Citrus Sinensis ID: 023106
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UTC5 | 235 | Putative uridine kinase C | yes | no | 0.616 | 0.753 | 0.338 | 1e-24 | |
| P11664 | 237 | Uncharacterized protein Y | N/A | no | 0.668 | 0.810 | 0.285 | 2e-13 | |
| C5DXG0 | 375 | ATP-dependent kinase YFH7 | yes | no | 0.473 | 0.362 | 0.305 | 1e-11 | |
| C5DNG5 | 347 | ATP-dependent kinase YFH7 | yes | no | 0.717 | 0.593 | 0.257 | 4e-11 | |
| P43591 | 353 | ATP-dependent kinase YFH7 | yes | no | 0.411 | 0.334 | 0.243 | 1e-08 | |
| A7A245 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.411 | 0.334 | 0.243 | 1e-08 | |
| B5VI33 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.411 | 0.334 | 0.243 | 1e-08 | |
| B3LUL5 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.411 | 0.334 | 0.243 | 1e-08 | |
| C8Z7U0 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.411 | 0.334 | 0.243 | 1e-08 | |
| C7GYB3 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.411 | 0.334 | 0.243 | 1e-08 |
| >sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 18/195 (9%)
Query: 109 IVGLAGPPGAGKSTLAAEVVR--------RINKIWPQKASSFDSQD------PKEAHARR 154
++GLAG PG+GKSTL A + + I KI P + ++ P++A A R
Sbjct: 31 LIGLAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMDGFHYSLEELDRFDNPEKARALR 90
Query: 155 GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
GA WTF+ L + ++ ++ +YAPSFDH +GDPV DDI V +++++I +GNYL
Sbjct: 91 GAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPKNRILIFEGNYLL 150
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAEL 270
L+ W D ++D K ++ V+ A RV RH+ +G + A R + ND N
Sbjct: 151 LNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEEEAIERTDRNDMINLTF 210
Query: 271 IMKSKKNADLVIKSI 285
+ K+ D+V++ +
Sbjct: 211 VEKNMVTPDIVLQQL 225
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 43/235 (18%)
Query: 78 VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
++A+ +E + + + LL A VN + +V L PPG GKSTL W
Sbjct: 12 IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63
Query: 136 PQKASSFDSQDPK-------------------EAHARR---GAPWTFNPLLLLNCLKNLR 173
A QDP+ +AH R GAP TF+ + +NLR
Sbjct: 64 EYLAQ----QDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFD---VAKLTENLR 116
Query: 174 N--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 231
+G P +D DPVED + V +VIV+GN+L LD W +++S D FI
Sbjct: 117 QVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCDFSIFI 174
Query: 232 EVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286
+R++ R I+ G VA+ D PN E ++ + + A+L+++ +
Sbjct: 175 HAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVEMTE 229
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 34/170 (20%)
Query: 137 QKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYA----------- 180
Q SSF Q+P+EAH RRG+P TF+ K L GS A
Sbjct: 195 QCLSSF--QNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTY 252
Query: 181 ---------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK--- 228
P FDH + DP D + ++VI++G YL D W+ V +
Sbjct: 253 DPHFPCIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEILQNTGSL 312
Query: 229 --WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPNAELIMKS 274
W+I+++ +RV KRH ++G V + R+++ ND NA LI K+
Sbjct: 313 LVWYIDIEDHVIEERVAKRHFNSGLADSVEQGRLKFQGNDLLNARLIRKN 362
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 104/264 (39%), Gaps = 58/264 (21%)
Query: 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV- 128
IP E + + +V + Q P + N + +VG+ G P + + A +
Sbjct: 81 IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNSIRVENVAPLEP 140
Query: 129 ----RRINKIWPQKA--------SSFDSQDPKEAHARRGAPWTFNP--------LLLLNC 168
+I KI P FD DP EAH RRG+P TF+ LL C
Sbjct: 141 SNHDYKIAKIVPMDGFHLSRRHLDHFD--DPVEAHRRRGSPPTFDSNNCLQLCKLLAKTC 198
Query: 169 L--------KNLRNQG---------------SVYAPSFDHGVGDPVEDDILVGLQHKVVI 205
K + G S+Y P FDH + DP V ++++
Sbjct: 199 TIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPSTGQHCVDAFTRIIV 258
Query: 206 VDGNYLFLDGGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPP--DVAKW 258
++G YL LD W+D+ F + W +++ +D QRV KRH+ +G +
Sbjct: 259 LEGLYLLLDEDNWRDIYPTFKDTHAVIVWKLDLGVDVLEQRVAKRHLQSGLAATLEAGVE 318
Query: 259 RIEYNDRPNAELIMKSKKNADLVI 282
R ND NA I + AD ++
Sbjct: 319 RFRMNDLINALRIKEHCLAADDIV 342
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
+DP+ AH RRG+P TF+ L K L
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
I++D + +RV KRH+ +G +A+ R ++
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
+DP+ AH RRG+P TF+ L K L
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
I++D + +RV KRH+ +G +A+ R ++
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
+DP+ AH RRG+P TF+ L K L
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
I++D + +RV KRH+ +G +A+ R ++
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
+DP+ AH RRG+P TF+ L K L
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
I++D + +RV KRH+ +G +A+ R ++
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
+DP+ AH RRG+P TF+ L K L
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
I++D + +RV KRH+ +G +A+ R ++
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------------------------- 176
+DP+ AH RRG+P TF+ L K L
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQKI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
I++D + +RV KRH+ +G +A+ R ++
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain JAY291) (taxid: 574961) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| 255559925 | 312 | ATP binding protein, putative [Ricinus c | 0.993 | 0.913 | 0.656 | 1e-111 | |
| 225437219 | 312 | PREDICTED: putative uridine kinase C227. | 0.993 | 0.913 | 0.627 | 1e-104 | |
| 449452236 | 309 | PREDICTED: putative uridine kinase C227. | 0.878 | 0.815 | 0.646 | 1e-103 | |
| 224082738 | 231 | predicted protein [Populus trichocarpa] | 0.714 | 0.887 | 0.727 | 4e-93 | |
| 356572241 | 309 | PREDICTED: ATP-dependent kinase YFH7-lik | 0.965 | 0.896 | 0.573 | 1e-92 | |
| 297843102 | 301 | phosphoribulokinase/uridine kinase [Arab | 0.951 | 0.906 | 0.593 | 5e-91 | |
| 42561642 | 301 | P-loop containing nucleoside triphosphat | 0.958 | 0.913 | 0.578 | 1e-89 | |
| 357157235 | 322 | PREDICTED: putative uridine kinase C227. | 0.763 | 0.680 | 0.604 | 4e-83 | |
| 326508064 | 322 | predicted protein [Hordeum vulgare subsp | 0.829 | 0.739 | 0.575 | 2e-82 | |
| 195626218 | 325 | ATP binding protein [Zea mays] | 0.790 | 0.698 | 0.590 | 6e-82 |
| >gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/314 (65%), Positives = 241/314 (76%), Gaps = 29/314 (9%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGK-TRSLV 59
M+VSSLS T RAC S +TES LKR PS H +S S +R + Q +F + T V
Sbjct: 1 MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58
Query: 60 QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
+ S+KVLCS RR++PVVEA M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59 FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118
Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHAR 153
KST+A+EVVRR+NKIWPQKASSFDSQ +P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178
Query: 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213
RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238
Query: 214 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 273
G WKD+SSMFDEKW+I+VD+DTAM+RVLKRHISTGKPPDVAKWRI+YNDRPNAELI+K
Sbjct: 239 GEGAWKDISSMFDEKWYIDVDIDTAMERVLKRHISTGKPPDVAKWRIDYNDRPNAELIIK 298
Query: 274 SKKNADLVIKSIDI 287
S+KNADL+I+SI+
Sbjct: 299 SRKNADLIIRSINF 312
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/314 (62%), Positives = 241/314 (76%), Gaps = 29/314 (9%)
Query: 1 MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLV 59
M+V+S ST+ + SSSS+ E L++ ++P + + S RR+ QP+FG TRS
Sbjct: 1 MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58
Query: 60 QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59 GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118
Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHAR 153
KSTLA+EV R+NK+WPQKASSFDSQ DP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178
Query: 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213
RGAPWTF+P LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238
Query: 214 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 273
G WK+VSSMFDEKWFIEVD++T+M+RV+KRH+STGKPPD+AKWRIEYNDRPNAELI+K
Sbjct: 239 QEGDWKEVSSMFDEKWFIEVDINTSMERVVKRHVSTGKPPDIAKWRIEYNDRPNAELIIK 298
Query: 274 SKKNADLVIKSIDI 287
SK+NADLVI+S++
Sbjct: 299 SKRNADLVIRSVNF 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/280 (64%), Positives = 218/280 (77%), Gaps = 28/280 (10%)
Query: 34 HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQR 93
H FLSF+ + + G+T + + V CSQ+RE VVE RC+D++YD LA+R
Sbjct: 32 HNFLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCIDDIYDDLARR 89
Query: 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-------- 145
LLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS DSQ
Sbjct: 90 LLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMDSQVNPADVAA 149
Query: 146 ------------------DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187
+P+EAHARRGAPWTFNP LLL CLK LR+QGSVYAPSFDHGV
Sbjct: 150 VLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGSVYAPSFDHGV 209
Query: 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247
GDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKWF+E+D+D +M+RVLKRHI
Sbjct: 210 GDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKWFVEIDIDKSMERVLKRHI 269
Query: 248 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287
STGKPPDVAKWRIEYNDRPNAELIMKSKKNADL+I+S+D
Sbjct: 270 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLLIRSVDF 309
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 168/231 (72%), Positives = 188/231 (81%), Gaps = 26/231 (11%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
MDE+YDALA RLLPT+ ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1 MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60
Query: 143 DSQ--------------------------DPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 176
D Q +P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61 DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120
Query: 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 236
SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEKWFI+VD+D
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKWFIDVDID 180
Query: 237 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287
TAMQRVLKRHISTGKPPDVAKWRIEYND+PNAELI+KSKKNADLVI+SID
Sbjct: 181 TAMQRVLKRHISTGKPPDVAKWRIEYNDQPNAELIIKSKKNADLVIRSIDF 231
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/319 (57%), Positives = 217/319 (68%), Gaps = 42/319 (13%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHHGFLSFSWIRRNANAQPVFGK 54
M+ + STT R + + + PL R PS S S R + Q +
Sbjct: 1 MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54
Query: 55 TRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
TR + KVL +++ +I VVE +DE+YDAL R+LP +++SN N K +VGLAG
Sbjct: 55 TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110
Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPK 148
PPGAGKSTLA EV RRINK+WP+KASSFDSQ +P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170
Query: 149 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208
EAHARRGAPWTFNPL LL CLKNLR GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230
Query: 209 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNA 268
NYL L+ GVWK++SS+FDEKWFI++D+D AMQRVLKRHISTGKPPD+AK RIE NDR NA
Sbjct: 231 NYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGKPPDIAKQRIENNDRLNA 290
Query: 269 ELIMKSKKNADLVIKSIDI 287
ELIMKSKKNAD++IKSID
Sbjct: 291 ELIMKSKKNADIIIKSIDF 309
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/315 (59%), Positives = 224/315 (71%), Gaps = 42/315 (13%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S EL S GF W Q + S +
Sbjct: 1 MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46
Query: 61 NKTSLKVL--CSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
KT+ + L CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGA
Sbjct: 47 RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106
Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHA 152
GKSTLA EVVRR+NK+WPQKASSFD++ DPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166
Query: 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIM 272
L+ G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+
Sbjct: 227 LEEGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELII 286
Query: 273 KSKKNADLVIKSIDI 287
KSK NADL+I+S++I
Sbjct: 287 KSKTNADLLIRSVNI 301
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/313 (57%), Positives = 221/313 (70%), Gaps = 38/313 (12%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S S GF W + + P+ R +
Sbjct: 1 MEVSSFSTVPRYCNSRSFVPEL--------SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48
Query: 61 NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N + CSQ++++ VV+ CMDE+YD LA+RL+PT+A + N+K +VGLAGPPGAGK
Sbjct: 49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108
Query: 121 STLAAEVVRRINKIWPQKASSFDSQ--------------------------DPKEAHARR 154
ST+A EVVRR+NK+WPQKA+SFD++ DPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168
Query: 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228
Query: 215 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 274
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 229 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 288
Query: 275 KKNADLVIKSIDI 287
K NADL+I+S++I
Sbjct: 289 KTNADLLIRSMNI 301
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357157235|ref|XP_003577730.1| PREDICTED: putative uridine kinase C227.14-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 148/245 (60%), Positives = 181/245 (73%), Gaps = 26/245 (10%)
Query: 69 CSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128
C QR+ P +EA+ M+EVYDALA+ LL +++ K+IVGLAGPPGAGKST+A+EVV
Sbjct: 76 CYQRQGAPQIEAKSMEEVYDALAEHLLSVLKDVDHLDSKYIVGLAGPPGAGKSTVASEVV 135
Query: 129 RRINKIWPQKASSFDS--------------------------QDPKEAHARRGAPWTFNP 162
RR+N W +K ++ S +DPKEAHARRGAPWTFNP
Sbjct: 136 RRVNMHWSKKHATDSSLISNEDIATMLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFNP 195
Query: 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 222
L LNCLK LR +GSVYAPSFDHGVGDPVE+DI V QHK+VIV+GNYL L+ +W+D+
Sbjct: 196 SLFLNCLKTLRKEGSVYAPSFDHGVGDPVENDIFVKPQHKIVIVEGNYLLLEENIWRDIR 255
Query: 223 SMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 282
MFDEKWFIE+D+D +MQRVL+RHI TGK PDVA WRI YNDRPNAELIM+S+K+ADLVI
Sbjct: 256 GMFDEKWFIEIDIDVSMQRVLQRHIGTGKEPDVAAWRISYNDRPNAELIMQSRKDADLVI 315
Query: 283 KSIDI 287
+S+D
Sbjct: 316 RSVDF 320
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326508064|dbj|BAJ86775.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 188/264 (71%), Gaps = 26/264 (9%)
Query: 49 QPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKH 108
QP F + + K V C QR+ P +EA+ M+EVYDALA+ LL N++ K+
Sbjct: 56 QPAFHQPVTRATWKKKHNVTCYQRQGAPQIEAKSMEEVYDALAEHLLSALKSIDNLDSKY 115
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-------------------------SSFD 143
IVGLAGPPGAGKST+A+EVVRR+NK W QK S D
Sbjct: 116 IVGLAGPPGAGKSTVASEVVRRVNKRWSQKHAKDGSPNSDEDIATMLPMDGFHLYRSQLD 175
Query: 144 S-QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
+ +DPKEAHARRGAPWTFNP L L CL+ L+ +GSVYAPSFDHGVGDPVE+DI V QHK
Sbjct: 176 AMEDPKEAHARRGAPWTFNPSLFLKCLQILKEEGSVYAPSFDHGVGDPVENDIFVKPQHK 235
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
+VIV+GNYL L+ VW+++ +MFDEKWFI++D+D +MQRVL+RHI TGK PDVA WRI Y
Sbjct: 236 IVIVEGNYLLLEEDVWREIRNMFDEKWFIDIDIDVSMQRVLQRHIGTGKEPDVAAWRISY 295
Query: 263 NDRPNAELIMKSKKNADLVIKSID 286
NDRPNAELI++SK+ ADLVI+S+D
Sbjct: 296 NDRPNAELILESKRAADLVIRSVD 319
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195626218|gb|ACG34939.1| ATP binding protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 150/254 (59%), Positives = 182/254 (71%), Gaps = 27/254 (10%)
Query: 61 NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
N V C QR++ P VEAR M+EVYDALA+ LL +++ K+IVGLAGPPGAGK
Sbjct: 70 NGKRRNVPCYQRQQTPQVEARSMEEVYDALAEHLLSVLKNIEHLDSKYIVGLAGPPGAGK 129
Query: 121 STLAAEVVRRINKIWPQKAS--------------------------SFDS-QDPKEAHAR 153
ST+A+EVVRR+N W QK + D+ +DPKEAHAR
Sbjct: 130 STVASEVVRRVNTFWSQKHTKGSGAPLPTKEIAAMLPMDGFHLYRAQLDAMEDPKEAHAR 189
Query: 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213
RGAPWTFNP L L CL LR +GSVYAPSFDHGVGDPVE+DI V QHK+VIV+GNYL L
Sbjct: 190 RGAPWTFNPSLFLKCLHTLRTEGSVYAPSFDHGVGDPVENDIFVKPQHKIVIVEGNYLLL 249
Query: 214 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 273
+ VW ++ +FDEKWFI++D+D +MQRVLKRHI+TGK PDVA WRI YNDRPNAELI++
Sbjct: 250 EEDVWTEIRDLFDEKWFIDIDIDISMQRVLKRHIATGKEPDVAAWRISYNDRPNAELILE 309
Query: 274 SKKNADLVIKSIDI 287
S+KNADLVI+S+D
Sbjct: 310 SRKNADLVIRSVDF 323
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| TAIR|locus:2007544 | 301 | AT1G03030 [Arabidopsis thalian | 0.515 | 0.491 | 0.711 | 1.3e-86 | |
| ASPGD|ASPL0000074767 | 234 | AN4382 [Emericella nidulans (t | 0.484 | 0.594 | 0.363 | 3.1e-26 | |
| UNIPROTKB|G4MQ63 | 236 | MGG_02303 "Phosphoribulokinase | 0.432 | 0.525 | 0.411 | 6.4e-26 | |
| ASPGD|ASPL0000094429 | 583 | AN11942 [Emericella nidulans ( | 0.445 | 0.219 | 0.305 | 6.5e-24 | |
| CGD|CAL0002107 | 226 | orf19.7061 [Candida albicans ( | 0.637 | 0.809 | 0.314 | 7.8e-23 | |
| POMBASE|SPAC227.14 | 235 | SPAC227.14 "uridine kinase (pr | 0.616 | 0.753 | 0.333 | 7.8e-23 | |
| UNIPROTKB|P11664 | 237 | yggC "conserved protein with n | 0.707 | 0.856 | 0.284 | 2.3e-14 | |
| SGD|S000001903 | 353 | YFH7 "Putative kinase with sim | 0.313 | 0.254 | 0.288 | 8.3e-11 | |
| SGD|S000005295 | 501 | URK1 "Uridine/cytidine kinase" | 0.592 | 0.339 | 0.269 | 2e-05 | |
| UNIPROTKB|Q81NV2 | 223 | BAS2856 "Uncharacterized prote | 0.623 | 0.802 | 0.258 | 0.00015 |
| TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 106/149 (71%), Positives = 122/149 (81%)
Query: 140 SSFDS-QDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVG 198
S D+ +DPKEAHARRGAPWTF +GSVY PSFDHGVGDPVEDDI V
Sbjct: 153 SQLDAMEDPKEAHARRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVS 212
Query: 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKW 258
LQHKVVIV+GNY+ L+ G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKW
Sbjct: 213 LQHKVVIVEGNYILLEEGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKW 272
Query: 259 RIEYNDRPNAELIMKSKKNADLVIKSIDI 287
R++YNDRPNAELI+KSK NADL+I+S++I
Sbjct: 273 RVDYNDRPNAELIIKSKTNADLLIRSMNI 301
|
|
| ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 53/146 (36%), Positives = 79/146 (54%)
Query: 146 DPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVEDDILVGLQ 200
DP+ A ARRGA +TF +++APSFDH V DPV++DI +
Sbjct: 81 DPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDNDIPIAAA 140
Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA--KW 258
+V+ +GNYL L+ W + + DE WF++VD DTA QR++KRH+ G D A +
Sbjct: 141 RRVIFFEGNYLSLNKEPWSSAAKLMDELWFVDVDFDTARQRLVKRHVKAGIAKDEADAEK 200
Query: 259 RIEYNDRPNAELIMKSKKNADLVIKS 284
R + ND N I+ + + +I+S
Sbjct: 201 RADENDLVNGREIVDCRLDVQEIIRS 226
|
|
| UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 56/136 (41%), Positives = 73/136 (53%)
Query: 146 DPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQGSV--YAPSFDHGVGDPVEDDI 195
DP+ A RRGA +TF QG+V YAPSFDH V DPV D I
Sbjct: 85 DPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQGTVTIYAPSFDHAVKDPVADSI 144
Query: 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD- 254
+ + ++VI++GNYL LD WK +S+ DE WF VD + A +R+ KRH+ G PD
Sbjct: 145 PISPKMRIVIIEGNYLALDREPWKSAASLLDEIWFANVDREVARERLAKRHVEAGIVPDE 204
Query: 255 -VAKWRIEYNDRPNAE 269
A+ RI D NA+
Sbjct: 205 EAARERIRTTDFLNAD 220
|
|
| ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 44/144 (30%), Positives = 73/144 (50%)
Query: 144 SQDPKEAHARRGAPWTFX--------------XXXXXXXXXXXXXQGSVYAPSFDHGVGD 189
+++ EA+ RRGAPWTF G +YAP+F H D
Sbjct: 94 NKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSSSSEETAGVLYAPTFSHSTKD 153
Query: 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST 249
P+ + I++ +VI++GNYL LD W+D++ + D + F++VDL A +R+ +RH+
Sbjct: 154 PIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVDYRVFVDVDLAEARERLAQRHVEA 213
Query: 250 GKPPDVAKW--RIEYNDRPNAELI 271
G + + R++ ND N L+
Sbjct: 214 GIEQTLEEGFLRVDRNDAINGALV 237
|
|
| CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 62/197 (31%), Positives = 105/197 (53%)
Query: 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN---KIWPQKASSFD---SQ-----DPKEA 150
S+ ++++ LAG PG+GK+T A + +R++ K+ F S+ DPKEA
Sbjct: 29 SDSQPRYLISLAGVPGSGKTTFANAIAKRLSTFAKVVVLSQDGFHLYRSELTLMADPKEA 88
Query: 151 HARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209
RRGAP+TF + ++ APSFDH + DP+EDDI++ ++I++GN
Sbjct: 89 FRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDDIVIHGNVDIIIIEGN 148
Query: 210 YLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDV--AKWRIEYNDRPN 267
Y+ L W ++ + D+ WFI+ + +R++KRH++ G + A R + +D N
Sbjct: 149 YVSLRDKYWDEIENFVDDTWFIKTPENLVRERIIKRHLNAGIAANEKEAAERADGSDMQN 208
Query: 268 AELIMKSKKNADLVIKS 284
A I + K ++I S
Sbjct: 209 AHYIDGNSKPTKVLILS 225
|
|
| POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 65/195 (33%), Positives = 99/195 (50%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN--------KIWPQKASSFDSQD------PKEAHARR 154
++GLAG PG+GKSTL A + + N KI P + ++ P++A A R
Sbjct: 31 LIGLAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMDGFHYSLEELDRFDNPEKARALR 90
Query: 155 GAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
GA WTF +YAPSFDH +GDPV DDI V +++++I +GNYL
Sbjct: 91 GAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPKNRILIFEGNYLL 150
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAEL 270
L+ W D ++D K ++ V+ A RV RH+ +G + A R + ND N
Sbjct: 151 LNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEEEAIERTDRNDMINLTF 210
Query: 271 IMKSKKNADLVIKSI 285
+ K+ D+V++ +
Sbjct: 211 VEKNMVTPDIVLQQL 225
|
|
| UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 62/218 (28%), Positives = 97/218 (44%)
Query: 78 VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLA------AEVVR 129
++A+ +E + + + LL A VN + +V L PPG GKSTL A+
Sbjct: 12 IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTTFWEYLAQQDP 71
Query: 130 RINKIWPQKASSFDSQDP-KEAHARR---GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDH 185
+ I F + +AH R GAP TF +G P +D
Sbjct: 72 ELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQYDR 130
Query: 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKR 245
DPVED + V +VIV+GN+L LD W +++S D FI +R++ R
Sbjct: 131 QKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISR 188
Query: 246 HISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 283
I+ G VA+ D PN E ++ + + A+L+++
Sbjct: 189 KIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVE 226
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| SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFDEK----WFIE 232
++ P F+H + DP D + ++VI++G YL D WK + ++ D + I+
Sbjct: 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKID 296
Query: 233 VDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPN 267
+D + +RV KRH+ +G +A+ R ++ ND N
Sbjct: 297 IDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLN 333
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| SGD|S000005295 URK1 "Uridine/cytidine kinase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 52/193 (26%), Positives = 89/193 (46%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGA---PWTFXXXX 164
+I+G+ G G+GK+++AA++V IN W S + +P R A + F
Sbjct: 57 YIIGIGGASGSGKTSVAAKIVSSINVPWTVLISLDNFYNPLGPEDRARAFKNEYDFDEPN 116
Query: 165 XXXXXXXXX-----XQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216
+G ++ SF H P ++ ++ G VV+++G Y D
Sbjct: 117 AINLDLAYKCILNLKEGKRTNIPVYSFVHHNRVPDKNIVIYGAS--VVVIEGIYALYD-- 172
Query: 217 VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPD--VAKWRIEYNDRPNAELIMK 273
+ + + D K +++ DLD + R L R I S G+ D + +W E +PNA +K
Sbjct: 173 --RRLLDLMDLKIYVDADLDVCLARRLSRDIVSRGRDLDGCIQQW--EKFVKPNAVKFVK 228
Query: 274 -SKKNADLVIKSI 285
+ KNAD +I S+
Sbjct: 229 PTMKNADAIIPSM 241
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| UNIPROTKB|Q81NV2 BAS2856 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 52/201 (25%), Positives = 88/201 (43%)
Query: 104 VNVKHI--VGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQDPKEAHARRG---A 156
+NV H VG++G +GK+T A EV I K + +AS D +PK +G A
Sbjct: 17 LNVTHPTRVGVSGITASGKTTFANEVAEEIKKRGLPVTRASIDDFHNPKVIRYTQGKESA 76
Query: 157 PWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGD--PVEDDILVGLQHKVVIVDGN 209
+ + G++ + H + PV ++ L+ + V+IVDG
Sbjct: 77 RGYYEDAHDYTAFKERLLKPLGPNGNLQYETISHNLKTDIPVHNEPLMAQPNMVLIVDGT 136
Query: 210 YLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIE-YNDRPN 267
+L KDV+ +FD K F++ D + A +R KR G + K + Y+
Sbjct: 137 FLLK-----KDVAHLFDYKIFVDTDFEIARKRGAKRETEAFGSYEEAEKMFLSRYHAACK 191
Query: 268 AELIMKSKKN-ADLVIKSIDI 287
+ + K AD+V ++ D+
Sbjct: 192 MYIDEHNPKECADVVFRNSDL 212
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023843001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (312 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00014548001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (459 aa) | • | • | 0.415 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 287 | |||
| PRK09270 | 229 | PRK09270, PRK09270, nucleoside triphosphate hydrol | 3e-47 | |
| COG1072 | 283 | COG1072, CoaA, Panthothenate kinase [Coenzyme meta | 3e-32 | |
| COG0572 | 218 | COG0572, Udk, Uridine kinase [Nucleotide transport | 3e-16 | |
| TIGR00235 | 207 | TIGR00235, udk, uridine kinase | 5e-14 | |
| cd02023 | 198 | cd02023, UMPK, Uridine monophosphate kinase (UMPK, | 7e-13 | |
| pfam00485 | 197 | pfam00485, PRK, Phosphoribulokinase / Uridine kina | 1e-08 | |
| PRK06696 | 223 | PRK06696, PRK06696, uridine kinase; Validated | 3e-07 | |
| PRK05480 | 209 | PRK05480, PRK05480, uridine/cytidine kinase; Provi | 8e-07 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 9e-07 | |
| pfam13238 | 128 | pfam13238, AAA_18, AAA domain | 1e-05 | |
| COG4240 | 300 | COG4240, COG4240, Predicted kinase [General functi | 8e-05 | |
| PRK08233 | 182 | PRK08233, PRK08233, hypothetical protein; Provisio | 1e-04 | |
| cd02024 | 187 | cd02024, NRK1, Nicotinamide riboside kinase (NRK) | 3e-04 | |
| COG1703 | 323 | COG1703, ArgK, Putative periplasmic protein kinase | 4e-04 | |
| cd02025 | 220 | cd02025, PanK, Pantothenate kinase (PanK) catalyze | 6e-04 | |
| cd02028 | 179 | cd02028, UMPK_like, Uridine monophosphate kinase_l | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.002 |
| >gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 3e-47
Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 19/220 (8%)
Query: 78 VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
V+A+ DE +A+ + LL +AL + + IVG+AGPPGAGKSTLA + +
Sbjct: 3 VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ---- 58
Query: 137 QKASSFDSQDPK----------EAH---ARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPS 182
Q Q P +AH R+GAP TF+ L L+ LR VY P
Sbjct: 59 QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLRAGDDEVYWPV 118
Query: 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 242
FD + DPV D I+V ++VIV+GNYL LD W+ ++ +FD F++ + +R+
Sbjct: 119 FDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERL 178
Query: 243 LKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 282
+ R ++ G P+ A+ + ND PNA L++++ + ADLV+
Sbjct: 179 VARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVL 218
|
Length = 229 |
| >gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-32
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQ--DP 147
L +N I+G+AG GKST A +++ + WP+ + + D
Sbjct: 74 LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPESPKVDLVTMDGFHYPNAVLDE 132
Query: 148 KEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIV 206
+ AR+G P +++ LL L +++ V+AP + H + DPV D V Q ++IV
Sbjct: 133 RGLMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIV 192
Query: 207 DGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRP 266
+GN + DG W +S FD +++ D + +R ++R + G +N P
Sbjct: 193 EGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGLTAFEDPASYFHNYAP 252
Query: 267 NAELIMKSKKNADLVI 282
+E A
Sbjct: 253 LSEREAIESARAIWDN 268
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Length = 283 |
| >gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-16
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 18/185 (9%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SF---DSQDPKE--AHARRGAPWTFN 161
I+G+AG G+GK+T+A E+ ++ S + S P E P F+
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFD 69
Query: 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
LL+ LK+L+ V P +D+ + I V VVIV+G L D + +
Sbjct: 70 LDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND-VVIVEGILLLYD----ERL 124
Query: 222 SSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPD--VAKWRIEYNDRPNAEL-IMKSKKN 277
+ D K F++ D D + R +KR + G+ + + ++ RP E I +KK
Sbjct: 125 RDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTV--RPMYEQFIEPTKKY 182
Query: 278 ADLVI 282
AD++I
Sbjct: 183 ADIII 187
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Length = 218 |
| >gnl|CDD|232890 TIGR00235, udk, uridine kinase | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-14
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW----PQKASSFDSQDPKEAHARRGA-----PWT 159
I+G+ G G+GK+T+A ++ ++ K+ Q + + Q E A R P
Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQD-NYYKDQSHLE-MAERKKTNFDHPDA 65
Query: 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219
F+ LL LKNL+N + P +D+ ++ + + VVI++G D +
Sbjct: 66 FDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE-PKDVVILEGIMPLFD----E 120
Query: 220 DVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--VAKWRIEYNDRPNAE-LIMKSK 275
+ + D K F++ LD + R ++R I+ G+ D + ++R RP E + +K
Sbjct: 121 RLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTV--RPMYEQFVEPTK 178
Query: 276 KNADLVI 282
+ ADL+I
Sbjct: 179 QYADLII 185
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Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207 |
| >gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-13
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW----PQKASSFDSQDPKEAHARRGA----PWTF 160
I+G+AG G+GK+T+A E++ ++ Q S + +E R+ P F
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQD-SYYKDLSHEELEERKNNNYDHPDAF 59
Query: 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 220
+ LL++ L++L+N SV P +D +++ + V V+I++G D K+
Sbjct: 60 DFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETVTVY-PADVIILEGILALYD----KE 114
Query: 221 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIE-YND--RPNAE-LIMKSKK 276
+ + D K F++ D D + R ++R I + I Y +P E I +K+
Sbjct: 115 LRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESV--INQYLKFVKPMHEQFIEPTKR 172
Query: 277 NADLVI 282
AD++I
Sbjct: 173 YADVII 178
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198 |
| >gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 28/198 (14%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-------SFDS-QDPKEAHARRGA---- 156
I+G+ G GAGK+T+A V + A +D R+ A
Sbjct: 1 IIGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKRAGNNH 60
Query: 157 -----PWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGN 209
P + LL K L+ GS P + G DP +++ G ++ +G
Sbjct: 61 YSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPELIEG--ADILFYEG- 117
Query: 210 YLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIEYNDRPNA 268
L G + V+ + D K ++ D++ + ++R ++ G + I +P+
Sbjct: 118 ---LHGLYDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERGHSLEAVTDSILRR-KPDY 173
Query: 269 E-LIMKSKKNADLVIKSI 285
I DL + +
Sbjct: 174 VNYICPQFSYTDLNFQRV 191
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In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197 |
| >gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQDPKEAHARRG---APWTFN--- 161
V + G +GK+T A E+ I K +AS D +P+ RRG A +
Sbjct: 25 VAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAY 84
Query: 162 --PLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217
L L L G S D PV + L+ + V+IVDG +L
Sbjct: 85 DYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRP--- 141
Query: 218 WKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIEYNDR--PNAELIMKS 274
++ ++D K F++ D + + +R KR G + K Y R P +L +
Sbjct: 142 --ELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEK---MYLARYHPAQKLYIAE 196
Query: 275 ---KKNADLVIKSIDI 287
K+ AD+VI + D
Sbjct: 197 ANPKERADVVIDNSDP 212
|
Length = 223 |
| >gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 8e-07
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINK----IWPQKASSFD-SQDPKEAHARRGA-----P 157
I+G+AG G+GK+T+A+ + + + PQ + D S E R P
Sbjct: 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEE---RVKTNYDHP 63
Query: 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217
F+ LL+ LK L+ ++ P +D+ ++ I V V+I++G L D
Sbjct: 64 DAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE-PKDVIILEGILLLED--- 119
Query: 218 WKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--VAKWRIEYNDRP-NAELIMK 273
+ + + D K F++ LD + R LKR ++ G+ + + ++ RP + + I
Sbjct: 120 -ERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTV--RPMHLQFIEP 176
Query: 274 SKKNADLVI 282
SK+ AD++I
Sbjct: 177 SKRYADIII 185
|
Length = 209 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 9e-07
Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 27/141 (19%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNC 168
I+ + GPPG+GKSTLA ++ ++ D L+
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLG------IPVISLDDLLREEG-----LAELDDGELDD 49
Query: 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228
+ + ++IL L + ++DG ++ +
Sbjct: 50 IDIDLE----------------LLEEILDELAKQEWVIDGVRESTLELRLEEADLVVFLD 93
Query: 229 WFIEVDLDTAMQRVLKRHIST 249
+ ++R L+R
Sbjct: 94 LPLPACRFRLLKRRLQRGRGE 114
|
Length = 114 |
| >gnl|CDD|222000 pfam13238, AAA_18, AAA domain | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 31/148 (20%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCL 169
+ + G PG+GK+TLA E+ R+ + ++ G + +
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGDVL------------RDLAKENGLVLELDEEITDESK 48
Query: 170 KNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG---NYLFLDGGVWKDVSSMFD 226
+ + + D +E I + + VI+DG V
Sbjct: 49 RLDED--------KLAKLLDKLEKIIEELAEGENVIIDGHLAELELERFKDLVFV----- 95
Query: 227 EKWFIEVDLDTAMQRVLKRHISTGKPPD 254
+ D + ++R+ KR S K +
Sbjct: 96 ---VLRADPEELLERLKKRGYSEEKISE 120
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Length = 128 |
| >gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-05
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR--------------R 154
IVG++GP G+GKSTL+A +VR + ++ ++ D HA R
Sbjct: 52 IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTR 111
Query: 155 GAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDDILVGLQHKVVIVDG 208
G P T +P L LN L + G V P FD G GD + + +VI++G
Sbjct: 112 GLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEG 170
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Length = 300 |
| >gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 32/181 (17%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLN 167
I+ +A G GK+TL + ++ KA FD D
Sbjct: 4 KIITIAAVSGGGKTTLTERLTHKLKN---SKALYFDRYDFDNCPED-------------- 46
Query: 168 CLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSM 224
+ ++G+ Y V P+ DI Q + + +Y+ +D + ++
Sbjct: 47 -ICKWIDKGANY----SEWVLTPLIKDI----QELIAKSNVDYIIVDYPFAYLNSEMRQF 97
Query: 225 FDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPN-AELIMKSKKNADLV 281
D FI+ LD AM R + R ++ Y RP E + K NAD+V
Sbjct: 98 IDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIV 157
Query: 282 I 282
+
Sbjct: 158 L 158
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Length = 182 |
| >gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 34/157 (21%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD---PKEA---HARRG-----AP 157
IVG++G +GK+TLA + + +I P QD E G
Sbjct: 1 IVGISGVTNSGKTTLA----KLLQRILPN--CCVIHQDDFFKPEDEIPVDENGFKQWDVL 54
Query: 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV-------------EDDILVGLQHKVV 204
+ +++ L R G HG + + D+L ++
Sbjct: 55 EALDMEAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHIL 114
Query: 205 IVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 241
IVDG L+ K + +FD ++F+ V +T +R
Sbjct: 115 IVDGFLLYNY----KPLVDLFDIRYFLRVPYETCKRR 147
|
This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187 |
| >gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
R I +VE+R D ALA+ LL AL H++G+ G PGAGKSTL + R
Sbjct: 21 RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74
|
Length = 323 |
| >gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 50/219 (22%), Positives = 86/219 (39%), Gaps = 55/219 (25%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----SFDS-----QDPKEAH--ARRGAP 157
I+G+AG GKST A V++ + WP + + D ++ E R+G P
Sbjct: 1 IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFP 59
Query: 158 WTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG-NYL---- 211
+++ LL LK++++ V P + H D + + Q ++I++G N L
Sbjct: 60 ESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQ 119
Query: 212 --------FLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK------------RHISTGK 251
F D ++ D EKW+I+ R LK H
Sbjct: 120 NPRLFVSDFFDFSIYVDADEDDIEKWYIK--------RFLKLRETAFSDPDSYFHRYAKM 171
Query: 252 PPDVAK------WRIEYNDRPN-AELIMKSKKNADLVIK 283
+ A W+ N N E I+ ++ ADL+++
Sbjct: 172 SEEEAIAFAREVWK-NIN-LKNLRENILPTRNRADLILE 208
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220 |
| >gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFN----- 161
+VG+AGP G+GK+T A + R+N I P S D R ++
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYY-VPRKTPRDEDGNYDFESIL 58
Query: 162 --PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210
LL N L +L N V P +D G L VVI++G Y
Sbjct: 59 DLDLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIY 108
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.002
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
++ + GPPG+GK+TLA + R +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGP 28
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 89 ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
A++ RL P SA V I+ L GP GAGKSTL A
Sbjct: 7 AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40
|
Length = 248 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.98 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.98 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.98 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.97 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.97 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.97 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.97 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.97 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.97 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.97 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.96 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.96 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.96 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.96 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.96 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.96 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.96 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.96 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.96 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.96 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.96 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.96 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.96 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.96 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.96 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.96 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.96 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.96 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.95 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.95 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.95 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.95 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.95 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.95 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.95 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.95 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.95 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.95 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.95 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.95 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.95 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.95 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.95 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.95 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.95 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.95 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.95 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.95 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.95 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.95 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.95 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.95 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.95 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.95 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.95 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.95 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.95 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.95 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.95 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.95 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.95 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.95 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.95 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.95 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.95 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.95 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.94 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.94 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.94 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.94 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.94 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.94 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.94 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.94 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.94 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.94 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.94 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.94 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.94 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.94 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.94 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.94 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.94 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.94 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.94 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.94 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.94 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.94 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.94 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.94 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.94 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.94 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.94 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.94 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.94 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.94 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.94 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.94 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.94 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.94 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.94 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.94 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.94 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.94 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.94 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.94 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.94 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.94 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.94 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.94 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.94 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.94 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.94 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.94 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.94 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.94 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.94 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.94 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.94 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.94 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.94 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.94 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.94 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.94 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.94 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.94 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.94 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.93 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.93 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.93 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.93 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.93 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.93 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.93 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.93 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.93 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.93 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.93 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.93 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.93 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.93 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.93 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.93 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.93 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.93 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.93 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.93 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.93 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.93 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.93 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.93 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.93 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.93 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.93 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.93 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.93 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.93 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.93 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.93 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.93 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.93 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.93 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.93 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.93 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.93 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.93 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.93 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.93 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.93 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.93 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.92 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.92 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.92 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.92 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.92 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.92 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.92 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.92 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.92 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.92 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.92 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.92 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.92 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.92 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.92 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.92 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.92 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.92 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.92 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.92 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.92 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.92 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.92 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.92 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.92 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.92 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.92 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.92 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.92 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.92 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.92 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.92 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.92 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.92 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.92 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.91 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.91 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.91 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.91 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.91 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.91 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.91 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.91 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.91 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.91 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.91 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.91 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.91 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.91 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.91 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.91 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.91 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.91 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.91 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.91 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.91 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.91 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.91 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.91 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.91 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.9 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.9 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.9 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.9 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.9 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.9 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.9 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.9 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.9 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.9 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.9 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.9 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.9 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.9 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.9 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.9 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.9 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.9 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.89 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.89 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.89 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.89 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.89 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.89 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.89 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.89 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.89 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.89 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.89 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.89 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.89 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.88 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.88 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.88 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.88 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.88 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.88 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.87 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.87 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.87 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.86 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.86 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.86 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.86 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.86 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.86 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.86 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.85 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.84 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.84 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.83 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.83 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.83 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.83 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.82 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.82 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.82 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.81 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.81 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.81 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.81 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.8 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.78 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.77 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.77 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.77 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 99.77 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 99.76 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 99.74 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.74 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.74 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.73 | |
| KOG2702 | 323 | consensus Predicted panthothenate kinase/uridine k | 99.73 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.72 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 99.72 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 99.71 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.71 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 99.68 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.66 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 99.65 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.64 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 99.64 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 99.63 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.62 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.61 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.61 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.6 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 99.58 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.58 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.57 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.57 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.56 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.56 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.55 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.55 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.54 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.53 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.5 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 99.49 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.48 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.47 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.47 | |
| COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 99.46 | |
| PLN02348 | 395 | phosphoribulokinase | 99.45 | |
| PRK07429 | 327 | phosphoribulokinase; Provisional | 99.42 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.42 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.37 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.37 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.36 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.36 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.33 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.33 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 99.33 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.32 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 99.32 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.31 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.29 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.27 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 99.25 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.25 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.22 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.15 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.15 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.14 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.12 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.11 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.06 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.04 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.03 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.02 | |
| PRK06696 | 223 | uridine kinase; Validated | 99.01 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.01 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.98 | |
| cd02024 | 187 | NRK1 Nicotinamide riboside kinase (NRK) is an enzy | 98.97 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.96 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 98.95 | |
| PRK07667 | 193 | uridine kinase; Provisional | 98.91 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.86 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.84 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.83 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.75 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.73 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 98.73 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.7 | |
| PLN03046 | 460 | D-glycerate 3-kinase; Provisional | 98.7 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.61 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.6 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.57 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.51 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.51 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.49 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.46 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.41 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.4 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.38 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.37 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.35 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.33 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.32 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.31 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.31 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.28 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 98.27 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.24 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.21 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.2 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.17 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 98.17 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.15 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.14 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.14 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 98.13 | |
| PRK14731 | 208 | coaE dephospho-CoA kinase; Provisional | 98.13 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.09 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.09 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.09 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.08 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.08 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.08 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 98.06 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 98.06 | |
| COG4240 | 300 | Predicted kinase [General function prediction only | 98.05 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 98.05 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.04 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.04 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 98.04 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.01 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.0 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.99 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 97.98 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.97 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.96 | |
| PRK06936 | 439 | type III secretion system ATPase; Provisional | 97.94 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.91 | |
| PRK06820 | 440 | type III secretion system ATPase; Validated | 97.91 | |
| PRK13477 | 512 | bifunctional pantoate ligase/cytidylate kinase; Pr | 97.89 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 97.89 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 97.88 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=270.79 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=142.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~~ 151 (287)
+|+++||+|+||+.. +|++||++|.+||+++|+||||||||||+|||+++.. |++| |.++|.++. ...
T Consensus 2 mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 2 MIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILK 74 (240)
T ss_pred eEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHH
Confidence 699999999999887 9999999999999999999999999999999999999 9999 999996542 223
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceeecc--C--------------CccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--F--------------DHGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--~--------------~~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.++.++++||.+++ +|+++|+.++...-... - -.+..+.||.+|||||||||+| .+
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 44556777777665 89999998864321100 0 0123478999999999999999 99
Q ss_pred CCEEeEec-----------chHHHHHhccCCe---EEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~~---i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+++|+|| ++++.+.++.+++ ++|||+|.++.+ |++ |+++++|+|+++.
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999 6777788887764 699999999987 666 7788889888874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=284.37 Aligned_cols=175 Identities=20% Similarity=0.328 Sum_probs=145.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
++.|+++||+|.|++.. +++|+||+|++||+++|+||||||||||||+|+|+.. |++| |.++|+++... ..
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 45799999999999776 9999999999999999999999999999999999999 9999 99999987554 34
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeeccCC----------------ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD----------------HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~----------------~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+++++++||.+.+ +||.+|++|+..+....-. ....+++|.+|||||||||+| .+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 5678889998775 8999999999873321111 124579999999999999999 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++||||| ++..+++++.. ..||||||.++++. |++ |++...|+|+++.
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh
Confidence 9999999 33334444333 24799999999998 666 8888899999984
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=260.48 Aligned_cols=156 Identities=19% Similarity=0.304 Sum_probs=126.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
.+++++++++.|++.. +|+|+||+|.+||+++|+||||||||||+|+|+|++. |++| +.++|..+. ....
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~--~p~~ 72 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVT--GPGP 72 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccC--CCCC
Confidence 4699999999999865 9999999999999999999999999999999999999 9999 999998762 2223
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee-ccCC--------------ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA-PSFD--------------HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~~~--------------~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.++||.+.+ .|+++|+.++..... .... .+..+++|++|||||||||+| .+|++|
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred CEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 35677777654 899999999866542 1100 124589999999999999999 999999
Q ss_pred eEec-----------chHHHHHhcc----CCeEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
|||| .+.+++.++. ..++|||||.+++..
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 9999 2333333333 346799999999976
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=260.61 Aligned_cols=174 Identities=20% Similarity=0.329 Sum_probs=138.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
||+++||+|.|+++. +++|+||+|++|++++++|||||||||+||||.+++. |++| |.++|+++.. ...
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999877 9999999999999999999999999999999999999 9999 9999987643 233
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec----------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP----------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~----------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
++.++|+.|...+ +|+.+|+..-..+... ..+ ....+|+|++|||||+|||-+ .+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 4556666665443 8999999875433210 111 125589999999999999987 89
Q ss_pred CCEEeEec--------------chHHHHHhccCC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG--------------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE--------------~~~~~l~~~~~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|+++|+|| +.+..|.+.+.. .||||||++++.. |++ |+++..++|+++..
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999 223333333333 5799999999998 655 88888999988753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=264.34 Aligned_cols=173 Identities=22% Similarity=0.358 Sum_probs=143.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC---CHHH-Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ---DPKE-AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~---~~~~-~~ 151 (287)
+|.+++++|.|+... +++|||++|+.||.+|++|||||||||||++|+|++. |+.| |.++|+ +... ..
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 589999999999987 9999999999999999999999999999999999999 9999 999998 5544 23
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC-----------------ccCCCCCCCceeccccceEEE-----e
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
+.+.++++||.+.+ +||.+||+|+........+ ....+++|.+|||||+|||+| .
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 44568899998876 8999999999866522221 124589999999999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| ++...|+++.+. ++|||||.+++.+ |++ |++...|++.++.
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999 233333333332 5799999999998 655 8888889998883
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=274.74 Aligned_cols=176 Identities=17% Similarity=0.278 Sum_probs=145.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.||+.. +|+++||+|+.||+++|+||||||||||||+|+|++. |++| |.++|.++... ..
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56799999999999865 7999999999999999999999999999999999999 9999 99999987663 45
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.+++.++||.+.+ +||++|+.|+........+ ....+++|.+|||||||||+| .+|+
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 6778899998775 8999999998776432111 123478999999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++|+|| .+..++.++.+ ..|+||||..+++. |++ |++...|+|.++..
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999 22333333322 35899999999998 554 88888999998853
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=261.56 Aligned_cols=185 Identities=19% Similarity=0.223 Sum_probs=148.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
+++++||+++|+++. +|+|+||++++|++++|+||||||||||+|+|+|+++ |.+| |.++|+++... ..
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 689999999999877 9999999999999999999999999999999999999 9999 99999987542 12
Q ss_pred hCCC---CCCCChhHHHHHHHHHhcCCceeeccCC---c----------------cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGA---PWTFNPLLLLNCLKNLRNQGSVYAPSFD---H----------------GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~---~~~~~~~~~~tv~e~l~~~~~~~~~~~~---~----------------~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+.+ |+.+.....++|+|-+.++...+...|. . ...++...+|||||||||.|
T Consensus 75 Ak~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa 154 (258)
T COG1120 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA 154 (258)
T ss_pred hhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh
Confidence 2223 4443333448999999988665433332 1 13378899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHHHhc
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEYN 263 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~~~~ 263 (287)
++|++||||| ++++.++++.++ +|+|.||++.+.+ +++ |++++.|.|++++.....+.
T Consensus 155 Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~ 234 (258)
T COG1120 155 QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLRE 234 (258)
T ss_pred cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHH
Confidence 9999999999 677788877733 5799999999998 555 89999999999877665555
Q ss_pred Cccch
Q 023106 264 DRPNA 268 (287)
Q Consensus 264 ~~~~~ 268 (287)
++...
T Consensus 235 Vygv~ 239 (258)
T COG1120 235 VYGVD 239 (258)
T ss_pred HhCCc
Confidence 44444
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=260.08 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=142.6
Q ss_pred EEEecCchhhhhhh-hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~-~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||++++|+|.|... .....+|+||||+|++|+|+||||.||||||||+|+|.++.. |++| +.++|.++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 58999999999872 223459999999999999999999999999999999999999 9999 9999976522
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...++.+++.||.+++ .||++|++++..+...... .+..+++|.+|||||||||.|
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 2345668888888876 7999999998776532111 124578999999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhc---cCC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSM---FDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~---~~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||+|| .+++.|.+. +.. .++|||.|+.+.+ |+. |++++.|+..++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 8999999999 344444444 333 3699999999987 655 8889999887763
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=257.98 Aligned_cols=177 Identities=19% Similarity=0.296 Sum_probs=140.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
|++|+++|+++.|++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |.+| +.+.|.+.......
