 130
              + W C+Q+G GRK DPEPGRCRRTDGKKWRCS+EAYPDSKYCE+HMHRG+NR+RK ++ 
Sbjct:    66 SLGWGCYQMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLDQ 125

Query:   131 NTSTCTANKSSSALSRYVYGPKEEVDEHAFFSEPSGKVRSFSAVSMD 177
             N +T T   S S        P   +   +  S  S    S S+ SMD
Sbjct:   126 NQTTTTPLTSPSLSFTNNNNPSPTLSSSSS-SNSSSTTYSASSSSMD 171

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=IMP;TAS

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

TAIR|locus:2137549 GRF2 "growth-regulating factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 72/143 (50%), Positives = 99/143 (69%)

Query:    15 PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYY-FDRSPPSAAKHFTHQHQHVE 73
             PFT +QW ELE QALI+KY+ + +PVP  LL +IK+S+Y +   PPS+            
Sbjct:   164 PFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSS----------FG 213

Query:    74 WNCFQVGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNT 132
             W  F +G  G  +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVE+ +
Sbjct:   214 WGTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQS 273

Query:   133 STCTANKSSSALSRYVYGPKEEV 155
                  N++++A S+ V  P++ V
Sbjct:   274 GQ---NQTAAAASKAVTTPQQPV 293

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=IGI

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2085221 GRF4 "growth-regulating factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 72/155 (46%), Positives = 100/155 (64%)

Query:    16 FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKH-FTHQHQHVEW 74
             F+ +QWQELE QALI++YM++G  VP +LL  IK+S    +SP     H   H   H + 
Sbjct:    83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSL-LHQSPMHFLHHPLQHSFPHHQP 141

Query:    75 NCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELNTST 134
             + +  G G  +DPEPGRC+RTDGKKWRCS++     KYC+RH+HRG+NRSRKPVE  T+T
Sbjct:   142 SWYW-GRGA-MDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVETATTT 199

Query:   135 CTANKSSSALSRYVYGPK--EEVDEHAFFSEPSGK 167
              T   +++A S +V G +     + + FFS  S +
Sbjct:   200 ITTTATTTA-SSFVLGEELGHGPNNNHFFSSGSSQ 233

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2044873 GRF3 "growth-regulating factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 75/141 (53%), Positives = 92/141 (65%)

Query:    12 NRFP-----FTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFT 66
             +RFP     F+ +QWQELE QALI++YM++G  VP +LL  IK+S       PS   H  
Sbjct:    68 SRFPKMGSFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLL--HLSPSYFLHHP 125

Query:    67 HQH-QHVEWNCFQVGLGRK-IDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRS 124
              QH  H +   +   LGR  +DPEPGRCRRTDGKKWRCS++ +   KYCERHMHRG+NRS
Sbjct:   126 LQHLPHYQPAWY---LGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRS 182

Query:   125 RKPVELNTSTCTANKSSSALS 145
             RKPVE  T T  A  +S A S
Sbjct:   183 RKPVETPT-TVNATATSMASS 202

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=IGI

GO:0009624 "response to nematode" evidence=IEP

GO:0048364 "root development" evidence=IMP

GO:0061062 "regulation of nematode larval development" evidence=IMP

TAIR|locus:2059206 GRF1 "growth-regulating factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 71/151 (47%), Positives = 99/151 (65%)

Query:     1 MNNGN-H-NMSAINRFPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYY-FDRS 57
             MN  N H N+    + PF+ +QW ELE QALI+KY+ + +PVP  LL ++K+S++ +   
Sbjct:   117 MNTSNMHGNLLTGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYGSL 176

Query:    58 PPSAAKHFTHQHQHVEWNCFQVGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERH 116
             PP++            W  F +G  G  +DPEPGRCRRTDGKKWRCS++A PD KYCERH
Sbjct:   177 PPNS----------FGWGSFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERH 226

Query:   117 MHRGKNRSRKPVE----LNTSTCTANKSSSA 143
             ++RG++RSRKPVE     NT+   A  +++A
Sbjct:   227 INRGRHRSRKPVEGQNGHNTNAAAAASAAAA 257

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009624 "response to nematode" evidence=IEP

GO:0048364 "root development" evidence=IMP

GO:0061062 "regulation of nematode larval development" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2134986 GRF8 "growth-regulating factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
 Identities = 30/44 (68%), Positives = 34/44 (77%)

Query:    86 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
             D EP RC+RTDGKKWRCS+   PD KYCERH H+ + RSRK VE
Sbjct:   243 DLEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVE 286

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0048366 "leaf development" evidence=TAS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2043595 GRF9 "growth-regulating factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 6.6e-18, P = 6.6e-18
 Identities = 53/140 (37%), Positives = 79/140 (56%)

Query:    12 NRFPFT-ASQWQELEHQALIFKYMVSGIPVPPDLLFTIKRSYYFDRSPPSAAKHFTHQHQ 70
             N++P+  A+Q  E   QAL+++Y+ +G+ VP  L+  I  S        S++ ++ +   
Sbjct:    20 NKWPWMKAAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLAL-----SSSSNYNYHSS 74

Query:    71 HVEWNCFQVGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEL 130
              +  N     +   ++ EP RCRRTDGKKWRCS       KYCERHMHRG+ RSRK VE 
Sbjct:    75 SLLSNKGVTHIDT-LETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKLVES 133