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 46899999999998655 9999999999999999999999999999999999999 9999 89999876544322
Q ss_pred CCCCCCCCh-----hHHHHHHHHHhcCCceeeccCCc-------------------cCCCCCCCceeccccceEEE----
Q 023106 154 RGAPWTFNP-----LLLLNCLKNLRNQGSVYAPSFDH-------------------GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 154 ~~~~~~~~~-----~~~~tv~e~l~~~~~~~~~~~~~-------------------~~~~~~~~~LSgGekqRv~I---- 205 (287)
..++|++|. ....||.|.+.++.......|.. ...++.+.+|||||+|||.|
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 224444442 22389999999875443222211 23478999999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH---HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~~~ 258 (287)
.+|++|+||| .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++...
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~ 228 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTE 228 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccCH
Confidence 9999999999 455555555553 4699999999998 555 777889999998664
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=252.53 Aligned_cols=176 Identities=21% Similarity=0.346 Sum_probs=142.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
.++|++++|+++||++. +++|+||+|++|++++|+||||||||||+|+|.|+++ |++| |.++|.++...
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 34799999999999988 9999999999999999999999999999999999999 9999 99999986432
Q ss_pred ---hhhCCCCCCCChhHH---HHHHHHHhcCCceeec-----------------cCCccCCCCCCCceeccccceEEE--
Q 023106 151 ---HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP-----------------SFDHGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 151 ---~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~-----------------~~~~~~~~~~~~~LSgGekqRv~I-- 205 (287)
..+..++..||...+ ++|+||+.+...-+.. .......+++|.+|||||++|++|
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 224446778887654 8999999986442211 112223578999999999999999
Q ss_pred ---ecCCEEeEec--------------chHHHHHhccCC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG--------------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE--------------~~~~~l~~~~~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++++|| +++..|++.+.. .++||||++.+.. |++ |++++.|+++++..
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999 344444444443 4799999999987 544 78889999999853
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=246.29 Aligned_cols=182 Identities=20% Similarity=0.278 Sum_probs=144.3
Q ss_pred cEEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
.+|+++||++.| ++.. +|+||||+|++||+|+|||+||||||||||+|+|+.. |++| +.++|.++..
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 5555 9999999999999999999999999999999999999 9999 8999976532
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec-------cCCcc----------------CCCCCCCceeccccc
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP-------SFDHG----------------VGDPVEDDILVGLQH 201 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~-------~~~~~----------------~~~~~~~~LSgGekq 201 (287)
...+..+++.||.+++ +++++|+..+..-+.+ .|... .....+++|||||||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ 154 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence 2234557888888776 8999999887543322 12111 124578999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
||+| ++|+++|.|| .+++.|++.... +|+..|+++.+.+ |++ |+++++|++.+
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 9999 9999999999 456666655432 3577799999998 887 89999999988
Q ss_pred HHHHHHHhcC
Q 023106 255 VAKWRIEYND 264 (287)
Q Consensus 255 ~~~~~~~~~~ 264 (287)
+....+...+
T Consensus 235 l~~~~~~~iY 244 (258)
T COG3638 235 LTDEALDEIY 244 (258)
T ss_pred hhHHHHHHHh
Confidence 7666555433
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=249.77 Aligned_cols=161 Identities=18% Similarity=0.265 Sum_probs=128.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------- 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------- 148 (287)
+++++||+|.|+.......+|+++||+|++||+++|+|||||||||||++|.|+.. |++| +.++|.++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999765334569999999999999999999999999999999999999 9999 789997542
Q ss_pred HHhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc----------------CCccCCCCCCCceeccccceEEE----
Q 023106 149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS----------------FDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~----------------~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
...++..++++||.+.+ +|+.||+.++..+.... ......+++|.+|||||||||+|
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence 12445568889988775 89999999643322111 11122347899999999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
.+|+++|+|| .+++.+.++.+. +|+||||.+.+..
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 9999999999 566677666443 4799999999976
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-34 Score=245.00 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=137.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
|++|+++||++.|+......++|++|||+|.+||++||+|+||||||||+++|+|+.+ |++| |.++|......
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 4589999999999876545569999999999999999999999999999999999999 9999 99999754322
Q ss_pred -hhhCCCCCCCChhH-----HHHHHHHHhcCCceee--------------ccCCccCCCCCCCceeccccceEEE-----
Q 023106 151 -HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA--------------PSFDHGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 -~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~--------------~~~~~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+...+.++||++. ..++.+.|..+..... ........+++|++|||||+|||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 12233556666543 2667666665544311 0112234478999999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+|+.+.++.+. .+|||||+..+.. |++ |++++.++..++.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 8999999999 556666555443 3699999999987 554 7777777777764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-34 Score=235.88 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=127.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
||+++||+|.|++.. ++|+||||+|++||++.|+||||||||||+|+|.+... |+.| +.++|+++...
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999997653 39999999999999999999999999999999999999 9999 99999976432
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..++.++.+||++.+ .|++||+++...+....-. .......|.+|||||||||+| .
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 335557788888876 7999999998765422111 123356899999999999999 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|.+||+|| ++++.+.++.. .+++.|||.+++.+
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 999999999 33444444332 35799999999988
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-34 Score=246.87 Aligned_cols=175 Identities=27% Similarity=0.407 Sum_probs=144.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
+++++++|+|+||+.. +++||||++.+|+++|||||||||||||+++|+|.++ |++| +.++|+++. ..
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 4799999999999988 9999999999999999999999999999999999999 9999 999999753 34
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCce--------eeccCCc-------------------cCCCCCCCceecccc
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSV--------YAPSFDH-------------------GVGDPVEDDILVGLQ 200 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~--------~~~~~~~-------------------~~~~~~~~~LSgGek 200 (287)
..+.|+.-.||...+ +|++||+..+... ..+.+.. ...+..+.+||+|+|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 557788888887654 8999999876331 1122210 134788999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
+|+.| .+|.+|+||| ++.+.|+++.+. .++|.|||+.++. |++ |+++++|+|+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 99988 8999999999 556666666542 3599999999998 544 9999999999
Q ss_pred HHHH
Q 023106 254 DVAK 257 (287)
Q Consensus 254 ~~~~ 257 (287)
++..
T Consensus 236 eV~~ 239 (250)
T COG0411 236 EVRN 239 (250)
T ss_pred HHhc
Confidence 9854
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-32 Score=240.25 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=142.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
++++++++++.|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++ |++| +.++|.+.. ..
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 479999999999775 229999999999999999999999999999999999999 9999 889998754 22
Q ss_pred hhhCCCCCCCChhHH----HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLLL----LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~----~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..++.++++||++.. .||.+.++|+......... ....++.+..|||||||||+| .
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc
Confidence 334456677776542 6899999987543211110 123478999999999999999 9
Q ss_pred cCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
+|++||||| .+++.+.++... .|++|||++.+.. |++ |+++.+|+|.++..+.
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999 566666666544 5799999999998 544 8888999998887653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=241.13 Aligned_cols=179 Identities=21% Similarity=0.313 Sum_probs=141.7
Q ss_pred cEEEecCchhhhhhhhh--------------------ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccC
Q 023106 76 PVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~--------------------~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~ 135 (287)
..|+++||+|-||.... -+.-++|+||+|+.|||..|+|-||||||||+++|.++..
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 35889999998875431 1335789999999999999999999999999999999999
Q ss_pred CCcc-eeeCCCCHHH-----H--hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCC
Q 023106 136 PQKA-SSFDSQDPKE-----A--HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGD 189 (287)
Q Consensus 136 p~~G-i~~~g~~~~~-----~--~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~ 189 (287)
|++| +.++|.++.. . .++..+.++||.+.+ .||++|+.|+..+...... .+..+
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh
Confidence 9999 9999997632 1 234457788887765 8999999999876532211 12457
Q ss_pred CCCCceeccccceEEE-----ecCCEEeEec---------------chHHHHHhccCCeEEEEcChHHHHH---HHH---
Q 023106 190 PVEDDILVGLQHKVVI-----VDGNYLFLDG---------------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL--- 243 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I-----~~p~lLllDE---------------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi--- 243 (287)
++|++|||||||||-| .+|++||+|| +++++-.++.+.+||||||++++.+ |+.
T Consensus 160 ~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimk 239 (386)
T COG4175 160 KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMK 239 (386)
T ss_pred cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEec
Confidence 8999999999999988 8999999999 2233333334456799999999998 655
Q ss_pred -HHHhcCCCcHHHHH
Q 023106 244 -KRHISTGKPPDVAK 257 (287)
Q Consensus 244 -gr~i~~G~~~~~~~ 257 (287)
|+++..|+|++++.
T Consensus 240 dG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 240 DGEIVQVGTPEEILL 254 (386)
T ss_pred CCeEEEeCCHHHHHc
Confidence 89999999999864
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=226.65 Aligned_cols=177 Identities=17% Similarity=0.227 Sum_probs=135.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---Ccc-eeeCCCCHHH-
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKA-SSFDSQDPKE- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p---~~G-i~~~g~~~~~- 149 (287)
++.++++||++.||++. +|+|||++|+++.++|||||+|||||||||++..+.. +.| ..| +.++|+++..
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCcCceEEEEEEECCeeccCC
Confidence 34799999999999887 9999999999999999999999999999999998865 222 247 8889986532
Q ss_pred ----HhhhCCCCCCCChhH--HHHHHHHHhcCCceeeccC-----------------C--ccCCCCCCCceeccccceEE
Q 023106 150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYAPSF-----------------D--HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~~~-----------------~--~~~~~~~~~~LSgGekqRv~ 204 (287)
...++.++++||.++ .++++||+.++.+++...- + .+..++.+..||||||||++
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 223334556666544 4999999999876653221 1 01225678889999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+-+.|.++.+. +|+|||+|..+.+ +.. |++++.|+++++.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9 8999999999 233444454443 4699999999987 322 8999999988874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=255.24 Aligned_cols=176 Identities=18% Similarity=0.256 Sum_probs=137.1
Q ss_pred ccEEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-h
Q 023106 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-H 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~ 151 (287)
|.+|+++||++.| ++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... .
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 6655 8999999999999999999999999999999999999 9999 99999865321 1
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+++++++||.+.+ +++.+|+.++..... .. +. ....++++.+|||||||||+| .+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 23456777776544 699999988643211 00 00 123478899999999999998 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++||||| .+++.|.++.+ ..|+||||.+++.. |++ |++++.|+++++..
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 9999999 34555555433 25799999999876 444 78888999888743
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-32 Score=226.99 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=137.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~ 151 (287)
||++.+++|+|+...+ +++||||++++|+++||+|||||||||+||+|++++. |++| ++++|.+... .+
T Consensus 1 Ml~v~~l~K~y~~~v~---AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKVQ---AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHHh---hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 5899999999998653 8999999999999999999999999999999999999 9999 9999987532 23
Q ss_pred hhCCCCC-CCChhHHHHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 152 ARRGAPW-TFNPLLLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 152 ~~~~~~~-~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+..|+.. ....+.-+|+.|||.+...++...-. ....++.+..+|-||||||.| ++|.+
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 3334322 11223338999999987665422111 012367889999999999988 99999
Q ss_pred EeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~ 260 (287)
+++|| .+.+.+.++... ++|.||+|+++.. |++ |.++..|+++++.....
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 99999 344445554442 5799999999986 655 88999999998866543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-32 Score=255.07 Aligned_cols=176 Identities=17% Similarity=0.247 Sum_probs=138.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||++.|++.. +|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|+++... ..
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998765 8999999999999999999999999999999999999 9999 99999765321 22
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++++.++||.+.+ +++.+|+.++...... .+. ....++++.+|||||||||+| .+|+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456777776554 6999999876432110 000 123468999999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++|||| .+++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 44555555433 25799999999876 554 88888999888754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-32 Score=254.13 Aligned_cols=175 Identities=19% Similarity=0.295 Sum_probs=137.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 4 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred CcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 66899999999998755 8999999999999999999999999999999999999 9999 89999765322 22
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+++++++||.+.+ +++.+|+.++....... +. ....++++.+|||||||||+| .+|+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3456677776543 69999999864321100 00 123478899999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+.+.|.++.. ..|+||||.+++.. |++ |+++..|+++++.
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999 34445554433 25799999999876 554 8888889988874
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-32 Score=228.14 Aligned_cols=178 Identities=19% Similarity=0.307 Sum_probs=142.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.++.++||.|+|+.+. ++++|||+|.+||+|||+|||||||||.+.++.|+.+ |++| +.++|.++..
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 55799999999999887 9999999999999999999999999999999999999 9999 9999998643
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc-C---------------C-ccCCCCCCCceeccccceEEE----
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS-F---------------D-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~---------------~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.+.+.|+++.+|.... ++|.+|+.......... . . ....+.+...||||||+|+.|
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH
Confidence 4567888888887765 79999987654432211 0 0 013367888999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eE-EEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KW-FIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i-~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
.+|.++|||| ++.+.+..+.+. +| +.+|+..+... |.. |+++++|+|++++..-
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 8999999999 344444555443 34 66699988877 433 8999999999987653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-32 Score=251.01 Aligned_cols=177 Identities=20% Similarity=0.261 Sum_probs=134.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
||+++||+|.|++......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999632111238999999999999999999999999999999999999 9999 9999986532
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----e
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
...+..+++.||...+ .|+.+|+.++..... +. +. ....++++.+|||||||||+| .
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 1224456666766443 689999987532211 00 00 123468899999999999999 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|+++.+ .+|++|||++.+.+ |++ |++++.|++.++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999 45666666543 24699999999976 554 8888889888774
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-31 Score=228.13 Aligned_cols=175 Identities=21% Similarity=0.311 Sum_probs=142.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
+|++++||+..||... +|++|||++++|+|++|+|+||+|||||+++|+|+.+ +.+| |.++|+++. ..
T Consensus 2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence 5799999999999876 9999999999999999999999999999999999999 9999 999999863 44
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeec-c------------CC--ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-S------------FD--HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-~------------~~--~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.+.|+.++++... -+||.||+..+...... . |. ....++..++|||||||-++| .+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 56778777766443 48999999987543221 0 11 224467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|++|+||| ++.+.++++.+. +++|.++...+.. |.+ ||++.+|+.+++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999 566667776643 3589999999887 433 89999999988754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-31 Score=243.01 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=138.7
Q ss_pred ccEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
+.+++++||+|.|+ +.. +|+||||+|++|+++||+||||||||||+|+|+|++. |++| +.++|.++..
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 34689999999999 576 9999999999999999999999999999999999999 9999 8999986533
Q ss_pred -HhhhCC-CCCCCChhHHHHHHHHHhcCCceeecc--CCc----------c---CCCCCCCceeccccceEEE-----ec
Q 023106 150 -AHARRG-APWTFNPLLLLNCLKNLRNQGSVYAPS--FDH----------G---VGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 150 -~~~~~~-~~~~~~~~~~~tv~e~l~~~~~~~~~~--~~~----------~---~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+.| +++.+..+..+|+.|++.+...++... ... . ..++.+..||+|||||+.| .+
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 222233 333333344589999998866555321 000 0 1257789999999999988 99
Q ss_pred CCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
|+++|||| .+++.|+++.+. ++++||.++++.. |++ |++++.|++.++...
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999 677788877664 3588899999988 454 899999988775444
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-31 Score=249.92 Aligned_cols=175 Identities=20% Similarity=0.266 Sum_probs=134.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
|++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++| +.++|.++.. .
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999 9999976532 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeeccC---C----------------ccCCCCCCCceeccccceEEE---
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSF---D----------------HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~---~----------------~~~~~~~~~~LSgGekqRv~I--- 205 (287)
..++.+++.+|... .+++.+|+.++...+...+ . ....++.+.+|||||||||.|
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 22233444454432 2788999887543211000 0 012367899999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++|++||||| .+++.|+++.+ .+|++|||++++.+ |++ |++++.|+++++.
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999 45666666543 24699999999976 554 8888899998864
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-31 Score=250.78 Aligned_cols=176 Identities=22% Similarity=0.336 Sum_probs=137.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
+++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| |.++|.++... ..
T Consensus 12 ~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred CceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998765 8999999999999999999999999999999999999 9999 99999865321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++++.++||.+.+ +++.+|+.++..... +. +. ....++++.+|||||+|||+| .+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456777776554 699999987643211 00 00 123478899999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+.+.|+++.. ..|+||||.+++.. |++ |+++..|++.++..
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 44555555433 24799999999876 544 88888898887743
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-31 Score=243.73 Aligned_cols=176 Identities=20% Similarity=0.274 Sum_probs=134.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HA 152 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~ 152 (287)
.+|+++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 6 ~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 6 APIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred ceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence 4799999999998765 9999999999999999999999999999999999999 9999 89999875321 22
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+..+++.+|... .+|+.+|+.+....+. . .+. ....++.+..||+|||||++| .+|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 333445554432 2688899875332211 0 011 112367789999999999988 9999
Q ss_pred EEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
+||||| .+++.|.++.+. ++++||+++++.. |++ |++++.|+++++...
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999 566777766432 4688999999976 544 788889998887544
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-31 Score=246.52 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=135.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AH 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~ 151 (287)
+.+|+++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 45799999999998766 9999999999999999999999999999999999999 9999 8999986532 12
Q ss_pred hhCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+..+++.+|... .+++.+|+.+....+. . .+. ....++.+..|||||||||.| .+|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2344555555433 2688888875322111 0 011 112467889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
++||||| .+++.|.++... ++++||+++++.. |++ |++++.|+++++...
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999 566667666432 4699999999976 554 888889998887544
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-30 Score=218.46 Aligned_cols=176 Identities=19% Similarity=0.275 Sum_probs=138.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||+++..++. +|+++||++.+||++||+||||||||||+|.|+|.+. |++| +.++|.+... .
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 589999999998887 9999999999999999999999999999999999999 9999 8899987533 1
Q ss_pred hhhCC-CCCCCChhHHHHHHHHHhcCCceeeccCC----c-------------cCCCCCCCceeccccceEEE-------
Q 023106 151 HARRG-APWTFNPLLLLNCLKNLRNQGSVYAPSFD----H-------------GVGDPVEDDILVGLQHKVVI------- 205 (287)
Q Consensus 151 ~~~~~-~~~~~~~~~~~tv~e~l~~~~~~~~~~~~----~-------------~~~~~~~~~LSgGekqRv~I------- 205 (287)
...+. +++.......+++.|.+.++...+...-. . ....+...+|||||||||.+
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 22222 34444444447899999887654422111 1 13356778899999999987
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
.++.+|+||| .+++..+++... ++.|-||++++.. |++ ||+++.|+|.+++...
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~E 232 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHH
Confidence 4456999999 567777777765 4689999999998 666 9999999999986544
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-30 Score=216.64 Aligned_cols=177 Identities=17% Similarity=0.256 Sum_probs=133.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
||+++||+|.|+++. +++++|++|++|.+.+||||||||||||+.+++.+++ .++| +.++|.++... ..
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 589999999999987 9999999999999999999999999999999999999 9999 99999875321 00
Q ss_pred hCCCCCCCCh---hHHHHHHHHHhcCCceeec-cCC----------------ccCCCCCCCceeccccceEEE-----ec
Q 023106 153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-SFD----------------HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-~~~----------------~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+...-|. ..-+||.+-+.|+...+.. +.. ....+++..+|||||+||..| ++
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 1111111111 1127888888887654321 111 123478999999999999766 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~ 260 (287)
.++++||| .+++.|+.+.+ .+++|-||.+++.. .++ |+++.+|++++++....
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~ 228 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHH
Confidence 99999999 34444544433 35799999999987 444 89999999999875543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-31 Score=247.60 Aligned_cols=174 Identities=18% Similarity=0.307 Sum_probs=135.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc--c-eeeCCCCHHHH-hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--A-SSFDSQDPKEA-HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~--G-i~~~g~~~~~~-~~ 152 (287)
.|+++||+|.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++ | +.++|.++... ..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 489999999998755 8999999999999999999999999999999999999 999 9 88999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||.+.+ +++.+|+.++..... + .+. ....++++.+|||||||||+| .+|+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456677776554 699999987543211 0 000 123478899999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC-----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD-----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~-----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|.++.+ ..|+||||++++.. |++ |+++..|+++++..
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 44555554433 24799999999876 554 88888999888754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-30 Score=215.82 Aligned_cols=171 Identities=22% Similarity=0.254 Sum_probs=133.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||.+++|.+.|+..+ -.+++.|+.|++++|+||+|||||||+++|+|.+. |.+| +.++|++.... ...+
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 367889999998754 36889999999999999999999999999999999 9999 89999976443 3334
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
-+...||..++ ++|.+|+.++.......-. .+..++.|.+|||||||||+| .+-+++
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 46777887665 8999999987653321110 123478999999999999998 667799
Q ss_pred eEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|||| +++..+.+++++ .+||||..+.+.+ |++ ||+.+.|...++.
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999 445555555543 4699999999987 444 8888888887764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-31 Score=247.83 Aligned_cols=176 Identities=18% Similarity=0.285 Sum_probs=136.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
+++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 17 ~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPPY 89 (377)
T ss_pred CceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998755 8999999999999999999999999999999999999 9999 89999865321 23
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++++++.||.+.+ +++.+|+.++....... +. ....++++.+|||||||||+| .+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4456777776544 69999998764321100 00 123478899999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+.+.|.++.. ..|+||||++++.. |++ |+++..|++.++..
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999 33344444432 24799999999876 544 78888899888753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=211.53 Aligned_cols=161 Identities=20% Similarity=0.195 Sum_probs=129.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
+|++++++|..+.....+.+|++|+|.|++||-+|||||+|||||||+-+++|+.. |++| +.+.|++...
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999887777789999999999999999999999999999999999999 9999 9999987532
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc----CC-----------ccCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS----FD-----------HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~----~~-----------~~~~~~~~~~LSgGekqRv~I----- 205 (287)
..+...++++||.+.+ ++.+||+..+..+.... +. ......+|.+|||||||||+|
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc
Confidence 1233447777776654 89999999876654311 11 113367999999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
..|++|+.|| .+.+.+..+..+ .|+||||..++.+
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 7899999999 344444444332 4799999999987
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-31 Score=247.86 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=133.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45699999999998765 8999999999999999999999999999999999999 9999 88999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.+.+.+.+|...+ +++.+|+.++..... . .+. ....++.+.+|||||||||+| .+|+
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2345666665433 689999987532110 0 000 113467899999999999998 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999 34555555532 24799999998876 444 7878888888774
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-31 Score=243.61 Aligned_cols=174 Identities=20% Similarity=0.336 Sum_probs=135.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
+|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|+++... ..++
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 589999999998765 8999999999999999999999999999999999999 9999 99999865321 1234
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCcee----ecc--------------CC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVY----APS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~----~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+.||...+ +++.+|+.++.... ... +. ....++++.+|||||||||+| .+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 56667766543 69999998864321 000 00 113468899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|++||||| .+++.|.++.. ..|+||||++++.. |++ |++++.|++.++..
T Consensus 155 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 155 PQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999 44555555543 24799999999887 554 78888898888743
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-30 Score=230.44 Aligned_cols=171 Identities=22% Similarity=0.350 Sum_probs=127.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------H
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------A 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------~ 150 (287)
|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46899999998655 9999999999999999999999999999999999999 9999 8899976422 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCcee--ec-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVY--AP-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~--~~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|...+ +++.+|+.++.... .. .+. ....++.+.+|||||+|||+| .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 74 RLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred HHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 223345555554332 68889887642111 00 000 112367889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999 45556665532 24699999998865 443 677777877665
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=209.45 Aligned_cols=175 Identities=17% Similarity=0.236 Sum_probs=138.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----- 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----- 148 (287)
++.|+++|+.|+||... +|++||++-.+|++|.|||.+|||||||++||.=+.. |+.| |.++|+.+.
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 45699999999999987 9999999999999999999999999999999999999 9999 889887421
Q ss_pred ----------H-HhhhCCCCCCCChhHH---HHHHHHHhcCCce--eeccC--------------CccCCCCCCCceecc
Q 023106 149 ----------E-AHARRGAPWTFNPLLL---LNCLKNLRNQGSV--YAPSF--------------DHGVGDPVEDDILVG 198 (287)
Q Consensus 149 ----------~-~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~--~~~~~--------------~~~~~~~~~~~LSgG 198 (287)
. .+.+...+++||.+++ +|+++|+....-- ..+.. -....+.||..||||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 1 1223346677777665 8999998764210 00000 012346899999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
|+||++| .+|.++|+|| ++++.++++..+ .++|||.|.++.. .++ |.+-++|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999 8999999999 677777777765 4799999999987 444 777779999
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+++.
T Consensus 237 ~qvf 240 (256)
T COG4598 237 EQVF 240 (256)
T ss_pred HHHh
Confidence 9884
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-30 Score=226.39 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=124.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCcc-eeeCCCCHHH--
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll-----~~~~p~~G-i~~~g~~~~~-- 149 (287)
|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|++ + |++| +.++|.++..
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 47899999998765 999999999999999999999999999999999999 8 9999 8999987532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCCc-cCCCCC--CCceeccccceEEE-
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFDH-GVGDPV--EDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~~-~~~~~~--~~~LSgGekqRv~I- 205 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+.- ...++. +.+|||||+||++|
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred hHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 1223345555555433 688898876422110 0 0000 011233 69999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 8999999999 45566665544 35799999998865 443 66666666543
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-30 Score=238.23 Aligned_cols=180 Identities=16% Similarity=0.214 Sum_probs=133.8
Q ss_pred ccEEEecCchhhhhhhh---------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~---------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
.++|+++||++.|+... ....+++|+||+|.+|+++||+|+||||||||+++|+|+++ |++| |.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 45899999999996311 12348999999999999999999999999999999999999 9999 99999
Q ss_pred CCHHH------HhhhCCCCCCCChhH-----HHHHHHHHhcCCceee---c---------------cCCccCCCCCCCce
Q 023106 145 QDPKE------AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA---P---------------SFDHGVGDPVEDDI 195 (287)
Q Consensus 145 ~~~~~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~---~---------------~~~~~~~~~~~~~L 195 (287)
.++.. ...+..+.+++|... .+++.+|+.+...... . .......++++.+|
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 86521 112345667777641 2678888764211100 0 01112347899999
Q ss_pred eccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhc
Q 023106 196 LVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 196 SgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
||||+|||+| .+|++||+|| .+++.|.++.+ ..|+||||++++.. |++ |++++
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999998 9999999999 45555555533 24799999999986 444 88888
Q ss_pred CCCcHHHHH
Q 023106 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~~~~~ 257 (287)
.|++.++..
T Consensus 243 ~g~~~~i~~ 251 (331)
T PRK15079 243 LGTYDEVYH 251 (331)
T ss_pred EcCHHHHHc
Confidence 898877753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-30 Score=243.82 Aligned_cols=179 Identities=22% Similarity=0.290 Sum_probs=133.8
Q ss_pred ccEEEecCchhhhhhh-------hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-------~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
-++++++||+|.|... ...+.+++||||++.+||++||||+||||||||.|+|+|+++ |++| +.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCcc
Confidence 4689999999999742 123568999999999999999999999999999999999999 9999 8898876
Q ss_pred H--HH---HhhhCCCCCCCChhH-----HHHHHHHHhcCCceeec-----------------cCCccCCCCCCCceeccc
Q 023106 147 P--KE---AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVYAP-----------------SFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 147 ~--~~---~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~~-----------------~~~~~~~~~~~~~LSgGe 199 (287)
. .. ...+..+...||++. -+|+.+.+......+.. .......+++|++|||||
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence 2 11 112223444555432 27888877765433211 111124579999999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
||||+| .+|.++++|| .+++.|.++.+ . .+|||||++.+.. |++ |++++.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 999999 9999999999 44555554443 3 3799999999988 555 999999966
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+++.
T Consensus 515 ~~v~ 518 (539)
T COG1123 515 EKVF 518 (539)
T ss_pred HHHh
Confidence 6663
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-30 Score=237.03 Aligned_cols=175 Identities=19% Similarity=0.257 Sum_probs=130.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
+|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 699999999998765 9999999999999999999999999999999999999 9999 8899976421 1122
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+++.+|... .+++.+|+.+...... . .+. ....++.+.+|||||||||.| .+|++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 33444444432 2578888764221110 0 010 012367889999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
||||| .+++.|.++... ++++|||++++.. |++ |+++..|+++++...
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999 456666665332 4699999999876 444 787788888877543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-30 Score=236.58 Aligned_cols=183 Identities=14% Similarity=0.221 Sum_probs=128.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~~~--- 149 (287)
|.+|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++.. .+++| +.++|.++..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 457999999999976322234899999999999999999999999999999999998610 12788 8999986421
Q ss_pred --Hh--hhCCCCCCCChhH-----HHHHH----HHHhcCCcee-------------eccCCc--cCCCCCCCceeccccc
Q 023106 150 --AH--ARRGAPWTFNPLL-----LLNCL----KNLRNQGSVY-------------APSFDH--GVGDPVEDDILVGLQH 201 (287)
Q Consensus 150 --~~--~~~~~~~~~~~~~-----~~tv~----e~l~~~~~~~-------------~~~~~~--~~~~~~~~~LSgGekq 201 (287)
.. +...+.+++|... .+++. +++....... ...... ...++++.+|||||+|
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 11 1224556666531 12333 3332211000 000110 1235789999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
||+| .+|++||+|| .+++.|.++.+ ..|+||||++++.. |++ |++++.|++.+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9998 8999999999 45666666543 25799999999876 554 89999999888
Q ss_pred HHH
Q 023106 255 VAK 257 (287)
Q Consensus 255 ~~~ 257 (287)
+..
T Consensus 241 ~~~ 243 (326)
T PRK11022 241 IFR 243 (326)
T ss_pred Hhh
Confidence 753
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-30 Score=240.00 Aligned_cols=177 Identities=20% Similarity=0.269 Sum_probs=130.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||+++|++......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999721101238999999999999999999999999999999999999 9999 8999976431 1
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+++.+|...+ +++.+|+.++...... .+. ....++++.+|||||||||+| .
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 123445566655432 6888988764221100 000 112357889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999 45666666542 24699999999875 444 7777788877764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-30 Score=227.08 Aligned_cols=175 Identities=15% Similarity=0.250 Sum_probs=127.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 45799999999998655 9999999999999999999999999999999999999 9999 8888875421
Q ss_pred -------HhhhCCCCCCCChhHH---HHHHHHHhcCCc----eee-----------ccCC-ccCCCCCCCceeccccceE
Q 023106 150 -------AHARRGAPWTFNPLLL---LNCLKNLRNQGS----VYA-----------PSFD-HGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 -------~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----~~~-----------~~~~-~~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.++.. ... ..+. ....++.+.+|||||+|||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH
Confidence 1122344555554322 578888764211 000 0000 0123578899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 88 8999999999 34555555433 24699999998865 443 6777778776653
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-30 Score=232.75 Aligned_cols=178 Identities=15% Similarity=0.244 Sum_probs=131.9
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------ 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------ 148 (287)
+|+++||++.|++... ...+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 5899999999975310 1238999999999999999999999999999999999999 9999 888875431
Q ss_pred ---------------------HHhhhCCCCCCCChh--H--HHHHHHHHhcCCceee----------------ccCCccC
Q 023106 149 ---------------------EAHARRGAPWTFNPL--L--LLNCLKNLRNQGSVYA----------------PSFDHGV 187 (287)
Q Consensus 149 ---------------------~~~~~~~~~~~~~~~--~--~~tv~e~l~~~~~~~~----------------~~~~~~~ 187 (287)
....+..++++||.+ . ..++.+|+.++..... .......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 112234466666642 1 2589999986532110 0111123
Q ss_pred CCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH--
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL-- 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi-- 243 (287)
.++.+.+|||||||||+| .+|++||||| .+++.|.++.+ .+|++|||++.+.. |++
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 467899999999999998 8999999999 45555555533 24799999998876 554
Q ss_pred --HHHhcCCCcHHHHH
Q 023106 244 --KRHISTGKPPDVAK 257 (287)
Q Consensus 244 --gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 239 KDGKIIKDGDTYDILS 254 (305)
T ss_pred ECCEEEEECCHHHHhc
Confidence 88888898888653
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-30 Score=224.74 Aligned_cols=170 Identities=24% Similarity=0.360 Sum_probs=122.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~ 154 (287)
|+++|+++.|++.. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 47899999998755 9999999999999999999999999999999999999 9999 8898875421 11122
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.+.+|... .+++.+|+.+....... .+. ....++++.+|||||+||++| .+|+++
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ll 153 (220)
T cd03265 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153 (220)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3444444432 25778887653211100 011 012367889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
|||| .+++.|.++.. .+|++|||++++.. |++ |+++..|++++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999 34555555432 24799999999876 433 56666665543
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-29 Score=224.51 Aligned_cols=175 Identities=22% Similarity=0.352 Sum_probs=129.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.+|+++||++.|++.. +|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998655 9999999999999999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+.++.+.++...+ .++.+|+.+...... . .+. ....++.+.+|||||+|||+|
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 1123345555554332 588888876432110 0 000 012356788999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.+.++.. ..|++|||++.+.. +++ |++++.|+++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 8999999999 34455555432 24699999988865 333 7777788877764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-30 Score=233.92 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=132.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
+++++|++|+|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 589999999998765 9999999999999999999999999999999999999 9999 9999976532 1223
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+++.++... .+++.+|+.+....+. + .+. ....++.+..|||||+|||.| .+|++
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 34555555432 2678888875332211 0 011 112367889999999999988 99999
Q ss_pred EeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
||||| .+++.+.++... ++++||+++++.. |++ |++++.|+++++...
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999 456666665432 4699999999876 444 788888988887543
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-29 Score=228.15 Aligned_cols=181 Identities=16% Similarity=0.235 Sum_probs=130.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~---- 149 (287)
+|+++||+..|......+.+++||||+|.+||++||||.|||||||+.+.|+|+++. ..-.+| +.++|.++..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 378999999996543345599999999999999999999999999999999999971 112467 8899986421
Q ss_pred -H--hhhCCCCCCCChhH-----HHHHHHHHhcCCceee------------------ccCCc--cCCCCCCCceeccccc
Q 023106 150 -A--HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA------------------PSFDH--GVGDPVEDDILVGLQH 201 (287)
Q Consensus 150 -~--~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~------------------~~~~~--~~~~~~~~~LSgGekq 201 (287)
. .+...+.+.||++. .+++-+.+......+. -.... ...+.||++|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 1 12223677777643 2333333322111110 01111 1336899999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
||.| .+|++||+|| ++++.|.++.+ . .+|||||+..+.+ |++ |++++.|++++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 9988 9999999999 45555555544 2 4699999999998 655 99999999998
Q ss_pred HHH
Q 023106 255 VAK 257 (287)
Q Consensus 255 ~~~ 257 (287)
+..
T Consensus 241 i~~ 243 (316)
T COG0444 241 IFK 243 (316)
T ss_pred Hhc
Confidence 854
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-29 Score=216.38 Aligned_cols=176 Identities=17% Similarity=0.254 Sum_probs=136.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
++++++|+|+||++. +++|+||++++|++.|++|+|||||||++|+|+|++. |++| |.++|.++... +.+.
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999988 9999999999999999999999999999999999999 9999 99999987543 3333
Q ss_pred C-CCCCCChhHHHHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 G-APWTFNPLLLLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~-~~~~~~~~~~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
| .|..-..+.-+++.|.+.+.+.+.... ++ .....+.+.+||-|++|++.+ ++|+++||
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 3 233222333378889888765554221 11 123356889999999999976 99999999
Q ss_pred ec----------c-hHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHH
Q 023106 214 DG----------G-VWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 214 DE----------~-~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~ 259 (287)
|| + +.+.+.++.+. +||.||-|+.+.+ +++ |+.+.+|+.+++...+
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99 2 22334444443 5799999999987 665 7888899998886644
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-29 Score=219.00 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=117.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
||+++|+++.|++.. ..+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 488999999996421 128999999999999999999999999999999999999 9999 89999865321
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..++.+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+|||||+|||+| .
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 123345566655432 588888876421110 0011 112367889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|++||||| .+++.|.++.+ .+|++|||++++..
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999 45555555532 24799999998864
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-29 Score=223.04 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=129.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
|.+|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45799999999997655 8999999999999999999999999999999999999 9999 8899976532 1
Q ss_pred hhhCCCCCCCChhHH--HHHHHHHhcCCceee----------ccCCc--cCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
..+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+.+|||||+||++| .+|+++
T Consensus 74 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred HhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 122344555554322 588888875422110 01111 12357889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|||| .+.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999 34455555432 24799999999765 443 6777778777763
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-29 Score=209.71 Aligned_cols=159 Identities=18% Similarity=0.271 Sum_probs=124.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
|.++.+++++..|+++. ..+|+|+|++|.+|+.+.++||||||||||+++++|+.. |..| +.++|..+..--..
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 55788999999998764 448999999999999999999999999999999999999 9999 88998866433333
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+| .+||.+. .+++.+|+.++..+...... .+..++++-+|||||+|||-| .+|++
T Consensus 76 rg--vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 76 RG--VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ce--eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 44 3555544 48999999998665421100 124478999999999999988 89999
Q ss_pred EeEec-----------chHHHHHhcc----CCeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
|+||| .+.+.+.+++ +..++||||++++.-
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh
Confidence 99999 2223333333 235799999999986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-29 Score=221.70 Aligned_cols=172 Identities=22% Similarity=0.308 Sum_probs=127.3
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++||++.|+ +.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 488999999997 544 8999999999999999999999999999999999999 9999 8999976532
Q ss_pred -HhhhCCCCCCCChhH---HHHHHHHHhcCCcee---------e-cc------------CC-ccCCCCCCCceeccccce
Q 023106 150 -AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY---------A-PS------------FD-HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~---------~-~~------------~~-~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|... .+++.+|+.++.... . .. +. ....++.+.+|||||+||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 112333555555432 268889987542110 0 00 00 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+.+.|.++.+ .+|++|||++++.. +++ |++++.|+++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 998 8999999999 44555555532 24699999999865 443 777778887765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-29 Score=230.32 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=131.5
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------ 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------ 148 (287)
||+++||++.|+.... ...+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974210 1238999999999999999999999999999999999999 9999 899997642
Q ss_pred -HHhhhCCCCCCCChh--HH--HHHHHHHhcCCceee-c-------------cCC--ccCCCCCCCceeccccceEEE--
Q 023106 149 -EAHARRGAPWTFNPL--LL--LNCLKNLRNQGSVYA-P-------------SFD--HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 149 -~~~~~~~~~~~~~~~--~~--~tv~e~l~~~~~~~~-~-------------~~~--~~~~~~~~~~LSgGekqRv~I-- 205 (287)
....+..+++++|.+ .+ .++.+|+.++..... + .+. ....++.+..||||||||++|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHH
Confidence 112233455666643 11 588999876532110 0 011 113367889999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 8999999999 44555555433 24699999998865 554 78888898888753
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-29 Score=222.11 Aligned_cols=172 Identities=21% Similarity=0.265 Sum_probs=127.4
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
|+++||++.|++ .. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468999999976 44 8999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH---HHHHHHHHhcCCcee---------ec-------------cCC-ccCCCCCCCceeccccceE
Q 023106 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY---------AP-------------SFD-HGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~---------~~-------------~~~-~~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|... ..++.+|+.+..... .. .+. ....++.+.+|||||+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 112334555555432 268888887532100 00 000 0123567899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|++||||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 88 8999999999 45566666532 24699999999875 443 7777788877764
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-29 Score=215.33 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=117.3
Q ss_pred EecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 79 ~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
+++||++.|++ .. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.....+..+
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36899999976 55 8999999999999999999999999999999999999 9999 88999876433333445
Q ss_pred CCCCChhH----HHHHHHHHhcCCceeec----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 157 PWTFNPLL----LLNCLKNLRNQGSVYAP----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 157 ~~~~~~~~----~~tv~e~l~~~~~~~~~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
.+.+|... ..++.+|+.+....... .+. ....++.+..|||||+||++| .+|+++||||
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 66666531 25889998764321100 010 112367889999999999988 8999999999
Q ss_pred ----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..+++|||++++..
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45555555532 24699999998764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-29 Score=223.58 Aligned_cols=176 Identities=19% Similarity=0.245 Sum_probs=126.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
||+++|+++.|++......+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999765100128999999999999999999999999999999999999 9999 8999986421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
...+..+.+.+|...+ +++.+|+.+....... .+. ....++.+..|||||+|||+| .
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1123345555554332 5788888653211100 000 112356789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999 45556655532 24699999998865 333 677777766554
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-29 Score=233.46 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=131.2
Q ss_pred ccEEEecCchhhhhhhh------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+++|+++||++.|+... ....+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 35799999999996311 01348999999999999999999999999999999999999 9999 89999764
Q ss_pred HH------HhhhCCCCCCCChhH--H---HHHHHHHhcCCce----e-------------eccCCccCCCCCCCceeccc
Q 023106 148 KE------AHARRGAPWTFNPLL--L---LNCLKNLRNQGSV----Y-------------APSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 148 ~~------~~~~~~~~~~~~~~~--~---~tv~e~l~~~~~~----~-------------~~~~~~~~~~~~~~~LSgGe 199 (287)
.. ...+..+.++||... + +++.+++...... . .........++++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 21 122334666666542 1 4555555321100 0 00111123467899999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
+|||+| .+|++||+|| .+++.|.++.+ ..|+||||++++.. |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999998 8999999999 45566655533 24799999999976 554 888999988
Q ss_pred HHHHH
Q 023106 253 PDVAK 257 (287)
Q Consensus 253 ~~~~~ 257 (287)
+++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88754
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-30 Score=222.79 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=122.5
Q ss_pred EEecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhh
Q 023106 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~ 152 (287)
|+++||++.|++ .. +|+++||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence 478999999976 44 8999999999999999999999999999999999999 9999 8899976532 112
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
...+.+.+|... ..++.+|+.+...... . .+. ....++.+.+||+||+|||+| .+|+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 223444554432 2577888765321110 0 011 012356788999999999988 8999
Q ss_pred EEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
++|||| .+++.|.++.+. +|++|||++.+.. +++ |++++.|++++
T Consensus 154 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 154 VLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999 455556555442 4699999998865 333 56666666544
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=216.74 Aligned_cols=165 Identities=16% Similarity=0.240 Sum_probs=124.9
Q ss_pred ccEEEecCchhhhhhhhh-----ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~-----~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
+++++++||+|.|..... .+.+++||||+|++||++||||+||||||||.|+|+|+++ |++| |+++|+++.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 458999999999964311 2468999999999999999999999999999999999999 9999 999998863
Q ss_pred HHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--------
Q 023106 149 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------- 215 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------- 215 (287)
... ..-....+...++.+. .......+++++|||||+||+.| .+|+++++||
T Consensus 79 ~~~------~~~~~~~v~elL~~Vg---------l~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS 143 (268)
T COG4608 79 KLS------KEERRERVLELLEKVG---------LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 (268)
T ss_pred hcc------hhHHHHHHHHHHHHhC---------CCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence 321 0000011223333322 22345568999999999999998 8999999999
Q ss_pred ---chHHHHHhcc---CC-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 216 ---GVWKDVSSMF---DE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 ---~~~~~l~~~~---~~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+++.+.++. .. .+|+|||+..+.. |++ |++++.|..+++..
T Consensus 144 iqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 144 VQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 3444444443 33 3699999999987 554 89999999888754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-29 Score=228.87 Aligned_cols=177 Identities=12% Similarity=0.154 Sum_probs=131.8
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
.|+++||++.|++... ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974210 1238999999999999999999999999999999999999 9999 9999986521
Q ss_pred --HhhhCCCCCCCChh--H--HHHHHHHHhcCCceee-c-------------cCC--ccCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPL--L--LLNCLKNLRNQGSVYA-P-------------SFD--HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~--~--~~tv~e~l~~~~~~~~-~-------------~~~--~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+++.+|.. . ..++.+|+.++..... . .+. ....++.+.+|||||+|||+|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 12233456666643 1 2699999976422100 0 111 122367899999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999 45566665533 24799999999876 554 7888888887764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-29 Score=220.35 Aligned_cols=171 Identities=21% Similarity=0.294 Sum_probs=125.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 47899999998655 8999999999999999999999999999999999999 9999 8999975421 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee------------ccCC--ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA------------PSFD--HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~------------~~~~--~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+..+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|++
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred hcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3345555554332 588888876432110 0010 112357788999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+|||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999 45566665542 24699999998865 333 666666665544
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-29 Score=229.01 Aligned_cols=178 Identities=16% Similarity=0.231 Sum_probs=132.2
Q ss_pred EEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
+|+++||++.|++.. ....+|+||||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 489999999997421 01238999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee--------------ccCCc---cCCCCCCCceeccccceEEE---
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA--------------PSFDH---GVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~--------------~~~~~---~~~~~~~~~LSgGekqRv~I--- 205 (287)
...+..+++.+|... ..++.+|+.++..... ..+.- ...++.+..|||||+||++|
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHH
Confidence 122334556666431 2588999876422110 00111 23467899999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++..
T Consensus 159 L~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 45666665543 24699999999865 554 78888898887653
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-29 Score=222.39 Aligned_cols=171 Identities=21% Similarity=0.334 Sum_probs=124.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 46899999998655 8999999999999999999999999999999999999 9999 8899876422 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+.++.+.+|...+ +++.+|+.+....... .+. ....++.+..|||||+||++| .+|+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2334455554322 5788888753211100 000 012357788999999999988 8999
Q ss_pred EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
+||||| .+++.|.++.. ..|++|||++.+.. +++ |+++..|+.+++
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999 44555555433 24699999998876 443 677677776655
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-29 Score=228.40 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=130.7
Q ss_pred EEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
+|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 689999999997421 01238999999999999999999999999999999999999 9999 9999976421
Q ss_pred --HhhhCCCCCCCChh--HH--HHHHHHHhcCCceee--------------ccCCc--cCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPL--LL--LNCLKNLRNQGSVYA--------------PSFDH--GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~--~~--~tv~e~l~~~~~~~~--------------~~~~~--~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+.++++.+|.. .+ .++.+|+.++..... ..+.- ...++.+.+||||||||++|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHH
Confidence 12233456666643 12 588899875321100 00111 13367889999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.+ .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 45555555543 24699999999876 444 77778888777643
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-29 Score=222.58 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=129.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
|++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 56799999999998755 8999999999999999999999999999999999987 5 589 889997642
Q ss_pred H---HhhhCCCCCCCChhH---HHHHHHHHhcCCceee---c-------------cCCc-----cCCCCCCCceeccccc
Q 023106 149 E---AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---P-------------SFDH-----GVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~---~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---~-------------~~~~-----~~~~~~~~~LSgGekq 201 (287)
. ...+.++.+.+|... ..++.+|+.+...... . .+.- ...++.+.+|||||+|
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence 1 122334555555533 2688888875421110 0 0000 1235678999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||+| .+|+++|||| .+++.|.++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 9988 8999999999 44555555433 24699999998765 444 7777888877764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-29 Score=214.67 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=115.5
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAP 157 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~ 157 (287)
+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... +..+.
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~--~~~i~ 71 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKE--RKRIG 71 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHH--HhheE
Confidence 3689999997654 8999999999999999999999999999999999999 9999 89999877532 23344
Q ss_pred CCCChhHH-----HHHHHHHhcCCceeec------------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 158 WTFNPLLL-----LNCLKNLRNQGSVYAP------------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 158 ~~~~~~~~-----~tv~e~l~~~~~~~~~------------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.+|...+ .++.+|+.+....... .+. ....++.+.+|||||+||++| .+|
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 45544321 5889998764321100 000 012356889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999 45555655542 24799999998864
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-29 Score=227.63 Aligned_cols=175 Identities=16% Similarity=0.262 Sum_probs=128.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 45799999999998655 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCceee---------------ccCC-ccCCCCCCCceeccccceEEE---
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA---------------PSFD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~---------------~~~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
...+..+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+|||||+|||+|
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 1112334444544322 577888765311000 0011 112356789999999999988
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.. +++ |++++.|+++++.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 45555665532 24799999998865 433 6777778777654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-29 Score=223.61 Aligned_cols=171 Identities=27% Similarity=0.398 Sum_probs=125.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46899999998654 8999999999999999999999999999999999999 9999 8899875422 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec------------------------cCC-ccCCCCCCCceeccccceEE
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------------------SFD-HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------------------~~~-~~~~~~~~~~LSgGekqRv~ 204 (287)
+.++.+.+|...+ +++.+|+.+....... .+. ....++.+.+|||||+|||+
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE 153 (236)
T ss_pred hcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH
Confidence 2345555554332 5888888654221100 000 01235778999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
| .+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 8 8999999999 45556655542 24799999999876 443 666667776665
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-29 Score=224.11 Aligned_cols=174 Identities=19% Similarity=0.258 Sum_probs=128.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
||+++||++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 589999999998755 8999999999999999999999999999999999999 9999 8899875421 111
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE----e----
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI----V---- 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I----~---- 206 (287)
...+.+.++...+ .++.+|+.+....... .+. ....++.+.+|||||+|||+| .
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 2234444444322 5888888764321100 000 012367889999999999988 4
Q ss_pred ---cCCEEeEec-----------chHHHHHhcc-C---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 207 ---DGNYLFLDG-----------GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ---~p~lLllDE-----------~~~~~l~~~~-~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.|.++. + .+|++|||++++.. |++ |++++.|++.++..
T Consensus 155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 899999999 4455666554 2 24799999999875 443 77777888777643
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-29 Score=220.67 Aligned_cols=156 Identities=19% Similarity=0.322 Sum_probs=115.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... .....
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 46899999998755 8999999999999999999999999999999999999 9999 88999765321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+||||||||++| .+|+++|
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4555554332 578888865321110 0011 012356788999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.+ .++++|||++++..
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 999 45566665532 24699999998764
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-29 Score=222.76 Aligned_cols=175 Identities=17% Similarity=0.225 Sum_probs=129.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 45799999999998655 9999999999999999999999999999999999999 9999 8999976422
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec------------cCC--ccCCCCCCCceeccccceEEE-----ec
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------SFD--HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------~~~--~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
...+.++.+.++...+ .++.+|+.+....... .+. ....++.+..|||||+||++| .+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 1123344444544322 5788888763211000 010 012246788999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999 44555555433 24699999998876 443 7778888887774
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-29 Score=227.55 Aligned_cols=172 Identities=17% Similarity=0.215 Sum_probs=129.9
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
+|+++||++.|+ +.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 4 ~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 799999999996 333 8999999999999999999999999999999999999 9999 8999976422 11
Q ss_pred hhCCCCCCCChhH----HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLL----LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+++.+|.+. ..++.+|+.++...... .+. ....++.+.+|||||+|||.| .+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~ 156 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD 156 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 2234566666531 15889999764221000 000 113467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|++||||| .+++.|.++.+ .++++|||++++.+ |++ |++++.|+++++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 157 PDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999 45566665543 24699999999876 444 788888887654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-29 Score=223.98 Aligned_cols=173 Identities=21% Similarity=0.362 Sum_probs=127.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 589999999998755 9999999999999999999999999999999999999 9999 88998764321 1123
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeec----c--------------CC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAP----S--------------FD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~----~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+.+.+|...+ .++.+|+.+....... . +. ....++.+.+||+||+|||+| .+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 154 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 34455554322 5888888764221100 0 00 012356788999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++.+.. |++ |+++..|+++++.
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999 45555655532 24799999998765 443 6777778776653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-29 Score=232.76 Aligned_cols=183 Identities=15% Similarity=0.193 Sum_probs=129.9
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~~~--- 149 (287)
|++|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++.. .|++| +.++|+++..
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 468999999999953211233899999999999999999999999999999999998611 14789 8999976421
Q ss_pred --H--hhhCCCCCCCChhH-----HHHHHHHHhcCCc---eee-----------------c--cCCc--cCCCCCCCcee
Q 023106 150 --A--HARRGAPWTFNPLL-----LLNCLKNLRNQGS---VYA-----------------P--SFDH--GVGDPVEDDIL 196 (287)
Q Consensus 150 --~--~~~~~~~~~~~~~~-----~~tv~e~l~~~~~---~~~-----------------~--~~~~--~~~~~~~~~LS 196 (287)
. .+...+.++||... .+++.+++..... ... . .... ...++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 1 11234666666532 2566666643100 000 0 0000 11257899999
Q ss_pred ccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcC
Q 023106 197 VGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 197 gGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~ 249 (287)
|||+|||+| .+|++||+|| .+++.|.++.+ ..||||||++++.. |++ |++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999998 8999999999 45666666543 24799999999976 444 888889
Q ss_pred CCcHHHHH
Q 023106 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~~~~~ 257 (287)
|+++++..
T Consensus 241 g~~~~i~~ 248 (330)
T PRK15093 241 APSKELVT 248 (330)
T ss_pred CCHHHHHh
Confidence 98887753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-29 Score=222.42 Aligned_cols=175 Identities=13% Similarity=0.190 Sum_probs=129.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
.++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 34799999999998655 8999999999999999999999999999999999998 7 478 889997642
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCC-----ccCCCCCCCceeccccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFD-----HGVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~-----~~~~~~~~~~LSgGekq 201 (287)
. ...+.++.+.+|...+ .++.+|+.++...... .+. ....++.+.+|||||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred cccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 1 1223445555554332 6888888764221100 000 01235678999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||+| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9998 8999999999 45555555533 24699999999865 443 7777888877764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-29 Score=218.02 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=115.6
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA------ 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~------ 150 (287)
|+++||++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4689999999761000128999999999999999999999999999999999999 9999 88999865321
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|...+ +++.+|+.+....... .+. ....++.+.+|||||+|||+| .
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 78 AFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred HHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 122345555554332 5888888764321100 000 012356789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+|++||||| .+++.|.++.+ .+|++|||++++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 999999999 45566666543 2469999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-29 Score=223.58 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=127.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~- 149 (287)
+|+++||++.|++.. +++|+||+|++|+++||+|+||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 488999999998755 8999999999999999999999999999999999998 88 99 8899976532
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+|||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred ccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 1223345555544322 577788765321110 00110 123567899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 88 8999999999 44555555443 35799999998875 444 7777788877764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=228.07 Aligned_cols=158 Identities=23% Similarity=0.301 Sum_probs=131.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~ 150 (287)
+.+++++++|.|++.. ++++|||+|.+|||.||+|.||||||||+++|.|+++ |++| |+++|+.+. ..
T Consensus 3 ~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 3 PALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred ceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHHH
Confidence 4799999999999776 9999999999999999999999999999999999999 9999 999998653 23
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCcee-eccCCc-----------------cCCCCCCCceeccccceEEE----
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVY-APSFDH-----------------GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~-~~~~~~-----------------~~~~~~~~~LSgGekqRv~I---- 205 (287)
..+.|+++++|.+.+ +|+.||+.++.... ....+. -..+.++.+||.||||||.|
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH
Confidence 456788888888765 89999999886532 111111 12367899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.++++||||| ++++.++.+... +|||||-++++.+
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 8999999999 456666666554 5799999999987
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-29 Score=225.89 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=127.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 489999999998655 9999999999999999999999999999999999999 9999 8999976521 1
Q ss_pred hhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|... ..++.+|+.+...... . .+. ....++.+.+|||||+||++| .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 12234555555432 1356677654311100 0 000 012357889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999 45555555532 24699999999865 443 7777888877764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-29 Score=226.49 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=132.1
Q ss_pred EEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
.|+++||++.|++.. ....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 489999999996421 01238999999999999999999999999999999999999 9999 9999976521
Q ss_pred --HhhhCCCCCCCChhH--H--HHHHHHHhcCCcee-ec-------------cCCc--cCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPLL--L--LNCLKNLRNQGSVY-AP-------------SFDH--GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~-~~-------------~~~~--~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+++.+|... + .++.+|+.++.... .. .+.- ...++.+.+|||||+|||+|
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 122344666676531 1 58999998642110 00 0111 12357899999999999998
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.+.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 45555665532 24799999999865 554 78888898887654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-29 Score=231.57 Aligned_cols=181 Identities=15% Similarity=0.227 Sum_probs=129.5
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHH
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKE 149 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~ 149 (287)
.+++|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++ |. +| |.++|.++..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 35689999999999632112348999999999999999999999999999999999998 85 89 9999986421
Q ss_pred -----Hh--hhCCCCCCCChhH--H---HHHHHHHhcC----Ccee-------------eccCCc--cCCCCCCCceecc
Q 023106 150 -----AH--ARRGAPWTFNPLL--L---LNCLKNLRNQ----GSVY-------------APSFDH--GVGDPVEDDILVG 198 (287)
Q Consensus 150 -----~~--~~~~~~~~~~~~~--~---~tv~e~l~~~----~~~~-------------~~~~~~--~~~~~~~~~LSgG 198 (287)
.. +...+.++||... + +++.+++... .... ...... ...++++.+||||
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 11 1234666676642 1 3444444321 1000 001111 1125689999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|+|||+| .+|++||+|| .+++.|.++.+ ..||||||++.+.. |++ |++++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999998 9999999999 45555555533 24799999999875 544 89899999
Q ss_pred cHHHHH
Q 023106 252 PPDVAK 257 (287)
Q Consensus 252 ~~~~~~ 257 (287)
++++..
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 888753
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-29 Score=220.71 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=128.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
||+++|++++|++.. +|+++||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 699999999998755 9999999999999999999999999999999999999 9999 88999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCcee---ec---c------------CC-ccCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVY---AP---S------------FD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~---~~---~------------~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+.+.+|...+ +++.+|+.++.... .. . +. ....++.+.+|||||+|||+|
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 154 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh
Confidence 2334455544322 57888887642100 00 0 00 012367889999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++..
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 8999999999 34555555432 24799999999876 443 77777888777643
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-29 Score=219.43 Aligned_cols=173 Identities=19% Similarity=0.248 Sum_probs=128.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H-h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A-H 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~-~ 151 (287)
+|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. . .
T Consensus 2 ~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence 689999999998654 8999999999999999999999999999999999999 9999 8999976421 1 1
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee---------c-------------cCC-ccCCCCCCCceeccccceEEE
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA---------P-------------SFD-HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~---------~-------------~~~-~~~~~~~~~~LSgGekqRv~I 205 (287)
.+.++.+.++...+ +++.+|+.+...... . .+. ....++.+..|||||+|||+|
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 23345555554332 588888876421100 0 000 012356789999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 8999999999 45555655543 35799999999875 443 7777788777653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-29 Score=220.61 Aligned_cols=173 Identities=18% Similarity=0.234 Sum_probs=127.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~ 152 (287)
|+++||++.|++.. +|+|+||++.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998655 9999999999999999999999999999999999999 9999 8899865421 112
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceeec-----------cCC--ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-----------SFD--HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-----------~~~--~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
...+.+.++... .+++.+|+.+....... .+. ....++.+.+|||||+||++| .+|+++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 234445554432 25788888653211100 010 113467889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|||| .+++.|.++.+ ..|++|||++++.. +++ |++++.|+++++..
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~ 221 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDE 221 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcCh
Confidence 9999 45556665543 24699999999875 444 77777888777633
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-29 Score=225.61 Aligned_cols=174 Identities=17% Similarity=0.256 Sum_probs=128.9
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
||+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence 488999999995 333 8999999999999999999999999999999999999 9999 8999976521 1
Q ss_pred hhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
.....+.+.+|... ..++.+|+.+...... . .+. ....++.+..||+||+|||.| .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 22334555555432 1588899876432110 0 000 012367889999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+++.+.++.+ .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999 45566665543 24699999999854 443 77777888777643
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-29 Score=221.63 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=128.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
+.+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence 34799999999998755 9999999999999999999999999999999999998 7 489 899997653
Q ss_pred -----HHhhhCCCCCCCChhHH---HHHHHHHhcCCceee----------------ccCC-----ccCCCCCCCceeccc
Q 023106 149 -----EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA----------------PSFD-----HGVGDPVEDDILVGL 199 (287)
Q Consensus 149 -----~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~----------------~~~~-----~~~~~~~~~~LSgGe 199 (287)
....+..+.+.+|...+ .++.+|+.+...... ..+. ....++.+..|||||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQ 154 (253)
T ss_pred ccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHH
Confidence 11223345555554332 578888865321100 0010 012356788999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
+||++| .+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999988 8999999999 44555555543 35799999998765 443 77778888777
Q ss_pred HH
Q 023106 255 VA 256 (287)
Q Consensus 255 ~~ 256 (287)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 64
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-29 Score=226.09 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=130.6
Q ss_pred ccEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
|.+|+++||++.|+ ... +|+|+||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~~~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred CceEEEEEEEEEeCCCCc----eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 56799999999995 333 8999999999999999999999999999999999999 9999 8999975421
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
......+++.++... ..++.+|+.+...... . .+. ....++.+..|||||+||+.|
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred HHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 112233445554421 2588888865321100 0 000 112367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.+.++.. .+|++|||++++.. |++ |++++.|+++++..
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 8999999999 45555555533 24699999999875 544 78888898888753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-29 Score=221.37 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=127.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++|+++.|++.. +|+|+||++.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 488999999998655 8999999999999999999999999999999999999 9999 8999976431 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCc-eeec--------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGS-VYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~-~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|... ..++.+|+.+... .... .+. ....++.+..||+||+||++| .
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 22334555555432 2588888865421 0000 000 012357788999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|++.++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999 44555555432 24799999999865 443 7777788777654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-29 Score=223.14 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=122.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... +.
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~--~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEA--RE 81 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHh--hC
Confidence 4699999999998765 9999999999999999999999999999999999999 9999 88888765332 22
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCcee-e-------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVY-A-------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~-~-------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
.+.+.+|... ..++.+|+.+..... . ..+. ....++.+.+|||||||||+| .+|+++||||
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3444444432 258888887642110 0 0011 112357789999999999988 8999999999
Q ss_pred ---------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 216 ---------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 216 ---------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
.+.+.|.++.. .+|++|||++++.. +++ |+++..|+
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 34555555422 24799999998765 443 55555443
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-29 Score=228.40 Aligned_cols=178 Identities=15% Similarity=0.198 Sum_probs=130.7
Q ss_pred cEEEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 76 PVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
++|+++||++.|++.. ....+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++| |.++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccccc
Confidence 5799999999997421 11238999999999999999999999999999999999999 9999 8899865321
Q ss_pred ---------------HhhhCCCCCCCChhH--H--HHHHHHHhcCCcee-ec-------------cCC--ccCCCCCCCc
Q 023106 150 ---------------AHARRGAPWTFNPLL--L--LNCLKNLRNQGSVY-AP-------------SFD--HGVGDPVEDD 194 (287)
Q Consensus 150 ---------------~~~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~-~~-------------~~~--~~~~~~~~~~ 194 (287)
...+..+++++|... + .++.+|+.++.... .. .+. ....++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 176 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 122334556666431 1 58899987652110 00 011 1124678899
Q ss_pred eeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhc
Q 023106 195 ILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 195 LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
|||||+|||+| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999998 8999999999 44555555432 24699999998765 544 88888
Q ss_pred CCCcHHHH
Q 023106 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~~~~ 256 (287)
.|+++++.
T Consensus 257 ~g~~~~~~ 264 (320)
T PRK13631 257 TGTPYEIF 264 (320)
T ss_pred eCCHHHHh
Confidence 89888764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-29 Score=224.32 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=132.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ...+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHHH
Confidence 699999999996421 1238999999999999999999999999999999999999 9999 9999976532 122
Q ss_pred hCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+..+++.+|... + .++.+|+.++..... . .+. ....++.+.+|||||+||++| .+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 334667777542 1 589999987532110 0 000 112367889999999999998 999
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++||||| .+++.+.++.+ .+|++|||++.+.. |++ |+++..|+++++..
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999 45556665543 24699999999853 443 77777888877653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-29 Score=219.71 Aligned_cols=172 Identities=18% Similarity=0.240 Sum_probs=125.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------- 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------- 148 (287)
+|+++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 689999999998755 9999999999999999999999999999999999999 9999 899997541
Q ss_pred --HHhhhCCCCCCCChhHH---HHHHHHHhcCC-cee-e-------------ccCC-ccCCCCCCCceeccccceEEE--
Q 023106 149 --EAHARRGAPWTFNPLLL---LNCLKNLRNQG-SVY-A-------------PSFD-HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 149 --~~~~~~~~~~~~~~~~~---~tv~e~l~~~~-~~~-~-------------~~~~-~~~~~~~~~~LSgGekqRv~I-- 205 (287)
....+.++.+.+|...+ +++.+|+.+.. ... . ..+. ....++.+..|||||+||++|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 154 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154 (242)
T ss_pred hhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 11223345555554432 57888875311 000 0 0010 112367789999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|+++|||| .+++.+.++.+ .++++|||.+++.. |++ |++++.|+++++
T Consensus 155 al~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 8999999999 34455554432 24699999999865 443 677777776654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-29 Score=234.52 Aligned_cols=166 Identities=19% Similarity=0.289 Sum_probs=125.5
Q ss_pred hhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H--hhhCCC
Q 023106 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A--HARRGA 156 (287)
Q Consensus 85 ~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~--~~~~~~ 156 (287)
|.|+++. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. . .+++.+
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4576665 8999999999999999999999999999999999999 9999 9999976432 1 114456
Q ss_pred CCCCChhHH---HHHHHHHhcCCceeec-c-------------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 157 PWTFNPLLL---LNCLKNLRNQGSVYAP-S-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 157 ~~~~~~~~~---~tv~e~l~~~~~~~~~-~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+++|...+ +|+.+|+.++...... . +. ....++++.+|||||||||+| .+|++|||
T Consensus 74 ~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred EEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 667766543 6899999875322110 0 00 113468899999999999988 99999999
Q ss_pred ec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 214 DG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 214 DE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|| .+.+.+.++. . .+||+|||++++.. |++ |+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99 4455555443 2 35799999999876 444 78888898888753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-28 Score=221.02 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=129.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 10 ~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 10 TTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred ceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence 4799999999998655 9999999999999999999999999999999999999 9999 8999976532 11
Q ss_pred hhCCCCCCCChhH---HHHHHHHHhcCCceee-----c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-----P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-----~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.+..+.+.+|... .+++.+|+.+...... . .+. ....++.+.+|||||+|||+|
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 2233455555422 2588888876421100 0 000 012367889999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 8999999999 44556665532 24699999998875 443 7877788877664
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-29 Score=226.03 Aligned_cols=175 Identities=19% Similarity=0.250 Sum_probs=131.4
Q ss_pred cEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----
Q 023106 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----- 148 (287)
Q Consensus 76 ~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----- 148 (287)
++|+++||++.|+ +.. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence 3799999999996 344 8999999999999999999999999999999999999 9999 999997652
Q ss_pred HHhhhCCCCCCCChh--H--HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 149 EAHARRGAPWTFNPL--L--LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~--~--~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
....+..+++.+|.. . ..++.+|+.++..... + .+. ....++.+..|||||+||++|
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 112233455555543 1 2588999876321110 0 000 113467899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. .++++|||++++.. |++ |++++.|+++++..
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 34555655543 24699999999875 544 78888898887654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-29 Score=218.87 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=115.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... .....
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46899999998765 8999999999999999999999999999999999999 9999 88998765321 11223
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|+++|
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4455554332 578888865421110 0000 012367789999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.+ .+|++|||++++..
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999 45566665532 24799999998764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-28 Score=221.84 Aligned_cols=179 Identities=13% Similarity=0.178 Sum_probs=128.1
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc-c-CCCcc-eeeCCCCHHH-
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKA-SSFDSQDPKE- 149 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~-~-~p~~G-i~~~g~~~~~- 149 (287)
..++|+++|+++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|++.. . .|++| +.++|.++..
T Consensus 18 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred CCceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 445899999999998755 99999999999999999999999999999999998520 0 15789 8899876532
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqRv 203 (287)
...+.++.+.+|...+ .++.+|+.+...... ..+.. ...++.+.+|||||+||+
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 1223345555554322 477888765321100 00000 123567899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 88 8999999999 45555555533 34699999998865 444 7777788877663
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-29 Score=228.58 Aligned_cols=167 Identities=21% Similarity=0.342 Sum_probs=122.4
Q ss_pred hhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhCCCCCCCC
Q 023106 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARRGAPWTFN 161 (287)
Q Consensus 85 ~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~~~~~~~~ 161 (287)
|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+..+++.+|
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 3566554 8999999999999999999999999999999999999 9999 8999976522 111223444444
Q ss_pred hhH---HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec---
Q 023106 162 PLL---LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 162 ~~~---~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
... .+++.+|+.+....... .+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 432 26888888764221100 011 112367889999999999988 8999999999
Q ss_pred --------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 216 --------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 216 --------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
.+++.|.++.+ .++++|||++++.. |++ |+++..|+++++...
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 45666666543 24699999999876 443 788888888887543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-29 Score=218.97 Aligned_cols=161 Identities=20% Similarity=0.299 Sum_probs=116.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
||+++||++.|++......+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 47899999999865111128999999999999999999999999999999999999 9999 8899876532 1112
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 334455554322 578888765321110 0000 012356888999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
||||| .+++.|.++.+ .+|++|||++++..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999 45555555532 24699999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-29 Score=221.64 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=128.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
+++|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 56899999999998655 8999999999999999999999999999999999987 5 689 889987642
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-e-------------ccCC-----ccCCCCCCCceeccccce
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-A-------------PSFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~-------------~~~~-----~~~~~~~~~~LSgGekqR 202 (287)
. ...+.++.+.+|...+ .++.+|+.+..... . ..+. ....++.+..|||||+||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 1 1223345555544321 57888887532110 0 0010 012356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 998 8999999999 45555555533 24699999999875 443 7777788877763
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-29 Score=220.42 Aligned_cols=174 Identities=22% Similarity=0.257 Sum_probs=126.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~ 153 (287)
+|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ...
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 478999999998655 8999999999999999999999999999999999999 9999 88998764321 111
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+.+.+|... ..++.+|+.+...... ..+. ....++.+..|||||+||++| .+|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23444444322 2577888765322110 0010 012356788999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999 45566665542 24699999999864 333 67667777766644
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-28 Score=235.67 Aligned_cols=179 Identities=19% Similarity=0.299 Sum_probs=133.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----cc-eeeCCCCHHH-
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KA-SSFDSQDPKE- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~----~G-i~~~g~~~~~- 149 (287)
++|+++||++.|........+++||||+|.+||++||+|.|||||||+++.|.|+++ +. +| |.++|.++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 379999999999765434569999999999999999999999999999999999998 55 68 9999986422
Q ss_pred ----HhhhC--CCCCCCChhH-----HHHHHHHHhcCCceee-----------------ccCCcc-CCCCCCCceecccc
Q 023106 150 ----AHARR--GAPWTFNPLL-----LLNCLKNLRNQGSVYA-----------------PSFDHG-VGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ----~~~~~--~~~~~~~~~~-----~~tv~e~l~~~~~~~~-----------------~~~~~~-~~~~~~~~LSgGek 200 (287)
.+..+ .+.+.||.+. .+++-+.+......+. -..... ..+++|++||||||
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 12222 3666777642 2444444433111111 011111 11579999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||.| .+|++||+|| ++++.|+++.++ .+|||||+..+.+ |++ |++++.|+++
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 99988 9999999999 567777766643 4799999999998 665 8999999999
Q ss_pred HHHH
Q 023106 254 DVAK 257 (287)
Q Consensus 254 ~~~~ 257 (287)
+++.
T Consensus 241 ~i~~ 244 (539)
T COG1123 241 EILS 244 (539)
T ss_pred HHHh
Confidence 9865
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-29 Score=217.66 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=115.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 46899999997655 9999999999999999999999999999999999999 9999 99999865321 11223
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceee----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYA----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.+.+|... ..++.+|+.+...... ..+. ....++.+.+|||||+|||+| .+|+++||||
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 444444432 2688888865421110 0010 012356788999999999988 8999999999
Q ss_pred ----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.+.++.. ..|++|||++++..
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 44555555432 24699999998864
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-29 Score=235.71 Aligned_cols=172 Identities=19% Similarity=0.295 Sum_probs=124.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H-
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A- 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~- 150 (287)
++++++.+.|+... +|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 29 ~~~~~~~~~~~~~~----~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~ 101 (400)
T PRK10070 29 LSKEQILEKTGLSL----GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELR 101 (400)
T ss_pred ccHHHHHhhcCCeE----EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHH
Confidence 44444555554333 7999999999999999999999999999999999999 9999 8999976421 1
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+..+.+.+|...+ +++.+|+.++..... . .+. ....++++.+|||||||||+| .
T Consensus 102 ~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~ 181 (400)
T PRK10070 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI 181 (400)
T ss_pred HHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhc
Confidence 112345666665432 688999876432110 0 010 113467899999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 182 ~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 182 NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999 45555655432 24799999999876 444 7777788877764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-28 Score=213.17 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=116.2
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++|+++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 488999999994 444 8999999999999999999999999999999999999 9999 8899876421
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCCc-cCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFDH-GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~~-~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+.+|||||+|||+|
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1123345555555432 578888775421100 00110 12356788999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++|||| .+++.|+++.+ .++++|||++++..
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 8999999999 45555655432 24699999998864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-28 Score=218.37 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=126.9
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
|++|+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 45799999999998655 8999999999999999999999999999999999987 6 488 889987542
Q ss_pred H----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCC-----ccCCCCCCCceeccccce
Q 023106 149 E----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ~----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
. ...+.++.+.+|...+ .++.+|+.+...... . .+. ....++.+.+|||||+||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHH
Confidence 1 1223345555554322 578888875421110 0 000 012346788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|+++|||| .+++.|.++.. .+|++||+++++.. |++ |++++.|+++++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 998 8999999999 34455555433 35799999999876 443 777778877665
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-28 Score=219.66 Aligned_cols=175 Identities=15% Similarity=0.224 Sum_probs=131.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
.+|+++||+++|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 4799999999998755 9999999999999999999999999999999999999 9999 8899986532 11
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee------c------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA------P------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~------~------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
....+.+.++...+ .++.+|+.+...... . .+. ....++.+..|||||+||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence 22335555554332 578888875421000 0 000 012367899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 8999999999 45566666543 24799999998876 443 77778888877643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-28 Score=214.22 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=117.0
Q ss_pred EEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++|+++.| ++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 48899999999 5444 8999999999999999999999999999999999999 9999 8899976532
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++|
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH
Confidence 1123345555554332 588888876421110 0000 012356889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++|||| .+++.|.++.+ ..+++|||++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 8999999999 35555555533 24699999999875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-29 Score=217.30 Aligned_cols=161 Identities=17% Similarity=0.269 Sum_probs=116.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
+|+++||++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999764100128999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH-----HHHHHHHHhcCCcee---------e-------ccCCc--cCCCCCCCceeccccceEEE-
Q 023106 150 AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY---------A-------PSFDH--GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~---------~-------~~~~~--~~~~~~~~~LSgGekqRv~I- 205 (287)
...+..+.+.+|... .+++.+|+.+..... . ..+.- ...++.+..|||||+|||+|
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 122334555555431 157777775421100 0 01111 12356789999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|.++.. .+|++|||++.+..
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 8999999999 45555655542 24699999998864
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-28 Score=219.94 Aligned_cols=172 Identities=21% Similarity=0.316 Sum_probs=128.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~ 151 (287)
+|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 5 LLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred eEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHHH
Confidence 699999999998655 9999999999999999999999999999999999999 9999 8899975421 12
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCce----------ee-c------------------cCC-ccCCCCCCCceecc
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSV----------YA-P------------------SFD-HGVGDPVEDDILVG 198 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~----------~~-~------------------~~~-~~~~~~~~~~LSgG 198 (287)
.+.++.+.++...+ +++.+|+.++... .. + .+. ....++.+.+||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 23344444554332 6888888764210 00 0 000 01235788899999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|+||++| .+|++||||| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 9999988 8999999999 45555655532 24699999999876 443 77777887
Q ss_pred cHHH
Q 023106 252 PPDV 255 (287)
Q Consensus 252 ~~~~ 255 (287)
++++
T Consensus 238 ~~~~ 241 (255)
T PRK11300 238 PEEI 241 (255)
T ss_pred HHHH
Confidence 7765
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-29 Score=220.84 Aligned_cols=173 Identities=15% Similarity=0.206 Sum_probs=127.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
+|+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 5 KLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred cEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEccccccccc
Confidence 599999999998755 8999999999999999999999999999999999999 9999 8899975421
Q ss_pred ----------HhhhCCCCCCCChhHH---HHHHHHHhcCCc----ee-----------eccCCc--cCCCCCCCceeccc
Q 023106 150 ----------AHARRGAPWTFNPLLL---LNCLKNLRNQGS----VY-----------APSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 150 ----------~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----~~-----------~~~~~~--~~~~~~~~~LSgGe 199 (287)
...+..+.+.+|...+ .++.+|+.++.. .. ...+.- ...++.+.+|||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 1223345555554332 578888764210 00 001111 11256789999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
+||++| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999988 8999999999 44555555533 24799999999875 444 7777788877
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 238 ~~~ 240 (257)
T PRK10619 238 QLF 240 (257)
T ss_pred Hhh
Confidence 664
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-28 Score=219.41 Aligned_cols=175 Identities=16% Similarity=0.242 Sum_probs=127.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
|++|+++||++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 45799999999998655 8999999999999999999999999999999999986 4 789 889997643
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCCc-----cCCCCCCCceeccccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFDH-----GVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~~-----~~~~~~~~~LSgGekq 201 (287)
. ...+..+.+.+|...+ .++.+|+.+...... . .+.. ...++.+..|||||+|
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQ 153 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHH
Confidence 1 1122334444443221 577888865321100 0 0000 1135678899999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++| .+|+++|||| .+++.|.++.. .++++|||++.+.. |++ |+++..|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9988 8999999999 44555555433 24699999998765 443 7777888877764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-29 Score=223.88 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=131.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++||++.|++.. ..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 3799999999996421 128999999999999999999999999999999999999 9999 9999976532 12
Q ss_pred hhCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+.+.+|... + .++.+|+.++..... . .+. ....++.+..|||||+|||+| .+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2334666666542 1 589999976422110 0 000 113467889999999999988 99
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .++++|||++++.. |++ |++++.|+++++.
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 99999999 45666666543 24699999999865 443 7777788877764
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-28 Score=210.77 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=120.6
Q ss_pred ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHH
Q 023106 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 93 ~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~ 171 (287)
..++|+||||++++||.+||||+||||||||+|+|+|.++ |++| +.+.|.-.... . +..-|+.. +|..||
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~li--~--lg~Gf~pe--lTGreN 109 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPLI--E--LGAGFDPE--LTGREN 109 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehhh--h--cccCCCcc--cchHHH
Confidence 4569999999999999999999999999999999999999 9999 88888643211 1 22333333 677788
Q ss_pred HhcCCceeecc-------------CC--ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 172 LRNQGSVYAPS-------------FD--HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 172 l~~~~~~~~~~-------------~~--~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
+.+...+.... |. ....+.++..+|-||+.|+++ .+|++||+|| ...+.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 77643332111 11 123477899999999999887 9999999999 33444
Q ss_pred HHhcc---CCeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHHHHH
Q 023106 221 VSSMF---DEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 221 l~~~~---~~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~~~~ 261 (287)
+.++. ...|+||||++.+.+ |++ |++...|.+++++..|..
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 54442 235799999999987 555 888889999999877644
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-28 Score=219.44 Aligned_cols=178 Identities=11% Similarity=0.139 Sum_probs=127.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
+++|+++|+++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++. .++++| +.++|.++..
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 45799999999998655 89999999999999999999999999999999999860 011588 8899986531
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.+....... .+.- ...++.+.+|||||+||++
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred cCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 1222344555544221 4778887653211100 0000 1235678899999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+++.|.++.. ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8 8999999999 34555555433 24799999998876 443 7888888888764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-28 Score=212.19 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=114.6
Q ss_pred EecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 79 ~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+++|+++.|++ .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36889999976 44 8999999999999999999999999999999999999 9999 8899875421 122
Q ss_pred hCCCCCCCChhH----HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLL----LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~----~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+..+.+.+|... ..++.+|+.+...... ..+. ....++.+..|||||+|||+| .+|
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 234555555431 2578888865321100 0011 012357889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999 45566665543 25799999998864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-28 Score=218.78 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=126.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
-|+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|++... .|++| +.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 35799999999998654 899999999999999999999999999999999986310 14789 8899976531
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.++..... ..+.- ...++.+..|||||+|||+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 1122334444443221 477888865321100 00000 1135678899999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 45555555533 35699999999865 443 7777788776653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-28 Score=212.76 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=114.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++.. +++++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... .+..+
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~-~~~~i 72 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIA-ARNRI 72 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHH-HHccE
Confidence 46899999997655 8999999999999999999999999999999999999 9999 89999876432 22334
Q ss_pred CCCCChhH---HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 157 PWTFNPLL---LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 157 ~~~~~~~~---~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+.+|... ..++.+|+.+....... .+. ....++.+.+|||||+||++| .+|+++||
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lll 152 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44444332 25778887653211100 000 012356788999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.+.++.+ .++++|||.+++..
T Consensus 153 DEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99 44555555432 24699999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-28 Score=212.15 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=116.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++......
T Consensus 9 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS 81 (214)
T ss_pred cceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence 35799999999998765 8999999999999999999999999999999999999 9999 89999765322122
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCceee-----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVYA-----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~~-----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
..+.+.++...+ .++.+|+.+...... ..+. ....++.+..||+||+||++| .+|+++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233444443221 477777754311100 0011 112367789999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.+.++.+ ..|++|||++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 99 34444444422 24799999998875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-28 Score=223.12 Aligned_cols=179 Identities=16% Similarity=0.238 Sum_probs=131.9
Q ss_pred cEEEecCchhhhhhhhh--ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~--~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
+||+++|++++|++... ...+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 37999999999964210 1239999999999999999999999999999999999999 9999 9999976532
Q ss_pred -HhhhCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 -AHARRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
...+..+++.+|... + .++.+++.++..... . .+. ....++.+.+|||||+|||+|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 122344556666532 1 467888876432110 0 000 112367899999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .++++|||++++.. |++ |+++..|+++++..
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 8999999999 45566665532 24799999999865 444 77788888887753
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-29 Score=231.42 Aligned_cols=171 Identities=18% Similarity=0.243 Sum_probs=127.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
||++ ||+|.|++.. + |+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~-~l~k~~~~~~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4788 8999998642 3 8999999999999999999999999999999999 9999 8899876432
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
...++.+.+.+|...+ +++.+|+.++..... ..+. ....++.+.+|||||||||+| .+|+++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 1123345566665433 689999986532110 0011 123467899999999999999 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|||| .+++.|.++.+ ..|++|||++++.. |++ |+++..|+++++..
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999 44555555543 25799999998876 444 78888888888753
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-28 Score=220.00 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=127.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
.++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ | ++| |.++|.++.
T Consensus 17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEECc
Confidence 45799999999998755 8999999999999999999999999999999999987 5 789 899997653
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c-------------cCCc-----cCCCCCCCceecccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P-------------SFDH-----GVGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~-------------~~~~-----~~~~~~~~~LSgGek 200 (287)
. ...+..+++.+|...+ .++.+|+.+...... . .+.- ...++.+.+|||||+
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 1 1223344555544321 378888865321100 0 0000 012457889999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|||+| .+|++||||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|+++++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99988 8999999999 34555555433 34799999999865 443 777778877766
Q ss_pred H
Q 023106 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 250 ~ 250 (267)
T PRK14235 250 F 250 (267)
T ss_pred H
Confidence 4
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-28 Score=215.97 Aligned_cols=162 Identities=13% Similarity=0.165 Sum_probs=117.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---- 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---- 150 (287)
++|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999742111238999999999999999999999999999999999999 9999 89999764211
Q ss_pred ---hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE----
Q 023106 151 ---HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ---~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.++..+.+.+|...+ +++.+|+.+...... ..+. ....++.+.+||||||||++|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 112345555555332 578888865321100 0000 012356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 8999999999 45566666532 24799999999765
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-28 Score=218.56 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=126.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~--- 149 (287)
.+|+++||++.|++.. +++|+||+|.+|+++||+||||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 2 GKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred CeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4689999999998755 89999999999999999999999999999999998750 011689 8999976532
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCCc-----cCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFDH-----GVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~~-----~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|...+ .++.+|+.+....... .+.. ...++.+.+|||||+||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 1122334444444322 5788888764211100 0000 11256788999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 44555555432 24799999998866 443 7777778776653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-28 Score=216.15 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=127.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|+... ..+|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 46899999996411 128999999999999999999999999999999999999 9999 8999986532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-cc-------CC------------ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-PS-------FD------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~~-------~~------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.+|...+ .++.+|+.+...... .. .. ....++.+.+|||||||||+| .
T Consensus 76 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 76 RQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred hcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 334555554332 588899876432100 00 00 001245789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
+|+++|||| .+++.|.++... +|++|||++++.. +++ |++++.|+++++...
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999 455566655432 4699999999854 333 677778887776544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-28 Score=235.06 Aligned_cols=193 Identities=18% Similarity=0.152 Sum_probs=136.3
Q ss_pred chhhhhcCcCcCcc--cCccch-hhhhhhh---hhhhh------------hc-CCCccEEEecCchhhhhhh-hhccccc
Q 023106 38 SFSWIRRNANAQPV--FGKTRS-LVQNKTS---LKVLC------------SQ-RREIPVVEARCMDEVYDAL-AQRLLPT 97 (287)
Q Consensus 38 ~~~~~~r~~~~~~~--~~~~r~-~~~~~~~---~~~~~------------~~-~~~~~~i~~~~l~~~y~~~-~~~~~~l 97 (287)
.++|++|+.+++.+ ++++|. +++++.. ..... .. ..+..+++++|+++.|++. . ++
T Consensus 263 ~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~----l~ 338 (530)
T COG0488 263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRL----LL 338 (530)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCce----ee
Confidence 56999997766555 666664 3333321 00000 00 1234589999999999764 4 89
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCc
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 177 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 177 (287)
+++||.|.+|++|||+||||+|||||+|+|+|.+. |.+|.+..|..+...++.+.....+.. .++++++.....
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v~igyf~Q~~~~l~~~---~t~~d~l~~~~~ 412 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETVKIGYFDQHRDELDPD---KTVLEELSEGFP 412 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCceEEEEEEehhhhcCcc---CcHHHHHHhhCc
Confidence 99999999999999999999999999999999999 999966667666555555543222211 255555554331
Q ss_pred ----------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------chHHHHHh---ccCC-eEEE
Q 023106 178 ----------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------GVWKDVSS---MFDE-KWFI 231 (287)
Q Consensus 178 ----------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~~~~~l~~---~~~~-~i~v 231 (287)
+....|......+.+..||||||.|+.+ .+||+||||| +.++.|.+ -++. +|+|
T Consensus 413 ~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~V 492 (530)
T COG0488 413 DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLV 492 (530)
T ss_pred cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEE
Confidence 1234566667788999999999999887 8999999999 33333333 3444 5799
Q ss_pred EcChHHHHH
Q 023106 232 EVDLDTAMQ 240 (287)
Q Consensus 232 tHd~~~~~~ 240 (287)
|||+.++..
T Consensus 493 SHDr~Fl~~ 501 (530)
T COG0488 493 SHDRYFLDR 501 (530)
T ss_pred eCCHHHHHh
Confidence 999999975
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-28 Score=218.04 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=127.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
++|+++|+++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 3 IKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred cEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEeccc
Confidence 4799999999998655 8999999999999999999999999999999999987 5 689 8999976531
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|...+ .++.+|+.+....... .+. ....++.+..||+||+||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1223334444443321 5788888754211100 000 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 988 8999999999 44555555433 35799999998865 444 7888888887764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-28 Score=239.03 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=131.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 9 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 9 PPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPA 81 (510)
T ss_pred CceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 34799999999998765 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhH---HHHHHHHHhcCCceee----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
...+.++++.+|... .+++.+|+.++..... ..+. ....++.+.+|||||||||+| .+|++
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 112234555555432 2688899876532110 0011 113367889999999999998 89999
Q ss_pred EeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999 45555655533 24699999999876 444 7777788877664
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-28 Score=238.23 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=130.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
+||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 3699999999998755 8999999999999999999999999999999999999 9999 8899875421 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceee--cc----------------CC-ccCCCCCCCceeccccceEEE---
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--PS----------------FD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~~----------------~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
..+..+.+.+|...+ +++.+|+.++..... .. +. ....++.+.+|||||||||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 123445666665432 689999887532110 00 00 012367889999999999988
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 8999999999 44555555433 24799999999876 444 777777777655
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-29 Score=215.67 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=113.6
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~ 154 (287)
|+++|+++.|++.. +++|+||++++| +++|+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 47899999997655 899999999999 999999999999999999999999 9999 89999765321 1123
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.+.+|...+ +++.+|+.+...... . .+. ....++.+.+|||||+|||+| .+|+++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 152 (211)
T cd03264 73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152 (211)
T ss_pred heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 34444444322 577888765321110 0 000 012356889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
|||| .+++.|.++.+ ..|++|||++++..
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 9999 34555555433 24699999998864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-28 Score=218.93 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=115.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.... ..
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~--~~ 71 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPG--AE 71 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCC--Cc
Confidence 488999999998755 8999999999999999999999999999999999999 9999 889987653211 11
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|... ..++.+|+.+...... . .+. ....++.+..|||||+|||+| .+|++||
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 233344322 2577888765321100 0 000 012356789999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.. .+|++|||++++..
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999 45566665522 24799999998865
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-28 Score=214.36 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=124.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+++++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 46899999997641 128999999999999999999999999999999999999 9999 8999976532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-c---------cCC----------ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-P---------SFD----------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~---------~~~----------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.++...+ .++.+|+.+...... . ... ....++.+..||+||+||+.| .
T Consensus 76 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 76 RQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred hhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 334444444322 588899876532110 0 000 011245688999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+++.|.++.+. .|++|||++++.. +++ |++++.|+++++.
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHH
Confidence 999999999 455555555433 4699999999865 333 6666677766653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-29 Score=220.03 Aligned_cols=172 Identities=19% Similarity=0.264 Sum_probs=126.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------- 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------- 149 (287)
|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 47899999998655 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred ---------HhhhCCCCCCCChhHH---HHHHHHHhcCCc----eeec-----------cCC-ccCCCCCCCceeccccc
Q 023106 150 ---------AHARRGAPWTFNPLLL---LNCLKNLRNQGS----VYAP-----------SFD-HGVGDPVEDDILVGLQH 201 (287)
Q Consensus 150 ---------~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----~~~~-----------~~~-~~~~~~~~~~LSgGekq 201 (287)
...+..+.+.+|...+ .++.+|+.+... .... .+. ....++.+.+|||||+|
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 1123345555554332 578888865311 0000 000 01235678999999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
|++| .+|+++|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|+.++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9998 8999999999 45555655543 24799999999865 443 77777887776
Q ss_pred HH
Q 023106 255 VA 256 (287)
Q Consensus 255 ~~ 256 (287)
+.
T Consensus 234 ~~ 235 (252)
T TIGR03005 234 IF 235 (252)
T ss_pred Hh
Confidence 63
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-28 Score=221.23 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=127.8
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
.|+++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 4899999999975210 1238999999999999999999999999999999999999 9999 8899975421
Q ss_pred --HhhhCCCCCCCChh--HH--HHHHHHHhcCCceee--------------ccCCc--cCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPL--LL--LNCLKNLRNQGSVYA--------------PSFDH--GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~--~~--~tv~e~l~~~~~~~~--------------~~~~~--~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+.+.+|.. .+ .++.+|+.+...... ..+.- ...++.+.+|||||+||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 11233455555543 11 488888865321100 01111 12367789999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++..
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 34555555432 24699999998865 443 77777888777644
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-28 Score=213.77 Aligned_cols=158 Identities=20% Similarity=0.315 Sum_probs=113.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++......+|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ...+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~--~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGP--GPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccc--cCcE
Confidence 4689999999761100128999999999999999999999999999999999999 9999 88999765321 2234
Q ss_pred CCCCChhHH---HHHHHHHhcCCceee--------------ccCCc-cCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 157 PWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFDH-GVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 157 ~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~~-~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+||++| .+|+++||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 444443322 577788765321110 00110 12356789999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|| .+++.|.++.. .++++|||++++..
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 99 45566665532 24699999998754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-28 Score=217.35 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=128.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKE-- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~-- 149 (287)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 3799999999998765 8999999999999999999999999999999999998 76 48 8899976521
Q ss_pred ------HhhhCCCCCCCChhH---HHHHHHHHhcCCceee-------cc---------------CCc-cCCCCCCCceec
Q 023106 150 ------AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-------PS---------------FDH-GVGDPVEDDILV 197 (287)
Q Consensus 150 ------~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-------~~---------------~~~-~~~~~~~~~LSg 197 (287)
...+..+.+.++... .+++.+|+.+...... .. +.- ...++.+..||+
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 155 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCH
Confidence 112233555555432 2688899875421000 00 000 123678899999
Q ss_pred cccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 198 GLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 198 GekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
||+|||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999988 8999999999 45556666542 24799999998766 444 6777888
Q ss_pred CcHHH
Q 023106 251 KPPDV 255 (287)
Q Consensus 251 ~~~~~ 255 (287)
+++++
T Consensus 236 ~~~~~ 240 (262)
T PRK09984 236 SSQQF 240 (262)
T ss_pred CHHHh
Confidence 87765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-28 Score=240.21 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=141.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|+.... .+|+|+||+|++||++||+|+||||||||+|+|.|++. |++| |.+||.++... ..
T Consensus 471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 5999999999987531 48999999999999999999999999999999999999 9999 99999987542 34
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------------cCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------------SFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------------~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
++.++++.|+..+ -++.||+.++..... . .|+. .-......||||||||++|
T Consensus 546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t-~v~E~G~~LSGGQrQrlalARaL 624 (709)
T COG2274 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT-PVGEGGANLSGGQRQRLALARAL 624 (709)
T ss_pred HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccc-ccccCCCCCCHHHHHHHHHHHHh
Confidence 5567777777665 689999998644211 0 0111 1123456799999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhcc--CCeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~--~~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+.+.|.+.. ...|+|+|....+.. |++ |+++++|+.+++...
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999 4566677766 446899999999988 655 999999999998654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-28 Score=210.17 Aligned_cols=156 Identities=18% Similarity=0.258 Sum_probs=115.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----HHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK-----EAH 151 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~-----~~~ 151 (287)
|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 46899999998755 8999999999999999999999999999999999999 9999 889987542 112
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCc-eee--------------ccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGS-VYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~-~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+.+.++...+ .++.+|+.+... ... ..+. ....++.+.+|||||+||++| .+
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 74 LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred HHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 23445555554432 578888865321 000 0010 012367889999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999 44555555533 24699999998864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-28 Score=236.47 Aligned_cols=174 Identities=18% Similarity=0.235 Sum_probs=130.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 4799999999998765 8999999999999999999999999999999999999 9999 8899876421 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCce----eec-----------------cCC-ccCCCCCCCceeccccceEEE
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSV----YAP-----------------SFD-HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~----~~~-----------------~~~-~~~~~~~~~~LSgGekqRv~I 205 (287)
..+.++.+.+|...+ +++.+|+.++... ... .+. ....++.+.+|||||||||+|
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 123345666655332 6888998764311 000 000 012367889999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 8999999999 45555555543 24799999999876 444 7777788877653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-28 Score=217.30 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=125.6
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
|+++||++.|++ .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468899999986 44 8999999999999999999999999999999999999 9999 8899976422 112
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCCcc---CCCCCCCceeccccceEEE-----ec
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFDHG---VGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~~~---~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+..+.+.+|...+ .++.+|+.+...... ..+.-. ..++.+.+|||||+|||+| .+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 2345555554332 588888865421110 011111 2357789999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+++|||| .+++.|.++.+ .+|++|||.+.+.. +++ |++++.|+++++
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999 44555555532 24799999998765 443 677777776665
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-28 Score=217.32 Aligned_cols=178 Identities=13% Similarity=0.197 Sum_probs=127.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
.+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3799999999998755 899999999999999999999999999999999997610 13789 8899876421
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec-------------cCC-----ccCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------------SFD-----HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------------~~~-----~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+.+.+|...+ .++.+|+.+....... .+. ....++.+.+||+||||||+|
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 1222345555554322 4888998764321100 000 012356788999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH---------------HHHhcCCC
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL---------------KRHISTGK 251 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi---------------gr~i~~G~ 251 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~ 247 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNE 247 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCC
Confidence 8999999999 45555555533 24799999999876 332 24567888
Q ss_pred cHHHHH
Q 023106 252 PPDVAK 257 (287)
Q Consensus 252 ~~~~~~ 257 (287)
+.++..
T Consensus 248 ~~~~~~ 253 (269)
T PRK14259 248 TKKIFN 253 (269)
T ss_pred HHHHHh
Confidence 887754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-28 Score=212.73 Aligned_cols=160 Identities=15% Similarity=0.168 Sum_probs=115.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
+|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 37899999999642111238999999999999999999999999999999999999 9999 88999765321
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCcee---e-----------ccCC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVY---A-----------PSFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~---~-----------~~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+...+.+.+|...+ .++.+|+.+..... . ..+. ....++.+..|||||+|||+|
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 111334555554322 57888886531110 0 0000 012357889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK 206 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 8999999999 45556655532 2479999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-28 Score=237.06 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=130.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~~~g~~~~~--- 149 (287)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 4 ~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI 76 (506)
T ss_pred ceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 4799999999998755 9999999999999999999999999999999999998 7 789 8899976421
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCceee----c-------------cCC-ccCCCCCCCceeccccceEEE--
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA----P-------------SFD-HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~----~-------------~~~-~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+.++++.+|...+ +++.+|+.++..... . .+. ....++.+.+|||||||||+|
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 1123445666665432 688999877532210 0 000 113367889999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 8999999999 45555655533 24799999999876 444 777777877665
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-28 Score=217.07 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=126.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh---cccCC--Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI---NKIWP--QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll---~~~~p--~~G-i~~~g~~~~~ 149 (287)
++|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+. + | ++| +.++|.++..
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 4799999999998755 899999999999999999999999999999999973 4 4 478 8899986532
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---------------ccCCc-----cCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------PSFDH-----GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------~~~~~-----~~~~~~~~~LSgGekqR 202 (287)
...+.++.+.+|...+ .++.+|+.++..... ..+.- ...++.+.+|||||+||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 1223345555544322 477788765321100 00100 12346788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++| .+|+++|||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 988 8999999999 44555555533 25799999999865 544 78888888887743
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-28 Score=217.21 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=126.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCC---Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p---~~G-i~~~g~~~~~ 149 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|++ . | ++| +.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 4799999999998655 899999999999999999999999999999999984 4 5 489 8899976521
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+. ....++.+.+||+||+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 1122344555544322 578888865321100 0 000 012356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|+| .+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 988 8999999999 44555555432 35799999998765 444 7777888877764
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-28 Score=202.73 Aligned_cols=173 Identities=21% Similarity=0.262 Sum_probs=137.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC-CCH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS-QDP----KE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g-~~~----~~ 149 (287)
++++++||+.+|++.. +|+++||++.+|+.-+|||||||||||++..|+|.-+ |+.| ++++| .++ ..
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 3799999999999987 9999999999999999999999999999999999999 9999 88888 443 23
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC-------c----------------cCCCCCCCceeccccceE
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD-------H----------------GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~-------~----------------~~~~~~~~~LSgGekqRv 203 (287)
...+.|++-.||.+.+ +++++|+..........|. . ...++.+..||-||||++
T Consensus 77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh
Confidence 3556778777877654 7999999875443222111 0 133677889999999998
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.| ++|.+|++|| ..-+.+..+... +++|.|||.++.. ++. |.+.++|+.+++
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 87 9999999999 344555555543 5699999999987 322 788889988877
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-28 Score=219.34 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=124.3
Q ss_pred EEEecCchhhhhhhh-----hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-----~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~- 149 (287)
||+++||+++|++.. ....+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCC
Confidence 699999999996311 01238999999999999999999999999999999999999 9999 8899876431
Q ss_pred --HhhhCCCCCCCChhH-----HHHHHHHHhcCCcee----e-----------ccCC--ccCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY----A-----------PSFD--HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~----~-----------~~~~--~~~~~~~~~~LSgGekqRv~I 205 (287)
......+.+.+|... ..++.+++.+..... . ..+. ....++.+.+|||||+|||+|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 112223444444321 135555554321100 0 0011 112355788999999999998
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 161 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 8999999999 45555665532 24799999999875 443 6777778777664
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-28 Score=217.07 Aligned_cols=173 Identities=14% Similarity=0.220 Sum_probs=126.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~- 149 (287)
+|+++|+++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ | ++| |.++|.++..
T Consensus 4 ~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecccc
Confidence 699999999998755 9999999999999999999999999999999999987 5 689 8899976521
Q ss_pred ----HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--c-------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 ----AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--P-------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~-------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.++...+ .++.+|+.+...... . .+. ....++.+.+|||||+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1223345555554322 577888765321100 0 000 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----------HHHhcCCC
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHISTGK 251 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----------gr~i~~G~ 251 (287)
|+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 988 8999999999 34555555433 35799999999875 432 66777888
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
++++.