Query:   131 NT---STCTANKSSSALSRY 147
             ++   S+ T   ++  L RY
Sbjct:   134 SSEVASSSTKYDNTYGLDRY 153

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=TAS

TAIR|locus:2168676 GRF7 "growth-regulating factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 32/44 (72%), Positives = 37/44 (84%)

Query:    86 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
             D EPGRCRRTDGKKWRC+KE   + KYCE+H+HRG+ RSRK VE
Sbjct:   107 DLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      287       238   0.00091  113 3  11 22  0.43    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  232 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.85u 0.08s 21.93t   Elapsed:  00:00:01
  Total cpu time:  21.85u 0.08s 21.93t   Elapsed:  00:00:01
  Start:  Sat May 11 10:57:51 2013   End:  Sat May 11 10:57:52 2013

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0048366 "leaf development" evidence=TAS

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016460001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (298 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam08879	46	pfam08879, WRC, WRC	5e-21
pfam08880	37	pfam08880, QLQ, QLQ	3e-14
smart00951	36	smart00951, QLQ, QLQ is named after the conserved	4e-09

>gnl|CDD|192171 pfam08879, WRC, WRC

 Score = 83.5 bits (207), Expect = 5e-21
 Identities = 32/44 (72%), Positives = 36/44 (81%)

Query: 86  DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129
           DPEPGRCRRTDGKKWRCS+   P  K CERH+HRG++RSRK  E
Sbjct: 1   DPEPGRCRRTDGKKWRCSRRVLPGKKLCERHLHRGRSRSRKSKE 44

The WRC domain, named after the conserved Trp-Arg-Cys motif, contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding. Length = 46

>gnl|CDD|204086 pfam08880, QLQ, QLQ

 Score = 65.1 bits (160), Expect = 3e-14
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 15 PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKR 50
          PFT +Q QEL+ Q L +KY+ +  PVPP L   I++
Sbjct: 2  PFTPAQLQELKAQILAYKYLAANQPVPPHLQQPIQK 37

The QLQ domain is named after the conserved Gln, Leu, Gln motif. The QLQ domain is found at the N-terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. This domain has thus been postulated to be involved in mediating protein interactions. Length = 37

>gnl|CDD|214931 smart00951, QLQ, QLQ is named after the conserved Gln, Leu, Gln motif

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 14 FPFTASQWQELEHQALIFKYMVSGI-PVPPDLLFTI 48
           PFT +Q + L  Q L +KY+++   PVPP+LL  I
Sbjct: 1  SPFTPAQLELLRAQILAYKYLLARNQPVPPELLQAI 36

QLQ is found at the N-terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PF08879	46	WRC: WRC; InterPro: IPR014977 WRC is named after t	99.83
PF08880	37	QLQ: QLQ; InterPro: IPR014978 QLQ is named after t	99.58

>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H)

Probab=99.83  E-value=1.2e-21  Score=139.87  Aligned_cols=46  Identities=59%  Similarity=1.147  Sum_probs=44.6

Q ss_pred             CCCCCcccccCCCcceecCccCCCchhHHHHhhccCCCCCCCCCCC
Q 023105           86 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELN  131 (287)
Q Consensus        86 dpep~RCrRtDGKkWRCsr~a~~~~k~Ce~H~~rgr~Rsrk~ve~~  131 (287)
                      |||++||+|+|||+|||+++|++|++|||+||+++|+|++|.||.+
T Consensus         1 d~e~~RC~R~DGK~WrC~~~a~~g~~~Ce~H~~~~r~r~~~~~~~~   46 (46)
T PF08879_consen    1 DPEPWRCRRNDGKGWRCSRRALPGYSLCEHHLDRGRSRSRKSKEPS   46 (46)
T ss_pred             CCccceeeCCCCCccccCCccCCCccHHHHHHHHHhhccCCCCCCC
Confidence            7999999999999999999999999999999999999999999964

It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding

>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif

Probab=99.58  E-value=7.1e-16  Score=105.70  Aligned_cols=37  Identities=46%  Similarity=0.772  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q 023105           14 FPFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIKR   50 (287)
Q Consensus        14 ~pFT~~Qw~ELE~QalIykYm~ag~pVP~~Ll~pi~~   50 (287)
                      .+||++||+|||+|++|||||++|+|||++|+.||++
T Consensus         1 s~FT~~Ql~~L~~Qi~ayK~l~~~~pVP~~l~~~I~~   37 (37)
T PF08880_consen    1 SPFTPAQLQELRAQILAYKYLARNQPVPPQLQQAIQK   37 (37)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhhhC
Confidence            4899999999999999999999999999999999985

QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d2qtva5	75	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	82.79

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.79  E-value=0.18  Score=36.38  Aligned_cols=17  Identities=24%  Similarity=0.720  Sum_probs=13.6

Q ss_pred             CCCCcccc--------------cCCCcceec
Q 023105           87 PEPGRCRR--------------TDGKKWRCS  103 (287)
Q Consensus        87 pep~RCrR--------------tDGKkWRCs  103 (287)
                      -+|.||||              .+||+|+|-
T Consensus         7 ~~PvrC~r~~C~ayiNP~~~~~~~~~~W~C~   37 (75)
T d2qtva5           7 YNPVVCSGPHCKSILNPYCVIDPRNSSWSCP   37 (75)
T ss_dssp             SCCCBCCSTTTCCBCCTTCCEETTTTEEECT
T ss_pred             CCCceeCCCCCCcEECCceEEecCCCEEEec
Confidence            36889988              379999994