T Consensus 237 ~~~~~ 241 (258)
T PRK14241 237 TEKIF 241 (258)
T ss_pred HHHHH
Confidence 77764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-28 Score=215.47 Aligned_cols=176 Identities=14% Similarity=0.180 Sum_probs=126.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++...|++| +.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 589999999998655 89999999999999999999999999999999999741116889 8999986532 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCc-----cCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDH-----GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~-----~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+|||+|
T Consensus 78 ~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred hhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 3344555554322 588888865421110 00000 11346778999999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.|.++... ++++|||++++.. |++ |++++.|++.++.
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 8999999999 445555554332 4699999998875 443 7877888877663
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-28 Score=216.71 Aligned_cols=173 Identities=15% Similarity=0.189 Sum_probs=126.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~- 149 (287)
+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 699999999998655 9999999999999999999999999999999999987 64 78 8899876531
Q ss_pred ----HhhhCCCCCCCChhHH---HHHHHHHhcCCcee---ec------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 ----AHARRGAPWTFNPLLL---LNCLKNLRNQGSVY---AP------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~---~~------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+.++.+.+|...+ .++.+|+.+..... .. .+. ....++.+..|||||+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 1223345555554322 57778876431100 00 000 012356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++| .+|+++|||| .+.+.|+++.. ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 988 8999999999 34455555432 24799999999876 443 7777888877764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-28 Score=221.26 Aligned_cols=177 Identities=14% Similarity=0.158 Sum_probs=127.7
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------ 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------ 148 (287)
.|+++||++.|++... ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence 5899999999975310 1238999999999999999999999999999999999999 9999 888886542
Q ss_pred --HHhhhCCCCCCCChh----HHHHHHHHHhcCCceee--------------ccCC--ccCCCCCCCceeccccceEEE-
Q 023106 149 --EAHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA--------------PSFD--HGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 149 --~~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~--------------~~~~--~~~~~~~~~~LSgGekqRv~I- 205 (287)
....+..+.+.+|.. ...++.+|+.+...... ..+. ....++.+.+|||||+|||+|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 111223455555542 12588888875321100 0111 123367889999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 45555555532 24799999998865 443 7777788877654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-28 Score=216.83 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=128.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
..+|+++|+++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|++.. ..|++| +.++|.++..
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 34799999999998654 89999999999999999999999999999999999851 114789 8899876521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-e-c-------------cCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-A-P-------------SFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~-~-------------~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.+..... . . .+.. ...++.+.+|||||+||++
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 1123345555554322 58888887542111 0 0 0000 1135678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.. .+|++|||++.+.. |++ |++++.|+++++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 44555555533 24699999998865 444 7777888877764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-28 Score=220.45 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=129.8
Q ss_pred EEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
||+++||++.|++ .. +++++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 1 ILETRDLKYSYPDGTE----ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred CEEEEEEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchH
Confidence 4889999999963 33 8999999999999999999999999999999999999 9999 9999976521
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+++.+|... ..++.+|+.++...... .+. ....++.+.+|||||+||++|
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 112334556666531 15888888753211000 000 123467899999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 8999999999 45556665543 24799999999875 444 77788888887653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-28 Score=218.34 Aligned_cols=174 Identities=17% Similarity=0.140 Sum_probs=126.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------cc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~--------~G-i~~~g~~~ 147 (287)
||+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +| +.++|.++
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 489999999998765 9999999999999999999999999999999999998 87 88 88999765
Q ss_pred HH---HhhhCCCCCCCChhH---HHHHHHHHhcCCceee---cc---------------CC-ccCCCCCCCceeccccce
Q 023106 148 KE---AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---PS---------------FD-HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 148 ~~---~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---~~---------------~~-~~~~~~~~~~LSgGekqR 202 (287)
.. ...+..+.+.+|... .+++.+|+.+...... .. +. ....++.+.+|||||+||
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 153 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELAR 153 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 32 111222334444321 2688899876432110 00 00 012357889999999999
Q ss_pred EEE----e----------cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHH
Q 023106 203 VVI----V----------DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 203 v~I----~----------~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~ 246 (287)
|+| . +|++||||| .+++.|.++.. .+|++|||++++.. +++ |++
T Consensus 154 v~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 154 VQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 988 3 899999999 45555555432 24799999999865 443 777
Q ss_pred hcCCCcHHHHH
Q 023106 247 ISTGKPPDVAK 257 (287)
Q Consensus 247 i~~G~~~~~~~ 257 (287)
++.|+++++..
T Consensus 234 ~~~g~~~~~~~ 244 (272)
T PRK13547 234 VAHGAPADVLT 244 (272)
T ss_pred EEecCHHHHcC
Confidence 88888777643
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-28 Score=218.38 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=126.9
Q ss_pred EEEecCchhhhhhhh-----hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~-----~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~- 149 (287)
||+++||++.|++.. ....+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 689999999996310 01238999999999999999999999999999999999999 9999 8999976421
Q ss_pred -----HhhhCCCCCCCChhH-----HHHHHHHHhcCCc----eee-----------ccCC--ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLL-----LLNCLKNLRNQGS----VYA-----------PSFD--HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~----~~~-----------~~~~--~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.+|... ..++.+|+.+... ... ..+. ....++.+..|||||+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 112334555555431 1567777643211 000 0011 112356889999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+++.|.++.+ .+|++|||++.+.. +++ |++++.|+++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 988 8999999999 35566665532 24799999999875 443 777788888776
Q ss_pred H
Q 023106 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 239 ~ 239 (265)
T TIGR02769 239 L 239 (265)
T ss_pred c
Confidence 4
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-27 Score=210.06 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=123.3
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
|+++|+++.|++ .. +++|+||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 3 l~~~~l~~~~~~~~~----~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 3 IEFENVNFSYDEKKP----VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred EEEEEEEEecCCCCc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 789999999974 33 8999999999999999999999999999999999999 9999 88999776431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-cc---------CC----------ccCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-PS---------FD----------HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~~---------~~----------~~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.++...+ .++.+|+.+...... .. .. ....++.+.+|||||+|||.|
T Consensus 76 ~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 76 RSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred hhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 3334555554332 488888876532110 00 00 001134578999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~ 255 (287)
.+|+++|||| .+++.+.++... +|++||+++++.. +++ |++++.|+.+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 8999999999 455555555332 4699999998854 332 565556655544
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-28 Score=220.63 Aligned_cols=171 Identities=23% Similarity=0.320 Sum_probs=125.5
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA------- 150 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~------- 150 (287)
.++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 5779999998876 8999999999999999999999999999999999999 9999 88999764321
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.....+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+|||+| .+
T Consensus 99 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred hhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 112334455554322 578888865321100 0010 012367889999999999988 99
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.. .+|++|||++++.. +++ |++++.|+++++.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999 45555555532 24699999998765 443 6777778877664
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-28 Score=217.17 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=129.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
++|+++||++.|+++. +|+|+||++.+|+++||+||||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 19 ~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 19 IALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred eEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 3799999999997655 999999999999999999999999999999999998600 13789 8899976531
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-------c--------cCC-----ccCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------P--------SFD-----HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~--------~~~-----~~~~~~~~~~LSgGekqRv~I 205 (287)
...+.++.+.+|...+ .++.+|+.++..... . .+. ....++.+.+|||||+||++|
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 1223445555554332 588888876421100 0 000 012356789999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 44555555533 24799999998865 444 7888888887764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-28 Score=209.94 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=114.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.....+..
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 699999999998755 8999999999999999999999999999999999999 9999 8899876421112222
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceeec----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYAP----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.+.++... ..++.+|+.+....... .+. ....++.+.+|||||+||+.| .+|+++||||
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 333332221 25777777543211100 000 012356788999999999988 8999999999
Q ss_pred ----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..+++|||.+++..
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 45555555432 24699999998865
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-28 Score=209.46 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=115.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
||+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 488999999998755 8999999999999999999999999999999999999 9999 8899876432 1112
Q ss_pred CCCCCCCChh---HHHHHHHHHhcCCceee-----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA-----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~-----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
..+.+.++.. ..+++.+|+.+...... ..+. ....++.+..|||||+||++| .+|+++||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2233333322 12578888765432110 0010 012367889999999999988 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.|.++.+ ..|++|||++++..
T Consensus 154 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 154 DEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 99 44555555432 24799999998865
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-28 Score=217.58 Aligned_cols=174 Identities=17% Similarity=0.282 Sum_probs=125.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----HHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----PKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~~~ 149 (287)
++|+++||++.|+++. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.+ +..
T Consensus 5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 3799999999998755 8999999999999999999999999999999999999 9999 8899976 421
Q ss_pred ---Hh----hhCCCCCCCChhH-----HHHHHHHHhcC-----Cce----e------eccCCc--cCCCCCCCceecccc
Q 023106 150 ---AH----ARRGAPWTFNPLL-----LLNCLKNLRNQ-----GSV----Y------APSFDH--GVGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ---~~----~~~~~~~~~~~~~-----~~tv~e~l~~~-----~~~----~------~~~~~~--~~~~~~~~~LSgGek 200 (287)
.. .+.++.+.++... ..++.+|+.+. ... . ...+.. ...++.+.+|||||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 11 1233455554431 13445554321 000 0 001111 123578899999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.+.++.+ .+|++|||++++.. +++ |++++.|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99988 8999999999 44555555433 24699999999975 443 7777888877
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 238 ~~~ 240 (258)
T PRK11701 238 QVL 240 (258)
T ss_pred HHh
Confidence 764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-28 Score=210.06 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=114.9
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
|+++|+++.|++ .. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPNGTA----ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 468899999964 34 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
...+..+.+.+|...+ .++.+|+.+...... ..+. ....++.+.+|||||+||++| .
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 1123345555554432 578888875421100 0000 012356789999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|+++|||| .+++.|.++.+ ..|++|||++.+..
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999 45555555532 24699999998864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-28 Score=215.90 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=127.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 67899999998765 9999999999999999999999999999999999999 9999 8999976532 1112
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCce----ee-c-------------cCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSV----YA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~----~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.++... ..++.+|+.++... .. . .+. ....++.+..|||||+||++| .
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred hheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 23444444332 26888888764210 00 0 000 012367889999999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.|.++.+ .+|++|||++.+.. |++ |++++.|+.+++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999 34555555432 24699999999965 444 78888888777643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-28 Score=211.83 Aligned_cols=161 Identities=20% Similarity=0.213 Sum_probs=115.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
++|+++||++.|++......+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHHH
Confidence 479999999999752111128999999999999999999999999999999999999 9999 8899875421
Q ss_pred H--hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 A--HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 ~--~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
. ....++.+.+|...+ .++.+|+.+...... ..+. ....++.+..|||||+||+.|
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 1 112344555554332 578888765321100 0011 012356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 8999999999 45555655432 2469999999764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=201.15 Aligned_cols=138 Identities=16% Similarity=0.177 Sum_probs=107.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~ 154 (287)
|+++|+++.|++.. ..+++++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS 75 (178)
T ss_pred CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence 46889999997641 128999999999999999999999999999999999999 9999 88999865432 1223
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------c
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------G 216 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~ 216 (287)
.+.+.++...+ .++.+|+ +..||+||+||+.| .+|+++|||| .
T Consensus 76 ~i~~~~q~~~~~~~tv~~~i-------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~ 136 (178)
T cd03247 76 LISVLNQRPYLFDTTLRNNL-------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136 (178)
T ss_pred hEEEEccCCeeecccHHHhh-------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 34444443321 4666665 67899999999988 9999999999 4
Q ss_pred hHHHHHhccCC--eEEEEcChHHHH
Q 023106 217 VWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 217 ~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
+++.|.++... .+++|||++++.
T Consensus 137 l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 137 LLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHcCCCEEEEEecCHHHHH
Confidence 55555555332 469999999875
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-28 Score=229.54 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=127.5
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC----CHH-----HH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ----DPK-----EA 150 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~----~~~-----~~ 150 (287)
.++.+.|+... +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++| +.++|. ++. ..
T Consensus 28 ~~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l 100 (382)
T TIGR03415 28 EEILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATL 100 (382)
T ss_pred HHHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHH
Confidence 45778888766 8999999999999999999999999999999999999 9999 899985 321 11
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.++.++.+.||...+ .|+.+|+.++....... +. ....++++.+|||||+|||.|
T Consensus 101 ~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa 180 (382)
T TIGR03415 101 RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA 180 (382)
T ss_pred HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 122456666665543 68999998753211000 00 113367899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ ..||+|||++++.+ |++ |++++.|+++++.
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 8999999999 45555555533 25799999999876 444 7888899988875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-28 Score=213.89 Aligned_cols=171 Identities=20% Similarity=0.263 Sum_probs=125.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||+++||++.|++. ..++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ....
T Consensus 1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 48899999999753 238999999999999999999999999999999999 9999 89999865321 1123
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee--c------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA--P------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~--~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+.+.+|...+ +++.+|+.+...... . .+. ....++.+.+|||||+||+.| .+|+++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 34455554322 588899876421110 0 000 012367889999999999988 899999
Q ss_pred eEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|||| .+++.|.++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999 35556665532 24799999999865 443 7777788776664
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-28 Score=220.11 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=130.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc---c-eeeCCCCHHH---
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE--- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~---G-i~~~g~~~~~--- 149 (287)
+|+++|+++.|++.. ..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++ | +.++|.++..
T Consensus 5 ~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence 699999999996421 128999999999999999999999999999999999998 886 8 8899976532
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+++.+|... ..++.+|+.+...... . .+. ....++.+..|||||+||++|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 122334566666542 2588999876421110 0 000 112367899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|+++++..
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999 45566655542 24699999999854 443 78888888877643
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=230.74 Aligned_cols=178 Identities=20% Similarity=0.246 Sum_probs=136.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+|.|+.++ .+.+|+|+||+|++|+++|||||||+||||++++|..++. |++| |.+||.++.+. +.
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence 599999999998875 5669999999999999999999999999999999999999 9999 99999987653 33
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
++.++.+-|.+-+ -++.|||.++..-.. ..+..+ .-.....+||||||||++|
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 4445555555544 689999998865110 011111 1124556899999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|.+||||| .+-+.|.+..+ .+++|.|-+..+.. +++ |++++.|+-+++...
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 9999999999 22333333333 25799999999988 444 888889988887654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-28 Score=197.60 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=119.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.++++++.+.-++.. +|+++||.+.+||+++|+||+|||||||+|+++-+.. |++| +.+.|+++... .+
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 567777776666665 9999999999999999999999999999999999999 9999 88999976432 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeeccCCc--------------cCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDH--------------GVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~--------------~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
++.+.+.-|.+.+ -||.+|+.|+..+....++. ...++.+.+|||||+||++| .-|++|
T Consensus 76 Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~IL 155 (223)
T COG4619 76 RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKIL 155 (223)
T ss_pred HHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceE
Confidence 3445555555444 68999998876554333332 23467889999999999998 789999
Q ss_pred eEec-----------chHHHHHhcc-CC---eEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMF-DE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~-~~---~i~vtHd~~~~~~ 240 (287)
|||| .+-+.|..++ ++ .+.||||.+.+.+
T Consensus 156 LLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 156 LLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred EecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 9999 2233344444 22 4599999999776
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-28 Score=216.64 Aligned_cols=173 Identities=13% Similarity=0.107 Sum_probs=123.3
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
+|+++||++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.......
T Consensus 6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence 599999999996 344 8999999999999999999999999999999999999 9999 889998764322222
Q ss_pred CCCCCCChhHH-----HHHHHHHhcCCce-----eec-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 155 GAPWTFNPLLL-----LNCLKNLRNQGSV-----YAP-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 155 ~~~~~~~~~~~-----~tv~e~l~~~~~~-----~~~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.+.+.++...+ .++.+++.++... ... .+. ....++.+.+|||||+||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 34444443211 2345554332100 000 000 012367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH---HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.|.++.+ .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 8999999999 44555555533 24799999998876 433 7777788877753
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-28 Score=234.55 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=124.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
|.||+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 1 m~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 1 MSSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFE 73 (490)
T ss_pred CceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHH
Confidence 34799999999998755 9999999999999999999999999999999999999 9999 8888765321 1
Q ss_pred hhhCCCCCCCChhH-----------HHHHHHHHhcCCce----e--eccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL-----------LLNCLKNLRNQGSV----Y--APSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~-----------~~tv~e~l~~~~~~----~--~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+..+++.+|... .+++.+++...... . ...+. ....++.+.+|||||||||+| .+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 11112333333211 14566665432100 0 00111 123467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 154 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 154 PDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999 45555655543 24799999999876 443 7777788777653
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=208.98 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=116.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++||++.|++.. +++|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 3799999999998765 9999999999999999999999999999999999999 9999 8899865421 11
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee------------ccCCc--cCCCCCCCceeccccceEEE-----ecCCE
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA------------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~------------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
.+..+.+.+|...+ .++.+|+.+...... ..+.- ...++.+.+||+||+|||+| .+|++
T Consensus 79 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred HHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 22344455554322 478888765311100 01111 12367889999999999998 89999
Q ss_pred EeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+|||| .+.+.+.++.. .+|++|||++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999 34455555432 2479999999874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-28 Score=218.98 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=127.9
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+.+.. .|++| +.++|.++..
T Consensus 37 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred ceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 45799999999997654 899999999999999999999999999999999985200 12889 8899976532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c--------------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P--------------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~--------------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.++..... . .+. ....++.+..|||||+|||+
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred cchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 1123345555554322 378888875421100 0 000 01235678999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 44555555543 35799999999875 443 7777788877764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-28 Score=216.91 Aligned_cols=179 Identities=22% Similarity=0.262 Sum_probs=126.1
Q ss_pred ccEEEecCchhhhhhh-----hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-----~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
|++|+++||++.|++. .....+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 5689999999999730 001138999999999999999999999999999999999999 9999 889997642
Q ss_pred H------HhhhCCCCCCCChhH-----HHHHHHHHhcCCc----e-------------eeccCCccCCCCCCCceecccc
Q 023106 149 E------AHARRGAPWTFNPLL-----LLNCLKNLRNQGS----V-------------YAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~----~-------------~~~~~~~~~~~~~~~~LSgGek 200 (287)
. ...+..+.+.+|... ..++.+++.+... . ....+.....++.+..||+||+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 1 112334555555431 1355555432100 0 0001111234578899999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
||++| .+|++||||| .+++.|.++.+ ..|++|||++++.. +++ |++++.|++.
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 237 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVG 237 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChh
Confidence 99988 9999999999 34555555542 24799999999875 443 7777888877
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 238 ~~~ 240 (268)
T PRK10419 238 DKL 240 (268)
T ss_pred hcc
Confidence 754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-28 Score=241.33 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=131.3
Q ss_pred cEEEecCchhhhhhhh-------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~-------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
++|+++||++.|+... ....+|+|+||+|.+|+++||+|+||||||||+++|+|+++ |++| |.++|.++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence 5899999999996210 01238999999999999999999999999999999999999 9999 88999754
Q ss_pred HH-----H-hhhCCCCCCCChh--HH---HHHHHHHhcCCceee---------------ccCCc--cCCCCCCCceeccc
Q 023106 148 KE-----A-HARRGAPWTFNPL--LL---LNCLKNLRNQGSVYA---------------PSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 148 ~~-----~-~~~~~~~~~~~~~--~~---~tv~e~l~~~~~~~~---------------~~~~~--~~~~~~~~~LSgGe 199 (287)
.. . ..+..+.+.+|.. .+ +++.+++.+...... ..+.- ...++++.+|||||
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGq 468 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHH
Confidence 21 1 1233466666653 12 577777764311100 01111 13468899999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
||||+| .+|++||||| .+++.|.++.+ .+|+||||++++.. |++ |++++.|++
T Consensus 469 rQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~ 548 (623)
T PRK10261 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPR 548 (623)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999998 8999999999 45566655533 25799999999986 544 888888988
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+++.
T Consensus 549 ~~i~ 552 (623)
T PRK10261 549 RAVF 552 (623)
T ss_pred HHHh
Confidence 8875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-27 Score=238.23 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=111.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
..+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.+ |.++.
T Consensus 317 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~-~~~~~----- 383 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHC-GTKLE----- 383 (635)
T ss_pred CceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEE-CCCcE-----
Confidence 34899999999998765 9999999999999999999999999999999999999 9999 666 55432
Q ss_pred CCCCCCCChh----HHHHHHHHHhcCCce---e-----------eccCCccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPL----LLLNCLKNLRNQGSV---Y-----------APSFDHGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~----~~~tv~e~l~~~~~~---~-----------~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+++.+|.. ..+++.+++.+.... . ...+.....++.+..|||||||||+| .+|++
T Consensus 384 --i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l 461 (635)
T PRK11147 384 --VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461 (635)
T ss_pred --EEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22233321 115777777653210 0 00111123467889999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
||||| .+.+.+.++-..+|+||||++++..
T Consensus 462 LlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDN 502 (635)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 99999 3344444442235799999999865
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-28 Score=214.11 Aligned_cols=171 Identities=18% Similarity=0.155 Sum_probs=119.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHH----H
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~----~ 150 (287)
|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|++ + |++| +.++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 47899999998655 899999999999999999999999999999999994 6 8999 8999976422 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCce----------eec-------------cCCccCCCCCCC-ceeccccceE
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSV----------YAP-------------SFDHGVGDPVED-DILVGLQHKV 203 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~----------~~~-------------~~~~~~~~~~~~-~LSgGekqRv 203 (287)
..+.++.+.+|...+ .++.+++.+.... ... .......++.+. .|||||+|||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 122334444444322 4566665432110 000 001112345565 5999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDV 255 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~ 255 (287)
+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 88 8999999999 45566665542 24799999998864 332 666667776543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-27 Score=214.67 Aligned_cols=177 Identities=13% Similarity=0.184 Sum_probs=126.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
++|+++||++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|++... .|++| +.++|.++..
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 3799999999998655 899999999999999999999999999999999997510 12689 8899976421
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--cc-----------CC-----ccCCCCCCCceeccccceEEE--
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--PS-----------FD-----HGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~~-----------~~-----~~~~~~~~~~LSgGekqRv~I-- 205 (287)
...+..+.+.+|...+ .++.+|+.++..... .. .. ....++.+.+|||||+||++|
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred ChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 1122334455554221 478888876432110 00 00 012356788999999999988
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH-------------HHHhcCCCcH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL-------------KRHISTGKPP 253 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi-------------gr~i~~G~~~ 253 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE 244 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence 8999999999 34555555433 35799999999886 332 5667778777
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 245 ~~~ 247 (264)
T PRK14243 245 KIF 247 (264)
T ss_pred HHH
Confidence 774
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-27 Score=227.51 Aligned_cols=170 Identities=21% Similarity=0.255 Sum_probs=137.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++++++|++|+|++.. +|++|||++.+||++||+|.||||||||+|+|+|.++ |++| |.++|+.+..
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 45899999999999987 9999999999999999999999999999999999999 9999 9999986532
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec--cCCc-----------------cCCCCCCCceeccccceEEE--
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--SFDH-----------------GVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--~~~~-----------------~~~~~~~~~LSgGekqRv~I-- 205 (287)
.....|+..++|...+ ++|.||+.++.....+ ..+. ...+..+..||+||||-|.|
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr 158 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR 158 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence 2345677777877665 8999999887654321 1110 11467888999999999999
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
.+++++|||| .+++.++++.+. +|||||.++++.+ |+. |+.+..++
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 8899999999 567777777665 4699999999997 443 66665444
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-28 Score=217.17 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=127.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
++|+++||++.|++.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4799999999998765 8999999999999999999999999999999999987 6 588 8899875421
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-------------cCCc-----cCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-------------SFDH-----GVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-------------~~~~-----~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+.- ...++.+.+|||||+||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 1122334455544321 578888865321100 0 0100 012456889999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+| .+|+++|||| .+.+.|.++.+ .+|++|||++++.. |++ |+++..|++.++..
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 98 8999999999 34455554433 35799999998876 444 77778888877643
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-28 Score=218.21 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=128.4
Q ss_pred cEEEecCchhhhh--hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~--~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
++|+++|+++.|+ +.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 6 ~~l~~~nl~~~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN----ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCcc----ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCH
Confidence 3799999999995 333 8999999999999999999999999999999999999 9999 8999976532
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+.+.+|... ..++.+|+.+...... . .+. ....++.+..|||||+||++|
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 122334566666542 2689999876421110 0 000 012367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++.+.. +++ |+++..|++.++.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHh
Confidence 8999999999 45566665532 24699999998753 332 6666677776654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-28 Score=214.16 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=125.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~---- 149 (287)
+|+++|+++.|+... +|+++||+|.+|+++||+|+||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 4 IISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred eEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 699999999998655 99999999999999999999999999999999999851 012688 8899976421
Q ss_pred -HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCCc-----cCCCCCCCceeccccceEEE-
Q 023106 150 -AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFDH-----GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~~-----~~~~~~~~~LSgGekqRv~I- 205 (287)
...+.++.+.+|...+ .++.+|+.+...... . .+.- ...++.+.+|||||+||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 1123344444444322 477888765321100 0 0010 11356788999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |+++..|+++++.
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 34555555433 35799999999765 443 7777778776653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-28 Score=213.64 Aligned_cols=173 Identities=13% Similarity=0.167 Sum_probs=127.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH-
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~- 149 (287)
+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |+ +| +.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 4 KIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred eEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEcccc
Confidence 699999999998655 8999999999999999999999999999999999998 76 58 8899876531
Q ss_pred ----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-c-------c-------CC-----ccCCCCCCCceeccccceE
Q 023106 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P-------S-------FD-----HGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~-------~-------~~-----~~~~~~~~~~LSgGekqRv 203 (287)
...+..+.+.+|...+ .++.+|+.+...... . . +. ....++.+..|||||+|||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred ccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHH
Confidence 1223345555554322 478888876422110 0 0 00 0123577889999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+| .+|+++|||| .+++.|.++.. .+|++|||++++.. +++ |++++.|++.++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 88 8999999999 34455555432 24799999999876 443 6777788777663
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-27 Score=198.26 Aligned_cols=135 Identities=20% Similarity=0.273 Sum_probs=103.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~~ 153 (287)
|+++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR 75 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence 46889999997641 128999999999999999999999999999999999999 9999 88999765321 112
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----------- 215 (287)
..+.+.++...+ .++.+|+ ||+||+|||.| .+|+++||||
T Consensus 76 ~~i~~~~~~~~~~~~t~~e~l----------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~ 133 (171)
T cd03228 76 KNIAYVPQDPFLFSGTIRENI----------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEA 133 (171)
T ss_pred hhEEEEcCCchhccchHHHHh----------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 234444443322 3566665 99999999988 8999999999
Q ss_pred chHHHHHhccCC--eEEEEcChHHHH
Q 023106 216 GVWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 216 ~~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
.+++.+.++.+. .+++|||++++.
T Consensus 134 ~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 134 LILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 445555555432 469999999875
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-28 Score=215.36 Aligned_cols=174 Identities=17% Similarity=0.283 Sum_probs=123.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----HHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----PKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~~~ 149 (287)
++|+++||++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.+ +..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 3699999999998755 8999999999999999999999999999999999999 9999 8888865 321
Q ss_pred ---H-h---hhCCCCCCCChhH-----HHHHHHHHhcC-----Ccee----------eccCC--ccCCCCCCCceecccc
Q 023106 150 ---A-H---ARRGAPWTFNPLL-----LLNCLKNLRNQ-----GSVY----------APSFD--HGVGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ---~-~---~~~~~~~~~~~~~-----~~tv~e~l~~~-----~~~~----------~~~~~--~~~~~~~~~~LSgGek 200 (287)
. . ...++.+.+|... ..++.+|+.+. .... ...+. ....++.+..|||||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 1 1 1233445444421 13445554321 0000 00111 1234568899999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.+.++.+ .+|++|||++++.. +++ |++++.|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 99998 8999999999 44555555432 24799999999875 433 7777778776
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 235 ~~~ 237 (253)
T TIGR02323 235 QVL 237 (253)
T ss_pred HHh
Confidence 664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-28 Score=226.77 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=123.9
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------hhh
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-------HAR 153 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-------~~~ 153 (287)
||+|.|++.. + ++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+
T Consensus 4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7899997643 4 8999999999999999999999999999999999 9999 88999765321 123
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCceeec------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
..+.+.+|...+ +++.+|+.++...... .+. ....++.+.+|||||||||+| .+|++||
T Consensus 75 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred CCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 345555655432 6899999875321100 000 112367889999999999998 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.|.++.. .+|++|||++++.. +++ |+++..|+++++.
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999 45566666543 24799999999875 443 7777888887764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-28 Score=213.86 Aligned_cols=176 Identities=13% Similarity=0.159 Sum_probs=125.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~---- 149 (287)
.|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 4 ~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 4 KVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 689999999998655 99999999999999999999999999999999999741 012578 8999976531
Q ss_pred -HhhhCCCCCCCChhH---HHHHHHHHhcCCceee-c--------------cCCc-----cCCCCCCCceeccccceEEE
Q 023106 150 -AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P--------------SFDH-----GVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~--------------~~~~-----~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|... ..++.+|+.+...... . .+.- ...+..+.+|||||+||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 122334445555432 2577888865321100 0 0000 11245788999999999988
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 34445554433 35799999999875 443 7777788877764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-28 Score=239.62 Aligned_cols=179 Identities=15% Similarity=0.204 Sum_probs=130.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH------
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP------ 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~------ 147 (287)
+++|+++||++.|+.......+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|..+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 5589999999999642112238999999999999999999999999999999999999 9999 77776421
Q ss_pred ---------HHH-h-hhCCCCCCCChh-----HHHHHHHHHhcCCcee----e-----------ccCCc----cCCCCCC
Q 023106 148 ---------KEA-H-ARRGAPWTFNPL-----LLLNCLKNLRNQGSVY----A-----------PSFDH----GVGDPVE 192 (287)
Q Consensus 148 ---------~~~-~-~~~~~~~~~~~~-----~~~tv~e~l~~~~~~~----~-----------~~~~~----~~~~~~~ 192 (287)
... . +...+++++|.+ ..+++.+|+.++.... . ..+.- ...++++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 011 1 123466666653 1268888887542110 0 00111 1236789
Q ss_pred CceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HH
Q 023106 193 DDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 193 ~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr 245 (287)
.+|||||||||+| .+|++||||| .+++.++++.+ .+|+||||++++.. |++ |+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 9999999999998 8999999999 45666666542 24799999999876 444 78
Q ss_pred HhcCCCcHHHH
Q 023106 246 HISTGKPPDVA 256 (287)
Q Consensus 246 ~i~~G~~~~~~ 256 (287)
+++.|++.++.
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 88888887764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-28 Score=206.79 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=110.3
Q ss_pred EEEecCchhhhhhhh--hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHHHh
Q 023106 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKEAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~--~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~~~ 151 (287)
.|+++||++.|++.. ....+|+++||++++|++++|+||||||||||+++|+|++ + |++| +.++|+++....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence 488999999997510 0012899999999999999999999999999999999999 8 9999 899998764322
Q ss_pred hhCCCCCCCChhH---HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--------
Q 023106 152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------- 215 (287)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------- 215 (287)
.+..+.+.++... .+++.+|+.+.... ..||+||+||+.| .+|+++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL--------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh--------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 2333445555432 26888888653211 1799999999988 8999999999
Q ss_pred ---chHHHHHhccC---CeEEEEcChH-HHH
Q 023106 216 ---GVWKDVSSMFD---EKWFIEVDLD-TAM 239 (287)
Q Consensus 216 ---~~~~~l~~~~~---~~i~vtHd~~-~~~ 239 (287)
.+++.|.++.+ ..|++|||++ .+.
T Consensus 146 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCchHHHH
Confidence 44555555433 2469999996 444
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-27 Score=208.75 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=124.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ...+|+|+||++++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46899999996421 1238999999999999999999999999999999999999 9999 8999976532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-c---------cCC----------ccCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-P---------SFD----------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~---------~~~----------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.++...+ .++.+|+.+...... . ... ....++.+.+|||||+|||.| .
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 77 SQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred hhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 335555554332 588898876422110 0 000 001245678999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+++.|.++... +|++|||++++.. +++ |++++.|+.+++.
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999 455666555432 4699999998854 333 6766677766553
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-27 Score=213.63 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=126.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---Ccc-eeeCCCCHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKA-SSFDSQDPKE-- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p---~~G-i~~~g~~~~~-- 149 (287)
++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|++.. .| ++| +.++|.++..
T Consensus 5 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 5 IILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEEccccc
Confidence 4799999999998765 99999999999999999999999999999999998750 02 479 8899976532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec---------------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP---------------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~---------------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.+....... .+. ....++.+..||+||+||++
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred cchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 1223345555554322 4888888764321100 000 01135678899999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++.+ .+|++|||++++.. +++ |+++..|+++++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 8 8999999999 34455554433 35799999999875 443 7777788877663
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-27 Score=205.43 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=112.7
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH---H----Hh
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK---E----AH 151 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~---~----~~ 151 (287)
++||++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++. . ..
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 478999998655 9999999999999999999999999999999999999 9999 899998632 1 12
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.++++.+.++...+ .++.+|+.+...... ..+. ....++.+.+||+||+||++| .+|
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 74 RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred HHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 23445555555432 588888875321100 0000 112367889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
+++|||| .+++.|.++.+ ..|++||+++..
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999 45555555432 246999999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-27 Score=201.66 Aligned_cols=137 Identities=27% Similarity=0.387 Sum_probs=105.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----Hh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----AH 151 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~~ 151 (287)
|+++|+++.|++.. +++++||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 46889999997654 8999999999999999999999999999999999999 9999 8899875422 12
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--------
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------- 215 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------- 215 (287)
.+..+.+.++...+ .++.+|+.+. ||+||+||++| .+|++++|||
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~ 134 (178)
T cd03229 74 LRRRIGMVFQDFALFPHLTVLENIALG-------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPI 134 (178)
T ss_pred HhhcEEEEecCCccCCCCCHHHheeec-------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 22334444443221 4666665432 99999999988 8999999999
Q ss_pred ---chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 ---GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..+++|||++++..
T Consensus 135 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 135 TRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44555555543 24699999998763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-28 Score=216.24 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=128.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
++|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 6 ~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred ceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence 4799999999997521 128999999999999999999999999999999999999 9999 9999976522 12
Q ss_pred hhCCCCCCCChhH----HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 152 ARRGAPWTFNPLL----LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+..+.+.+|... ..++.+|+.+...... ..+. ....++.+..||+||+||++| .+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2334555665532 1456676655321100 0000 112356889999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
|+++|||| .+++.|.++.+ ..|++||+++++.. |++ |++++.|+++++..
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999 45556665532 24699999998865 443 77778888877643
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-27 Score=214.48 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=127.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|++... .|++| +.++|.++..
T Consensus 18 ~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 45899999999998755 899999999999999999999999999999999998510 01578 8899976521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-------------ccCC-----ccCCCCCCCceeccccceEEE-
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------PSFD-----HGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~~~~-----~~~~~~~~~~LSgGekqRv~I- 205 (287)
...+.++.+.+|...+ .++.+|+.++..... ..+. ....++.+.+|||||+|||+|
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 1223345555554322 377888865421100 0000 012356789999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HH-------------HHHHhcCCCc
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV-------------LKRHISTGKP 252 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rv-------------igr~i~~G~~ 252 (287)
.+|++||||| .+++.|.++.+. +|++|||++++.. |+ -|++++.|++
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 8999999999 455555555432 5799999999976 22 1566777888
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
.++.
T Consensus 254 ~~~~ 257 (274)
T PRK14265 254 EQMF 257 (274)
T ss_pred HHHH
Confidence 7774
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-27 Score=200.55 Aligned_cols=135 Identities=24% Similarity=0.379 Sum_probs=106.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~ 154 (287)
|+++|+++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 46889999997654 8999999999999999999999999999999999999 9999 8899875432 12223
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----------- 215 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----------- 215 (287)
.+.+.+|...+ .++.+|+. ||+||+||+.| .+|+++||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~~---------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 132 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENLK---------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132 (173)
T ss_pred cEEEEecCCccccCCcHHHHhh---------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34555554322 47777763 99999999988 8999999999
Q ss_pred chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 216 GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+. .+++|||.+++..
T Consensus 133 ~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 133 EFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 455666665432 4699999998764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-27 Score=204.57 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=115.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~ 153 (287)
||+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 488999999998755 9999999999999999999999999999999999999 9999 9999986532 1222
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceee---------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYA---------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
..+.+.++... ..++.+|+.+...... ..+. ....++.+..||+||+||++| .+|+++||||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33444443322 2678888776421100 0011 112356778999999999988 8999999999
Q ss_pred -----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 -----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.|.++.+ ..|++||+.+.+..
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 44555555422 24699999887643
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-28 Score=213.90 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=124.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---Ccc-eeeCCCCHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKA-SSFDSQDPKE-- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p---~~G-i~~~g~~~~~-- 149 (287)
+||+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++. .| ++| |.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence 4799999999998654 89999999999999999999999999999999998630 03 488 8899976521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.+...... . ... ....++.+.+||+||+||++
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred ccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 1222344455544321 477777764311000 0 000 01235678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8 8999999999 34455555433 35799999999875 443 6777778777664
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-27 Score=212.30 Aligned_cols=166 Identities=20% Similarity=0.265 Sum_probs=118.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~~-------- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGKL-------- 67 (251)
T ss_pred cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCcc--------
Confidence 3799999999998755 8999999999999999999999999999999999999 9999 8777631
Q ss_pred CCCCCCChhH----H-HHHHHHHhcCCceee-------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 155 GAPWTFNPLL----L-LNCLKNLRNQGSVYA-------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 155 ~~~~~~~~~~----~-~tv~e~l~~~~~~~~-------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
.+.+.+|... + .++.+++.+...... ..+. ....++.+..|||||+|||+| .+|+++||||
T Consensus 68 ~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 147 (251)
T PRK09544 68 RIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEP 147 (251)
T ss_pred CEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1222222211 0 355555543211100 0011 112356789999999999988 8999999999
Q ss_pred ----------chHHHHHhccC----CeEEEEcChHHHHH---HHH---HHHhcCCCcHHHH
Q 023106 216 ----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 216 ----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~ 256 (287)
.+++.|.++.. .+|++|||++++.. +++ ++++..|++.++.
T Consensus 148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 44555555432 24699999999876 433 5666778877664
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-26 Score=202.88 Aligned_cols=160 Identities=17% Similarity=0.162 Sum_probs=118.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
++|+++|+++.|++.. ...+|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... .
T Consensus 10 ~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 10 GIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred ceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHHH
Confidence 4799999999997521 1128999999999999999999999999999999999999 9999 89999875431 2
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCC---ccCCCCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFD---HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~---~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.+..+.+.++...+ .++.+|+.+...... ..+. ....++.+.+|||||+|||+|
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 86 LHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred HHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 22335555554332 588888875422100 0010 112356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++.+.++.+. .|++|||++++.
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 8999999999 345556555432 469999999884
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-27 Score=198.83 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=103.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+++++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 46899999997521 128999999999999999999999999999999999999 9999 8899876432 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----------- 215 (287)
..+.+.+|...+ .++.+|+ |||||+||++| .+|+++||||
T Consensus 76 ~~i~~~~q~~~~~~~tv~~~l----------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~ 133 (173)
T cd03246 76 DHVGYLPQDDELFSGSIAENI----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133 (173)
T ss_pred hheEEECCCCccccCcHHHHC----------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHH
Confidence 334445544321 3566664 99999999988 8999999999
Q ss_pred chHHHHHhccC---CeEEEEcChHHH
Q 023106 216 GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 216 ~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+++.+.++.+ ..+++|||++++
T Consensus 134 ~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 134 ALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 45555555543 247999999876
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-27 Score=196.76 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=102.9
Q ss_pred EEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
|+++|+++.|++ +. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.. .
T Consensus 1 i~~~~~~~~~~~~~~----~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~--------~ 65 (166)
T cd03223 1 IELENLSLATPDGRV----LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGE--------D 65 (166)
T ss_pred CEEEEEEEEcCCCCe----eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCc--------e
Confidence 468899999953 33 8999999999999999999999999999999999999 9999 8887641 1
Q ss_pred CCCCCChhH--HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 156 APWTFNPLL--LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 156 ~~~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
+.+.+|... ..++.+|+.+. .+.+|||||+||++| .+|+++|||| .+
T Consensus 66 i~~~~q~~~~~~~tv~~nl~~~---------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l 130 (166)
T cd03223 66 LLFLPQRPYLPLGTLREQLIYP---------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130 (166)
T ss_pred EEEECCCCccccccHHHHhhcc---------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH
Confidence 223333221 25888998753 467899999999988 8999999999 34
Q ss_pred HHHHHhccCCeEEEEcChHHH
Q 023106 218 WKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 218 ~~~l~~~~~~~i~vtHd~~~~ 238 (287)
.+.+.++....|++|||.+..
T Consensus 131 ~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 131 YQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHhCCEEEEEeCChhHH
Confidence 455555433357999998754
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-27 Score=217.23 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=125.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 45799999999998655 999999999999999999999999999999999998510 14789 8899976521
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-------------eccCCc-----cCCCCCCCceeccccceEEE-
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------APSFDH-----GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~~~~~~-----~~~~~~~~~LSgGekqRv~I- 205 (287)
...+..+.+.+|...+ .++.+|+.+..... ...+.- ...++.+.+|||||||||+|
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 1122334444444221 36777776431110 000110 12356789999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH-----HHHhcCCCcHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL-----KRHISTGKPPDV 255 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi-----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 8999999999 45555555543 25799999999876 421 677777776665
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-27 Score=216.57 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=130.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ...+|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence 699999999997421 1238999999999999999999999999999999999999 9999 8999976431 122
Q ss_pred hCCCCCCCChhH--H--HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 153 RRGAPWTFNPLL--L--LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~--~--~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+..+.+.+|... + .++.+|+.++..... . .+. ....++.+..|||||+||++| .+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 344666666532 2 588898875421100 0 000 012356889999999999998 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| .+++.+.++.+ .+|++|||++++.. +++ |++++.|+++++..
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999 45555555543 24799999999864 443 78788888877653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-28 Score=208.62 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=113.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. .|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46899999997632 29999999999999999999999999999999999 9999 88999764321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ .++.+|+.+....... .+. ....++.+.+||+||+||++| .+|+++|
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll 151 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4455544332 5888998764321100 000 012357889999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.. .+|++|||++++..
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 999 45566665532 24699999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-27 Score=213.32 Aligned_cols=175 Identities=16% Similarity=0.235 Sum_probs=126.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~ 148 (287)
+++|+++||++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++| +.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 45799999999998655 8999999999999999999999999999999999987 5 479 889997653
Q ss_pred H-----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-------------cCC-----ccCCCCCCCceeccccc
Q 023106 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-------------SFD-----HGVGDPVEDDILVGLQH 201 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-------------~~~-----~~~~~~~~~~LSgGekq 201 (287)
. ...+.++.+.+|...+ .++.+|+.+...... + .+. ....++.+.+||+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 1 1122345555554322 578888765311000 0 000 01235678899999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HH--H-------HHHhcCCC
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L-------KRHISTGK 251 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--i-------gr~i~~G~ 251 (287)
||+| .+|+++|||| .+++.|.++.. .+|++|||++++.. |+ + |++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 9988 8999999999 45555555433 25799999999976 32 2 56667788
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
+.++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14260 238 TTQIF 242 (259)
T ss_pred HHHHh
Confidence 77764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-27 Score=208.05 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=123.4
Q ss_pred EEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 78 VEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 78 i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
|+++|+++.|+ +.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 46889999996 344 8999999999999999999999999999999999999 9999 8899976542 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------cC-------C---ccCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------SF-------D---HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------~~-------~---~~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.++...+ .++.+|+.+....... .. . ....++.+..||+||+|||+|
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 74 RRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred HhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 2334444444322 5888888764321000 00 0 001234578999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.+ .+|++||+.+.+.. |++ |+++..|+.+++.
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 8999999999 34555555443 24699999999865 333 6666677766554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-27 Score=214.31 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=127.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++. ..|++| +.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 34799999999998655 89999999999999999999999999999999999860 012789 8899976531
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee---c------------cCCc-----cCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---P------------SFDH-----GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~------------~~~~-----~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.+...... . .+.. ...++.+.+|||||+|||+
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 1223344555544321 377888865321110 0 0000 1234678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 8 8999999999 44555555433 24799999999865 444 7777888877664
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-28 Score=213.37 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=122.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.... ...+
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~-~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKD-LHKI 72 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccc-cccE
Confidence 46899999998655 8999999999999999999999999999999999999 9999 889987643211 1233
Q ss_pred CCCCChhH---HHHHHHHHhcCCceee----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 157 PWTFNPLL---LLNCLKNLRNQGSVYA----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 157 ~~~~~~~~---~~tv~e~l~~~~~~~~----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
.+.++... ..++.+|+.+...... ..+. ....++.+.+||+||+||++| .+|+++||||
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 34444322 2577788764321110 0010 112356788999999999988 8999999999
Q ss_pred ---------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 216 ---------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
.+++.|.++.+ ..|++|||++++.. |++ |+++..|++.+
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 45555655543 24799999999865 443 67777777653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-27 Score=212.95 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=121.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----Ccc-eeeCCCCHHHHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKA-SSFDSQDPKEAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p----~~G-i~~~g~~~~~~~ 151 (287)
+|+++||++.| +.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ | ++| +.++|.++....
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 69999999999 444 8999999999999999999999999999999999998 8 899 889998653211
Q ss_pred -hhCCCCCCCChhH-----HHHHHHHHhcC-----Ccee-------eccCCcc----CCCCCCCceeccccceEEE----
Q 023106 152 -ARRGAPWTFNPLL-----LLNCLKNLRNQ-----GSVY-------APSFDHG----VGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 -~~~~~~~~~~~~~-----~~tv~e~l~~~-----~~~~-------~~~~~~~----~~~~~~~~LSgGekqRv~I---- 205 (287)
....+.+.+|... ..++.+++... .... ...+.-. ..++.+.+|||||+|||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral 155 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL 155 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHH
Confidence 1123444444321 13444444321 0000 0001111 2356789999999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .++++||+++.+.. |++ |+++..|+++++.
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 8999999999 45566665533 24699999999865 443 7777778877663
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-27 Score=214.50 Aligned_cols=178 Identities=12% Similarity=0.143 Sum_probs=126.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~--~~~p~~G-i~~~g~~~~~-- 149 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||+++|+|+++ ...|++| +.++|.++..
T Consensus 22 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred ceEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 34799999999998655 8999999999999999999999999999999999985 1124789 8899875421
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee-------c--------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------P--------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~--------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.++..... . .+. ....++.+..|||||+||++
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 1122334455554322 478888865311100 0 000 01225678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++.. .+|++|||++++.. |++ |+++..|++.++.
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8 8999999999 34455555433 24799999999875 443 7777788877663
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-27 Score=197.56 Aligned_cols=137 Identities=25% Similarity=0.353 Sum_probs=108.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence 379999999988 6899999999999999999999999999999999999 9999 8999976532 1
Q ss_pred hhhCCCCCCCChh------HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----
Q 023106 151 HARRGAPWTFNPL------LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---- 215 (287)
Q Consensus 151 ~~~~~~~~~~~~~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---- 215 (287)
..+..+.+.+|.. ...++.+|+.+... ||+||+||++| .+|+++||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----------------LS~G~~qrl~la~al~~~p~llllDEP~~~ 134 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----------------LSGGNQQKVVLARWLARDPRVLILDEPTRG 134 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------------cCHHHHHHHHHHHHHccCCCEEEECCCCcC
Confidence 2233455555542 12588888876421 99999999988 8999999999
Q ss_pred -------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 -------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.+.++.+ ..|++|||++++..
T Consensus 135 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 135 VDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45555555532 24699999988764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-27 Score=203.70 Aligned_cols=156 Identities=18% Similarity=0.137 Sum_probs=114.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~ 154 (287)
|+++||++.|++.. +|+++||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 46899999998765 8999999999999999999999999999999999999 9999 8899876532 12223
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee--------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA--------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~--------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
++.+.+|... ..++.+|+.+...... ..+. ....++.+.+|||||+||++| .+|+++||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred heEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3444444332 2678888876432110 0011 012366789999999999988 8999999999
Q ss_pred ---------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+.+.|.++.+ ..|++|||......
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 44555554432 24699998877654
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-27 Score=204.20 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=114.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHH----H
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~----~ 150 (287)
|+++|+++.|++.. +|+++||++.+|++++|+|+||||||||+++|+|+ +. |++| +.++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 46899999998654 99999999999999999999999999999999999 47 8999 8999976532 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG------- 215 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE------- 215 (287)
..+..+.+.++...+ .++.+++ .+....|||||+||++| .+|+++||||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~l----------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 137 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGVKNADFL----------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 (200)
T ss_pred HhhCcEEEeecChhhccCccHHHHH----------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 122335555555432 3444444 12346899999999988 8999999999
Q ss_pred ----chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcHHHH
Q 023106 216 ----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 216 ----~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~~ 256 (287)
.+++.|.++.+ ..|++||+++.+.. |++ |++++.| +.++.
T Consensus 138 ~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 138 DALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 45566665543 24799999998762 222 6666777 44443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-27 Score=205.94 Aligned_cols=158 Identities=19% Similarity=0.216 Sum_probs=114.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 78999999996421 128999999999999999999999999999999999999 9999 8999976532 1123
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeec-------cC--Cc----------cCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------SF--DH----------GVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------~~--~~----------~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+.+.++...+ .++.+|+.+....... .+ .. ....+.+..||+||+||++| .+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 334455544332 4788888643211000 00 00 01135788999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
|+++|||| .+++.|.++... +|++||+++++..
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 99999999 455556554332 4699999998865
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-27 Score=204.97 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=114.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~ 153 (287)
.+.++||+|.|+.......+|+++||+|.+|++++|+||||||||||+++|+|+++...|++| +.++|.++... ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 578999999997543334599999999999999999999999999999999999861114688 88999765321 222
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----------
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---------- 215 (287)
..+.+.++... .+++.+|+.+..... .++.+..||+||+||++| .+|+++||||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~ 154 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK--------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHH
Confidence 33445554432 268999987653321 456788999999999988 8999999999
Q ss_pred -chHHHHHhccC---C-eEEEE-cChHHHHH
Q 023106 216 -GVWKDVSSMFD---E-KWFIE-VDLDTAMQ 240 (287)
Q Consensus 216 -~~~~~l~~~~~---~-~i~vt-Hd~~~~~~ 240 (287)
.+++.+.++.+ . .++++ |+.+.+..
T Consensus 155 ~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 155 LEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 45666666543 2 24554 55566654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-27 Score=204.39 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=117.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++|+++.|++.. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 6 ~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 6 EIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred eEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHHH
Confidence 589999999997521 128999999999999999999999999999999999999 9999 89999865321 12
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeecc-CCccCCCCCCCceeccccceEEE-----ecCCEEeEec---------
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAPS-FDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--------- 215 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--------- 215 (287)
+.++.+.+|...+ .++.+|+.+........ ......++.+..|||||+||++| .+|+++||||
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 3345555554322 48888886532111000 00001356789999999999988 8999999999
Q ss_pred --chHHHHHhccCC--eEEEEcChHHHHH
Q 023106 216 --GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 --~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
.+++.|.++... .|++|||.+++..
T Consensus 161 ~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 161 DALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 455666665432 4799999998854
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-27 Score=229.56 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=126.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~~~g~~~~~---- 149 (287)
+|+++||++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ | ++| +.++|+++..
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 488999999998755 8999999999999999999999999999999999987 7 689 8899876421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceee----c--------------cCCcc-C-CCCCCCceeccccceEEE-
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA----P--------------SFDHG-V-GDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~----~--------------~~~~~-~-~~~~~~~LSgGekqRv~I- 205 (287)
...+.++++.+|...+ +++.+|+.++..... . .+.-. . .++.+.+|||||||||+|
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred HHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHH
Confidence 1123445566665432 688888876532110 0 00001 1 245688999999999988
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.|.++.+. +|++|||++++.. |++ |+++..|++.++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 8999999999 455555554332 4799999999876 443 677777766543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=226.00 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=125.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 2 SPYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred CceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence 35799999999998755 8999999999999999999999999999999999999 9999 8898875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCcee--e--c-------------cCC-ccCCCCCCCceeccccceEEE---
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVY--A--P-------------SFD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~--~--~-------------~~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
...+.++.+.+|...+ +++.+|+.++.... . . .+. ....++.+.+|||||||||+|
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 1223445666665432 58889988743110 0 0 000 012357889999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 8999999999 45555555433 24799999999875 443 5555443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-27 Score=230.68 Aligned_cols=166 Identities=14% Similarity=0.029 Sum_probs=119.0
Q ss_pred ccEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh
Q 023106 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~ 152 (287)
++||+++||++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.+++..
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~~------ 70 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPGI------ 70 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC------
Confidence 34899999999998 555 9999999999999999999999999999999999999 9999 7766421
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCce---------------eec---------------------------------
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSV---------------YAP--------------------------------- 181 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~---------------~~~--------------------------------- 181 (287)
.+++.+|... .+++.+|+.++... ...
T Consensus 71 --~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 71 --KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred --EEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 1223333221 24666666543100 000
Q ss_pred --cCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---
Q 023106 182 --SFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ--- 240 (287)
Q Consensus 182 --~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~--- 240 (287)
.+.-...++.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++++..
T Consensus 149 l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred HHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC
Confidence 000012367889999999999988 8999999999 3455555554445799999999976
Q ss_pred HHH----HHHh-cCCCcHHH
Q 023106 241 RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 241 rvi----gr~i-~~G~~~~~ 255 (287)
+++ |+++ ..|..++.
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eEEEEeCCEEEEecCCHHHH
Confidence 444 6655 56766553
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=236.71 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=136.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|+.++ .+.+|+++||.|++|+.+||+|||||||||++++|.+++. |++| |.+||.++... ..
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 599999999998875 5569999999999999999999999999999999999999 9999 99999987542 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------c--------cCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------P--------SFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~--------~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..++.++|.+-+ .|+.|||.++..-.. . .++..... ..-+|||||||||+|
T Consensus 426 r~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge-~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE-RGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred HhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC-CCCCCChHHHHHHHHHHHH
Confidence 3345666666544 799999999863110 0 11111122 334599999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+.+.|.+... .+|+|+|.+..+.. +++ |++++.|+.+|++..
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 8999999999 22333333332 36899999999988 444 899999999998764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-27 Score=234.72 Aligned_cols=168 Identities=16% Similarity=0.136 Sum_probs=119.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| |.+++. ..
T Consensus 310 ~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~-~~----- 376 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG-IK----- 376 (638)
T ss_pred CceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC-EE-----
Confidence 45899999999998765 9999999999999999999999999999999999999 9999 766532 11
Q ss_pred CCCCCCCChh-----HHHHHHHHHhc-CCc---------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPWTFNPL-----LLLNCLKNLRN-QGS---------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~~~~~~-----~~~tv~e~l~~-~~~---------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
+++.+|.. ...++++++.. ... +....+.....++.+..|||||||||+| .+|++|||
T Consensus 377 --igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlL 454 (638)
T PRK10636 377 --LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454 (638)
T ss_pred --EEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11222210 01244444321 100 0111222223467899999999999988 89999999
Q ss_pred ec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 214 DG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
|| .+.+.|.++-..+|+||||++++.. |++ |+++ +.|+..+...
T Consensus 455 DEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 455 DEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99 4455555553335799999999876 443 6765 5788777643
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=198.90 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=108.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHHHhhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
+|+++|+++.|++......+|+++||++++|++++|+||||||||||+++|+|++ + |++| +.++|.++.. ..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~-~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDK-NFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHH-Hhh
Confidence 5899999999975110123899999999999999999999999999999999975 4 7889 8899987642 222
Q ss_pred CCCCCCCChhH---HHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----------
Q 023106 154 RGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---------- 215 (287)
Q Consensus 154 ~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---------- 215 (287)
..+.+.+|... ..++.+|+.+.... .+|||||+||+.| .+|+++|+||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~ 144 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA 144 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence 33445555432 26888998763211 1899999999988 8999999999
Q ss_pred -chHHHHHhccC---CeEEEEcChHH
Q 023106 216 -GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.+++.+.++.+ ..|++||+++.
T Consensus 145 ~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 145 YNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred HHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 45555555432 24699999984
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-27 Score=210.36 Aligned_cols=172 Identities=19% Similarity=0.299 Sum_probs=124.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|++++|++.. +++++||+|.+|+++||+|+||||||||+++|+|+++ |+.| +.++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46899999998765 9999999999999999999999999999999999999 9999 88999755321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.++...+ +++.+|+.+....... .+. ....++.+..||+||+||++| .+|+++|
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4444444322 4777887643211100 000 112356788999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.+.++.. .++++||+++++.. |++ |++++.|+..++.
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999 45555555532 34699999999865 443 6777777766554
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-27 Score=229.62 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=126.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHHH----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPKE---- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~~---- 149 (287)
++|+++||++.|+... ...+|+|+||+|++|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 258 ~~l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 258 VILEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred ceEEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCHH
Confidence 4799999999994210 1128999999999999999999999999999999999987 6 899 8888875421
Q ss_pred HhhhCCCCCCCChh------HHHHHHHHHhcCCc--eee-----------------ccCCc--cCCCCCCCceeccccce
Q 023106 150 AHARRGAPWTFNPL------LLLNCLKNLRNQGS--VYA-----------------PSFDH--GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ~~~~~~~~~~~~~~------~~~tv~e~l~~~~~--~~~-----------------~~~~~--~~~~~~~~~LSgGekqR 202 (287)
...+.++.+.+|.. ..+++.+|+.++.. ... ..+.- ...++.+.+||||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 12234456666553 12688888865321 100 01111 13467889999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 988 8999999999 44555555433 24799999999876 444 777777776665
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-27 Score=202.97 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=112.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++|+++.|++.. ..+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 78999999997521 128999999999999999999999999999999999999 9999 8899976532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeec--------cCCc-cCCC-----------CCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAP--------SFDH-GVGD-----------PVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~--------~~~~-~~~~-----------~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+.+|...+ .++.+|+.+....... .+.- ...+ ..+.+|||||+||+.| .
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 334444443321 5888888764221100 0000 0011 2357999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+|+++|||| .+++.|.++.. .+|++|||+++.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 999999999 45566666544 246999999975
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-27 Score=235.06 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=133.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 477 ~I~~~~vsf~y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLE--PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCC--CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 599999999997521 138999999999999999999999999999999999999 9999 99999987542 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCccC---CCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|+..+ .|+.||+.++.. .... ....+. -......||||||||++|
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 4446666766554 689999987532 1000 000011 112346799999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.+.-...|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 8999999999 4555666533345799999999877 655 89899999988864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-27 Score=208.26 Aligned_cols=178 Identities=14% Similarity=0.184 Sum_probs=127.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~--~~p~~G-i~~~g~~~~~-- 149 (287)
|.+|+++||++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|++.. ..|++| +.++|.++..
T Consensus 1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 44799999999998655 89999999999999999999999999999999998641 113789 8999976532
Q ss_pred ---HhhhCCCCCCCChhHH--HHHHHHHhcCCceee----c-----------cCC-----ccCCCCCCCceeccccceEE
Q 023106 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA----P-----------SFD-----HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----~-----------~~~-----~~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|...+ .++.+|+.+...... . .+. ....++.+..||+||+||++
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred ccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH
Confidence 1123345555544321 478888865421110 0 000 01125678899999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|+++|||| .+.+.|.++... +|++||+++++.. +++ |++++.|++.++.
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 8 8999999999 445555554332 4799999999987 332 6777788877763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-27 Score=205.79 Aligned_cols=154 Identities=20% Similarity=0.209 Sum_probs=113.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
++++||++.|+. .+.++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999963 5679999999999999999999999999999999999 9999 89999765321 12233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceee--c------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYA--P------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~--~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.+|...+ +++.+|+.+...... . .+. ....++.+.+||+||+||++| .+|+++|
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 151 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL 151 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4555554332 588888865321100 0 000 012367889999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
||| .+++.|.++.+ ..|++||+.+++..
T Consensus 152 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~ 194 (213)
T TIGR01277 152 LDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194 (213)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 999 45556665542 24799999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-26 Score=194.16 Aligned_cols=123 Identities=24% Similarity=0.346 Sum_probs=96.6
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH----hh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----HA 152 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----~~ 152 (287)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR 73 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH
Confidence 46899999998755 9999999999999999999999999999999999999 9999 88888654210 00
Q ss_pred hCCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------c
Q 023106 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------G 216 (287)
Q Consensus 153 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~ 216 (287)
+..+.+.+ +||+||+||++| .+|+++|||| .
T Consensus 74 ~~~i~~~~---------------------------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~ 120 (163)
T cd03216 74 RAGIAMVY---------------------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVER 120 (163)
T ss_pred hcCeEEEE---------------------------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 01111111 199999999988 8999999999 4
Q ss_pred hHHHHHhccC---CeEEEEcChHHHHH
Q 023106 217 VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++.++++.+ ..|++|||++.+..
T Consensus 121 l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 121 LFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5555655533 24699999998764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-27 Score=229.59 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=126.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
+||+++||++.|++......+|+++||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 479999999999631001238999999999999999999999999999999999998 6 689 8899986522
Q ss_pred -----H--hhhCCCCCCCChhH-----HHHHHHHHhcCCc----eee-----------ccCCcc----CCCCCCCceecc
Q 023106 150 -----A--HARRGAPWTFNPLL-----LLNCLKNLRNQGS----VYA-----------PSFDHG----VGDPVEDDILVG 198 (287)
Q Consensus 150 -----~--~~~~~~~~~~~~~~-----~~tv~e~l~~~~~----~~~-----------~~~~~~----~~~~~~~~LSgG 198 (287)
. .+...+++.+|... ..++.+++.+... ... ..+.-. ..++.+.+||||
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1 11234566666532 2566666543210 000 001110 125689999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|||||+| .+|++||||| .+++.|.++.+ .+|+||||++.+.. |++ |++++.|.
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 240 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999998 8999999999 45566666532 24799999999875 444 77777777
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
+.++.
T Consensus 241 ~~~~~ 245 (529)
T PRK15134 241 AATLF 245 (529)
T ss_pred HHHHh
Confidence 77653
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-27 Score=208.67 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=125.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC------CCHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS------QDPK 148 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g------~~~~ 148 (287)
++|+++|++++|++.. +|+|+||++.+|++++|+|+||||||||+++|+|++. |++| +.++| .++.
T Consensus 9 ~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 9 DVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCcccc
Confidence 4799999999998866 9999999999999999999999999999999999999 8886 55554 4432
Q ss_pred ---HHhhhCCCCCCCChhHH---HHHHHHHhcCCceee--c-------------cCCc-----cCCCCCCCceeccccce
Q 023106 149 ---EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--P-------------SFDH-----GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--~-------------~~~~-----~~~~~~~~~LSgGekqR 202 (287)
....+..+.+.++...+ .++.+|+.++..... . .+.- ...++.+..||+||+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 11223345555554322 578888875321100 0 0110 12356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++| .+|+++|||| .+.+.+.++.+ .+|++||+++.+.. +++ |+++..|+++++.
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 988 8999999999 34445544433 35799999998865 443 7777788877764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-27 Score=229.15 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=114.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|...
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~~~-------- 65 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPNER-------- 65 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCCE--------
Confidence 489999999998765 9999999999999999999999999999999999999 9999 77876320
Q ss_pred CCCCCChh---HHHHHHHHHhcCCc------------------------------------------------eeeccCC
Q 023106 156 APWTFNPL---LLLNCLKNLRNQGS------------------------------------------------VYAPSFD 184 (287)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~------------------------------------------------~~~~~~~ 184 (287)
+++.+|.. ..+++.+++.++.. +......
T Consensus 66 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 145 (530)
T PRK15064 66 LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145 (530)
T ss_pred EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Confidence 11111111 11234444332110 0000000
Q ss_pred ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH--
Q 023106 185 HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL-- 243 (287)
Q Consensus 185 ~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi-- 243 (287)
....++.+.+|||||||||+| .+|++||||| .+++.|.+.-..+|+||||++++.. |++
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 011235789999999999988 8999999999 3444444322235799999999876 444
Q ss_pred --HHHh-cCCCcHHHH
Q 023106 244 --KRHI-STGKPPDVA 256 (287)
Q Consensus 244 --gr~i-~~G~~~~~~ 256 (287)
|+++ +.|+++++.
T Consensus 226 ~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 226 DYGELRVYPGNYDEYM 241 (530)
T ss_pred eCCEEEEecCCHHHHH
Confidence 6763 578776553
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-26 Score=201.43 Aligned_cols=161 Identities=20% Similarity=0.165 Sum_probs=112.1
Q ss_pred EEEecCchhhhhhhh---hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC--CC--CHH
Q 023106 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD--SQ--DPK 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~---~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~--g~--~~~ 148 (287)
||+++||++.|+... ....+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++ |. ++.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 488999999996310 01238999999999999999999999999999999999999 9999 8887 42 332
Q ss_pred H----H---hhhCCCCCCCChhHH---HHHHHHHhcCCceee--------------ccC--CccCCCCCCCceeccccce
Q 023106 149 E----A---HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA--------------PSF--DHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 149 ~----~---~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~--------------~~~--~~~~~~~~~~~LSgGekqR 202 (287)
. . ....++.+.+|...+ +++.+++.+...... ..+ .....++.+.+||+||+||
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 157 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQR 157 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHH
Confidence 1 0 112345555554332 567777654211000 001 1112356789999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++| .+|+++|||| .+.+.|.++.+ ..+++|||++++..
T Consensus 158 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 158 VNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 988 8999999999 44555555433 24799999888753
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-27 Score=234.40 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=133.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+|+|+|++. |++| +.++|.++.. ...
T Consensus 451 ~I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDG--PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCC--ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 599999999996321 238999999999999999999999999999999999999 9999 9999987643 223
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCccC---CCCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+++++|+..+ -|+.||+.++...... ....+. -......||||||||++| .
T Consensus 526 r~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred HhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 4446666666544 6889999886431000 000000 012345799999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.+.++-...|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 606 ~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 606 KPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999 4556666654456799999998876 655 89999999888754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-27 Score=210.31 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=124.3
Q ss_pred EEecCchhhhh--hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 78 VEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 78 i~~~~l~~~y~--~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
|+++||++.|. +.. +|+|+||+|++|+++||+|+||||||||+++|+|+++ ++| +.++|.++... .
T Consensus 3 i~~~nls~~~~~~~~~----~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~----~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEGGNA----VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCCCCc----ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEhhhCCHHH
Confidence 78999999994 333 8999999999999999999999999999999999985 468 99999876431 2
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee-------ccCC-ccCCCCCCC-----------ceeccccceEEE-----
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------PSFD-HGVGDPVED-----------DILVGLQHKVVI----- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~~~~-~~~~~~~~~-----------~LSgGekqRv~I----- 205 (287)
.+..+.+.+|...+ .++.+|+........ .... ....++.+. .||+||+||++|
T Consensus 75 lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 75 WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 23344555554432 588888853221100 0000 001123344 499999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.|.+.... +|+|||+++.+.. |++ |++++.|+++++..
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 8999999999 445555554433 4799999998876 544 88889999999865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-27 Score=213.33 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=127.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++.. .|++| +.++|.++..
T Consensus 44 ~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 44 AKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred ceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3799999999998755 999999999999999999999999999999999998510 14789 8899876421
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-------------e--cc------------CC-----ccCCCCCCC
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------A--PS------------FD-----HGVGDPVED 193 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~--~~------------~~-----~~~~~~~~~ 193 (287)
...+..+.+.+|...+ .++.+|+.++.... . .. +. ....++.+.
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 1122345555554321 47888887542110 0 00 00 011256788
Q ss_pred ceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HH--H---HHHh
Q 023106 194 DILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RV--L---KRHI 247 (287)
Q Consensus 194 ~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rv--i---gr~i 247 (287)
+|||||+|||+| .+|++||||| .+++.|.++.+. +|++|||++.+.. |+ + |+++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 999999999988 8999999999 455566555443 4699999999876 53 1 6777
Q ss_pred cCCCcHHHH
Q 023106 248 STGKPPDVA 256 (287)
Q Consensus 248 ~~G~~~~~~ 256 (287)
+.|+++++.
T Consensus 280 ~~g~~~~~~ 288 (305)
T PRK14264 280 EYDDTDKIF 288 (305)
T ss_pred EeCCHHHHH
Confidence 788877663
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-27 Score=209.45 Aligned_cols=172 Identities=22% Similarity=0.368 Sum_probs=125.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++.. +|+++||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..+.+
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 46899999998765 9999999999999999999999999999999999999 9999 88998765321 11233
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.++...+ .++.+|+.+....... .+. ....++.+..||+||+||++| .+|+++|
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4455544332 4778887653221100 000 012356788999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.|.++.. .++++||+++++.. |++ |++++.|+.+++.
T Consensus 154 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999 44555555432 25699999998765 443 7777778777664
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-27 Score=228.08 Aligned_cols=179 Identities=18% Similarity=0.295 Sum_probs=125.4
Q ss_pred ccEEEecCchhhhhhh-hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC-CCC---HH
Q 023106 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQD---PK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~-g~~---~~ 148 (287)
.++|+++||++.|++. .....+|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++ |.+ +.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 3479999999999530 001228999999999999999999999999999999999999 9999 8885 532 11
Q ss_pred H------HhhhCCCCCCCChhH---HHHHHHHHhcCCcee-------------eccCCcc------CCCCCCCceecccc
Q 023106 149 E------AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY-------------APSFDHG------VGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ~------~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~-------------~~~~~~~------~~~~~~~~LSgGek 200 (287)
. ...+..+++.+|... .+++.+|+.+..... ...+.-. ..++++.+||||||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 0 111223445555432 267888876421100 0011111 23678999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 513 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99988 8999999999 45556655432 24799999999876 443 6777778776
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 514 ~~~ 516 (520)
T TIGR03269 514 EIV 516 (520)
T ss_pred HHH
Confidence 653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-27 Score=216.46 Aligned_cols=179 Identities=15% Similarity=0.167 Sum_probs=130.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~--- 149 (287)
.+|+++|+++.|.+.. ..+|+|+||+|.+|+++||+|+||||||||+++|+|+.... .|++| +.++|.++..
T Consensus 79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3799999999995321 12899999999999999999999999999999999998510 14689 8999987642
Q ss_pred --HhhhCCCCCCCChhHH--HHHHHHHhcCCcee-e--------------ccCC-----ccCCCCCCCceeccccceEEE
Q 023106 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-A--------------PSFD-----HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~--------------~~~~-----~~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|.+.+ .++.+|+.++.... . .... ....+..+..|||||||||+|
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 1223345555554332 68889987542110 0 0000 012356788999999999998
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+.+.|+++.+. .|+|||+++.+.. |++ |++++.|++.++.
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 445555555533 4799999999876 555 8888999999985
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-27 Score=226.95 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=125.0
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----HhhhC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHARR 154 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~~~ 154 (287)
++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+.
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 478999998755 9999999999999999999999999999999999999 9999 8899975421 11233
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCcee-e---c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVY-A---P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~-~---~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+.+.+|... .+++.+|+.++.... . . .+. ....++.+.+|||||||||+| .+|
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 4555555432 268889987643110 0 0 000 012356789999999999998 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999 45555555533 24799999999876 444 777777876665
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-27 Score=205.47 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=110.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------- 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------- 149 (287)
+++ +|+|+|++.. + |+||+|.+ ++++|+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 455 8999998854 4 99999999 9999999999999999999999999 9999 8899875421
Q ss_pred HhhhCCCCCCCChhHH---HHHHHHHhcCCceeec------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
...+..+.+.+|...+ .++.+|+.+......+ .+. ....++.+.+||||||||+.| .+|
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 71 PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 1122334444544322 5777887653211000 010 012357889999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++|||| .+++.+.++.+ ..|++|||++++..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 9999999 45555555532 24799999998864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-27 Score=202.76 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=111.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARR 154 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~ 154 (287)
|+++|+++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++... ....
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 46899999998765 9999999999999999999999999999999999999 9999 88999764321 1122
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceeec----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYAP----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
.+.+.++... ..++.+|+.+....... .+. ....++.+.+|||||+|||+| .+|+++||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 153 (198)
T TIGR01189 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE 153 (198)
T ss_pred heEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3334443322 25778887653211100 000 012356889999999999988 8999999999
Q ss_pred -----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 216 -----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 216 -----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+++.|.++.+ ..|++||+...+
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 154 PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL 190 (198)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 44555555432 247999987644
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-27 Score=229.00 Aligned_cols=174 Identities=13% Similarity=0.166 Sum_probs=123.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeC-----------
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFD----------- 143 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~----------- 143 (287)
|+++|+++.|+++. +|+++||+|.+|+++||+||||||||||+++|+|++ + |++| +.++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 57899999998655 999999999999999999999999999999999996 7 8999 7776
Q ss_pred ------------CCCHH----------H---HhhhCCCCCCCCh-hH---HHHHHHHHhcCCcee-ec------------
Q 023106 144 ------------SQDPK----------E---AHARRGAPWTFNP-LL---LLNCLKNLRNQGSVY-AP------------ 181 (287)
Q Consensus 144 ------------g~~~~----------~---~~~~~~~~~~~~~-~~---~~tv~e~l~~~~~~~-~~------------ 181 (287)
|.++. . ...+..+.+.+|. .. .+++.+|+.+..... ..
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22110 0 0112335555553 22 257788886532110 00
Q ss_pred -cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHH
Q 023106 182 -SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 182 -~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.+. ....++.+.+|||||||||+| .+|++||||| .+++.|.++.. .+|+||||++.+.
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 000 012357889999999999988 8999999999 45555555532 2479999999987
Q ss_pred H---HHH----HHHhcCCCcHHHHHH
Q 023106 240 Q---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 240 ~---rvi----gr~i~~G~~~~~~~~ 258 (287)
. |++ |+++..|++.++...
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 5 444 777777888777554
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-27 Score=207.13 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=109.8
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
+.++++++.|++.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.+.... ..+.
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~--~~~~ 93 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSLL--GLGG 93 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchhh--cccc
Confidence 78999999999876 9999999999999999999999999999999999999 9999 88998764211 1111
Q ss_pred CCCCChhHHHHHHHHHhcCCceee---c-----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 157 PWTFNPLLLLNCLKNLRNQGSVYA---P-----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 157 ~~~~~~~~~~tv~e~l~~~~~~~~---~-----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
.+.. ..++.+|+.+...... . .+. ....++.+..|||||+||++| .+|+++||||
T Consensus 94 --~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 94 --GFNP--ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred --cCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111 1455666543211100 0 000 112356789999999999988 8999999999
Q ss_pred ----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 216 ----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.+++.+.++... +|++|||++++..
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 345555554332 4699999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-26 Score=185.42 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=134.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH--------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP-------- 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~-------- 147 (287)
.|+++++++.||... +|.||+|+.+.|+.+.++||+|+|||||++.|.-+.. |.+| ..+.|...
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 389999999999877 9999999999999999999999999999999998888 9999 66665421
Q ss_pred -HHHhhhCCCCCCCChhHH---HHHHHHHhcCCc-eeec---------------cCCccCCCCCCCceeccccceEEE--
Q 023106 148 -KEAHARRGAPWTFNPLLL---LNCLKNLRNQGS-VYAP---------------SFDHGVGDPVEDDILVGLQHKVVI-- 205 (287)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~-~~~~---------------~~~~~~~~~~~~~LSgGekqRv~I-- 205 (287)
.....++.++++||.+.+ +++.+|+-...- +... ..-....++.|-.|||||+|||+|
T Consensus 75 k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiar 154 (242)
T COG4161 75 KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHH
Confidence 122345667888887765 899999865321 1000 011235588999999999999999
Q ss_pred ---ecCCEEeEec-----------chHHHHHhccCCe---EEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 206 ---VDGNYLFLDG-----------GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ---~~p~lLllDE-----------~~~~~l~~~~~~~---i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
.+|++|++|| .+.+.|+++...+ ++|||..+.+.. +++ |++++.|+..-+
T Consensus 155 almmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 8999999999 4566777776665 599999999987 554 888888875543
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-27 Score=208.20 Aligned_cols=171 Identities=18% Similarity=0.180 Sum_probs=118.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHHH--
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKEA-- 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~~-- 150 (287)
++|+++||++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+ ++ |++| +.++|.++...
T Consensus 6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence 3799999999998654 99999999999999999999999999999999997 56 8899 88998764321
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCcee---------------------ec--cCCccCCCCCCC-ceeccccc
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVY---------------------AP--SFDHGVGDPVED-DILVGLQH 201 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~---------------------~~--~~~~~~~~~~~~-~LSgGekq 201 (287)
....++.+.+|...+ .++.+++.+..... .. .......++.+. .|||||+|
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 111233333343221 34555554321100 00 000012245565 59999999
Q ss_pred eEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcH
Q 023106 202 KVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 202 Rv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~ 253 (287)
||+| .+|+++|||| .+++.|.++.+ .+|++|||++++.. +++ |++++.|+++
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9988 8999999999 45566665543 24799999998753 332 6777778776
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-27 Score=209.38 Aligned_cols=171 Identities=18% Similarity=0.270 Sum_probs=124.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++|+++.|++ . +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468899999975 2 7999999999999999999999999999999999999 9999 89999765321 11234
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceee---c-----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYA---P-----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~---~-----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
+.+.++... ..++.+|+.+...... . .+. ....++.+..|||||+||++| .+|++++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 444444432 2577787765321110 0 000 112356788999999999998 8999999
Q ss_pred Eec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.++++.. ..|++||+++++.. |++ |++++.|+++++.
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999 45566666532 24699999999875 443 7777788766653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-27 Score=208.94 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=124.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i~~~g~~~~~ 149 (287)
++|+++|+++.|++.. +|+|+||++++|+++||+|+||||||||+++|+|+++ |+ +| +.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 4799999999998654 8999999999999999999999999999999999998 75 78 8888876521
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-------------cCC-----ccCCCCCCCceeccccce
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-------------SFD-----HGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-------------~~~-----~~~~~~~~~~LSgGekqR 202 (287)
...+..+.+.++...+ .++.+|+.+...... + .+. ....++.+..|||||+||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred cccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 1223334444443221 578888764311000 0 010 012356788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhcc---CC-eEEEEcChHHHHH---HHH---------HHHhcCC
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMF---DE-KWFIEVDLDTAMQ---RVL---------KRHISTG 250 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~---~~-~i~vtHd~~~~~~---rvi---------gr~i~~G 250 (287)
++| .+|+++|||| .+++.|.++. .. .|++|||++++.. |++ |+++..|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 988 8999999999 3455555542 22 4699999999876 332 4556678
Q ss_pred CcHHHH
Q 023106 251 KPPDVA 256 (287)
Q Consensus 251 ~~~~~~ 256 (287)
+++++.
T Consensus 239 ~~~~~~ 244 (261)
T PRK14258 239 LTKKIF 244 (261)
T ss_pred CHHHHH
Confidence 887764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-26 Score=208.68 Aligned_cols=174 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHH-
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPK- 148 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~- 148 (287)
.+|+++|+++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|++. | ++| +.++|.++.
T Consensus 15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence 3699999999998655 9999999999999999999999999999999999987 5 688 889886542
Q ss_pred ------HHhhhCCCCCCCChhH--HHHHHHHHhcCCceee---c------------cCC-----ccCCCCCCCceecccc
Q 023106 149 ------EAHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA---P------------SFD-----HGVGDPVEDDILVGLQ 200 (287)
Q Consensus 149 ------~~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~---~------------~~~-----~~~~~~~~~~LSgGek 200 (287)
....+.++.+.++... ..++.+|+.+...... . ... ....++.+..||+||+
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 1112333444444322 1477888865321100 0 000 0122467889999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|||+| .+|+++|||| .+.+.|.++.. .+|++||+++++.. |++ |++++.|+.+++
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99998 8999999999 34455555443 25799999999876 444 777788887766
Q ss_pred H
Q 023106 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 248 ~ 248 (265)
T PRK14252 248 F 248 (265)
T ss_pred H
Confidence 3
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-27 Score=229.90 Aligned_cols=177 Identities=18% Similarity=0.250 Sum_probs=128.0
Q ss_pred cEEEecCchhhhhhhh-------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~-------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
++|+++||++.|+... ....+|+++||+|++|+++||+||||||||||+++|+|++ |++| |.++|.++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence 4799999999995210 0123899999999999999999999999999999999987 4678 88999764
Q ss_pred HH-----H-hhhCCCCCCCChhH-----HHHHHHHHhcCCceee----------------ccCCc--cCCCCCCCceecc
Q 023106 148 KE-----A-HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYA----------------PSFDH--GVGDPVEDDILVG 198 (287)
Q Consensus 148 ~~-----~-~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~----------------~~~~~--~~~~~~~~~LSgG 198 (287)
.. . ..+..+++.+|... .+++.+|+.++..... ..+.- ...++.+.+||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 21 1 11334566666531 1588888875321100 01111 1236788999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCC
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~ 251 (287)
|||||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 509 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcC
Confidence 9999988 8999999999 45666665532 24799999999876 544 78778888
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
++++.
T Consensus 510 ~~~~~ 514 (529)
T PRK15134 510 CERVF 514 (529)
T ss_pred HHHHh
Confidence 77764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-26 Score=225.50 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=122.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++.|+ . +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 4799999998763 2 8999999999999999999999999999999999999 9999 8999875421 1
Q ss_pred hhhCCCCCCCChh---H---HHHHHHHHhcCCcee------------e-----------ccCCc--cCCCCCCCceeccc
Q 023106 151 HARRGAPWTFNPL---L---LLNCLKNLRNQGSVY------------A-----------PSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 151 ~~~~~~~~~~~~~---~---~~tv~e~l~~~~~~~------------~-----------~~~~~--~~~~~~~~~LSgGe 199 (287)
..+.++++.+|.. . .+++.+|+.+..... . ..+.- ...++++.+|||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGN 414 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHH
Confidence 1233455666541 1 268889887642110 0 00111 23467889999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
||||.| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..++.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999988 8999999999 44555555433 25799999999876 443 565555543
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-26 Score=202.02 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=115.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
+|+++|+++.|++......+|+++||++.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37899999999752111238999999999999999999999999999999999999 9999 88999876321
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeec---------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP---------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
..+.++.+.++...+ .++.+|+.+....... .+. ....++.+.+||+||+||++|
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 123445556655433 5778887654221100 000 012356789999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTA 238 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~ 238 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++..
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8999999999 34555555442 246999999853
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-26 Score=207.98 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=127.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccc-eeeCCCCHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKA-SSFDSQDPKE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~G-i~~~g~~~~~ 149 (287)
+++.++++++.|++.. +|+++||++++|+++||+|+||||||||+++|+|+++ | ++| +.++|+++..
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 4689999999998765 9999999999999999999999999999999999997 6 689 8999986532
Q ss_pred -----HhhhCCCCCCCChhHH--HHHHHHHhcCCceee--c-----------cCC--c---cCCCCCCCceeccccceEE
Q 023106 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--P-----------SFD--H---GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--~-----------~~~--~---~~~~~~~~~LSgGekqRv~ 204 (287)
...+..+.+.+|...+ .++.+|+.++..... . .+. . ...++.+..||+||+||++
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred cccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 1223345555554322 688888876432110 0 000 0 0123567889999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HH--H----------HHHhcCCC
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L----------KRHISTGK 251 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--i----------gr~i~~G~ 251 (287)
| .+|+++|||| .+++.|.++.. ..|++|||++++.. |+ + |++++.|+
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCC
Confidence 8 8999999999 45666665543 24699999998875 32 2 56667787
Q ss_pred cHHHH
Q 023106 252 PPDVA 256 (287)
Q Consensus 252 ~~~~~ 256 (287)
++++.
T Consensus 240 ~~~~~ 244 (261)
T PRK14263 240 TAQIF 244 (261)
T ss_pred HHHHH
Confidence 77664
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-26 Score=226.09 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=122.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|..
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~~-------- 382 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSENA-------- 382 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCce--------
Confidence 4799999999998765 8999999999999999999999999999999999999 9999 8787742
Q ss_pred CCCCCCChh-----HHHHHHHHHhcCCce---e------eccCC--ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 GAPWTFNPL-----LLLNCLKNLRNQGSV---Y------APSFD--HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~~~~~~~~~-----~~~tv~e~l~~~~~~---~------~~~~~--~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+++.+|.. ..+++.+++...... . ...+. ....++.+.+|||||||||+| .+|++|||
T Consensus 383 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 462 (530)
T PRK15064 383 NIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462 (530)
T ss_pred EEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 122222221 114566666432100 0 00111 123467899999999999988 89999999
Q ss_pred ec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 214 DG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
|| .+++.|.++...+|++|||++++.. |++ |+++ ..|++.++..
T Consensus 463 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99 4555566553345799999999876 443 6666 5777766543
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-26 Score=198.99 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=109.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
||+++|+++.|++.. ++ ++||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++.... ...
T Consensus 1 ~l~~~~l~~~~~~~~----l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~-~~~ 71 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIA-KPY 71 (195)
T ss_pred CeEEEEeeEEECCcE----EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhh-hhh
Confidence 478999999997643 55 4999999999999999999999999999999999 9999 899998753321 111
Q ss_pred CCCCCCh---hHHHHHHHHHhcCCceee---------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 156 APWTFNP---LLLLNCLKNLRNQGSVYA---------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 156 ~~~~~~~---~~~~tv~e~l~~~~~~~~---------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
+.+.++. ....++.+|+.+...... ..+. ....++.+..||+||+||+.| .+|+++||||
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2222222 122677788765321110 0111 122356788999999999988 8999999999
Q ss_pred ---------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+++.+.+..+ ..+++|||++.+..
T Consensus 152 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 152 TNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 34444443222 24699999987654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-26 Score=226.43 Aligned_cols=164 Identities=14% Similarity=0.052 Sum_probs=118.2
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
||+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.+++..
T Consensus 4 ~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~~-------- 68 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPGI-------- 68 (552)
T ss_pred EEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC--------
Confidence 799999999997 544 8999999999999999999999999999999999999 9999 7776521
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCce---------------eec-----------------------------------
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSV---------------YAP----------------------------------- 181 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~---------------~~~----------------------------------- 181 (287)
.+++.+|... .+++.+|+.++... ...
T Consensus 69 ~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 1233333221 24666666543110 000
Q ss_pred cCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HH
Q 023106 182 SFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 182 ~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rv 242 (287)
.+.....++.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++.+.. ++
T Consensus 149 ~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 149 ALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 000011356789999999999988 8999999999 3445555554446799999999876 44
Q ss_pred H----HHHh-cCCCcHHH
Q 023106 243 L----KRHI-STGKPPDV 255 (287)
Q Consensus 243 i----gr~i-~~G~~~~~ 255 (287)
+ |+++ ..|+..++
T Consensus 229 ~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSW 246 (552)
T ss_pred EEEECCEEEEecCCHHHH
Confidence 4 6654 56776653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-26 Score=206.99 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=123.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc-c-CCCcc-eeeCCCCHHHH----
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKA-SSFDSQDPKEA---- 150 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~-~-~p~~G-i~~~g~~~~~~---- 150 (287)
-+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|++.. + .|++| +.++|.++...
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46899999997655 89999999999999999999999999999999999741 0 13689 89999765321
Q ss_pred -hhhCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCc-----cCCCCCCCceeccccceEEE-
Q 023106 151 -HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDH-----GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~-----~~~~~~~~~LSgGekqRv~I- 205 (287)
..+.++.+.+|...+ .++.+|+.+...... ..+.- ...++.+..|||||+||++|
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 123345555554322 367777765311100 00000 01245678999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.|.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999 34555555432 24799999998875 444 7777778776653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-26 Score=229.90 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=134.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 463 ~I~~~~vsf~Y~~~~--~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE--TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCC--ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996421 138999999999999999999999999999999999999 9999 99999876542 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|+..+ .|+.||+.++.. .... ....+ .-......||||||||++|
T Consensus 538 r~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 4456677776654 699999988643 1000 00000 0112346799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|+++|||| .+.+.+.++.+ ..|+|||+++.+.. |++ |++++.|+.+++...
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 8999999999 45556666543 35799999998866 554 888899998887543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-26 Score=225.90 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=132.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 341 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCC--CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 499999999996521 128999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc--eee----------------ccCCccC---CCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS--VYA----------------PSFDHGV---GDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~--~~~----------------~~~~~~~---~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+.+|+..+ .|+.+|+.++.. ... ..+..+. .......||||||||++|
T Consensus 416 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 416 RNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred HhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 3346666666543 689999987531 100 0011111 012345699999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|+++|||| .+.+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++...
T Consensus 496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 8999999999 45566666543 35799999988876 555 788899998888643
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-26 Score=195.21 Aligned_cols=139 Identities=22% Similarity=0.305 Sum_probs=102.9
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---HhhhC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHARR 154 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~~ 154 (287)
+++||++.|++.. +|+++||++.+|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .....
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~ 73 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELAR 73 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHH
Confidence 4688999997654 8999999999999999999999999999999999999 9999 8899875421 11112
Q ss_pred CCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chH
Q 023106 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVW 218 (287)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~ 218 (287)
.+.+.+| .++.+.+. ...++.+..||+||+||++| .+|+++|||| .+.
T Consensus 74 ~i~~~~q------~l~~~gl~----------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 137 (180)
T cd03214 74 KIAYVPQ------ALELLGLA----------HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137 (180)
T ss_pred HHhHHHH------HHHHcCCH----------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 2333333 11211111 11235678999999999988 8999999999 344
Q ss_pred HHHHhccC----CeEEEEcChHHHHH
Q 023106 219 KDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+.+.++.+ ..|++||+++++..
T Consensus 138 ~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 138 ELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 55555433 24799999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-26 Score=202.22 Aligned_cols=164 Identities=16% Similarity=0.173 Sum_probs=115.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
++.++||+++|.+......+|+++||+|++|++++|+||||||||||+++|+|+++...|++| +.++|.++.....+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 578999999996531012389999999999999999999999999999999999751114788 8899976543333444
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeec---------------cCC----ccCCCCCCCceeccccceEEE-----ecC
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAP---------------SFD----HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------~~~----~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.+.+|...+ +++.+|+.+....... ..+ ....++.+..||+||+|||+| .+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 5555554332 5888888753211100 000 012356788999999999988 899
Q ss_pred CEEeEec-----------chHHHHHhccC---CeEEEEcCh-HHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDL-DTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~-~~~~~ 240 (287)
+++|||| .+++.+.++.+ ..+++||++ +++..
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 9999999 45555555433 246999998 45554
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-26 Score=197.97 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=102.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----HhhhCCCCCCCChhH----H
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----AHARRGAPWTFNPLL----L 165 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~~~~~~~~~~~~~~~----~ 165 (287)
+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...+.++.+.+|... .
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 8999999999999999999999999999999999999 9999 8899876421 122334555555431 1
Q ss_pred HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec----------
Q 023106 166 LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---------- 215 (287)
Q Consensus 166 ~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---------- 215 (287)
.++.+|+.+...... . .+. ....++.+.+|||||+||++| .+|+++||||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 588888876321100 0 000 112367889999999999988 8999999999
Q ss_pred -chHHHHHhccC---CeEEEEcChHH
Q 023106 216 -GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.+++.|.++.+ .++++|||+++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecccc
Confidence 45555555432 24699999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-26 Score=203.71 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=124.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
+..|+++|+++.|++.. ..+|+++||+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++...
T Consensus 17 ~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 17 GGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH 91 (257)
T ss_pred CceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence 34699999999997521 128999999999999999999999999999999999999 9999 89999865431
Q ss_pred hhhCCCCCCCChhHH--HHHHHHHhcCCceee---------ccCC----------ccCCCCCCCceeccccceEEE----
Q 023106 151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------PSFD----------HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------~~~~----------~~~~~~~~~~LSgGekqRv~I---- 205 (287)
..+..+.+.+|...+ .++.+|+........ .... ....+..+..||+||+||++|
T Consensus 92 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 92 TLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred HHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 122334444443222 466666654211000 0000 001234567899999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.+.++... .|++||+++.+.. |++ |++++.|+++++..
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 8999999999 344445443222 4699999999876 443 77777888777643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-27 Score=205.94 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=100.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhhCCCCCCC-Ch---hHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HARRGAPWTF-NP---LLLLNC 168 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~~~~~~~~-~~---~~~~tv 168 (287)
+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..+..+.+.+ +. ...+++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 8999999999999999999999999999999999999 9999 88888754221 1122233333 11 112566
Q ss_pred HHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 169 LKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 169 ~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
.+++.+...... ..+. ....++.+..|||||+||+.| .+|+++|||| .+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 677654221100 0000 112356788999999999988 8999999999 45
Q ss_pred HHHHHhccC----CeEEEEcChHHHHH
Q 023106 218 WKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 218 ~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+.|.++.+ .+|++|||++++..
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 555655532 24699999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-26 Score=203.95 Aligned_cols=168 Identities=19% Similarity=0.275 Sum_probs=131.3
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------hhh
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-------HAR 153 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-------~~~ 153 (287)
|+.+.+|+. +| +++|.++...++||-|+||||||||+|+|+|+.. |+.| |.++|....+. ..+
T Consensus 5 ~~~~~lG~~-----~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNF-----AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCce-----EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 356667664 33 6899999888999999999999999999999999 9999 88998743221 234
Q ss_pred CCCCCCCChhHH---HHHHHHHhcCCcee-eccCCc--------cCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 154 RGAPWTFNPLLL---LNCLKNLRNQGSVY-APSFDH--------GVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~---~tv~e~l~~~~~~~-~~~~~~--------~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.++|+||+..+ ++|..|+.++.... ...|+. ...+++|..|||||||||+| ..|++|||||
T Consensus 76 RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP 155 (352)
T COG4148 76 RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred heeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc
Confidence 558899998775 89999999986554 223332 13478999999999999999 8999999999
Q ss_pred ----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 216 ----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 216 ----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
+++..++.+.++ .+||||.++++.+ +++ |++.+.|+.+++...
T Consensus 156 LaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 555555555554 3699999999997 544 788889998888443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-26 Score=213.32 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=136.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|+++. ++|+++||+|++|+.|||+|+|||||||++|+|.+.+. .+| |.+||+++... -.
T Consensus 351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhChHHh
Confidence 499999999998765 39999999999999999999999999999999999985 678 99999998654 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
++-+++++|+..+ .|++.||.++..-.. ..+..+ ..-.....|||||||||+|
T Consensus 424 R~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred hhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 4446777777654 799999998743210 011111 1123456799999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++++|| ++++.+.+.... .|+|-|+++++.. +++ |++.+.|+..+++.
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 8999999999 566666664433 4799999999998 666 78888899888765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-26 Score=208.75 Aligned_cols=178 Identities=20% Similarity=0.286 Sum_probs=138.9
Q ss_pred ccEEEecCchhhhhhh-------hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-------~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++++|...|.-+ .....+++++||++.+|+-+||+|.+|||||||-++|.++++ +. | |.|+|++
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~-G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQ-GEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cC-ceEEECCcc
Confidence 3489999999888422 223568999999999999999999999999999999999997 65 7 9999987
Q ss_pred HHHH------hhhCCCCCCCChhHH-----HHHHHHHhcCCceeeccCCc------------------cCCCCCCCceec
Q 023106 147 PKEA------HARRGAPWTFNPLLL-----LNCLKNLRNQGSVYAPSFDH------------------GVGDPVEDDILV 197 (287)
Q Consensus 147 ~~~~------~~~~~~~~~~~~~~~-----~tv~e~l~~~~~~~~~~~~~------------------~~~~~~~~~LSg 197 (287)
+... ..+..+..+||++.- +++.+.|..+..++.+..+. ...++||+++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 6321 223335556665431 78888888887766544332 234799999999
Q ss_pred cccceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 198 GLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 198 GekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
||+||++| .+|.+++||| .++++++++.+. -+|||||+..+.. +++ |+++++|
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 99999998 8999999999 456666665443 2699999999977 554 8999999
Q ss_pred CcHHHH
Q 023106 251 KPPDVA 256 (287)
Q Consensus 251 ~~~~~~ 256 (287)
+.+++.
T Consensus 510 ~~~~if 515 (534)
T COG4172 510 PTEAVF 515 (534)
T ss_pred CHHHHh
Confidence 999885
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-26 Score=249.07 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=134.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--Hhh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHA 152 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~ 152 (287)
.+|+++||+|.|++. ...+|+|+||+|++||++||+||||||||||+|+|+|+++ |++| +.++|.++.. ...
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence 479999999999752 1129999999999999999999999999999999999999 9999 8999987532 112
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.+++.+|... .+++.|++.+...+.. +. +. ....++.+.+|||||||||.| .+|+
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 333555555433 2788888876432211 00 00 113467899999999999987 8999
Q ss_pred EEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
++|||| .+++.|.++.+. +|++||+++++.. |++ |+++..|+++++...
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999 566767665432 4699999999986 544 788888888887544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-26 Score=228.94 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=130.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ...+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| |.+||.++... ..
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997532 1238999999999999999999999999999999999999 9999 99999887542 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|++.+ .|+.||+.++..-.. ..+..+.. ......||||||||++|
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 3445666665543 689999987632100 00111111 12345799999999998
Q ss_pred ecCCEEeEec-------chHHHHHh---ccC-CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-------GVWKDVSS---MFD-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-------~~~~~l~~---~~~-~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| +..+.+.+ ..+ ..|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 8999999999 22222222 122 24799999998876 554 88889999888754
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-26 Score=228.64 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=131.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|++.. .+|+|+||+|++|+.+||+|+||||||||+++|+|++. |++| +.++|.++... ..
T Consensus 473 ~I~~~~vsf~y~~~~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYGS---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCCC---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 499999999997421 38999999999999999999999999999999999999 9999 99999887542 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------c-------CCccC---CCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------S-------FDHGV---GDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------~-------~~~~~---~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|+..+ .|+.||+.++...... . +..+. .......||||||||++|
T Consensus 547 r~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal 626 (708)
T TIGR01193 547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL 626 (708)
T ss_pred HHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence 3446666666543 6999999986211000 0 00011 122456799999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC-eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE-KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~-~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.|.++.+. .|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 627 l~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 627 LTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred hhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 455556554333 4799999998866 554 88889999888754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-26 Score=223.23 Aligned_cols=174 Identities=19% Similarity=0.252 Sum_probs=134.2
Q ss_pred EEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
-|+++||++.|++ .. +|+|+||++++|+.+||+||||||||||+++|.++++ |++| |.+||.++... .
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 4999999999984 45 9999999999999999999999999999999999999 9999 88899887542 2
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceee--------------------c-cCCccCCCCCCCceeccccceEEE---
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------P-SFDHGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------~-~~~~~~~~~~~~~LSgGekqRv~I--- 205 (287)
.+..++.++|+..+ -|+.+|+.++..-.. | .++... ......||||||||++|
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~v-ge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV-GERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccee-cCCCccCCHHHHHHHHHHHH
Confidence 23445566666544 689999998853100 0 011111 12345799999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++|+||| .+.+.+.++.+ .+++|+|.+..+.. +++ |++++.|+.+++...
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 8999999999 34455544443 35799999999987 555 898999999998764
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-26 Score=195.17 Aligned_cols=150 Identities=12% Similarity=0.170 Sum_probs=105.4
Q ss_pred EEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
|+++||++.|++..+ ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g~---------- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPGS---------- 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcCE----------
Confidence 478999999976410 0128999999999999999999999999999999999999 9999 888881
Q ss_pred CCCCCChhH--HHHHHHHHhcCCceeec----------------cCC---ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 156 APWTFNPLL--LLNCLKNLRNQGSVYAP----------------SFD---HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 156 ~~~~~~~~~--~~tv~e~l~~~~~~~~~----------------~~~---~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+.+.++... ..++.+|+.+....... ... ....+..+..||+||+||++| .+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 222222221 14677777654221100 000 011234578899999999998 8999
Q ss_pred EEeEec-----------chHHH-HHhccCC---eEEEEcChHHHHH
Q 023106 210 YLFLDG-----------GVWKD-VSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 210 lLllDE-----------~~~~~-l~~~~~~---~i~vtHd~~~~~~ 240 (287)
++|||| .+++. +.+..+. +|++||+++.+..
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 999999 23342 3333222 4699999988764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-26 Score=222.65 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=131.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 338 ~i~~~~v~f~y~~~~--~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 338 SLTLNNVSFTYPDQP--QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred eEEEEEEEEECCCCC--CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 599999999996521 128999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------ccC---CccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------PSF---DHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~~~---~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+++|+..+ .|+.+|+.++..-.. ..+ ..+.. ......||||||||++| .
T Consensus 413 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~ 492 (574)
T PRK11160 413 RQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492 (574)
T ss_pred HhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3345566665544 688999987532100 000 00001 12456799999999998 9
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|+++|||| .+.+.+.++.+. +|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 493 ~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999 455566655433 5799999998876 544 88888999888754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-26 Score=223.97 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=131.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++|+++.|++.. .+|+|+||++++|+++||+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 340 ~i~~~~v~f~y~~~~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCCC---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 499999999996421 38999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCccC---CCCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+.+|+..+ -|+.+|+.++...... ....+. .......|||||+||++| .
T Consensus 414 ~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 414 RQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 3345556665543 5889999886421000 000011 112356799999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+.+.+.++.. .+|+|||+++.+.. +++ |++++.|+.+++.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999 45555665543 35799999988877 555 8888999999875
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-25 Score=198.32 Aligned_cols=172 Identities=19% Similarity=0.147 Sum_probs=114.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCcc-eeeCCCCHHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~G-i~~~g~~~~~---- 149 (287)
||+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|++ + |++| +.++|.++..
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 488999999998755 999999999999999999999999999999999994 7 8899 8899976532
Q ss_pred HhhhCCCCCCCChhHH---HHHHHH-------HhcCCcee-ec---------------cCCccCCCCCCC-ceeccccce
Q 023106 150 AHARRGAPWTFNPLLL---LNCLKN-------LRNQGSVY-AP---------------SFDHGVGDPVED-DILVGLQHK 202 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~-------l~~~~~~~-~~---------------~~~~~~~~~~~~-~LSgGekqR 202 (287)
...+.++.+.++.... .+...+ +....... .. .......++.+. .|||||+||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 1122334444443221 122222 11110000 00 000111234443 799999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH----HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~ 255 (287)
|+| .+|++||||| .+.+.+.++.+ .+|++|||++++.. +++ |+++..|+++.+
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 988 8999999999 34444444433 24699999998764 222 666677776643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-25 Score=217.72 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=115.6
Q ss_pred cEEEecCchhhhh---hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHHH-
Q 023106 76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPKE- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~---~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~~- 149 (287)
++|+++|+++.|+ +.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ | ++| +.++|.++..
T Consensus 256 ~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIR 328 (500)
T ss_pred ceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCC
Confidence 3799999999993 333 8999999999999999999999999999999999997 7 789 8899875421
Q ss_pred ---HhhhCCCCCCCChhH------HHHHHHHHhcCCc--ee----e-------------ccCCc--cCCCCCCCceeccc
Q 023106 150 ---AHARRGAPWTFNPLL------LLNCLKNLRNQGS--VY----A-------------PSFDH--GVGDPVEDDILVGL 199 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~------~~tv~e~l~~~~~--~~----~-------------~~~~~--~~~~~~~~~LSgGe 199 (287)
...+.++++.+|... .+++.+|+.+... .. . ..+.- ...++++.+|||||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 122344555555531 1577777765321 00 0 01111 12367889999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
||||+| .+|++||||| .+++.+.++.+. +|++|||++++..
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~ 468 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLG 468 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 999988 8999999999 344445554332 4799999999976
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-26 Score=223.45 Aligned_cols=173 Identities=16% Similarity=0.265 Sum_probs=128.6
Q ss_pred EEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
-|+++||++.| ++.. +|+|+||+|++|+++||+||||||||||+++|+|++ |++| |.++|.++.. ..
T Consensus 349 ~i~~~~vsf~~~~~~~----vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPDGKT----LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHH
Confidence 49999999655 4433 899999999999999999999999999999999987 4688 9999987543 22
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCccCC---CCCCCceeccccceEEE----
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHGVG---DPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~~~---~~~~~~LSgGekqRv~I---- 205 (287)
.+..+.+++|+..+ .|+.|||.++.. .... .+..+.. ......||||||||++|
T Consensus 421 lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 421 WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 23446666666544 689999998732 1000 0101111 12345799999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+.++.+ .+|+|||.++.+.. +++ |++++.|+.+++..
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 8999999999 45556666543 25799999988876 554 88889999888864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-26 Score=201.54 Aligned_cols=153 Identities=18% Similarity=0.279 Sum_probs=106.9
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhH---HHHHHHHH
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLL---LLNCLKNL 172 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~---~~tv~e~l 172 (287)
|+++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++....... .+.+|... .+++.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~--~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDR--MVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhh--eEEecCcccCCCCCHHHHH
Confidence 578999999999999999999999999999999999 9999 889987643211111 23333222 25777887
Q ss_pred hcCCc--ee-ec-------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 173 RNQGS--VY-AP-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 173 ~~~~~--~~-~~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
.+... .. .. .+. ....++.+.+|||||||||.| .+|+++|||| .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 155 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 65311 00 00 000 012357889999999999988 8999999999 4555
Q ss_pred HHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHH
Q 023106 220 DVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 220 ~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~ 254 (287)
.|.++.+ .+|++|||++++.. |++ |+++..|...+
T Consensus 156 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 156 ELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 5655532 24799999998865 443 66666665443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-26 Score=245.51 Aligned_cols=176 Identities=17% Similarity=0.224 Sum_probs=134.5
Q ss_pred cEEEecCchhhhh--hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--
Q 023106 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-- 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~--~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-- 150 (287)
..|+++||+|.|+ ++. +|+|+||++.+|+++||+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 927 ~~L~I~nLsK~y~~~~k~----aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRP----AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCCCce----EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHH
Confidence 4799999999995 333 8999999999999999999999999999999999999 9999 88999865321
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..++.+++.+|... .+|+.|++.+...+.... +. ....++.+.+|||||||||+| .+
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 22334555555433 278999987753322100 00 113367899999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
|+++|||| .+++.|+++.+. +|++|||++++.. |++ |+++..|++..+...
T Consensus 1080 PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1080 AKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999 567777776433 4699999999976 544 788888988877543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-25 Score=183.15 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=94.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.. .+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~--------~i 65 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV--------KI 65 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE--------EE
Confidence 46889999997654 8999999999999999999999999999999999999 9999 8888731 12
Q ss_pred CCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 157 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
.+.++ ||+||+||++| .+|+++|+|| .+.+.
T Consensus 66 ~~~~~---------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 112 (144)
T cd03221 66 GYFEQ---------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA 112 (144)
T ss_pred EEEcc---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 22222 99999999988 8999999999 44555
Q ss_pred HHhccCCeEEEEcChHHHHH
Q 023106 221 VSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 221 l~~~~~~~i~vtHd~~~~~~ 240 (287)
++++....+++||+.+++..
T Consensus 113 l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 113 LKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHcCCEEEEEECCHHHHHH
Confidence 55553345799999998854
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-25 Score=222.13 Aligned_cols=174 Identities=23% Similarity=0.291 Sum_probs=130.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. .+|+|+||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 334 ~I~~~~vsf~y~~~~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNSR---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCCC---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997522 28999999999999999999999999999999999999 9999 89999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.+|+.++.. .... ..+.+.. ......|||||+||++|
T Consensus 408 r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall 487 (588)
T PRK13657 408 RRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487 (588)
T ss_pred HhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3346666666544 689999988632 1000 0111111 12345699999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+++.+.++.+ .+|+|||+.+.+.. +++ |++++.|+.+++.
T Consensus 488 ~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 488 KDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999999 45566666543 35799999988766 554 7888889888775
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-25 Score=217.00 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=115.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~ 153 (287)
.|+++||+++|++.. .+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..+
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 499999999997532 28999999999999999999999999999999999999 9999 99999876543 223
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCcee-ec----------------cCCccCC---CCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-AP----------------SFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-~~----------------~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+++|++.+ -|+.||+.++..-. .. ....+.. ......||||||||++| .
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 446677777654 68999999863210 00 0000111 12345699999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcCh
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDL 235 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~ 235 (287)
+|+++|||| .+.+.+.++... +|+|||++
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999 455666665433 57999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-25 Score=190.27 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=125.3
Q ss_pred ccEEEecCchhhhhhh-hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~-~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
|.+|+++||+.+.+++ . +|++|||+|++||+++|+||||||||||.+.|+|.-. .-+++| |.++|+++..
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence 4589999999999874 5 9999999999999999999999999999999999752 126789 9999998643
Q ss_pred -HhhhCCCCCCCChhHH---HHHHHHHhcCCce------eec-------------cCCccCCCCCC-CceeccccceEEE
Q 023106 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSV------YAP-------------SFDHGVGDPVE-DDILVGLQHKVVI 205 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~------~~~-------------~~~~~~~~~~~-~~LSgGekqRv~I 205 (287)
.+.+.|+...||.+.- .++.+.+...... ..+ .++....+|.+ ..+|||||+|..|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 3667777667765531 2333333221100 001 11122233443 3589999999766
Q ss_pred -----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH------HHH--HHHhcCCCcHHHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~------rvi--gr~i~~G~~~~~~~~ 258 (287)
.+|++.|||| .+-+.+..+.+. .++|||....+.. .++ ||++..|.+ +++..
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 9999999999 222233333333 4799999988876 222 999999999 66543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-25 Score=218.67 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=114.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| |.+++ ..
T Consensus 323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~-~~------- 387 (556)
T PRK11819 323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGE-TV------- 387 (556)
T ss_pred eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC-ce-------
Confidence 4799999999998765 9999999999999999999999999999999999999 9999 77643 22
Q ss_pred CCCCCCChh-H---HHHHHHHHhcCCceee------------ccCCc--cCCCCCCCceeccccceEEE-----ecCCEE
Q 023106 155 GAPWTFNPL-L---LLNCLKNLRNQGSVYA------------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNYL 211 (287)
Q Consensus 155 ~~~~~~~~~-~---~~tv~e~l~~~~~~~~------------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lL 211 (287)
.+++.+|.. . .+++.+++.+...... ..+.. ...++.+.+|||||||||+| .+|++|
T Consensus 388 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 388 KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 133333332 1 1578888765422110 01111 12367899999999999988 899999
Q ss_pred eEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 212 FLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
|||| .+++.|.++...+|++|||++++..
T Consensus 468 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~ 507 (556)
T PRK11819 468 LLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDR 507 (556)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 9999 4556666654446799999998876
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-25 Score=194.63 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=114.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----H-
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----P- 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~- 147 (287)
+++|+++||+..|+++. +|+|+|++|++||..+|+||||||||||+++++|.+. |++| +.+.|+. .
T Consensus 29 ~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 29 EPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred cceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcch
Confidence 45799999999999988 9999999999999999999999999999999999999 9888 7777753 2
Q ss_pred HHHhhhCCCCCCC--Chh-HHHHHHHHHhcCCceeec----cCC----------------ccCCCCCCCceeccccceEE
Q 023106 148 KEAHARRGAPWTF--NPL-LLLNCLKNLRNQGSVYAP----SFD----------------HGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 148 ~~~~~~~~~~~~~--~~~-~~~tv~e~l~~~~~~~~~----~~~----------------~~~~~~~~~~LSgGekqRv~ 204 (287)
.+.+.+.|+.... +.. .-.++.+-+..+..-... .++ ....+++...||-||||||.
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL 181 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH
Confidence 3333444422110 000 013344444332211111 111 12457899999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC-----eEEEEcChHHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE-----KWFIEVDLDTAMQ 240 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~-----~i~vtHd~~~~~~ 240 (287)
| .+|.+||||| .+++.+.++... .+||||..+++..
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~ 238 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP 238 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc
Confidence 8 8999999999 344555555443 5899999999876
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-25 Score=218.68 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=125.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++++++|++.. . +++|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|+++.. .
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 36899999832 2 8999999999999999999999999999999999999 9999 8898875421 1
Q ss_pred hhhCCCCCCCChhH------HHHHHHHHhcCCcee--------e------------ccCCc--cCCCCCCCceeccccce
Q 023106 151 HARRGAPWTFNPLL------LLNCLKNLRNQGSVY--------A------------PSFDH--GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 151 ~~~~~~~~~~~~~~------~~tv~e~l~~~~~~~--------~------------~~~~~--~~~~~~~~~LSgGekqR 202 (287)
..+.++++.+|... .+++.+|+.++.... . ..+.. ...++.+.+||||||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 22344555555431 267888876532100 0 01111 23467899999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|.| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|.+++..
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 988 8999999999 44555555443 25799999999986 443 6777777776654
Q ss_pred HH
Q 023106 257 KW 258 (287)
Q Consensus 257 ~~ 258 (287)
..
T Consensus 485 ~~ 486 (501)
T PRK11288 485 ER 486 (501)
T ss_pred HH
Confidence 33
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-25 Score=219.05 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=114.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~-~~------ 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGE-TV------ 385 (552)
T ss_pred CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECC-ce------
Confidence 35899999999998765 9999999999999999999999999999999999999 9999 76643 32
Q ss_pred CCCCCCCChh----HHHHHHHHHhcCCceee------------ccCCc--cCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPL----LLLNCLKNLRNQGSVYA------------PSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~----~~~tv~e~l~~~~~~~~------------~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
.+++.+|.. ..+++.+++.++..... ..+.. ...++.+.+|||||||||+| .+|++
T Consensus 386 -~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 386 -KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred -EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 123333321 12578888776432110 01111 12367889999999999988 89999
Q ss_pred EeEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
||||| .+++.|.++...+|++|||++++..
T Consensus 465 llLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~ 505 (552)
T TIGR03719 465 LLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDR 505 (552)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 99999 4566666654446799999999876
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-26 Score=200.52 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=117.3
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---HhhhC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHARR 154 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~~ 154 (287)
+++||++. . +|+++||+|.+|+++||+|+||||||||+++|+|+++ + +| +.++|.++.. .....
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHhh
Confidence 57888875 2 7899999999999999999999999999999999875 5 78 8899976421 11122
Q ss_pred CCCCCCChh---HHHHHHHHHhcCCceeecc-------------CC-ccCCCCCCCceeccccceEEE-----e------
Q 023106 155 GAPWTFNPL---LLLNCLKNLRNQGSVYAPS-------------FD-HGVGDPVEDDILVGLQHKVVI-----V------ 206 (287)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~------ 206 (287)
.+.+.+|.. ...++.+|+.+........ +. ....++.+..|||||+||+.| .
T Consensus 70 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred heEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 234444432 1268888887653211100 00 012357889999999999988 4
Q ss_pred -cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 -DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 -~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|+++|||| .+.+.|.++.+ .+|++|||++++.. +++ |++++.|+.+++.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 669999999 44555555432 24699999998866 443 7777788877663
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-26 Score=217.04 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=121.5
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++++++||++.|++.. ...+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.+.. ...
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~---i~~ 92 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAAL---IAI 92 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeee---EEe
Confidence 3689999999887632 1238999999999999999999999999999999999999 9999 888886421 000
Q ss_pred CCCCCCChhHHHHHHHHHhcCCceeec--------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 155 GAPWTFNPLLLLNCLKNLRNQGSVYAP--------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~~~~~--------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
.. .+ ...+++.+|+.+....... .+. ....++.+..|||||+||++| .+|++||||
T Consensus 93 ~~--~l--~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 93 SS--GL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred cc--cc--CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 00 01 1114666776542211000 000 112357889999999999988 899999999
Q ss_pred c-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 215 G-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 215 E-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
| .+++.|.++.+ .+|++|||++++.. +++ |+++..|+++++..
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9 34555555432 24699999998876 443 77778888877654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-25 Score=219.11 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=124.1
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++|+++ . +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| |.++|.++.. .
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999984 2 7999999999999999999999999999999999999 9999 8899865421 1
Q ss_pred hhhCCCCCCCChh------HHHHHHHHHhcCCc--ee-----e-------------ccCCc--cCCCCCCCceeccccce
Q 023106 151 HARRGAPWTFNPL------LLLNCLKNLRNQGS--VY-----A-------------PSFDH--GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 151 ~~~~~~~~~~~~~------~~~tv~e~l~~~~~--~~-----~-------------~~~~~--~~~~~~~~~LSgGekqR 202 (287)
..+.++++.+|.. ..+++.+|+.+... .. . ..+.- ...++.+.+||||||||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 2234566666653 12678888865311 00 0 00111 23467899999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHH
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~ 255 (287)
|.| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|++.++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 988 8999999999 45566666543 24799999999876 443 677777776665
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-25 Score=194.65 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=109.5
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-------
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA------- 150 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~------- 150 (287)
.+.|+.+.|++.. .+++++||+|.+|++++|+||||||||||+++|+|+++ |++| +.++|.++...
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 4678899997432 28999999999999999999999999999999999999 9999 88998765321
Q ss_pred hhhCCCCCCCChhHH--HHHHHHHhcCCceeecc-------C--C----------ccCCCCCCCceeccccceEEE----
Q 023106 151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYAPS-------F--D----------HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~-------~--~----------~~~~~~~~~~LSgGekqRv~I---- 205 (287)
..+.++.+.+|...+ .++.+|+.+........ . . ....+..+..|||||+|||.|
T Consensus 76 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral 155 (218)
T cd03290 76 RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARAL 155 (218)
T ss_pred hhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHH
Confidence 122334455554322 57888887643211000 0 0 001235688999999999988
Q ss_pred -ecCCEEeEec-----------chHH--HHHhccC---CeEEEEcChHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWK--DVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~--~l~~~~~---~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+++ .+..+.+ ..|++||+++.+.
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 8999999999 2333 2222222 2479999998864
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-25 Score=220.52 Aligned_cols=175 Identities=21% Similarity=0.248 Sum_probs=129.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|++.. .+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997522 28999999999999999999999999999999999999 9999 89999875431 12
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-ec----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-AP----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|...+ .|+.+|+.++..-. .. ....+ ........||||||||++|
T Consensus 408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 2334455554332 68889998763210 00 00000 1123567799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.|.++... +|+|||+.+.+.. +++ |++++.|+.+++..
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 8999999999 445555555332 5799999998865 544 78888898887754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-25 Score=208.38 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=134.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh---
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA--- 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~--- 152 (287)
.++++||+++|++.. .++|+|+||++.+||.+||+|++|||||||+++|+|.+. |++| +.++|.++.....
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 699999999998753 349999999999999999999999999999999999999 9999 9999987644321
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------ccC--Cc-----cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------PSF--DH-----GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------~~~--~~-----~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+....|...+ -|+.+|+.....-.. ..+ +. ...+.-...|||||+||++|
T Consensus 411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL 490 (573)
T COG4987 411 RETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL 490 (573)
T ss_pred HHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH
Confidence 2223334443332 688888887533100 000 00 01123456799999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++.+++|||| +++..+.+...+ .+||||++..+.. |++ |+++++|+..++..
T Consensus 491 ~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred cCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 8999999999 566677666653 5799999999988 766 99999999999865
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-25 Score=224.19 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=111.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH----HH-H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP----KE-A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~----~~-~ 150 (287)
||+++||+++|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++| |.++|... .. .
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~~i~~~~q~~ 73 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNWQLAWVNQET 73 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCCEEEEEecCC
Confidence 489999999998876 9999999999999999999999999999999999999 9999 77777421 00 0
Q ss_pred h--hhCCCCCCCChhHH---HHHH----H------HH-------h-cCCc---------eeeccCCccCCCCCCCceecc
Q 023106 151 H--ARRGAPWTFNPLLL---LNCL----K------NL-------R-NQGS---------VYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 151 ~--~~~~~~~~~~~~~~---~tv~----e------~l-------~-~~~~---------~~~~~~~~~~~~~~~~~LSgG 198 (287)
. ....+.++++.... ++.. + .+ . .... +....+.....++.+.+||||
T Consensus 74 ~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgG 153 (638)
T PRK10636 74 PALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGG 153 (638)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHH
Confidence 0 00001111111000 0100 0 00 0 0000 000111112346788999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHH
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPD 254 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~ 254 (287)
|||||+| .+|++||||| .+.+.|.++-..+|+||||++++.. +++ |+++ ..|+...
T Consensus 154 erqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 154 WRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999988 8999999999 3344444443345799999999876 433 5554 2565444
Q ss_pred H
Q 023106 255 V 255 (287)
Q Consensus 255 ~ 255 (287)
.
T Consensus 234 ~ 234 (638)
T PRK10636 234 F 234 (638)
T ss_pred H
Confidence 3
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-25 Score=217.70 Aligned_cols=175 Identities=20% Similarity=0.236 Sum_probs=131.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|++.. ..+|+|+||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 330 ~i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 499999999996521 138999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc--eeec----------------cCCccCC---CCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS--VYAP----------------SFDHGVG---DPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~--~~~~----------------~~~~~~~---~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+.+|++.+ .|+.+|+.++.. .... ....+.. ......||||||||++|
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 3446666666554 688999987632 1100 0111111 12245699999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|++++||| .+.+.|.++.+. .|+|||+...... +++ |++++.|+.+++.
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 8999999999 456666666433 5799999988766 554 7878888888874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-25 Score=220.81 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=114.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH-HH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP-KE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~-~~--- 149 (287)
|.||+++||++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| |.++|... ..
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~~~~~l~q 73 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDLIVARLQQ 73 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCCEEEEecc
Confidence 45899999999998765 9999999999999999999999999999999999999 9999 77776321 00
Q ss_pred HhhhCCCCCCCChh--------HHHHHH-------------HHHhcCC------------cee------eccCCccCCCC
Q 023106 150 AHARRGAPWTFNPL--------LLLNCL-------------KNLRNQG------------SVY------APSFDHGVGDP 190 (287)
Q Consensus 150 ~~~~~~~~~~~~~~--------~~~tv~-------------e~l~~~~------------~~~------~~~~~~~~~~~ 190 (287)
..........++.. ...+.+ +++.... ... ...+.. ..++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl-~~~~ 152 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL-DPDA 152 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC-CCCC
Confidence 00000011111110 000111 1111000 000 000111 1367
Q ss_pred CCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh
Q 023106 191 VEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI 247 (287)
Q Consensus 191 ~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i 247 (287)
.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++++.. +++ |+++
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 899999999999988 8999999999 3445555554445799999999876 444 6665
Q ss_pred c-CCCcHHH
Q 023106 248 S-TGKPPDV 255 (287)
Q Consensus 248 ~-~G~~~~~ 255 (287)
. .|+..+.
T Consensus 233 ~~~g~~~~~ 241 (635)
T PRK11147 233 SYPGNYDQY 241 (635)
T ss_pred EecCCHHHH
Confidence 3 5766553
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-25 Score=218.33 Aligned_cols=177 Identities=22% Similarity=0.302 Sum_probs=131.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ...+|+|+||++++|++++|+|+||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 337 ~i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999996421 1238999999999999999999999999999999999999 9999 89999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-----------------eccCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-----------------APSFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-----------------~~~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|++.+ .|+.+|+.++..-. ...+..+.. ......||||||||++|
T Consensus 413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 3346666666544 68899998753210 001111111 12356799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.+ ..|+|||+.+.... |++ |++++.|+.+++..
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 8999999999 45555666543 35799999988866 554 78888898877643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-25 Score=191.07 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=121.2
Q ss_pred EEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHh---
Q 023106 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAH--- 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~--- 151 (287)
|+++.|+.+.|.. ......+|+++|++|.+|+++-|+|.||||||||++.|+|.+. |++| |.++|.++....
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 3667777777643 2234559999999999999999999999999999999999999 9999 999999874321
Q ss_pred hhCCCCCCCChhHH-----HHHHHHHhcCCcee-eccCCc-------------------c---CCCCCCCceeccccceE
Q 023106 152 ARRGAPWTFNPLLL-----LNCLKNLRNQGSVY-APSFDH-------------------G---VGDPVEDDILVGLQHKV 203 (287)
Q Consensus 152 ~~~~~~~~~~~~~~-----~tv~e~l~~~~~~~-~~~~~~-------------------~---~~~~~~~~LSgGekqRv 203 (287)
+..-+.-+||++.. +|+.||+.+..... ...+.. + ..+..++-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 11124556776543 89999998743321 001110 0 12456788999999998
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhc
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
.+ ..|++|+||| .+++.-.+.. + ..+||||+|+.+.. |.+ |+++.
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 87 8999999999 1222222222 2 35799999999998 666 77764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-25 Score=222.70 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=132.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||++++|+.++|+|+||||||||+++|+|++. |++| |.++|.++... ..
T Consensus 455 ~i~~~~vsf~y~~~~--~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDS--PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-e----------------ccCCccC---CCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-A----------------PSFDHGV---GDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-~----------------~~~~~~~---~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|+..+ .|+.||+.++..-. . .....+. .......||||||||++|
T Consensus 530 r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred HHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 3345566665443 68999998753210 0 0000011 123456799999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.. ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 8999999999 45566666543 25799999998876 554 88889999888754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-25 Score=192.12 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=122.6
Q ss_pred EEEecCchhhhhh-----------------hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 77 VVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 77 ~i~~~~l~~~y~~-----------------~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+|.++||+|.|.- +..-..+++|+||+|++|+++|++|+|||||||++|+|+|++. |++|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSG 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCC
Confidence 5777788777731 1112448999999999999999999999999999999999999 9999
Q ss_pred -eeeCCCCHHHH---h-hhC--------CCCCCCChhHHHHHHHHHhcCCce-eec-------cCC-ccCCCCCCCceec
Q 023106 140 -SSFDSQDPKEA---H-ARR--------GAPWTFNPLLLLNCLKNLRNQGSV-YAP-------SFD-HGVGDPVEDDILV 197 (287)
Q Consensus 140 -i~~~g~~~~~~---~-~~~--------~~~~~~~~~~~~tv~e~l~~~~~~-~~~-------~~~-~~~~~~~~~~LSg 197 (287)
+.++|..+... + +.. +..+......-+.+.+.|.....- +.. ..+ ......++..||.
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSl 159 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSL 159 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccc
Confidence 89999875321 1 111 111111111113444433321110 000 000 1123567899999
Q ss_pred cccceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCC
Q 023106 198 GLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 198 GekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G 250 (287)
|||.|+.| ++|.+|+||| .+.+.+++... . +++.||+++.+.. |++ |+++.+|
T Consensus 160 GqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred hHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 99999866 9999999999 34444444433 2 4699999999988 555 9999999
Q ss_pred CcHHHHHHHH
Q 023106 251 KPPDVAKWRI 260 (287)
Q Consensus 251 ~~~~~~~~~~ 260 (287)
+..++...+.
T Consensus 240 ~l~~l~~~f~ 249 (325)
T COG4586 240 TLAQLQEQFG 249 (325)
T ss_pred cHHHHHHHhC
Confidence 9988876643
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-25 Score=213.53 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=113.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPKE--- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~~--- 149 (287)
.++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ + ++| +.++|.++..
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 45899999999998755 8999999999999999999999999999999999876 5 588 8898865311
Q ss_pred -HhhhCCCCCCCChhHH-----HHHHHHHhcCCc----eee--------------ccCCc-c-CCCCCCCceeccccceE
Q 023106 150 -AHARRGAPWTFNPLLL-----LNCLKNLRNQGS----VYA--------------PSFDH-G-VGDPVEDDILVGLQHKV 203 (287)
Q Consensus 150 -~~~~~~~~~~~~~~~~-----~tv~e~l~~~~~----~~~--------------~~~~~-~-~~~~~~~~LSgGekqRv 203 (287)
...+..+++.+|...+ .++.+++..... ... ..+.- . ..++.+.+|||||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 1122345566654322 233444332100 000 00111 1 34678899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ 240 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~ 240 (287)
+| .+|++||||| .+++.|.++.+ . +|++|||++++..
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 88 8999999999 45555555532 2 4799999998864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-25 Score=210.22 Aligned_cols=176 Identities=17% Similarity=0.219 Sum_probs=133.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.++++|+++.|++.+ +++.|+||++++|+.++|+|+||||||||+++|+|+++ |++| +.++|.+..+. ..
T Consensus 320 ei~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 320 EISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eeeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 366679999998752 28999999999999999999999999999999999999 9999 99999876442 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee-------------eccCCc--cCCCC----CCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------APSFDH--GVGDP----VEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~~~~~~--~~~~~----~~~~LSgGekqRv~I-----~ 206 (287)
++.+.++.|.+.+ -|+.||+.++..-. ...+-. +-.+. ....|||||+|||++ .
T Consensus 394 ~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 394 RKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred HhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 3445555555443 58889998764311 000000 11122 334599999999988 7
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
+++++|+|| .+.+.|.++.+. ++++||++..+.. +++ ||+++.|+.+++...
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 899999999 456666666654 5799999999988 555 899999999998543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-25 Score=218.24 Aligned_cols=176 Identities=14% Similarity=0.182 Sum_probs=129.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++|++++|++.. ..+|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 489999999996421 238999999999999999999999999999999999999 9999 89999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|.+.+ .|+.+|+.++..-.. . .+..+ ........||||||||++|
T Consensus 388 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 388 RSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred HhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 2334555555433 588999987632100 0 00000 1123456799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.|.++.. ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 468 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 8999999999 45556665543 24799999988766 544 78888998887753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-25 Score=197.31 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=111.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----Ccc-eeeCCCCHHHHhh-hCCCCCCCChhH-----
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKA-SSFDSQDPKEAHA-RRGAPWTFNPLL----- 164 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p----~~G-i~~~g~~~~~~~~-~~~~~~~~~~~~----- 164 (287)
+|+|+||+|++|++++|+||||||||||+++|+|+++ | ++| +.++|.++..... ...+.+.+|...
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999999999999999999999999998 8 899 8899987643211 223445554431
Q ss_pred HHHHHHHHhcCCcee-e-------------cc--CCc--cCCCCCCCceeccccceEEE-----ecCCEEeEec------
Q 023106 165 LLNCLKNLRNQGSVY-A-------------PS--FDH--GVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG------ 215 (287)
Q Consensus 165 ~~tv~e~l~~~~~~~-~-------------~~--~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE------ 215 (287)
.+++.+++.+..... . .. ... ...++.+..|||||+|||+| .+|+++||||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 145555553321100 0 00 110 12356788999999999998 8999999999
Q ss_pred -----chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 216 -----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 216 -----~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+++.|.++.+ .+|++||+++++.. |++ |++++.|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 34555655542 24699999998865 444 7777788877764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-25 Score=202.05 Aligned_cols=183 Identities=19% Similarity=0.256 Sum_probs=132.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-- 149 (287)
+++|+++||+..|........++++|||+|.+||.+||+|.+|||||-..+.|+++++.. ..-+| +.++|.++-.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 568999999999974444456999999999999999999999999999999999999842 11256 8999987522
Q ss_pred ---HhhhCC--CCCCCChhH-----HHHHHHHH----hcCCceeec---------------cCCccCCCCCCCceecccc
Q 023106 150 ---AHARRG--APWTFNPLL-----LLNCLKNL----RNQGSVYAP---------------SFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 150 ---~~~~~~--~~~~~~~~~-----~~tv~e~l----~~~~~~~~~---------------~~~~~~~~~~~~~LSgGek 200 (287)
.+.-+| +.+.||.+. +.++-..+ .....+... .-.....+.+|++|||||+
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 222333 666777542 23333333 332221100 0011234679999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
|||.| .+|++||.|| ++++.|+++... .+|||||+..+.+ |++ |++++.|..+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 99988 8999999999 456666655443 4699999999987 655 8999999988
Q ss_pred HHHH
Q 023106 254 DVAK 257 (287)
Q Consensus 254 ~~~~ 257 (287)
++..
T Consensus 244 ~lF~ 247 (534)
T COG4172 244 TLFA 247 (534)
T ss_pred HHhh
Confidence 7743
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-25 Score=218.14 Aligned_cols=170 Identities=19% Similarity=0.247 Sum_probs=121.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
.++|+++|+++ . +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 266 ~~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA 333 (510)
T ss_pred CceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence 34799999983 2 6899999999999999999999999999999999999 9999 8888875421
Q ss_pred HhhhCCCCCCCChh------HHHHHHHHHhcCC----cee-------------eccCCc--cCCCCCCCceeccccceEE
Q 023106 150 AHARRGAPWTFNPL------LLLNCLKNLRNQG----SVY-------------APSFDH--GVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 150 ~~~~~~~~~~~~~~------~~~tv~e~l~~~~----~~~-------------~~~~~~--~~~~~~~~~LSgGekqRv~ 204 (287)
...+.++.+.+|.. ..+++.+|+.... ... ...+.- ...++.+.+|||||||||+
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence 11233455555532 1146677764210 000 001111 2346788999999999998
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+++..|+++++.
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 8 8999999999 45555555433 24799999999986 443 7777777766543
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-25 Score=200.44 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=106.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNL 172 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l 172 (287)
..+|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|... ...+.. ... ..+++.+|+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~~---~~~~~~-~~~---~~~tv~enl 106 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGEVS---VIAISA-GLS---GQLTGIENI 106 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEe---EEeccc-CCC---CCCcHHHHH
Confidence 448999999999999999999999999999999999999 9999 88888521 000010 011 113455555
Q ss_pred hcCCceee---c-----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHH
Q 023106 173 RNQGSVYA---P-----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDV 221 (287)
Q Consensus 173 ~~~~~~~~---~-----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l 221 (287)
.+...... . .+. ....++.+.+||+||+|||+| .+|++||||| .+++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L 186 (264)
T PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186 (264)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 43210000 0 000 122356788999999999988 8999999999 344455
Q ss_pred HhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 222 SSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 222 ~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
.++.. ..|++|||++++.. +++ |+++..|+.+++...
T Consensus 187 ~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 187 YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 44432 24699999998875 443 777778887776543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-25 Score=216.45 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=127.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++|++++|++.. ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 316 ~i~~~~v~~~y~~~~--~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGK--KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 599999999996421 128999999999999999999999999999999999999 9999 89999876431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-eeec----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VYAP----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~~~----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+.+|.+.+ .|+.+|+.++.. .... .+..+ ........||||||||++|
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 3345555555433 588899875432 1000 01001 1123467899999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhcc-C--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMF-D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~-~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.+.++. . ..+++||+++.... +++ |++++.|+.+++.
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 8999999999 4556666653 2 35799999987654 444 7888888877663
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-25 Score=212.77 Aligned_cols=168 Identities=14% Similarity=0.200 Sum_probs=116.2
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
++|+++||++.| .. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 249 ~~i~~~~l~~~~--~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLR--QP----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCccccc--Cc----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence 479999999974 23 8999999999999999999999999999999999999 9999 8899865421 1
Q ss_pred hhhCCCCCCCChhH------HHH-----HHHHHhcCCce----ee-----------c--cCCccCCCCCCCceeccccce
Q 023106 151 HARRGAPWTFNPLL------LLN-----CLKNLRNQGSV----YA-----------P--SFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 151 ~~~~~~~~~~~~~~------~~t-----v~e~l~~~~~~----~~-----------~--~~~~~~~~~~~~~LSgGekqR 202 (287)
..+.++++.+|... .++ +++++...... .. . .+.....++.+.+||||||||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 22334444444321 022 23333321110 00 0 111123477899999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
|+| .+|++||||| .+++.+.++.+ .+|++|||++++.. |++ |+++..+++
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 988 8999999999 45555555433 24699999999976 333 555544433
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-24 Score=221.39 Aligned_cols=175 Identities=19% Similarity=0.252 Sum_probs=135.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||++.|+.++ .+.+|+|+||+|++|+-+|||||+||||||.+.+|...+. |++| +.+||.+++.. ..
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 399999999998775 5669999999999999999999999999999999999999 9999 99999986542 33
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec----------------------cCCccCCCCCCCceeccccceEEE---
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------------SFDHGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------------~~~~~~~~~~~~~LSgGekqRv~I--- 205 (287)
+..++.+-|.+.+ .|+.|||.++..- .+ .|+... -....+||||||||++|
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~v-GerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRV-GERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCcc-CcccCcCCchHHHHHHHHHH
Confidence 4445556665554 6999999998221 11 011111 23456899999999999
Q ss_pred --ecCCEEeEec-------chHHHHHhccC----C--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-------GVWKDVSSMFD----E--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-------~~~~~l~~~~~----~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| +.-+.+++.+| . +|+|.|-+..+.. .++ |+++++|+-++++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999 22233333333 2 6899999999988 333 89999999999875
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-24 Score=210.81 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=117.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. .++|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 320 ~i~~~~v~f~y~~~~--~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR--APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCC--cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 599999999997531 138999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c----------------cCCccC---CCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P----------------SFDHGV---GDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~----------------~~~~~~---~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|...+ .|+.||+.++..... . .+..+. .......||||||||++|
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 3345555555443 689999987532100 0 000001 112456799999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+.+.+.++.. .+|+|||+++.+.
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 8999999999 45556666533 2579999998764
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-24 Score=179.59 Aligned_cols=175 Identities=18% Similarity=0.273 Sum_probs=120.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC---CCHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS---QDPK-- 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g---~~~~-- 148 (287)
.|.+++.+++|.|+... -.+||||++.+||++||+|.+|||||||+++|++.+. |+.| +.+.. +...
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 35799999999999887 7899999999999999999999999999999999999 9999 65532 2211
Q ss_pred ---HH--h--hhCCCCCCCChhHH-----HHHHHHHh-----cCCcee------------eccCCccCCCCCCCceeccc
Q 023106 149 ---EA--H--ARRGAPWTFNPLLL-----LNCLKNLR-----NQGSVY------------APSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 149 ---~~--~--~~~~~~~~~~~~~~-----~tv~e~l~-----~~~~~~------------~~~~~~~~~~~~~~~LSgGe 199 (287)
+. + .+...+++.|.+.- .+.-.|+. .+.+-+ .-..+....+..|.++||||
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM 156 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence 11 1 12224444444321 11111111 011100 01112223456789999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
+||+.| ..|.++++|| .+++.++.+..+ .++||||+..+.. |.+ |++++.|-+
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 999988 7899999999 455555555432 5799999998865 443 788888877
Q ss_pred HHHH
Q 023106 253 PDVA 256 (287)
Q Consensus 253 ~~~~ 256 (287)
+.+.
T Consensus 237 DrvL 240 (258)
T COG4107 237 DRVL 240 (258)
T ss_pred cccc
Confidence 7664
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-25 Score=190.06 Aligned_cols=151 Identities=11% Similarity=0.056 Sum_probs=105.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-eCCCCHHHHhhhCCCCCCCChhHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-FDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +. ++|.... +.........+++.+|+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~~-------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDALP-------LGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCceec-------cccccccCCcCcHHHHHH
Confidence 7899999999999999999999999999999999999 9999 75 6665331 111111111246667765
Q ss_pred cCCceeecc-----------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhc-
Q 023106 174 NQGSVYAPS-----------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSM- 224 (287)
Q Consensus 174 ~~~~~~~~~-----------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~- 224 (287)
+....+... .. ....++.+..||+|||||++| .+|+++|||| .+++.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~ 151 (213)
T PRK15177 72 MMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL 151 (213)
T ss_pred HHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh
Confidence 532211000 00 012356788999999999988 8999999999 233334322
Q ss_pred cC-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 225 FD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 225 ~~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+ ..+++|||++.+.. +++ |++++.|+..+..
T Consensus 152 ~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 152 QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 22 35799999999875 444 7777888777663
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-24 Score=216.81 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=124.8
Q ss_pred EecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--cc-eeeCCCCHHHHhhhCC
Q 023106 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 79 ~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~--~G-i~~~g~~~~~~~~~~~ 155 (287)
.++|+++.|+++. +|+|+|+++++|+++||+||||||||||+++|+|.++ |+ +| +.++|+++.... ...
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~-~~~ 141 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQI-LKR 141 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhh-ccc
Confidence 3678899998766 9999999999999999999999999999999999988 75 78 999998653322 223
Q ss_pred CCCCCChhHH---HHHHHHHhcCCceeecc-CC------------------c----cCCCCCCCceeccccceEEE----
Q 023106 156 APWTFNPLLL---LNCLKNLRNQGSVYAPS-FD------------------H----GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 156 ~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~~------------------~----~~~~~~~~~LSgGekqRv~I---- 205 (287)
+.+++|...+ +|+.|++.+......+. .. . ...++.+..|||||||||.|
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL 221 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 221 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHH
Confidence 5555554332 68889887643221110 00 0 01134567899999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHH-HHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~-~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++|+||| .+++.|+++.+ .+|+++|+++. +.+ +++ |+++..|+++++..
T Consensus 222 ~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 222 LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 8999999999 45566665543 24699999873 443 444 78888998887754
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-24 Score=180.05 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=127.9
Q ss_pred ccEEEecCchhhhhhhh-----hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~-----~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
|+.++++|++|.|.... +...+++.|||++++|+.+||||.||||||||.|+|+|+++ |++| +.++|+...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 45799999999985432 12448899999999999999999999999999999999999 9999 999998764
Q ss_pred HH---hhhCCCCCCCChhHH-----HHHHHHHhcCCceeec-----------------cCCccCCCCCCCceeccccceE
Q 023106 149 EA---HARRGAPWTFNPLLL-----LNCLKNLRNQGSVYAP-----------------SFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 149 ~~---~~~~~~~~~~~~~~~-----~tv~e~l~~~~~~~~~-----------------~~~~~~~~~~~~~LSgGekqRv 203 (287)
.. ++...+-+.||+++- +.+-.-+..+..+... ..-.+..+-++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 32 222334455555431 2222222222111100 0111234568899999999999
Q ss_pred EE-----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 204 VI-----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 204 ~I-----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
++ .+|.++|.|| .+++.+.++.+. -|+|+.++..+.. .++ |.+++.|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 88 8999999999 445555555443 3699999999877 444 8899999998875
Q ss_pred H
Q 023106 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 239 a 239 (267)
T COG4167 239 A 239 (267)
T ss_pred c
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-24 Score=206.43 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=104.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
|.+|.++|+++.|+++. +|+++||+|.+|++|||||+||||||||||+|+|.+. |++| |...+. ....+..
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~-~~v~~l~ 72 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG-LRVGYLS 72 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC-ceEEEeC
Confidence 56899999999999887 9999999999999999999999999999999999999 9999 665542 1111111
Q ss_pred CCCCCCCChhHHHHHHHHHhcC-------------------------------------C-----c----eeeccCCccC
Q 023106 154 RGAPWTFNPLLLLNCLKNLRNQ-------------------------------------G-----S----VYAPSFDHGV 187 (287)
Q Consensus 154 ~~~~~~~~~~~~~tv~e~l~~~-------------------------------------~-----~----~~~~~~~~~~ 187 (287)
+..+.... .++++.+..+ . . +..-.+. .
T Consensus 73 Q~~~~~~~----~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~--~ 146 (530)
T COG0488 73 QEPPLDPE----KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP--D 146 (530)
T ss_pred CCCCcCCC----ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC--c
Confidence 11111100 0111111000 0 0 0000111 1
Q ss_pred CCCCCCceeccccceEEE-----ecCCEEeEec-------chHHH----HHhccCCeEEEEcChHHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------GVWKD----VSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~~~~~----l~~~~~~~i~vtHd~~~~~~ 240 (287)
.++.+.+||||||.||+| .+|++||||| +.+.- |.++...+|+||||++++..
T Consensus 147 ~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 147 EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 167899999999999988 8999999999 23333 33333346899999999976
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-24 Score=182.23 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=90.2
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCC
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWT 159 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~ 159 (287)
.||+|.|++.. +++++ |++++|++++|+||||||||||+++|+|+++ |++| +.++|..+ .+.
T Consensus 4 ~~l~~~~~~~~----~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i---------~~~ 66 (177)
T cd03222 4 PDCVKRYGVFF----LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITP---------VYK 66 (177)
T ss_pred CCeEEEECCEE----EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEE---------EEE
Confidence 58899998765 78884 9999999999999999999999999999999 9999 88887431 112
Q ss_pred CChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHh
Q 023106 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSS 223 (287)
Q Consensus 160 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~ 223 (287)
+|.. .||+||+||++| .+|++++||| .+.+.+.+
T Consensus 67 ~q~~------------------------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 67 PQYI------------------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred cccC------------------------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 2110 099999999988 8999999999 34455555
Q ss_pred ccC----CeEEEEcChHHHHH
Q 023106 224 MFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 224 ~~~----~~i~vtHd~~~~~~ 240 (287)
+.. .++++|||++++..
T Consensus 117 ~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 117 LSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHcCCCEEEEEECCHHHHHH
Confidence 432 24799999999875
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-24 Score=175.11 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=118.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh-hC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA-RR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~-~~ 154 (287)
++.++||+.+.++.. .|.++||+|.+|||+-|+||+|||||||+..+.|.+...+..+| +.++++.+..... ++
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 588999999888877 89999999999999999999999999999999999985455578 8889887654332 22
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeeccCC--------------ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD--------------HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~--------------~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.++..||+..+ ++|.+|+.+........-. .+..++.|.+||||||.||++ .+|++++
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceee
Confidence 35556666543 7888998875432211000 123367899999999999988 8999999
Q ss_pred Eecch---------------HHHHHhccCCeEEEEcChHHHHH
Q 023106 213 LDGGV---------------WKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 213 lDE~~---------------~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
|||++ +..++..---+++||||...+..
T Consensus 158 LDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa 200 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA 200 (213)
T ss_pred eCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC
Confidence 99922 22222222225799999988764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-24 Score=194.47 Aligned_cols=163 Identities=10% Similarity=0.169 Sum_probs=111.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.+.|+++|+++. +.. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++| +.++|.
T Consensus 37 ~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g~-------- 99 (282)
T cd03291 37 DNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSGR-------- 99 (282)
T ss_pred CCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCE--------
Confidence 347999999985 333 8999999999999999999999999999999999999 9999 888772
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-------c--cCC----------ccCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-------P--SFD----------HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------~--~~~----------~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.+.+|...+ .++.+|+.+...... . ... .......+..||+||+||++| .+
T Consensus 100 --i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 100 --ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred --EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 1111221110 255666554321100 0 000 001123467899999999988 89
Q ss_pred CCEEeEec-----------chHHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
|+++|||| .+++.+ ..+.. .++++|||++.+.. +++ |+++..|++.++.
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999 233332 22222 24699999998754 433 6777788877764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-24 Score=232.33 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=133.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|.+.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++| |.+||.++... ..
T Consensus 1237 ~I~f~nVsf~Y~~~~--~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPEL--PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCC--CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 599999999996431 138999999999999999999999999999999999999 9999 99999876431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+..++|++.+ -|+.+||..+..... .....+.. ......||||||||++| .
T Consensus 1312 R~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred HhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 3445556665543 588899876532100 00000111 12345799999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.+.. +|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999 455666666543 4799999999988 666 89999999999864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-24 Score=231.95 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=132.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. .++|+|+||+|++|+.+||+|++|||||||+++|.|+++ |++| |.+||.++... ..
T Consensus 1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 599999999995421 138999999999999999999999999999999999999 9999 99999886432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee----------------ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+..++|++.+ -|+.+||..+..... .....+.. ......||||||||++| .
T Consensus 1309 R~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred HhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 3345555665443 588888876432100 00000111 22345799999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.++. +|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999 455566666543 5799999999988 665 89999999999864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-24 Score=226.74 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=118.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee-CCCCHHH---Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF-DSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~-~g~~~~~---~~ 151 (287)
.|+++||++.|+... ...+|+|+||+|++|+++||+||||||||||+++|+|++. |++| |.+ +|.++.. ..
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 599999999997532 1238999999999999999999999999999999999999 9999 888 4566532 12
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCcee----------e---------------------------------------
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVY----------A--------------------------------------- 180 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~----------~--------------------------------------- 180 (287)
.+..+++++|.+.+ .|+.+|+.++.... .
T Consensus 458 lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 23445666665443 59999998863100 0
Q ss_pred ----ccC---------------------Ccc---CCCCCCCceeccccceEEE-----ecCCEEeEec-----------c
Q 023106 181 ----PSF---------------------DHG---VGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------G 216 (287)
Q Consensus 181 ----~~~---------------------~~~---~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~ 216 (287)
... ..+ ........|||||||||+| .+|++||||| .
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 000 000 0124567899999999998 9999999999 4
Q ss_pred hHHHHHhccC----CeEEEEcChHHHHH
Q 023106 217 VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+.+.|.++.. .+|+|||+++.+..
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 5566666542 35799999998854
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-24 Score=211.76 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=109.8
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++|+++|+++.|++. .|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.++ .
T Consensus 338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-~-------- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-L-------- 400 (590)
T ss_pred ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-e--------
Confidence 3579999999999763 5899999999999999999999999999999999999 9999 6654 1
Q ss_pred CCCCCCCChh---HHHHHHHHHhcCCceee---------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA---------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
.+.+.+|.. ...++.+++.+...... ..+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 401 -~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE 479 (590)
T PRK13409 401 -KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479 (590)
T ss_pred -eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 122222221 12577777765311100 0011 123467899999999999988 8999999999
Q ss_pred -----------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 -----------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -----------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+++.|+++.+ .+++||||++++..
T Consensus 480 Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 480 PSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45666666533 24799999999876
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-24 Score=218.13 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=110.8
Q ss_pred ccEEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh
Q 023106 75 IPVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~ 152 (287)
.++|+++||++.|++ .. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++| +.+++..
T Consensus 506 ~~~L~~~~ls~~y~~~~~----il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~~------ 572 (718)
T PLN03073 506 PPIISFSDASFGYPGGPL----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAKV------ 572 (718)
T ss_pred CceEEEEeeEEEeCCCCe----eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCce------
Confidence 358999999999964 33 8999999999999999999999999999999999999 9999 7665421
Q ss_pred hCCCCCCCChh-HHHHHHHH----H-h-cCCc--------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 153 RRGAPWTFNPL-LLLNCLKN----L-R-NQGS--------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 153 ~~~~~~~~~~~-~~~tv~e~----l-~-~~~~--------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.+++.+|.. ..+++.++ + . +... +....+.....++.+..|||||||||+| .+|++||
T Consensus 573 --~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 573 --RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred --eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111111 00000011 0 0 0000 0001111123457889999999999988 8999999
Q ss_pred Eec-----------chHHHHHhccCCeEEEEcChHHHHH---HHH----HHHh-cCCCcHHH
Q 023106 213 LDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~ 255 (287)
||| .+++.+.+.-..+|+||||++++.. |++ |+++ ..|+..+.
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999 3344444432335799999999876 333 5655 45655543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-24 Score=226.69 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=132.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--------------------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-------------------- 136 (287)
-|+++||+++|++.. ..++|+|+||+|++|+++||+||||||||||+++|+|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999997432 1238999999999999999999999999999999999998 6
Q ss_pred ----------------------------------Ccc-eeeCCCCHHHH---hhhCCCCCCCChhHH--HHHHHHHhcCC
Q 023106 137 ----------------------------------QKA-SSFDSQDPKEA---HARRGAPWTFNPLLL--LNCLKNLRNQG 176 (287)
Q Consensus 137 ----------------------------------~~G-i~~~g~~~~~~---~~~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (287)
++| |.++|.++... ..+..+.+++|.+.+ .|+.|||.++.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 589 99999987542 234456777777654 79999999974
Q ss_pred cee-------------ec----cCCccCC---CCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 177 SVY-------------AP----SFDHGVG---DPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 177 ~~~-------------~~----~~~~~~~---~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
.-. .. .+..+.. ......||||||||++| .+|++||||| .+.+.
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 210 00 0001111 12455799999999999 8999999999 45555
Q ss_pred HHhcc---C-CeEEEEcChHHHHH--HHH--------HHHh-cCCCcHHHHH
Q 023106 221 VSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 257 (287)
Q Consensus 221 l~~~~---~-~~i~vtHd~~~~~~--rvi--------gr~i-~~G~~~~~~~ 257 (287)
|.++. + .+|+|+|.+..+.. +++ |+++ +.|+.+++..
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 66653 2 35799999999877 443 3545 6899888864
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-24 Score=198.47 Aligned_cols=176 Identities=21% Similarity=0.256 Sum_probs=130.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||++.|+... ++|+||||++.+|+.+||+||+|+||||++|+|..... ..+| |.+||++++.. ..
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 599999999997643 49999999999999999999999999999999999999 8999 99999997543 23
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..++.++|+..+ .|++.||+++..-.. ..|..+ ..-...-.|||||||||+|
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 3445555555433 567777776532110 011111 1122345699999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH-H-HH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ-R-VL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~-r-vi----gr~i~~G~~~~~~~~ 258 (287)
.+|.+++||| .+...+.+++.. .|+|.|-+..+.. . ++ |+++++|+-++++..
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 8999999999 233344455443 6899999998877 2 22 899999999998754
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-24 Score=184.96 Aligned_cols=150 Identities=21% Similarity=0.321 Sum_probs=107.2
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH-----HHHHHHHhcC
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL-----LNCLKNLRNQ 175 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~-----~tv~e~l~~~ 175 (287)
|+|++|+++||+|+||||||||+++|+|+++ |++| +.++|.++... +..+.+.+|...+ .++.+|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKG--WRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHh--hCcEEEecccccccCCCCccHHHHHHhc
Confidence 5788999999999999999999999999999 9999 99999876432 2334454544321 5777887654
Q ss_pred Ccee-----ecc-------------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHH
Q 023106 176 GSVY-----APS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 176 ~~~~-----~~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~ 220 (287)
.... ... +. ....++.+.+||+||+||++| .+|+++|+|| .+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~ 155 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2100 000 00 012356788999999999988 8999999999 45555
Q ss_pred HHhccC---CeEEEEcChHHHHH---HHH---HHHhcCCCcHHHH
Q 023106 221 VSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 221 l~~~~~---~~i~vtHd~~~~~~---rvi---gr~i~~G~~~~~~ 256 (287)
|.++.+ ..|++|||++++.. +++ |+++..|+++++.
T Consensus 156 l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 156 FIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhc
Confidence 555543 24799999998875 333 6777778777664
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=226.74 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=131.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||+++|.+.. ..+|+||||+|++|+.|||+|++|||||||+++|.|+++ |++| |.+||.++.. ...
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999996531 238999999999999999999999999999999999999 9999 9999987643 223
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee------------ec----cCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY------------AP----SFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~------------~~----~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+++|++.+ -|+.+||....... .. ....+.. ......||||||||++| .
T Consensus 1383 R~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred HhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 3445666666544 58889986532110 00 0000111 12345799999999998 5
Q ss_pred c-CCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 D-GNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~-p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+ |++||||| .+.+.|.+.++. +|+|+|.++.+.. +++ |++++.|+++++..
T Consensus 1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 89999999 345556665543 4799999999988 665 89999999999864
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-24 Score=215.36 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=127.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
+|+++|+++.|++......+|+++||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. .
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHHH
Confidence 79999999999642111238999999999999999999999999999999999999 9999 8999976432 1
Q ss_pred --hhhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 151 --HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
..++.+.+.+|...+ .++.+|+.+...... . .+. ....++.+.+||+||+||+.|
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~ 160 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 123445555554432 467777764211100 0 000 112367889999999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|+++|||| .+.+.+.++.+ ..+++||+++.+.. |++ |++++.|++++..
T Consensus 161 ~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 8999999999 44555555432 24699999998754 433 7777888877653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-23 Score=226.38 Aligned_cols=176 Identities=20% Similarity=0.206 Sum_probs=132.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||+|++|+.+||+|++|||||||+++|.++++ |++| |.+||.++... ..
T Consensus 1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 599999999996532 138999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee------------e----ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY------------A----PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~------------~----~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+..++|++.+ -|+.+||....... . .....+.. ......||||||||++| .
T Consensus 1359 R~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred HhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 3345555665543 58888886321110 0 00001111 12345699999999998 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.+.. +|+|+|.++.+.. |++ |++++.|+++++..
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999 455566666543 4799999999988 666 89999999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=173.71 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=94.3
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hhhCC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HARRG 155 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~~~~ 155 (287)
++++++.|.+.. +++++||++.+|++++|+|+||||||||+++|+|+++ |++| +.++|.++... .....
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence 578888887654 8999999999999999999999999999999999999 9999 88888654211 01111
Q ss_pred CCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 156 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
+.+.+| ||+||+||+.| .+|++++||| .+.+
T Consensus 75 i~~~~q---------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~ 121 (157)
T cd00267 75 IGYVPQ---------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE 121 (157)
T ss_pred eEEEee---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 222222 99999999988 8999999999 3445
Q ss_pred HHHhccC---CeEEEEcChHHHHH
Q 023106 220 DVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 220 ~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+.++.. ..+++||+++++..
T Consensus 122 ~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 122 LLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5554433 24699999998864
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-23 Score=185.33 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=91.1
Q ss_pred ccccccccc-----CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChh---HHH
Q 023106 96 PTSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPL---LLL 166 (287)
Q Consensus 96 ~l~~vsl~i-----~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~---~~~ 166 (287)
.+.+++|++ .+|+++||+||||||||||+++|+|+++ |++| +.++|..+ .+.+|.. ...
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~~i---------~~~~q~~~~~~~~ 76 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELDTV---------SYKPQYIKADYEG 76 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCceE---------EEecccccCCCCC
Confidence 445555555 5899999999999999999999999999 9999 88888522 1111111 114
Q ss_pred HHHHHHhcCCcee----------eccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 167 NCLKNLRNQGSVY----------APSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 167 tv~e~l~~~~~~~----------~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
++.+++....... ...+. ....++.+.+|||||+|||+| .+|+++|||| .+++
T Consensus 77 tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 77 TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred CHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 5556554321100 00010 112357889999999999988 8999999999 4455
Q ss_pred HHHhccC----CeEEEEcChHHHHH
Q 023106 220 DVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 220 ~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.|.++.. .+|++|||++++..
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 5555532 25799999998875
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-23 Score=173.46 Aligned_cols=132 Identities=19% Similarity=0.230 Sum_probs=102.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh--h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA--R 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~--~ 153 (287)
+++++||+..-+... ++.++||++.+||++-|.||||||||||+|+|+|++. |++| |.+.|..+...+. .
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 478899998888776 9999999999999999999999999999999999999 9999 8998876533221 1
Q ss_pred CCCCC---CCChhHHHHHHHHHhcCCceeeccCC------------ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 154 RGAPW---TFNPLLLLNCLKNLRNQGSVYAPSFD------------HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 154 ~~~~~---~~~~~~~~tv~e~l~~~~~~~~~~~~------------~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
+.+-+ ..-....+|++||+.|...+....-. .+..+.++.+||-|||+||+| ..+++.||
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 11111 11122338999999986554432000 134578899999999999998 77899999
Q ss_pred ec
Q 023106 214 DG 215 (287)
Q Consensus 214 DE 215 (287)
||
T Consensus 155 DE 156 (209)
T COG4133 155 DE 156 (209)
T ss_pred cC
Confidence 99
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-23 Score=182.91 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=101.4
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-----------eCCCCHH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-----------FDSQDPK 148 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-----------~~g~~~~ 148 (287)
.+|+++|++.. .+|+|+|+ +.+|++++|+||||||||||+++|+|+++ |++| +. ++|.++.
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 37899997542 28999995 99999999999999999999999999999 9999 64 6777654
Q ss_pred HHh---h--hCCCCCCCChhHH--HHHHHHHhcCCcee---------eccCC-ccCCCCCCCceeccccceEEE-----e
Q 023106 149 EAH---A--RRGAPWTFNPLLL--LNCLKNLRNQGSVY---------APSFD-HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 149 ~~~---~--~~~~~~~~~~~~~--~tv~e~l~~~~~~~---------~~~~~-~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
... . ...+.+.++.... .++.+++....... ...+. ....++.+..||+||+||+.| .
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 321 1 1112222221110 12223332211000 00011 112356788999999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|+++|+|| .+.+.+.++.+ ..|++|||++.+..
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~ 204 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDY 204 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 999999999 34455555433 24799999998875
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-23 Score=224.88 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=124.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
+++++||++.|+.+.....+|+|||+++++|+++||+||||||||||+++|+|+++...+++| +.++|.++... .++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~-~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQRS 837 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChh-hhcc
Confidence 589999999985322223499999999999999999999999999999999999751124678 89999876322 2333
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceeecc-CC-----------------ccCCCCCCC----ceeccccceEEE-----
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYAPS-FD-----------------HGVGDPVED----DILVGLQHKVVI----- 205 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~~~-~~-----------------~~~~~~~~~----~LSgGekqRv~I----- 205 (287)
+++++|... .+|+.|++.+...+..+. .. ....++.++ .|||||||||.|
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 555555432 278999998753322110 00 012244444 799999999988
Q ss_pred ecCC-EEeEec-----------chHHHHHhccCC---eEEEEcChHHHH-H---HHH----H-HHhcCCCcHH
Q 023106 206 VDGN-YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAM-Q---RVL----K-RHISTGKPPD 254 (287)
Q Consensus 206 ~~p~-lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~-~---rvi----g-r~i~~G~~~~ 254 (287)
.+|+ +|+||| .+++.|+++.+. +|+++|+++... . +++ | ++++.|++.+
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 8996 999999 456666665432 469999998642 2 444 5 8888888743
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-23 Score=203.35 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=111.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||+++|++.. .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 599999999996422 28999999999999999999999999999999999999 9999 8999986532 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCC--c----eeeccCCcc--CCCC--CCCceeccccceEEE-----ecCCEEeEec
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQG--S----VYAPSFDHG--VGDP--VEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~--~----~~~~~~~~~--~~~~--~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
+..+.+.+|+..+ .++.+|-.... . +........ ..+. ....||||||||++| .+|+++||||
T Consensus 396 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE 475 (547)
T PRK10522 396 RKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475 (547)
T ss_pred hhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 3345555555433 23333300000 0 000000000 0011 135799999999998 8999999999
Q ss_pred -----------chHHHHHhcc---C-CeEEEEcChHHHHH--HHH----HHHhc
Q 023106 216 -----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIS 248 (287)
Q Consensus 216 -----------~~~~~l~~~~---~-~~i~vtHd~~~~~~--rvi----gr~i~ 248 (287)
.+.+.+.+.. + .+|+|||+.+.... +++ |++++
T Consensus 476 ~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 3344444332 2 35799999977655 443 55555
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-22 Score=187.77 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=131.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|.++++++.=.+. ..++++++||++.+|+.+|||||||||||||.|+|.|..+ |.+| +.+||.++... ..
T Consensus 334 ~L~Ve~l~~~PPg~--~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPGQ--KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCCC--CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 69999998754332 3458999999999999999999999999999999999999 9999 99999887543 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCc-ee-------------------e-ccCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGS-VY-------------------A-PSFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~-~~-------------------~-~~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
-+.++|.+|+-.+ -|+.|||.-... .. . ..|+.... .--..||||||||+.+
T Consensus 409 G~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG-~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 409 GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQRQRIALARAL 487 (580)
T ss_pred ccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccC-CCCCCCCchHHHHHHHHHHH
Confidence 3346777776554 588899875431 10 0 01221111 2345799999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~~ 259 (287)
.+|.+++||| .+.+.|.+.... +|+|+|-...+.. +++ |++-..|+.+++...-
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 8999999999 234444444332 4799999998877 554 8888899999987653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-22 Score=203.18 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=110.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC-----HH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD-----PK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~-----~~ 148 (287)
+.+|+++|+++.|++.. +|+|+||+|.+|+++||||+||||||||+++|+|......|.+| +.+.++. ..
T Consensus 175 ~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 175 IKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred ceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 44799999999998766 99999999999999999999999999999999986410127777 6543332 10
Q ss_pred H--H----------hhhCCCCCCCCh----------------------hH----HHHHHHHHhcCCc----------eee
Q 023106 149 E--A----------HARRGAPWTFNP----------------------LL----LLNCLKNLRNQGS----------VYA 180 (287)
Q Consensus 149 ~--~----------~~~~~~~~~~~~----------------------~~----~~tv~e~l~~~~~----------~~~ 180 (287)
. . .....+.+.++. .. +..+++.+..... +..
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0 0 000000000000 00 0111111111000 001
Q ss_pred ccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH---H
Q 023106 181 PSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ---R 241 (287)
Q Consensus 181 ~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~---r 241 (287)
..+.....++.+.+|||||||||+| .+|++||||| .+.+.|.++...+|+||||++++.. +
T Consensus 331 lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 331 LSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred CCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 1111123467789999999999988 8999999999 4455555553346799999999876 4
Q ss_pred HH----HHHh-cCCCcHH
Q 023106 242 VL----KRHI-STGKPPD 254 (287)
Q Consensus 242 vi----gr~i-~~G~~~~ 254 (287)
++ |++. ..|+..+
T Consensus 411 i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 411 ILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEEECCEEEEeCCCHHH
Confidence 43 5654 4565543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-22 Score=202.43 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=104.0
Q ss_pred cEEEecCchhhhhh-hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~~~l~~~y~~-~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.+|+++||++.|++ .. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.+++..
T Consensus 450 ~~i~~~nv~~~~~~~~~----il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~~~------- 515 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV----LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPAKG------- 515 (659)
T ss_pred CeEEEEeeEEECCCCCe----eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecCCC-------
Confidence 36999999999953 33 8999999999999999999999999999999999998 9999 6665421
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee---ccCC--------------c--------cCCCCCCCceeccccceEEE-
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA---PSFD--------------H--------GVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~---~~~~--------------~--------~~~~~~~~~LSgGekqRv~I- 205 (287)
.+.+.+|...+ .++.+|+.++..... +... . +........||||||||++|
T Consensus 516 -~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 516 -KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred -cEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 12233332211 366677765421100 0000 0 00011347899999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
.+|+++|||| .+.+.+.+.-...|++||+++.+.
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK 643 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH
Confidence 8999999999 344445443223579999999764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-22 Score=196.95 Aligned_cols=160 Identities=17% Similarity=0.104 Sum_probs=107.0
Q ss_pred EEEecCchhhhhhhhh-ccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hh
Q 023106 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~-~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~ 151 (287)
.|+++||+++|++... ...+|+|+||++++|++++|+||||||||||+++|+|+++ |++| +.++|.++.. ..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 5999999999975311 1238999999999999999999999999999999999999 9999 8999986532 12
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCc----------eeeccCCc--cCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGS----------VYAPSFDH--GVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~----------~~~~~~~~--~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.+..+.+++|+..+ .++.+|...... .....+-. .........||||||||++| .+|+++|
T Consensus 414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22334555555433 344444211000 00000000 00111236799999999998 8999999
Q ss_pred Eec-----------chHHHHH-hcc--C-CeEEEEcChHHHH
Q 023106 213 LDG-----------GVWKDVS-SMF--D-EKWFIEVDLDTAM 239 (287)
Q Consensus 213 lDE-----------~~~~~l~-~~~--~-~~i~vtHd~~~~~ 239 (287)
||| .+.+.+. .+. + ..++|||+++...
T Consensus 494 lDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE 535 (555)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 999 2333332 221 2 3579999998654
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=198.17 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=106.4
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-----------eCCCCHHH
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-----------FDSQDPKE 149 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-----------~~g~~~~~ 149 (287)
+++++|++.. .+|++++ .+.+|+++||+||||||||||+|+|+|+++ |+.| +. ++|.++..
T Consensus 78 ~~~~~yg~~~---~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGVNG---FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecCCc---eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence 4788998632 2899999 899999999999999999999999999999 9999 65 78887643
Q ss_pred Hhh-----hCCCCC----CCChhHH--HHHHHHHhcCCcee-----eccCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 150 AHA-----RRGAPW----TFNPLLL--LNCLKNLRNQGSVY-----APSFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 150 ~~~-----~~~~~~----~~~~~~~--~tv~e~l~~~~~~~-----~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
... ...+.+ .++.+.+ .++.+++....... ...+. ....++.+.+|||||+|||+| .+
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 211 111121 2222211 26667665321000 00111 123467899999999999988 89
Q ss_pred CCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
|+++|||| .+++.|.++.+ .+|++|||++++..
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999 44555555533 35799999999875
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-22 Score=199.99 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=116.9
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHHhhhCCCCCCCChhHH---HH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEAHARRGAPWTFNPLLL---LN 167 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~~~~~~~~~~~~~~~~---~t 167 (287)
.+|+|+|+++++|++++|+||||||||||+++|+|..+ +. +| +.++|.++.....+..+.+++|.+.+ +|
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 48999999999999999999999999999999999987 64 68 89999875433333345566665432 69
Q ss_pred HHHHHhcCCceeecc-CC-----------------ccCCCCCCC------ceeccccceEEE-----ecCCEEeEec---
Q 023106 168 CLKNLRNQGSVYAPS-FD-----------------HGVGDPVED------DILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 168 v~e~l~~~~~~~~~~-~~-----------------~~~~~~~~~------~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
+.||+.+......+. .. ....+..++ .|||||||||.| .+|++++|||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 999998754432211 00 011233433 599999999988 8999999999
Q ss_pred --------chHHHHHhccCC---eEEEEcChH-HHHH---HHH----HHHhcCCCcHHHHH
Q 023106 216 --------GVWKDVSSMFDE---KWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 --------~~~~~l~~~~~~---~i~vtHd~~-~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+++.++++.+. +|+++|++. .+.. +++ |++++.|++.++..
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 556666665432 468889985 4443 554 88889999888753
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-22 Score=215.90 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=128.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|+... ..+|+|+||+|++|+.+||+|++|||||||+++|.|++. .+| |.+||.++... ..
T Consensus 1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHH
Confidence 599999999996421 238999999999999999999999999999999999975 478 99999876432 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCcee------------e----ccCCccCC---CCCCCceeccccceEEE-----e
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY------------A----PSFDHGVG---DPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~------------~----~~~~~~~~---~~~~~~LSgGekqRv~I-----~ 206 (287)
+..+.+.+|++.+ -|+.+||....... . .....+.. ......||||||||++| .
T Consensus 1291 R~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred HhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 3445555555543 57888886432110 0 00000111 11234699999999988 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+.+.|++.+.. +|+|+|.++.+.. |++ |++++.|++.++..
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999 455666666553 4799999999988 665 89999999999864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-22 Score=216.90 Aligned_cols=166 Identities=8% Similarity=0.149 Sum_probs=121.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
.|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.
T Consensus 636 ~i~~~~~~~~~~~~~--~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~---------- 700 (1522)
T TIGR00957 636 SITVHNATFTWARDL--PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS---------- 700 (1522)
T ss_pred cEEEEEeEEEcCCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECCE----------
Confidence 699999999997421 128999999999999999999999999999999999999 9999 888772
Q ss_pred CCCCCChhHH--HHHHHHHhcCCceeec----------------cCCc---cCCCCCCCceeccccceEEE-----ecCC
Q 023106 156 APWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDH---GVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 156 ~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~---~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
+.+++|.+.+ .|+.+|+.++...... .+.. .........|||||||||+| .+|+
T Consensus 701 i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 701 VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 2333333222 4778888775421100 0000 11234577899999999998 8999
Q ss_pred EEeEec-----------chHHHHHh---ccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSS---MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~---~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++|||| .+++.+.. +.. .+|+|||+++.+.. +++ |++++.|+.+++..
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 999999 34444432 222 35799999998876 444 78788888887753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-21 Score=163.75 Aligned_cols=123 Identities=21% Similarity=0.222 Sum_probs=84.7
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHh
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
.+|+|+||++++|++++|+||||||||||+++|. +++| +.+++..... .+..+.+.++ ...++.+.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~--~~~~~~~~~q----~~~l~~~~ 75 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKF--SRNKLIFIDQ----LQFLIDVG 75 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCccccc--ccccEEEEhH----HHHHHHcC
Confidence 3899999999999999999999999999999884 3467 7776653211 1111223222 22222222
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEE-----ec--CCEEeEec-----------chHHHHHhccC---CeEEEE
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VD--GNYLFLDG-----------GVWKDVSSMFD---EKWFIE 232 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~--p~lLllDE-----------~~~~~l~~~~~---~~i~vt 232 (287)
+ .....++.+.+||+||+||++| .+ |+++|+|| .+.+.+.++.+ .+|++|
T Consensus 76 L---------~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 76 L---------GYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred C---------CccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 1 1112455788999999999998 78 99999999 34455555432 246999
Q ss_pred cChHHHH
Q 023106 233 VDLDTAM 239 (287)
Q Consensus 233 Hd~~~~~ 239 (287)
|+++++.
T Consensus 147 H~~~~~~ 153 (176)
T cd03238 147 HNLDVLS 153 (176)
T ss_pred CCHHHHH
Confidence 9999863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-22 Score=187.77 Aligned_cols=143 Identities=21% Similarity=0.322 Sum_probs=103.0
Q ss_pred EECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCCCCCCCChhHH---HHHHHHHhcCCceee-c----
Q 023106 112 LAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P---- 181 (287)
Q Consensus 112 IiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~---- 181 (287)
|+||||||||||+++|+|+++ |++| +.++|.++... ...+.+.+.+|...+ +++.+|+.++..... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 689999999999999999999 9999 89999765321 123345566665432 689999987532110 0
Q ss_pred ---------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC----CeEEE
Q 023106 182 ---------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFI 231 (287)
Q Consensus 182 ---------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~----~~i~v 231 (287)
.+. ....++.+.+|||||||||+| .+|+++|||| .+++.|.++.. .+|++
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 000 112467899999999999998 8999999999 45555555532 25799
Q ss_pred EcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 232 EVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 232 tHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|||++++.. |++ |+++..|+++++..
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999876 444 77777888877643
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-22 Score=213.62 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=124.7
Q ss_pred EEEecCchhhhhhhh---------hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~---------~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+..+||++...... ....+|+|||+.+++|++++|+||||||||||+++|+|... ..+.+| +.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence 488899987763211 12348999999999999999999999999999999999865 112578 8899987
Q ss_pred HHHHhhhCCCCCCCChhH---HHHHHHHHhcCCceeecc-CC-----------------ccCCCCCC-----Cceecccc
Q 023106 147 PKEAHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPS-FD-----------------HGVGDPVE-----DDILVGLQ 200 (287)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~-~~-----------------~~~~~~~~-----~~LSgGek 200 (287)
......++.+++++|... .+|+.|++.+...+..+. .+ ....+..+ ..||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 543222333455555432 278999987753222110 00 01123333 58999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHH-HHH---HHH-----HHHhcCCCc
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHISTGKP 252 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~-~~~---rvi-----gr~i~~G~~ 252 (287)
|||.| .+|++|+||| .+++.|+++.+. +|+++|+++. +.. +++ |+++..|++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 99988 8999999999 456666665443 4699999974 333 433 467788886
Q ss_pred H---HHHHHHHHh
Q 023106 253 P---DVAKWRIEY 262 (287)
Q Consensus 253 ~---~~~~~~~~~ 262 (287)
. .-+..+++.
T Consensus 1106 ~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1106 GRNSHKIIEYFEA 1118 (1470)
T ss_pred ccccccHHHHHHh
Confidence 4 234455543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-21 Score=207.12 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=115.8
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHHhhhCCCCCCCChhH---HH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEAHARRGAPWTFNPLL---LL 166 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~~~~~~~~~~~~~~~---~~ 166 (287)
..+|+|+|+.|++|++++|+|||||||||||++|+|+++ |+ +| |.++|.++.....+..+.+++|... .+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 448999999999999999999999999999999999998 87 89 8999987644322333555555432 27
Q ss_pred HHHHHHhcCCceeec--------------------------------------------------cCCc----cCCCCCC
Q 023106 167 NCLKNLRNQGSVYAP--------------------------------------------------SFDH----GVGDPVE 192 (287)
Q Consensus 167 tv~e~l~~~~~~~~~--------------------------------------------------~~~~----~~~~~~~ 192 (287)
|+.|++.+....... ..+. ...+..+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 889988764321100 0000 0114456
Q ss_pred CceeccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcCh-HHHHH---HHH----H
Q 023106 193 DDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDL-DTAMQ---RVL----K 244 (287)
Q Consensus 193 ~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~-~~~~~---rvi----g 244 (287)
..|||||||||.| .+|+++++|| .+++.|+++.+ . +++++|+. .++.. +++ |
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 7899999999999 8999999999 56666666643 2 46888885 45544 554 8
Q ss_pred HHhcCCCcHHHH
Q 023106 245 RHISTGKPPDVA 256 (287)
Q Consensus 245 r~i~~G~~~~~~ 256 (287)
+++..|+++++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 888899887765
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-21 Score=210.58 Aligned_cols=167 Identities=14% Similarity=0.212 Sum_probs=119.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~~~~~~~~~ 154 (287)
.|+++|+++.|+... ...+|+|+||+|++|++++|+||+|||||||+++|+|.++ |.+ | +.+.+.
T Consensus 614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~~--------- 680 (1622)
T PLN03130 614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRGT--------- 680 (1622)
T ss_pred ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcCe---------
Confidence 599999999997421 1238999999999999999999999999999999999999 999 8 655432
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCcc---CCCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHG---VGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~---~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.++.|.+.+ .|+.|||.++...... .+..+ .-......|||||||||+| .+|
T Consensus 681 -Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~ 759 (1622)
T PLN03130 681 -VAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1622)
T ss_pred -EEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 3444444433 5777888776432110 01111 1122355799999999999 899
Q ss_pred CEEeEec-----------chHHH-HHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKD-VSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~-l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| ++++. +..... .+|+|||++..+.. +++ |++++.|+.+++..
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999 22222 222222 35799999988776 554 78888998888753
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=178.49 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=112.4
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhh
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR 153 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~ 153 (287)
+.|+|.++|+++.|.+.. .++++++|-|..+..+++|||||+|||||+|++.|.+. |..|.+..+......++.
T Consensus 386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLPRYN 459 (614)
T ss_pred CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccchhhh
Confidence 356899999999998764 38899999999999999999999999999999999999 999943333222222333
Q ss_pred CCCCCCCChhHHHHHHHHHhcCC-----------ceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 154 RGAPWTFNPLLLLNCLKNLRNQG-----------SVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~~tv~e~l~~~~-----------~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
+......+.. .+.++++.-.. .+....+.......+..+||+|||.||++ ..|.+|+|||
T Consensus 460 Qh~~e~ldl~--~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 460 QHLAEQLDLD--KSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred hhhHhhcCcc--hhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 3322222211 23333332211 01223445566778999999999999987 8999999999
Q ss_pred -----chHHHHHhcc---C-CeEEEEcChHHHHH
Q 023106 216 -----GVWKDVSSMF---D-EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -----~~~~~l~~~~---~-~~i~vtHd~~~~~~ 240 (287)
+.++.+.+.+ + ++|+||||+.++.+
T Consensus 538 nhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 538 NHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred cCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 3344444333 3 35799999999987
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-21 Score=195.98 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=141.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
...+.+++++|.|+.... +++++||.|++||+.|+.|+|||||||++++|.|..+ |++| +.+.|.++...
T Consensus 562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence 357999999999988653 8999999999999999999999999999999999999 9999 88888876431
Q ss_pred -hhhCCCCCCCChhHH---HHHHHHHhcCCceeecc-CC--------------ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS-FD--------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~~--------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
.....+++.+|...+ +|..|.+.+...+..-. .+ ....++.++.+|||+|+|+.+ .
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence 133446677776554 78889888876554311 11 123467799999999999866 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++++||| ++|..+.++.+. .|+.||.|+++.. |+. |+...-|+++++.
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 899999999 678888887763 4689999999998 655 8888889888876
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-21 Score=208.46 Aligned_cols=167 Identities=12% Similarity=0.169 Sum_probs=118.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee-eCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS-FDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~-~~g~~~~~~~~~~ 154 (287)
.|+++|+++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|+|.++ |++| +. +.+
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~~~~---------- 679 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVVIRG---------- 679 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEEecC----------
Confidence 599999999997421 1238999999999999999999999999999999999999 9887 43 222
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeec----------------cCCccC---CCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDHGV---GDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~~~---~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+.++.|.+.+ .|+.|||.++...... .+..+. -......||||||||++| .+|
T Consensus 680 ~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 680 SVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred cEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCC
Confidence 23444454433 5778888776432100 011111 112345799999999998 899
Q ss_pred CEEeEec-----------chHHH-HHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKD-VSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~-l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| ++++. +....+ ..|+|||++..+.. +++ |++++.|+.+++..
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999 23333 222222 35799999988766 444 78888998888753
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-21 Score=208.71 Aligned_cols=149 Identities=13% Similarity=0.220 Sum_probs=107.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH--HHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL--LNCLKNL 172 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~--~tv~e~l 172 (287)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.++|. +.+++|.+.+ .|+.+|+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g~----------iayv~Q~~~l~~~Ti~eNI 507 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSGR----------ISFSPQTSWIMPGTIKDNI 507 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCE----------EEEEeCCCccCCccHHHHH
Confidence 8999999999999999999999999999999999999 9999 888872 2233333221 4788888
Q ss_pred hcCCceeecc----------------CC---ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 173 RNQGSVYAPS----------------FD---HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 173 ~~~~~~~~~~----------------~~---~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
.++....... +. ..........|||||||||+| .+|+++|||| .+
T Consensus 508 ~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred HhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 7754221000 00 001123467899999999999 8999999999 34
Q ss_pred HHH-HHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 218 WKD-VSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 218 ~~~-l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++. +..+.. .+|++||+++.+.. +++ |++++.|+.+++..
T Consensus 588 ~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 443 333333 35799999998865 444 67777888877753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-21 Score=203.91 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=115.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCHHHH--hhhCCCCCCCChhH---HH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDPKEA--HARRGAPWTFNPLL---LL 166 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~~~~--~~~~~~~~~~~~~~---~~ 166 (287)
..+|+|+|+.+++|++++|+||||||||||+|+|+|++... .|.+| |.++|.++... ..+..+.+++|... .+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 34899999999999999999999999999999999986211 16889 99999876432 12233555555432 27
Q ss_pred HHHHHHhcCCceeec-----cC----------C--------ccCC-----CCCCCceeccccceEEE-----ecCCEEeE
Q 023106 167 NCLKNLRNQGSVYAP-----SF----------D--------HGVG-----DPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 167 tv~e~l~~~~~~~~~-----~~----------~--------~~~~-----~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
|+.|++.+...+..+ .. + .... +..+..|||||||||.| .+|++++|
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 899988764322110 00 0 0011 23457799999999998 89999999
Q ss_pred ec-----------chHHHHHhccCC----eEEEEcCh-HHHHH---HHH----HHHhcCCCcHHHH
Q 023106 214 DG-----------GVWKDVSSMFDE----KWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~~----~i~vtHd~-~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|| .+++.|+++.+. +|+++|+. +.+.. +++ |+++..|++.++.
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99 566666666532 46888996 45544 554 8888899887764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-20 Score=174.17 Aligned_cols=175 Identities=20% Similarity=0.262 Sum_probs=131.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.+.+.+|++.|+... ++|+++||+++.|+.++|+|++|+||||++++|...+. +.+| |.+||+++... ..
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 488999999997654 38999999999999999999999999999999999999 9999 99999987542 33
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee--------------------c-cCCccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------P-SFDHGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------~-~~~~~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..++.++|+..+ -+.+.|++++..... | .|+.... ...-.|||||||||+|
T Consensus 336 R~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg-erglklSggekqrvaiar~i 414 (497)
T COG5265 336 RRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG-ERGLKLSGGEKQRVAIARTI 414 (497)
T ss_pred HHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc-hheeeccCchHHHHHHHHHH
Confidence 3335555555433 577788887643210 0 0111111 2334589999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|.+|++|| ++...|.+.... .+++-|-+..+.. .++ |+++++|+-++++..
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 8999999999 344444444433 5899999998877 443 899999999998654
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-22 Score=160.35 Aligned_cols=117 Identities=18% Similarity=0.255 Sum_probs=80.1
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---HhhhCCCCCCCChhHH---HHHH
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHARRGAPWTFNPLLL---LNCL 169 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~~~~~~~~~~~~~---~tv~ 169 (287)
|+|+||+|++|++++|+|+||||||||+++|+|..+ |++| +.++|.++.. ...+..+.+.++...+ .++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999999999999999999 9999 8899876643 2222333333333221 3333
Q ss_pred HHHhcC------CceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEecc
Q 023106 170 KNLRNQ------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDGG 216 (287)
Q Consensus 170 e~l~~~------~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~ 216 (287)
++.... ..+....+.....++....||+||||||.| .+|+++||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 331000 000011111222234459999999999988 89999999994
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=149.99 Aligned_cols=174 Identities=19% Similarity=0.207 Sum_probs=113.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
++++++|...- -|-.+|.++..|+++-+|||||||||||+-.++|++ |.+| |.++|.++...
T Consensus 3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eL 70 (248)
T COG4138 3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATEL 70 (248)
T ss_pred eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHH
Confidence 68888886432 356789999999999999999999999999999987 5788 99999986432
Q ss_pred -hhhCCCCCCCChhHHHHHHHHHhcCCcee----------eccCCccCCCCCCCceeccccceEEE------------ec
Q 023106 151 -HARRGAPWTFNPLLLLNCLKNLRNQGSVY----------APSFDHGVGDPVEDDILVGLQHKVVI------------VD 207 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~~tv~e~l~~~~~~~----------~~~~~~~~~~~~~~~LSgGekqRv~I------------~~ 207 (287)
+.+....+.-.....+-|+..+.+...-. ....-.+...+..++|||||-|||-+ -.
T Consensus 71 ArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~ 150 (248)
T COG4138 71 ARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPA 150 (248)
T ss_pred HHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcc
Confidence 11111111111111234444443321110 00000122346788999999999876 23
Q ss_pred CCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HH--H--HHHhcCCCcHHHHHHHHHh
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RV--L--KRHISTGKPPDVAKWRIEY 262 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rv--i--gr~i~~G~~~~~~~~~~~~ 262 (287)
+.+||+|| .+-..+.+++.. +||.+||++...+ ++ + |+.+..|..+++....+..
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~ 226 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLA 226 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHH
Confidence 58999999 223344455554 4688899999888 33 3 7888899999986655443
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-19 Score=146.85 Aligned_cols=167 Identities=20% Similarity=0.179 Sum_probs=106.8
Q ss_pred EEEecCchhhhhhh---hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC------
Q 023106 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD------ 146 (287)
Q Consensus 77 ~i~~~~l~~~y~~~---~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~------ 146 (287)
.|.++||+|+|--. .-..++++++||++..|||+++-||+|+|||||||+|-|.+. |++| |.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence 58899999999311 113558999999999999999999999999999999999999 9999 6654321
Q ss_pred ---HHH--HhhhCCCCCCCChhHH---HHHHHHHhcCC-----ce-----------eeccCCccCCCCCCCceeccccce
Q 023106 147 ---PKE--AHARRGAPWTFNPLLL---LNCLKNLRNQG-----SV-----------YAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 147 ---~~~--~~~~~~~~~~~~~~~~---~tv~e~l~~~~-----~~-----------~~~~~~~~~~~~~~~~LSgGekqR 202 (287)
+.. ..++..++++.|+... ...++.++.+. .. ..-........-.|.++|||||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR 160 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR 160 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee
Confidence 111 1223335555544332 12222222110 00 000111223455788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccCCe---EEEEcChHHHHHHHHHHHh
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFDEK---WFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~~~---i~vtHd~~~~~~rvigr~i 247 (287)
|.| .+-.+||||| -+.+.|.+....+ +=|-||.+.... +..|++
T Consensus 161 VNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~-vadR~~ 223 (235)
T COG4778 161 VNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREA-VADRLL 223 (235)
T ss_pred hhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHH-Hhhhee
Confidence 998 7778999999 3455555544432 455688766543 444443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-20 Score=200.40 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=105.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH--HHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL--LNCLKNL 172 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~--~tv~e~l 172 (287)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++| +.+.+ .+.+.+|.+.+ .|+.+|+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~~----------~i~yv~Q~~~l~~~Tv~enI 741 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAER----------SIAYVPQQAWIMNATVRGNI 741 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC----------eEEEEeCCCccCCCcHHHHH
Confidence 8999999999999999999999999999999999999 9999 65532 13333333221 4778888
Q ss_pred hcCCceeec----------------cC---CccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------ch
Q 023106 173 RNQGSVYAP----------------SF---DHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GV 217 (287)
Q Consensus 173 ~~~~~~~~~----------------~~---~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~ 217 (287)
.++...... .+ ...........|||||||||+| .+|+++|||| .+
T Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred HcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 765321100 00 0011245688999999999999 8999999999 22
Q ss_pred HHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 218 WKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 218 ~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
++.+ ..... .+|++|||++.+.. +++ |++++.|+.+++..
T Consensus 822 ~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 822 VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 2221 11222 25799999999865 444 77778888887654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-19 Score=178.82 Aligned_cols=180 Identities=16% Similarity=0.216 Sum_probs=122.8
Q ss_pred EEecCchhhhhhhh-hccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~-~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
+..++++....+.. ....+|++||..+++|++.||+||+|||||||+++|+|........+| +.++|+.......+.-
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 45555554443221 123499999999999999999999999999999999999872123578 8999965433333333
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceeeccC-Cc-----------------cCCCCCC-----CceeccccceEEE----
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYAPSF-DH-----------------GVGDPVE-----DDILVGLQHKVVI---- 205 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~~~~-~~-----------------~~~~~~~-----~~LSgGekqRv~I---- 205 (287)
.+++.|+.. .+||.|.+.+...+..+.- .. ...+..+ ..+|||||+||.|
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 444444433 4899999988766554431 10 1123344 4599999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eE-EEEcChHHHHH----HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KW-FIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i-~vtHd~~~~~~----rvi----gr~i~~G~~~~~~~ 257 (287)
.+|.+|++|| .+++.|++++.. +| +.-|.+.--.- +++ |+.+..|++.+...
T Consensus 186 l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 186 LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 9999999999 456666666554 34 44477654333 555 88889999976643
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-19 Score=163.05 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=108.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----Hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~ 151 (287)
-||++||.+.|.... .-+..||++|++||+|.|+|.||||||||+++|.|+.. |++| |.+||..+.. .|
T Consensus 322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHHH
Confidence 599999999997653 24789999999999999999999999999999999999 9999 9999986521 11
Q ss_pred hhCCCCCCCChhHH----------------HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 152 ARRGAPWTFNPLLL----------------LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 152 ~~~~~~~~~~~~~~----------------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
+. =..-+|.++.+ ..-++.+........ ....-..-.||.|||+|+++ -+-++
T Consensus 396 R~-LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl-----~d~~fs~~kLStGQkKRlAll~AllEeR~I 469 (546)
T COG4615 396 RK-LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSL-----NDGRFSNLKLSTGQKKRLALLLALLEERDI 469 (546)
T ss_pred HH-HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcc-----cCCcccccccccchHHHHHHHHHHHhhCCe
Confidence 11 01111111111 111112221111110 11122455799999999987 67799
Q ss_pred EeEec---------------chHHHHHhccCCeEEEEcChHHHHH--HHH----HHHhc
Q 023106 211 LFLDG---------------GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIS 248 (287)
Q Consensus 211 LllDE---------------~~~~~l~~~~~~~i~vtHd~~~~~~--rvi----gr~i~ 248 (287)
+++|| ..+..+++.-+.++.||||-.-... |++ |++++
T Consensus 470 lv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred EEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999 3455666666667899999765444 555 66655
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=143.36 Aligned_cols=179 Identities=37% Similarity=0.616 Sum_probs=136.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-----eeeCCCCHHHH-h------hhCCCCCCCChhHHHHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-----SSFDSQDPKEA-H------ARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-----i~~~g~~~~~~-~------~~~~~~~~~~~~~~~tv~e~ 171 (287)
-.+..++||+||||||||||++.|+++++ +.+| +.+++...... . ...+.+..++...+..++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRR 106 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHH
Confidence 34688999999999999999999999999 8777 23344322111 1 11234445555555677777
Q ss_pred HhcCC-ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCC
Q 023106 172 LRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG 250 (287)
Q Consensus 172 l~~~~-~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G 250 (287)
+..+. ....+.|+.................++.|.++.++++++..+..+...++.+|++..+.+...+|+..|....|
T Consensus 107 l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g 186 (229)
T PRK09270 107 LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGG 186 (229)
T ss_pred HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcC
Confidence 77665 56667777655544333333333567888999999999888888999999999999999999889998877789
Q ss_pred CcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 251 KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
...+.+..++..++.++.+++.+.+..||+||++.
T Consensus 187 ~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 187 LSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred CCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 88888888888788999999999999999999875
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=144.71 Aligned_cols=174 Identities=22% Similarity=0.298 Sum_probs=125.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-ee---eCCCCHHHH-------hhhCCCCCCCChhHHHHHHHHHhcC
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SS---FDSQDPKEA-------HARRGAPWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~---~~g~~~~~~-------~~~~~~~~~~~~~~~~tv~e~l~~~ 175 (287)
++||.|+||||||||++.|++++. + .++ +. .||.-.... ....+.+..++...+...++.+..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g 77 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSG 77 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCC
Confidence 589999999999999999999996 4 233 33 466532111 1124566777777778888888884
Q ss_pred -CceeeccCCccCCCCCCCceeccccceEEEecCCEEeEec-chHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-----
Q 023106 176 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----- 248 (287)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE-~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~----- 248 (287)
..+..|.|+....++.+....--...+|.|.||.+++.|| ..|..+.+++|..|||+.|.+.+..|++.|...
T Consensus 78 ~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~ 157 (220)
T cd02025 78 KKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETA 157 (220)
T ss_pred CCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 5677888888776655544332345689999999999885 567779999999999999999876655533221
Q ss_pred -----------CCCcHHH----HHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 249 -----------TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 249 -----------~G~~~~~----~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
.|-+.+- +...|.+.++|+++ ||.|++..||+||+..
T Consensus 158 ~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 158 FSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 3433332 23346679999995 9999999999999853
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=146.15 Aligned_cols=181 Identities=20% Similarity=0.281 Sum_probs=131.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee---eCCCCHHHH-------hhhCCCCCCCChhHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS---FDSQDPKEA-------HARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~---~~g~~~~~~-------~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
....++||.||||||||||+++|.+++. .+|.+| +. .||...... ....+.+..++...+...+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS-RWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 4578999999999999999999999986 224455 43 355432111 12345677777777788888888
Q ss_pred cCCc-eeeccCCccCCCCCCCceeccccceEEEecCCEEeEe------cchHHHHHhccCCeEEEEcChHHHHHHHHHHH
Q 023106 174 NQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRH 246 (287)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllD------E~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~ 246 (287)
.+.. +..|.|++...++.+...---+...|.|.+|.+++.+ +..|..+.+++|..|||+.|.+.+..|.+.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 8764 7789999887776665433335678999999888743 45577889999999999999999987666432
Q ss_pred h-----c-----------CCCcH-H---HHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 247 I-----S-----------TGKPP-D---VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 247 i-----~-----------~G~~~-~---~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
. + .|-++ + .+...|.....|+.. +|+|++.+||+||++.+
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 2 1 12222 2 234568889999996 99999999999998643
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-19 Score=151.00 Aligned_cols=128 Identities=14% Similarity=0.108 Sum_probs=83.6
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc----------eeeCCCCHHHHhhhCCCCCCCChhHHH-
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA----------SSFDSQDPKEAHARRGAPWTFNPLLLL- 166 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G----------i~~~g~~~~~~~~~~~~~~~~~~~~~~- 166 (287)
+++++++.+| +++|+||||||||||+++|+|++. +..| +++.|++.........+.+.||.+...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 5788999999 999999999999999999999986 5433 334444321111111234445433221
Q ss_pred ------HHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHH
Q 023106 167 ------NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 167 ------tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~ 220 (287)
.+.+.+.. ....++.+..||+|||||++| .+|+++++|| .+++.
T Consensus 90 ~~~~~~~~~~~l~~----------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~ 159 (197)
T cd03278 90 SIISQGDVSEIIEA----------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL 159 (197)
T ss_pred eEEehhhHHHHHhC----------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11111111 223456889999999999977 1458999999 45555
Q ss_pred HHhccCC--eEEEEcChHHHH
Q 023106 221 VSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 221 l~~~~~~--~i~vtHd~~~~~ 239 (287)
|+++.+. +|++|||++.+.
T Consensus 160 l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 160 LKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred HHHhccCCEEEEEECCHHHHh
Confidence 5555432 579999998763
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-19 Score=184.91 Aligned_cols=169 Identities=11% Similarity=0.212 Sum_probs=128.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
...++++|.+++.+.. .....|+||||+|++|+.+||+|+-|||||+|+.+|.|.++ ..+| +.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-------- 583 (1381)
T ss_pred CceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe--------
Confidence 3469999999998762 23348999999999999999999999999999999999999 9999 888885
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeeccCCc-------------------cCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDH-------------------GVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~-------------------~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.++.|.+-+ -|+.|||.|+.......|+. ..--...-.|||||||||+| .+
T Consensus 584 --iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 584 --VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred --EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 3455554433 58888888876654333321 11123566899999999999 99
Q ss_pred CCEEeEec-----------chHHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.++.|||. ++++.. ..+.+ ..|+|||.++.... .++ |++.+.|+.+++..
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999998 333332 23333 35799999998887 444 89999999998874
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-19 Score=162.68 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=102.5
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhh
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR 153 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~ 153 (287)
.-|++-+.+|+|.|.+.. +++..++|-|.--..|+|+||||.||||||++|.|-+. |..|..-.++.+....+.
T Consensus 583 ~PPvLGlH~VtFgy~gqk---pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQK---PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNHRLRIGWFD 656 (807)
T ss_pred CCCeeecccccccCCCCC---chhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccceeeeechh
Confidence 346899999999995543 28899999999999999999999999999999999999 998833222222111111
Q ss_pred CCCCCCCChhHHHHHHHHHhcCCcee-------eccC--CccCCCCCCCceeccccceEEE-----ecCCEEeEec----
Q 023106 154 RGAPWTFNPLLLLNCLKNLRNQGSVY-------APSF--DHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---- 215 (287)
Q Consensus 154 ~~~~~~~~~~~~~tv~e~l~~~~~~~-------~~~~--~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---- 215 (287)
+......... .+..+.+.-...+. ...| ....+.-.+..|||||+.||++ ..|++|||||
T Consensus 657 Qh~~E~L~~E--etp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNN 734 (807)
T KOG0066|consen 657 QHANEALNGE--ETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNN 734 (807)
T ss_pred hhhHHhhccc--cCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCC
Confidence 1100000000 12222222111000 0011 1112234567899999999987 8899999999
Q ss_pred -------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 216 -------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
.+-+.|.++...+|+||||..++.+
T Consensus 735 LDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 735 LDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred cchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 2344455555567899999888766
|
|
| >KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=138.61 Aligned_cols=182 Identities=42% Similarity=0.657 Sum_probs=156.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccc---C-----CCcc-eeeCCC-----------CHHHHhhhCCCCCCCChhH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKI---W-----PQKA-SSFDSQ-----------DPKEAHARRGAPWTFNPLL 164 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~---~-----p~~G-i~~~g~-----------~~~~~~~~~~~~~~~~~~~ 164 (287)
...+++|+.|+.|+||||++..+....+.. + +-.- +-++|. +++.++.++|.++.|+...
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~l 196 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNL 196 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHH
Confidence 357899999999999999999998854421 1 1011 224664 3556678899999999988
Q ss_pred HHHHHHHHh--cCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHH
Q 023106 165 LLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 242 (287)
Q Consensus 165 ~~tv~e~l~--~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rv 242 (287)
+++...-++ ....++.|.|+++..+..+.++-..-+.|+.|.++++||||++.|+.+.++++...++.-|.+.+++|+
T Consensus 197 fl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RV 276 (323)
T KOG2702|consen 197 FLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERV 276 (323)
T ss_pred HHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHH
Confidence 888777777 456688999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC--CcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCCC
Q 023106 243 LKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286 (287)
Q Consensus 243 igr~i~~G--~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 286 (287)
..|.+..| .+.+...|++..+++++.++|..+.-.+|++|+..|
T Consensus 277 a~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~n 322 (323)
T KOG2702|consen 277 AKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIRN 322 (323)
T ss_pred HHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhhc
Confidence 99999999 899999999999999999999999999999988654
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-18 Score=153.37 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=28.4
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLl 124 (287)
+|+++||+|++||++||+|+||||||||+
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 89999999999999999999999999996
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=137.06 Aligned_cols=173 Identities=24% Similarity=0.351 Sum_probs=128.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc--eeeCCC-----CHHH---HhhhCCCCCCCChhHHHHHHHHHhcCC
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA--SSFDSQ-----DPKE---AHARRGAPWTFNPLLLLNCLKNLRNQG 176 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G--i~~~g~-----~~~~---~~~~~~~~~~~~~~~~~tv~e~l~~~~ 176 (287)
-+|||.|++|||||||.+.|...+... .+..- +..|+. .... ...+.+.|..++...+...+..+..+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g~ 83 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGK 83 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcCC
Confidence 589999999999999999887655310 02211 112332 1111 123456778888888888888888887
Q ss_pred ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcHHH
Q 023106 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDV 255 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~~~ 255 (287)
.+..|.|+.....+....... ...+|.|.||.+++.+ ..+.++++..|||+++.++...|++.|++. +|.+.+-
T Consensus 84 ~i~~P~yd~~~~~~~~~~~~i-~p~~ViIvEGi~~l~~----~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~ 158 (210)
T PTZ00301 84 TVQIPQYDYVHHTRSDTAVTM-TPKSVLIVEGILLFTN----AELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFES 158 (210)
T ss_pred cccCCCcccccCCcCCceEEe-CCCcEEEEechhhhCC----HHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHH
Confidence 788888887665544333333 2357888899888766 467888899999999999999999988886 7998888
Q ss_pred HHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 256 AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 256 ~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+...|...+.|++. ||.|++..||+||+..
T Consensus 159 v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 159 VIEQYEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred HHHHHHHhhcccHHHHcCccccCCcEEEcCC
Confidence 87878887888887 9999999999999854
|
|
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=135.97 Aligned_cols=173 Identities=30% Similarity=0.421 Sum_probs=134.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCC----C-H-HH--HhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQ----D-P-KE--AHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~----~-~-~~--~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.+.-+|||.|++||||||+.+.|...+. ...- +..|.. . . .. .......+..++...+.+.+.+|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~---~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG---VEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC---cCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHc
Confidence 3567999999999999999999999987 3321 223322 1 1 11 1122346778888888899999999
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcH
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPP 253 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~ 253 (287)
+..+..|.|+.....+.....-. +.++|.|.+|-+++.| +.|+++++-.|||+.|.+....|.+-|++. +|..-
T Consensus 83 g~~v~~P~yd~~~~~r~~~~i~~-~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 83 GKPVDLPVYDYKTHTREPETIKV-EPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred CCcccccccchhcccccCCcccc-CCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence 99998898887666554322211 4588999999999999 688899999999999999988888877775 88877
Q ss_pred HHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 254 DVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+-+...|...++|+++ ||+|+++.||++|+..
T Consensus 158 e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 158 ESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHHHHHHHHhhChhhhhccCcccccceEEeecC
Confidence 7777778889999999 9999999999999864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-18 Score=178.02 Aligned_cols=175 Identities=22% Similarity=0.278 Sum_probs=126.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
-|+++|++.+|.... -.||+||||+|++||.|||||..|||||||+++|-.+.. |.+| |.+||.++.. .
T Consensus 1138 ~I~f~~~~~RYrp~l--p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNL--PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCC--cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 699999999997642 239999999999999999999999999999999999999 9999 9999987633 2
Q ss_pred hhhCC-CCCCC-----------------ChhHHHHHHHHHhcCCceeeccCCccC---CCCCCCceeccccceEEE----
Q 023106 151 HARRG-APWTF-----------------NPLLLLNCLKNLRNQGSVYAPSFDHGV---GDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 151 ~~~~~-~~~~~-----------------~~~~~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~~LSgGekqRv~I---- 205 (287)
+.+.+ +|+.+ .+..+..++|...+...+. ....+. -..-...+|.||||-++|
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVS--SLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHh--hCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 32222 22221 1112233333332221111 111111 122346799999999988
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCCe--EEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDEK--WFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~~--i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+.++|+||| -+-+.|++.+++. +.|-|.++.+.. ||+ |++++.|+|.++...
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC
Confidence 8999999999 3455677777663 577899999999 777 999999999998753
|
|
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=136.11 Aligned_cols=172 Identities=34% Similarity=0.482 Sum_probs=120.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhccc-CC---Ccc-eeeCCCCHHH----Hh------hhCCCCCCCChhHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKI-WP---QKA-SSFDSQDPKE----AH------ARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~-~p---~~G-i~~~g~~~~~----~~------~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
+|||.||+|||||||.+.|...+... .+ ..+ +.+++..... .. .....+..++...+...+..+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 69999999999999999999999721 11 112 2334432111 11 1122455666666778888888
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCc
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKP 252 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~ 252 (287)
.+..+..|.|+............ -....|.|.+|.++++||. ++++++..||+..+.+....|.+.|++. .|..
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~-~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~ 155 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIII-ISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLERRIQRDVAERGRS 155 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEE-EES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-
T ss_pred CCCcccccccccccccceeeeee-cCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHHHHhhhhccccCCc
Confidence 88888888887665543331111 1346788888888888743 8889999999999999998888888775 7998
Q ss_pred HHHHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 253 PDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
.+-+..+|. .+.|.+. ||+|++..||+||++.+
T Consensus 156 ~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 156 PEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred ceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 887777777 8888887 99999999999999765
|
7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-17 Score=152.63 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=98.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhh--C
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR--R 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~--~ 154 (287)
=|.+.+++..||++. +|.+-++++..|..+||+|+||+|||||||+|+.---..+|..- .+.|-.+...... .
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veq-E~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQ-EVRGDDTEALQSVLES 154 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchh-heeccchHHHhhhhhc
Confidence 377888999999987 99999999999999999999999999999999872110112211 0111111110000 0
Q ss_pred C---CCCCCChh------HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----
Q 023106 155 G---APWTFNPL------LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----- 215 (287)
Q Consensus 155 ~---~~~~~~~~------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----- 215 (287)
+ ..+..+.. .+..+..+ .+....|..++..+....||||.|.|++| .+|++|||||
T Consensus 155 D~~~~dfl~~e~~l~~~~~l~ei~~~-----~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhL 229 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLAGLTLEEIYDK-----ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHL 229 (582)
T ss_pred cHHHHHHHHhhhhhhccchHHHHHHH-----HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccc
Confidence 0 00000000 01111111 22344677777888999999999999988 8999999999
Q ss_pred --chHHHHHhc----cCCeEEEEcChHHHHH
Q 023106 216 --GVWKDVSSM----FDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 --~~~~~l~~~----~~~~i~vtHd~~~~~~ 240 (287)
..+.-|..+ -...++||||..++..
T Consensus 230 Dv~av~WLe~yL~t~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 230 DVVAVAWLENYLQTWKITSLIVSHDRNFLNT 260 (582)
T ss_pred hhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence 222233333 3345799999999876
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=146.85 Aligned_cols=170 Identities=21% Similarity=0.305 Sum_probs=121.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhh--hCCCCCCCChhHHHHHHHHHhcCCceeecc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQGSVYAPS 182 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~--~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 182 (287)
.--+|||.||||||||||++.|++++ |..| +.+||........ ....+..++...+...+..+..+..+..|.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPi 139 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPI 139 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCc
Confidence 45799999999999999999999987 4567 7788864221111 111233333334455566677777778888
Q ss_pred CCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHH-HHHhcCCCcHHHHHHHHH
Q 023106 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVL-KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 183 ~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvi-gr~i~~G~~~~~~~~~~~ 261 (287)
|+.....+.....---...+|.|.+|.+++. ..+++++|..|||+.|.+....|.+ .++.+.|...+-+..++.
T Consensus 140 YDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-----~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~ 214 (656)
T PLN02318 140 YDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-----EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQIS 214 (656)
T ss_pred cccccCcccCCceeecCCCcEEEEechhhcc-----HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8876554332111011246788899988875 4688899999999977776666444 555568888777778888
Q ss_pred hcCccchh-hhcccCCCCCEEEeC
Q 023106 262 YNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 262 ~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
..++|++. |++|.+..||+||.+
T Consensus 215 ~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 215 ETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HhhcchHHHHhCcchhcceEEEec
Confidence 89999999 999999999999965
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.1e-17 Score=152.15 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=111.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCH--HHH----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP--KEA---- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~--~~~---- 150 (287)
-+.++|+++.|.+.. +++|+.|++.+|+.+||+|+|||||||+|++|.|......+..+++...++. ...
T Consensus 75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 489999999998877 9999999999999999999999999999999999887111122333333211 000
Q ss_pred --------------hhhCCCC---CCCChhHHHHHHHHHhcC----------CceeeccCCccCCCCCCCceeccccceE
Q 023106 151 --------------HARRGAP---WTFNPLLLLNCLKNLRNQ----------GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 151 --------------~~~~~~~---~~~~~~~~~tv~e~l~~~----------~~~~~~~~~~~~~~~~~~~LSgGekqRv 203 (287)
+...... ..+....+.+.++.+..- ..+..-.|.....++....||||++.|+
T Consensus 151 ~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 151 AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence 0000000 001111112222221110 0011224445566788999999999999
Q ss_pred EE-----ecCCEEeEec----------chHHHHHhccCC--eEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 204 VI-----VDGNYLFLDG----------GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 204 ~I-----~~p~lLllDE----------~~~~~l~~~~~~--~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
+| .+|.+||||| ..++....-++. .|+++|+.+.+-. .++ ++.+ +.|+-+....
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 88 9999999999 123333333444 4699999999987 454 3423 4677666543
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=128.21 Aligned_cols=174 Identities=26% Similarity=0.384 Sum_probs=116.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc-eeeCCCCH--HH--HhhhCC----CCCCCChhHHHHHHHHHh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA-SSFDSQDP--KE--AHARRG----APWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G-i~~~g~~~--~~--~~~~~~----~~~~~~~~~~~tv~e~l~ 173 (287)
-++|+++||+||||||||||++.|+++++ +. .+ +..++.-. .. .....+ .+..++...+...++.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 79 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG---KLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLK 79 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc---ccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHH
Confidence 36899999999999999999999999987 52 22 33333211 01 011111 222333333456666666
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCc
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKP 252 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~ 252 (287)
.+..+..+.|+....++....... +...+.|.++.+++++ +.+.+.++..|+|+.+.+....|++.|... .|..
T Consensus 80 ~g~~v~~p~yd~~~~~~~~~~~~~-~~~~~vIieG~~~~~~----~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~ 154 (207)
T TIGR00235 80 NGSPIDVPVYDYVNHTRPKETVHI-EPKDVVILEGIMPLFD----ERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRS 154 (207)
T ss_pred CCCCEecccceeecCCCCCceEEe-CCCCEEEEEehhhhch----HhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCC
Confidence 666677777776544432221111 2345556666655554 346677888899999999998888877654 7887
Q ss_pred HHHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 253 PDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
.+.+...|...+++++. ++.+.+..||+||++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~ 188 (207)
T TIGR00235 155 LDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEG 188 (207)
T ss_pred HHHHHHHHHHhhhhhHHHhCcccccccEEEEcCC
Confidence 77777778778889886 8899999999999853
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-15 Score=133.24 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=133.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCcc-eeeCCCCHHH-------HhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKA-SSFDSQDPKE-------AHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~--~p~~G-i~~~g~~~~~-------~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
...-+|||.|++|||||||++.|..++... .+..+ +.+||.-... ...+.|.|..++...+...+..+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~ 163 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKS 163 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHc
Confidence 356799999999999999999999988521 01223 4566652111 1124567888888888899999998
Q ss_pred CCc-eeeccCCccCCCCCCCceeccccceEEEecCCEEeEecc--hHHHHHhccCCeEEEEcChHHHHHHHHHHHhc---
Q 023106 175 QGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS--- 248 (287)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~--~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~--- 248 (287)
+.. +..|.|++...+..+.+.-.-+..+|.|.+|.+++.++. -+..+.+++|..|||+-|.+.+.+|.+.|.+.
T Consensus 164 G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~ 243 (311)
T PRK05439 164 GKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRE 243 (311)
T ss_pred CCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 876 788899887776654443333567899999988776553 47778999999999999999988766644332
Q ss_pred -------------CCCcHH----HHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 249 -------------TGKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 249 -------------~G~~~~----~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
.|.+.+ .+...|...+.||.+ +|+|++.+||+||++.
T Consensus 244 ~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 244 TAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred hhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 233333 345667789999995 9999999999999864
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-16 Score=148.23 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=94.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~ 156 (287)
+++-.+++|.|++.. |.--.=+|..||++|++||||-|||||+++|+|.++ |++|- ..++...+..|.+
T Consensus 342 lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~---~~~~~vSyKPQyI 410 (591)
T COG1245 342 LVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS---EEDLKVSYKPQYI 410 (591)
T ss_pred eeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC---CccceEeecceee
Confidence 577778888887643 333345677899999999999999999999999999 99884 2222222222222
Q ss_pred CCCCChhHHHHHHHHHhcC------Ccee-----eccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----
Q 023106 157 PWTFNPLLLLNCLKNLRNQ------GSVY-----APSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----- 215 (287)
Q Consensus 157 ~~~~~~~~~~tv~e~l~~~------~~~~-----~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----- 215 (287)
...++ .||.+.+... ...+ .|.--....++.+..|||||.|||+| .++++.||||
T Consensus 411 ~~~~~----gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 411 SPDYD----GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred cCCCC----CcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 22222 2222222211 1111 11111223467889999999999998 8999999999
Q ss_pred ------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 ------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+-+.|+.... ..++|.||+-++.-
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 22233333332 24699999887754
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-16 Score=142.11 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=84.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHH-----HHhcc--cCCCc----------c--eeeCCCCH--------H
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQK----------A--SSFDSQDP--------K 148 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~-----Gll~~--~~p~~----------G--i~~~g~~~--------~ 148 (287)
.|+|+|++|+.|.+++|+|++|||||||++.+. ..+.. ..|.. . +.++..++ .
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 789999999999999999999999999998663 11110 00111 1 23333211 0
Q ss_pred H-H--h---hh------CC---------CCCCCCh---hHHHHHHHHHhcCCceee----------ccCCccCCCCCCCc
Q 023106 149 E-A--H---AR------RG---------APWTFNP---LLLLNCLKNLRNQGSVYA----------PSFDHGVGDPVEDD 194 (287)
Q Consensus 149 ~-~--~---~~------~~---------~~~~~~~---~~~~tv~e~l~~~~~~~~----------~~~~~~~~~~~~~~ 194 (287)
. . . +. .| +.+.... ...+++.|++.+...+.. ........++.+.+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~ 169 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATT 169 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCcccc
Confidence 0 0 0 00 00 0111111 111566666655332210 01111123567889
Q ss_pred eeccccceEEE-----e---cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 195 ILVGLQHKVVI-----V---DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 195 LSgGekqRv~I-----~---~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|||||+||+.| . +|+++|||| .+++.+.++.+ .+|++|||++++..
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 99999999988 3 379999999 44555555543 25799999998754
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-16 Score=147.27 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=125.5
Q ss_pred cccCCCCCcccc-chhhhhc--CcCcCcccCccch-hhhhhhhhh-----------hhh-hcCCCccEEEecCchhhhhh
Q 023106 26 RGELPSGHHGFL-SFSWIRR--NANAQPVFGKTRS-LVQNKTSLK-----------VLC-SQRREIPVVEARCMDEVYDA 89 (287)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~r--~~~~~~~~~~~r~-~~~~~~~~~-----------~~~-~~~~~~~~i~~~~l~~~y~~ 89 (287)
+++.|.....++ .+.++.+ -+++++...++|+ .+++....+ .+. -.....|.+++.+|++.|..
T Consensus 295 qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p 374 (582)
T KOG0062|consen 295 QREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTP 374 (582)
T ss_pred hhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCC
Confidence 344444333332 4577776 3456777777774 222211100 011 01113468999999999965
Q ss_pred hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCccee-eCCCCHHHHhhhCCCCCCCChhHHHHH
Q 023106 90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQDPKEAHARRGAPWTFNPLLLLNC 168 (287)
Q Consensus 90 ~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~-~~g~~~~~~~~~~~~~~~~~~~~~~tv 168 (287)
.. ...+.+++++++--..++++|+||+||||+++++.|.+. |..|+. +.+. .+..+..+.....+ ....+.
T Consensus 375 ~~--y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~r-~ri~~f~Qhhvd~l--~~~v~~ 446 (582)
T KOG0062|consen 375 SE--YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHPR-LRIKYFAQHHVDFL--DKNVNA 446 (582)
T ss_pred cc--hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeeccc-ceecchhHhhhhHH--HHHhHH
Confidence 43 137899999999999999999999999999999999998 999943 3332 11111111100001 111233
Q ss_pred HHHHhc---CCc-------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------c----hHHHHH
Q 023106 169 LKNLRN---QGS-------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------G----VWKDVS 222 (287)
Q Consensus 169 ~e~l~~---~~~-------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~----~~~~l~ 222 (287)
++.+.. +.. +.....+.......+..||||||.||++ .+|++|+||| + +.+.|.
T Consensus 447 vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 447 VDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 333322 110 0111233344455578899999999988 8999999999 2 233344
Q ss_pred hccCCeEEEEcChHHHHH
Q 023106 223 SMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 223 ~~~~~~i~vtHd~~~~~~ 240 (287)
.....+|+||||.+++..
T Consensus 527 ~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 527 NFNGGVVLVSHDEEFISS 544 (582)
T ss_pred hcCCcEEEEECcHHHHhh
Confidence 433456799999999976
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-16 Score=138.86 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=36.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
|+++|. |+|++.. ++.+++ |++++|+||||||||||+++|.+++
T Consensus 4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 667764 5677655 777776 7899999999999999999999664
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-14 Score=121.87 Aligned_cols=173 Identities=27% Similarity=0.395 Sum_probs=118.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCC-------CHHHH-hhhCCCCCCCChhHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQ-------DPKEA-HARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~-------~~~~~-~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.++.+|||.|+||||||||++.|++.+. ... + +..|+. +.... ....+.+..++...+...++.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---DESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence 4788999999999999999999999884 221 1 122221 11111 111234455566666777777776
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh-cCCCcH
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPP 253 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i-~~G~~~ 253 (287)
+..+..+.|+.....+....++. ....+.|.++.+++.+ ..+.+.++..|+|+-+.+....|++.|.. ..|...
T Consensus 81 ~~~v~~p~~d~~~~~~~~~~~~~-~~~~~vivEg~~l~~~----~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~ 155 (209)
T PRK05480 81 GKAIEIPVYDYTEHTRSKETIRV-EPKDVIILEGILLLED----ERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSL 155 (209)
T ss_pred CCccccCcccccccccCCCeEEe-CCCCEEEEEeehhcCc----hhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCH
Confidence 66666666765544443333332 2345666777666544 35667788899999999999888887765 468777
Q ss_pred HHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 254 DVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+.+...|.....|.+. ++++.+..||+||++.
T Consensus 156 e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 156 ESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 7777788888888887 8999999999999853
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-15 Score=129.02 Aligned_cols=158 Identities=12% Similarity=0.014 Sum_probs=100.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
.|++.++.+.|.... +++-|+|++++.|...-++|.||||||||+|+|+|-.- ...| +.+.|.+.-.
T Consensus 13 aievsgl~f~y~~~d---P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSD---PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred eEEEeccEEecccCC---ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccccc
Confidence 699999999997643 38899999999999999999999999999999999654 3345 6666653211
Q ss_pred ----Hh------hhCCCCCCCChhHHHHHHHHHhcCCceeeccCC------ccCCCCCCCceeccccceEEE----ecC-
Q 023106 150 ----AH------ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD------HGVGDPVEDDILVGLQHKVVI----VDG- 208 (287)
Q Consensus 150 ----~~------~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~------~~~~~~~~~~LSgGekqRv~I----~~p- 208 (287)
.| ...++......+.-+++.+.|.--......+.+ .....-..+.+|-|||+||.| ..|
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred cCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccce
Confidence 00 000110000000012333322211100000000 011234567789999999998 455
Q ss_pred CEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
.+||||| ++++.+++.++. +++.||-.+-+..
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~ 213 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET 213 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh
Confidence 8999999 566666665553 4799999998887
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-15 Score=157.48 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=121.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
+..-.|+.+....+.....+|+||+=-+.+|...||+|+|||||||||++|+|.... .-.+| +.++|......-.++.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccc
Confidence 444555555442222334599999999999999999999999999999999997541 12356 8899988764433333
Q ss_pred CCCCCChh---HHHHHHHHHhcCCceeeccCCc------------------cCCCCCCC----ceeccccceEEE-----
Q 023106 156 APWTFNPL---LLLNCLKNLRNQGSVYAPSFDH------------------GVGDPVED----DILVGLQHKVVI----- 205 (287)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~------------------~~~~~~~~----~LSgGekqRv~I----- 205 (287)
.+++-|++ ...||.|-|.+.+.+..+.--. ...+..++ -||..||+|+.|
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence 44443332 2389999998876654332110 01233444 499999999988
Q ss_pred ecC-CEEeEec-----------chHHHHHhccCC--eEEEE-cChHHHHH----HHH-----HHHhcCCCcHHHH
Q 023106 206 VDG-NYLFLDG-----------GVWKDVSSMFDE--KWFIE-VDLDTAMQ----RVL-----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p-~lLllDE-----------~~~~~l~~~~~~--~i~vt-Hd~~~~~~----rvi-----gr~i~~G~~~~~~ 256 (287)
.+| .+|+||| .+++.++++.+. .|+.| |.+....- |++ |+.+..|+..+-.
T Consensus 946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 788 9999999 467777777775 46666 66554332 655 7888888876643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-15 Score=146.02 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=101.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC-CCCH----HH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQDP----KE 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~-g~~~----~~ 149 (287)
..|+++||+..-++.. ..|++.+|+|++|+.+-|.|+||||||||+|.|+|+-+ --+| +.+- +.++ +.
T Consensus 391 ~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~~~~~lflpQ~ 464 (604)
T COG4178 391 HGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPADSALLFLPQR 464 (604)
T ss_pred ceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCCCCceEEecCC
Confidence 4799999998886643 37899999999999999999999999999999999987 5556 5544 2211 00
Q ss_pred HhhhCC-------CCC---CCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 150 AHARRG-------APW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 150 ~~~~~~-------~~~---~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
.|...| .|. .+.+..+..++..+.++..... .+..++--..||+|||||+++ ++|++++||
T Consensus 465 PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~r----l~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD 540 (604)
T COG4178 465 PYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAER----LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD 540 (604)
T ss_pred CCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHH----HhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe
Confidence 011111 111 1344444555555544322211 122344667899999999987 999999999
Q ss_pred c-----------chHHHHHhccCCe--EEEEcChHHHH
Q 023106 215 G-----------GVWKDVSSMFDEK--WFIEVDLDTAM 239 (287)
Q Consensus 215 E-----------~~~~~l~~~~~~~--i~vtHd~~~~~ 239 (287)
| .+.+.+++.+.+. |.|.|-.....
T Consensus 541 EATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~ 578 (604)
T COG4178 541 EATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN 578 (604)
T ss_pred cchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH
Confidence 9 3455555544443 46667655543
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-15 Score=127.63 Aligned_cols=183 Identities=17% Similarity=0.266 Sum_probs=122.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCH-----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDP----- 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~----- 147 (287)
|+++.++||+..+......+.+++++|+++.+|||-|++|.+|||||-..|.|+|..+..|. +.. ..+++.++
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 56788899988886554556699999999999999999999999999999999998874321 122 44555443
Q ss_pred HHHhhhC--CCCCCCChhHH---------HHHHHHHhcC---Cc-eeeccCCc----------------cCCCCCCCcee
Q 023106 148 KEAHARR--GAPWTFNPLLL---------LNCLKNLRNQ---GS-VYAPSFDH----------------GVGDPVEDDIL 196 (287)
Q Consensus 148 ~~~~~~~--~~~~~~~~~~~---------~tv~e~l~~~---~~-~~~~~~~~----------------~~~~~~~~~LS 196 (287)
...+... .+.+.||.+.- ...++|+-.- .+ ...+.+.. +.-..++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 2222222 25566665421 2333443221 10 01111111 11246899999
Q ss_pred ccccceEEE-----ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHHH---H--H--HHHhcC
Q 023106 197 VGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQR---V--L--KRHIST 249 (287)
Q Consensus 197 gGekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~r---v--i--gr~i~~ 249 (287)
-||-|+|.| .+|.+||.|| .++.+|..+.. . .++++||+..+.++ + + |+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999998 8999999999 44555544433 2 35999999999882 2 1 888888
Q ss_pred CCcHHHHH
Q 023106 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~~~~~ 257 (287)
+..++++.
T Consensus 241 a~~e~l~~ 248 (330)
T COG4170 241 APSEELVT 248 (330)
T ss_pred cchhHHhc
Confidence 88877754
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-16 Score=133.80 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=83.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~-~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
-|+++|+. .|.+. .+++|... +|++++|+||||||||||+++|++.+.. +..+ ...+ ...... .
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~-~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQE-NLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--Cccccccch-hHHHHhcCCC
Confidence 38899987 66543 35566654 5899999999999999999999965421 2222 2111 000000 0
Q ss_pred hhCCCCCCCChhHH---------HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----e----------c
Q 023106 152 ARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----V----------D 207 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~----------~ 207 (287)
....+...|+.... ++..+..... ......+ ....++.+..||+||+||+.| . +
T Consensus 74 ~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~-~l~~g~l-~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~ 151 (213)
T cd03279 74 DTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV-LLPQGEF-DRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGAR 151 (213)
T ss_pred ccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-hhhhcch-HHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence 00011122221100 0000110000 0000001 112356788999999999988 2 5
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+++|+|| .+.+.+.++.+ .+|++|||++++..
T Consensus 152 ~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 152 LEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 78999999 34445555543 24799999988754
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-15 Score=132.96 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=37.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
|+++|.. .|++.. +++++++ +++||+||||||||||+++|.-.
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHH
Confidence 7788865 887766 8898887 79999999999999999999844
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-16 Score=134.81 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=77.3
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHH----HHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChh--------HHHHH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPL--------LLLNC 168 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~----Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~--------~~~tv 168 (287)
+++.+| +++|+||||||||||+++|. |... |+.| +..+...+........+...|+.. ..+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 455567 99999999999999999996 5444 5555 321111011100011122222221 11588
Q ss_pred HHHHhcCCceeeccCCccCCCCCCCceeccccceE------EE-----ecCCEEeEec----------c--hHHHHHhcc
Q 023106 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV------VI-----VDGNYLFLDG----------G--VWKDVSSMF 225 (287)
Q Consensus 169 ~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv------~I-----~~p~lLllDE----------~--~~~~l~~~~ 225 (287)
++++.+...-. .....++.+..||+||+||+ +| .+|+++++|| . +.+.+.++.
T Consensus 94 ~~~~~~~~~~~----~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~ 169 (204)
T cd03240 94 LENVIFCHQGE----SNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK 169 (204)
T ss_pred hhceeeechHH----HHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 88876531100 01122567889999999974 33 7999999999 2 334444444
Q ss_pred C----CeEEEEcChHHHH
Q 023106 226 D----EKWFIEVDLDTAM 239 (287)
Q Consensus 226 ~----~~i~vtHd~~~~~ 239 (287)
+ .++++||+++...
T Consensus 170 ~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 170 SQKNFQLIVITHDEELVD 187 (204)
T ss_pred hccCCEEEEEEecHHHHh
Confidence 3 2479999988764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-15 Score=145.62 Aligned_cols=163 Identities=20% Similarity=0.264 Sum_probs=120.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
-+++++++++..- .++|+||++.+|||+||.|--|||+|-|++.|.|..+ +.+| +.++|+.+..
T Consensus 261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~ 329 (500)
T COG1129 261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR 329 (500)
T ss_pred CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence 4578999987432 4689999999999999999999999999999999887 8889 9999985422
Q ss_pred HhhhCCCCCCCChhH------HHHHHHHHhcCCcee-e-c-cCCc------------------cCCCCCCCceeccccce
Q 023106 150 AHARRGAPWTFNPLL------LLNCLKNLRNQGSVY-A-P-SFDH------------------GVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~------~~tv~e~l~~~~~~~-~-~-~~~~------------------~~~~~~~~~LSgGekqR 202 (287)
...+.|+.++..+-. .+++.+|+.+..... . . ..+. ...+..+..||||-|||
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 123345554443221 167778876651101 0 0 1111 01246788999999999
Q ss_pred EEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhc
Q 023106 203 VVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 203 v~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~ 248 (287)
|.| .+|++||||| +++..|+++.+. ++++|-+++++.. |++ ||++.
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 999 8999999999 788888888876 3699999999987 665 66654
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=116.20 Aligned_cols=167 Identities=28% Similarity=0.427 Sum_probs=107.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCC----HHHHh----hhCCCCCCCChhHHHHHHHHHhcCCce
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQD----PKEAH----ARRGAPWTFNPLLLLNCLKNLRNQGSV 178 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~----~~~~~----~~~~~~~~~~~~~~~tv~e~l~~~~~~ 178 (287)
++||+||||||||||+++|.+++. ... . +..|+.. ..... ...+.+..++...+.+.+..+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 77 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCE
Confidence 589999999999999999999874 211 1 1222211 00000 112233444444445666666666555
Q ss_pred eeccCCccCCCCCCCceeccccceEEEecCCEEeEecchH---HHHHhccCCeEEEEcChHHHHHHHHHHHh-cCCCcHH
Q 023106 179 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW---KDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPD 254 (287)
Q Consensus 179 ~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~---~~l~~~~~~~i~vtHd~~~~~~rvigr~i-~~G~~~~ 254 (287)
..+.|+.....+... .+.+.++.++|+|.... ..+.+.++..|+|..+.+....|++.|.. .+|...+
T Consensus 78 ~~p~~d~~~~~~~~~--------~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~ 149 (198)
T cd02023 78 EIPVYDFKTHSRLKE--------TVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLE 149 (198)
T ss_pred eccccccccCcccCC--------ceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHH
Confidence 555554433222111 12345677777776211 34566778889999999988888887765 5787776
Q ss_pred HHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 255 VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 255 ~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
.....|.....+++. ++.+.+..||+||++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 150 SVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 666778788888887 88899999999998653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-14 Score=137.46 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=105.9
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-ee--eCC--CCH---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SS--FDS--QDP--- 147 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~--~~g--~~~--- 147 (287)
++|++++|+..-+.. +..+++|+||+|+.|+-+-|.||||||||.|+|+|+|+-+ ..+| +. .+| .++
T Consensus 432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceEEe
Confidence 489999999877552 2347789999999999999999999999999999999987 5677 43 344 211
Q ss_pred HH-Hh-----hhCCC--C--------CCCChhHHHHHHHHHhcCCceee-ccCCccCCCCCCCceeccccceEEE-----
Q 023106 148 KE-AH-----ARRGA--P--------WTFNPLLLLNCLKNLRNQGSVYA-PSFDHGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 148 ~~-~~-----~~~~~--~--------~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~LSgGekqRv~I----- 205 (287)
+. -+ .++.+ | ...++..++..+|++.++--+.. ..++........+.||+||+||+++
T Consensus 507 PQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 507 PQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred cCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 00 00 01111 1 11233345777788777543331 2333333334678899999999988
Q ss_pred ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++|.+.+||| .+.+.++++--..|-|+|-..+...
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 9999999999 2333333333334566787666554
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-13 Score=119.32 Aligned_cols=166 Identities=22% Similarity=0.353 Sum_probs=110.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCccee--eCCCCH--HHHhhhCCCCCC----CChhHHHHHHHHHhcCCceee
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQDP--KEAHARRGAPWT----FNPLLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~--~~g~~~--~~~~~~~~~~~~----~~~~~~~tv~e~l~~~~~~~~ 180 (287)
++||+|+||||||||++.|++++. +..+.. .++... ...+...+.... .+...+...++.+..+..+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~ 77 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEK 77 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCccc
Confidence 589999999999999999999998 776633 332211 111122232111 112223556666776666666
Q ss_pred ccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcHHHHHHH
Q 023106 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWR 259 (287)
Q Consensus 181 ~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~~~~~~~ 259 (287)
|.|+........... -...++.|.++.+++.+ ..+.++++..|+|+.+.+....|.+.|.+. .|...+-+...
T Consensus 78 P~y~~~~~~~~~~~~--i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~ 151 (273)
T cd02026 78 PIYNHVTGLIDPPEL--IKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLAS 151 (273)
T ss_pred ccccccCCCcCCcEE--cCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666654432111110 01246777888777766 467778899999999999988888888876 68777766666
Q ss_pred HHhcCccchh-hhcccCCCCCEEEeC
Q 023106 260 IEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 260 ~~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
+.. ..+.+. |+.|.+..||+||..
T Consensus 152 i~~-r~~~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 152 IEA-RKPDFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred HHh-hchhHHHHhccccccCcEEEEc
Confidence 664 466666 999999999999963
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-14 Score=121.61 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=77.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCC-----CCCCCCh------hH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRG-----APWTFNP------LL 164 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~-----~~~~~~~------~~ 164 (287)
.++++++++.+| +.+|+||||||||||+..|...+. ........|........ .+ +...|+. ..
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~-~~~~~~~i~~~~~~~~~~~~~~ 85 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIK-DGESSAKITVTLKNQGLDANPL 85 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhh-CCCCeEEEEEEEEcCCccCCcC
Confidence 446677788887 779999999999999999976554 32221222322111100 00 0001110 00
Q ss_pred --H--HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHH
Q 023106 165 --L--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKD 220 (287)
Q Consensus 165 --~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~ 220 (287)
. ..+.+.+.. ....++.+..||+|||||+.| .+|+++|||| .+++.
T Consensus 86 ~~~~~~~~~~~l~~----------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~ 155 (198)
T cd03276 86 CVLSQDMARSFLTS----------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDL 155 (198)
T ss_pred CHHHHHHHHHHhcc----------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHH
Confidence 0 111122211 223456889999999999876 4999999999 35555
Q ss_pred HHhccC------CeEEEEcChHHHHH
Q 023106 221 VSSMFD------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 221 l~~~~~------~~i~vtHd~~~~~~ 240 (287)
|.++.. .++++||+++.+..
T Consensus 156 l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 156 LVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHhcCCCcEEEEEECCccccccc
Confidence 655532 13577799999876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-14 Score=127.51 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=38.9
Q ss_pred CCCCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHH
Q 023106 189 DPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
+..+.+||+||+||++| .+|+++|+|| .+++.|.++... .|++||+.+...
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~ 233 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN 233 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 46788999999999988 1569999999 455666665443 479999965554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-14 Score=131.26 Aligned_cols=175 Identities=20% Similarity=0.236 Sum_probs=127.7
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH-----
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP----- 147 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~----- 147 (287)
+-+++++++|+..=... ...+++|||+|..|||+||.|-.|-|-+.|+.+|+|+.+ +.+| |.++|.++
T Consensus 254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence 34589999998765332 237999999999999999999999999999999999998 8889 99999885
Q ss_pred HHHhhhCCCCCCCChhH------HHHHHHHHhcCCceeec----c-----------------CCc--cCCCCCCCceecc
Q 023106 148 KEAHARRGAPWTFNPLL------LLNCLKNLRNQGSVYAP----S-----------------FDH--GVGDPVEDDILVG 198 (287)
Q Consensus 148 ~~~~~~~~~~~~~~~~~------~~tv~e~l~~~~~~~~~----~-----------------~~~--~~~~~~~~~LSgG 198 (287)
...++..|+.+.+.+-. -+++.+|+.+......+ . |+- ......+..||||
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 22344566666665431 17888998775432111 0 110 1123467889999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
.+||+.+ .+|++|++.+ .+.+.|.+..+. +++||-|++++.. |+. |+++...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 9999999 8999999998 344555555554 4699999999998 444 676655555
Q ss_pred HH
Q 023106 253 PD 254 (287)
Q Consensus 253 ~~ 254 (287)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 44
|
|
| >COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-13 Score=118.71 Aligned_cols=177 Identities=27% Similarity=0.407 Sum_probs=146.1
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc--c--eeeCCCC-----H--HHHhhhCCCCCCCChhHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--A--SSFDSQD-----P--KEAHARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~--G--i~~~g~~-----~--~~~~~~~~~~~~~~~~~~~tv~e~ 171 (287)
.-+..-||||.|+.|+||||+.+.+.-++.. +|.+ - +..||.. + .....+.|.|..||...+...+..
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSR-WPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhh-CCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 4556889999999999999999999999863 2222 1 3455542 2 223557889999999999888888
Q ss_pred HhcCCc-eeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCC
Q 023106 172 LRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG 250 (287)
Q Consensus 172 l~~~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G 250 (287)
++.+.. +..|.|++...+..+++.-...+.|+.|.+|+.+|+|++-|..+.+.+|..|+|+-|.+.+.+|.+.|....|
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g 236 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFG 236 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcc
Confidence 887655 7789999999999999998899999999999999999988889999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCccchhhhcccCCCCCE
Q 023106 251 KPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ 280 (287)
.........+..++.++.+........++.
T Consensus 237 ~~a~~~~~~~~~~~~~~~~~~a~~~a~~~w 266 (283)
T COG1072 237 LTAFEDPASYFHNYAPLSEREAIESARAIW 266 (283)
T ss_pred cchhhChhhHhhccCcchHHHHHHhhhhcc
Confidence 998888888888888888755555444443
|
|
| >PLN02348 phosphoribulokinase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=120.69 Aligned_cols=172 Identities=22% Similarity=0.348 Sum_probs=121.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccC--------------CCcc--eeeCCCCHH--HHhhhCCC----CCCCChh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW--------------PQKA--SSFDSQDPK--EAHARRGA----PWTFNPL 163 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~--------------p~~G--i~~~g~~~~--~~~~~~~~----~~~~~~~ 163 (287)
+.-+|||.|++|||||||++.|...+.... ++.. +.+|+.-.. ..+...+. +..++..
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~dfD 127 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFD 127 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccHH
Confidence 456999999999999999999999985210 0111 334554221 11111221 2233444
Q ss_pred HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHH
Q 023106 164 LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVL 243 (287)
Q Consensus 164 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvi 243 (287)
.+.+.+..|..+..+..|.|++......+... . +..+|.|.++.+++.|| .++++++..|+|+.+.+....|.+
T Consensus 128 ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~-I-~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 128 LMYEQVKALKEGKAVEKPIYNHVTGLLDPPEL-I-EPPKILVIEGLHPMYDE----RVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred HHHHHHHHHHCCCcEEeeccccCCCCcCCcEE-c-CCCcEEEEechhhccCc----cccccCcEEEEEECCHHHHHHHHH
Confidence 45777888888888888888876554323222 1 34788889998888884 567788889999999999988888
Q ss_pred HHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEeC
Q 023106 244 KRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 244 gr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
.|+++ +|...+.+...+... .|.+. ||.|.+..||+||+-
T Consensus 202 ~RD~~eRG~S~EeV~~~i~ar-~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 202 QRDMAERGHSLESIKASIEAR-KPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred HhhHhhcCCCHHHHHHHHHhc-CcchhhhcccccccCCEEEEe
Confidence 88886 798777777777654 55555 999999999999973
|
|
| >PRK07429 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-12 Score=116.50 Aligned_cols=170 Identities=22% Similarity=0.357 Sum_probs=114.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCH--HHHhhhCCC----CCCCChhHHHHHHHHHhcCCc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDP--KEAHARRGA----PWTFNPLLLLNCLKNLRNQGS 177 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~--~~~~~~~~~----~~~~~~~~~~tv~e~l~~~~~ 177 (287)
+.-++||.|+||||||||++.|++++. +..+ +..|+... ...+...+. +...+...+...++.+..+..
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG---EELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc---cCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 456999999999999999999999998 7765 34555321 111112222 111222234556666776666
Q ss_pred eeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-CCCcHHHH
Q 023106 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDVA 256 (287)
Q Consensus 178 ~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~G~~~~~~ 256 (287)
+..+.++.......+. .+. +..++.|.++.+.+.+ +.+++++|..|+|+-+.+....|.+.|.+. .|...+.+
T Consensus 84 I~~P~yd~~~g~~~~~-~~i-~p~~iVIvEG~~~l~~----~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei 157 (327)
T PRK07429 84 ILKPIYNHETGTFDPP-EYI-EPNKIVVVEGLHPLYD----ERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQV 157 (327)
T ss_pred eecceeecCCCCcCCc-Eec-CCCcEEEEechhhcCc----HhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHH
Confidence 6666666543322111 111 2356777888776666 467788899999999999998888888876 68777766
Q ss_pred HHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 257 KWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 257 ~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
..++... .+.+. ||.|.+..||+||+..
T Consensus 158 ~~~i~~r-~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 158 LAEIEAR-EPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHHHHHh-CccHhhhhcccccCCCEEEEcC
Confidence 6667654 55555 9999999999999853
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.5e-14 Score=142.87 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCCCCCceeccccceEEE-----ecC---CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDG---NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p---~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
.++.+.+|||||+||+.| .+| .++|||| .+++.|.++.+ .+|++|||++.+.. +++
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 356788999999999988 667 8999999 44555655543 35799999999865 333
Q ss_pred ----------HHHhcCCCcHHHHH
Q 023106 244 ----------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHh
Confidence 46778898888754
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-13 Score=117.65 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=69.7
Q ss_pred ccccccccCCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCcceeeCC-CCHHHHhhhCCCCCCCChhHHHHHHHHHh
Q 023106 97 TSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDS-QDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (287)
Q Consensus 97 l~~vsl~i~~Ge-ivgIiGpNGsGKSTLlk~L~-Gll~~~~p~~Gi~~~g-~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (287)
+-++||++.+|+ +++|+||||||||||+++|+ +.+. +..|..+.. ... .+++..+..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~vp~~~~~-------~~~~~~~~~---------- 76 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLPIPAAEGS-------SLPVFENIF---------- 76 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCCccccccc-------cCcCccEEE----------
Confidence 457899999995 79999999999999999998 3333 344421110 000 011111100
Q ss_pred cCCceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------chHH-HHHhccC---CeEEEEcC
Q 023106 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVWK-DVSSMFD---EKWFIEVD 234 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~~-~l~~~~~---~~i~vtHd 234 (287)
.. .............+|+||+|++.| .+|+++++|| .++. .++.+.+ ..+++||+
T Consensus 77 -----~~-lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 77 -----AD-IGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred -----Ee-cCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 00 000111233567899999999877 6899999999 2222 3344332 25799998
Q ss_pred hHHH
Q 023106 235 LDTA 238 (287)
Q Consensus 235 ~~~~ 238 (287)
.+..
T Consensus 151 ~~l~ 154 (200)
T cd03280 151 GELK 154 (200)
T ss_pred HHHH
Confidence 6543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-13 Score=148.16 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=52.2
Q ss_pred CCCCCCceeccccceEEE----e----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI----V----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I----~----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
.++.+.+|||||+|||.| . +|+++|||| .+++.|.++.+ .+|++||+++.+.. +++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 356789999999999988 2 899999999 44555555543 24799999999833 332
Q ss_pred ----------HHHhcCCCcHHHHH
Q 023106 244 ----------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHHh
Confidence 46678899888753
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-13 Score=140.27 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=36.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAE 126 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~ 126 (287)
+|+++|++. . .|+++||+|+.|++++|+|+||||||||++-
T Consensus 612 ~l~l~~~~~-----~----~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 612 FLTLKGARE-----N----NLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred eEEEEeCcc-----C----CcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 689999862 2 6899999999999999999999999999983
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=122.37 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=105.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCH--------HH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP--------KE 149 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~--------~~ 149 (287)
|.++|.+.+-.++. ++.+.||.|-.|..+||+||||-||||||+.|+..--...|.-.+.+..+.+ ..
T Consensus 265 IKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 265 IKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred ceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 77888887776655 8899999999999999999999999999999987532221333344444421 00
Q ss_pred ---H-----------hhhCC---CCCCCChhHHHHHHHHHhcCCc----------eeeccCCccCCCCCCCceeccccce
Q 023106 150 ---A-----------HARRG---APWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 150 ---~-----------~~~~~---~~~~~~~~~~~tv~e~l~~~~~----------~~~~~~~~~~~~~~~~~LSgGekqR 202 (287)
. ....+ .+...-...+..+++.+..... +..-.|+..+.+++...+|||.+.|
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 0 00011 1111112233455555543211 2234677788899999999999999
Q ss_pred EEE-----ecCCEEeEecc-----------hHHHHHhccCCeEEEEcChHHHHH
Q 023106 203 VVI-----VDGNYLFLDGG-----------VWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 v~I-----~~p~lLllDE~-----------~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
|.| .+|-+|.|||+ +-..|.-..+..++||||..++..
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 998 89999999991 223344444456799999988765
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-13 Score=122.06 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=89.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcc-----cCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNC 168 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~-----~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv 168 (287)
.+++|+||++++|++++|+|+||||||||+++|+|.... .-|++| +.+--..+.... .......|. -.++
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~i-Pge~Ep~f~---~~ti 472 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALI-PGEYEPEFG---EVTI 472 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhcc-CcccccccC---chhH
Confidence 379999999999999999999999999999999998653 137888 443222221110 000111111 1344
Q ss_pred HHHHhcC-Cce-------e-eccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHHHHHh
Q 023106 169 LKNLRNQ-GSV-------Y-APSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWKDVSS 223 (287)
Q Consensus 169 ~e~l~~~-~~~-------~-~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~~l~~ 223 (287)
++.+... ..+ . ...-+.-...+...+||-|||-|+-| ..|++++.|| .+...+.+
T Consensus 473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkise 552 (593)
T COG2401 473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552 (593)
T ss_pred HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence 4444321 010 0 01111223356788999999999987 7789999999 33344444
Q ss_pred ccC----CeEEEEcChHHHHH
Q 023106 224 MFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 224 ~~~----~~i~vtHd~~~~~~ 240 (287)
+.. ..+++||..+....
T Consensus 553 laRe~giTlivvThrpEv~~A 573 (593)
T COG2401 553 LAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHhCCeEEEEecCHHHHhc
Confidence 432 24699999888754
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-13 Score=114.62 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=75.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 175 (287)
+.+|++|++..|++++|+||||+|||||+++|+++.- ...-|..+ +-...-+++++++...
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~--la~~G~~v-----------------pa~~~~l~~~d~I~~~ 78 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI--MAQIGCFV-----------------PAEYATLPIFNRLLSR 78 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH--HHHcCCCc-----------------chhhcCccChhheeEe
Confidence 7899999999999999999999999999999988753 00111110 1011112333443211
Q ss_pred CceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEecc------------hHHHHHhccC---CeEEEEcChH
Q 023106 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDGG------------VWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE~------------~~~~l~~~~~---~~i~vtHd~~ 236 (287)
. -..+...+....+|.|+++...+ .+|.++|+||. .+..++.+.+ .++++||+.+
T Consensus 79 ~------~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 79 L------SNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred c------CCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 1 01112234567788988876544 68999999991 1223333332 3579999999
Q ss_pred HHHH
Q 023106 237 TAMQ 240 (287)
Q Consensus 237 ~~~~ 240 (287)
++..
T Consensus 153 l~~~ 156 (204)
T cd03282 153 IAAI 156 (204)
T ss_pred HHHH
Confidence 8864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=106.99 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=113.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCc--ceeeCCCC--------HHHH--h-----hhCCC--CCCCChhHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQD--------PKEA--H-----ARRGA--PWTFNPLLLLNCL 169 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~--Gi~~~g~~--------~~~~--~-----~~~~~--~~~~~~~~~~tv~ 169 (287)
++||.|++||||||+.+.|...+. ... -.++.+-+ .... . .+... |..++...+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999998875 221 12233321 1100 0 11223 5566666667788
Q ss_pred HHHhcCCceeeccCCccC-----CCCCCCcee----ccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHH
Q 023106 170 KNLRNQGSVYAPSFDHGV-----GDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 170 e~l~~~~~~~~~~~~~~~-----~~~~~~~LS----gGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
..+..+.....+.|+... ..+.+++.. .-+...|.|.+|-+.++. .-...+++++|..|+|..+.++...
T Consensus 78 ~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~-~~~~~lr~~~DlkIfVd~~~dlr~i 156 (277)
T cd02029 78 RTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVV-TEGYNVAQHADLLVGVVPIINLEWI 156 (277)
T ss_pred HHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccc-cccHHHHHhCCeEEEecCcHHHHHH
Confidence 888887777766665421 122222221 112345556555432111 0015788999999999999999888
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEe
Q 023106 241 RVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 241 rvigr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~ 283 (287)
|.+.|++. +|.+.+-+...+..+. |.+. ||.|.+..||++|.
T Consensus 157 rRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 157 QKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 88888875 8999998888888888 7777 99999999999986
|
PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-12 Score=115.55 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCCCceeccccceEEE-----e----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHH
Q 023106 190 PVEDDILVGLQHKVVI-----V----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I-----~----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+.+.+||+||+||+.| . +|+++|+|| .+.+.|.++.+ .+|+|||+.+.+.
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~ 223 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS 223 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh
Confidence 4568999999999988 2 389999999 35556666654 2579999977654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=103.19 Aligned_cols=170 Identities=22% Similarity=0.257 Sum_probs=106.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--HhhhCC---CCCCCChhHHHHHHHHHhcCCceeecc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--AHARRG---APWTFNPLLLLNCLKNLRNQGSVYAPS 182 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~~~~~~---~~~~~~~~~~~tv~e~l~~~~~~~~~~ 182 (287)
++||.|++|||||||.+.|...+....+... +..|+.-... .....+ .+..++...+...+..+..+.....+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 5899999999999999999998851101111 2334332111 011111 222234445566677777777777777
Q ss_pred CCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHH-HHHHHHHHHh-cCCCcHHHHHHHH
Q 023106 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQRVLKRHI-STGKPPDVAKWRI 260 (287)
Q Consensus 183 ~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~-~~~rvigr~i-~~G~~~~~~~~~~ 260 (287)
|+.....+.....-.-+...|.|.++.+++. ..+.++++..|+++.+.++ ...|.+-|++ ++|...+-..+.+
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-----~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~ 155 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALN-----ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW 155 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcC-----HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc
Confidence 7765544333211112345566677766654 4677778889999999998 6667776666 4788777666664
Q ss_pred HhcCccchh-hhcccCCCCCEEEeC
Q 023106 261 EYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 261 ~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
..+.+.+. ++.|.+..||+++++
T Consensus 156 -~~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 156 -PSVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred -ccccCchhhcCCCchhccceeccC
Confidence 34444444 568889999999864
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=123.83 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=93.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcce-eeCC--------CCH-
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS--------QDP- 147 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi-~~~g--------~~~- 147 (287)
|.++|+-..-+... .++..++|.|++|--+-|+||||||||.|+|+|.|+-+ ...|. ++-- +.+
T Consensus 482 I~lenIpvItP~~~---vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~P~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 482 IILENIPVITPAGD---VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSIPRPNNIFYIPQRPY 555 (728)
T ss_pred eEEecCceeccCcc---eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeecCCCcceEeccCCCc
Confidence 66777765554322 26789999999999999999999999999999999987 34442 2111 100
Q ss_pred ---------------HHHhhhCCCCCCCChhHHHHHHHHHhcCCceee-ccCCccCCCCCCCceeccccceEEE-----e
Q 023106 148 ---------------KEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYA-PSFDHGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 148 ---------------~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
.+...++| +.+..+...++.+.+..-+.. ..|+. ....-+.||||||||+.+ +
T Consensus 556 ms~gtlRDQIIYPdS~e~~~~kg----~~d~dL~~iL~~v~L~~i~qr~~g~da--~~dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 556 MSGGTLRDQIIYPDSSEQMKRKG----YTDQDLEAILDIVHLEHILQREGGWDA--VRDWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred cCcCcccceeecCCcHHHHHhcC----CCHHHHHHHHHHhhHHHHHHhccChhh--hccHHhhccchHHHHHHHHHHHhc
Confidence 00011111 122233455555443211111 11221 122446799999999988 9
Q ss_pred cCCEEeEec-------chHHHHHhccCC----eEEEEcChHHHHH
Q 023106 207 DGNYLFLDG-------GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 207 ~p~lLllDE-------~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
.|.+.+||| ++-..+.+..+. .+-|||-..+-.-
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 999999999 344444444332 3588898888766
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-13 Score=114.63 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.5
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++++.+|++++|+||||||||||+++|++..
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 45566689999999999999999999999543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-12 Score=119.55 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=80.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCccee------------eCCCCHHHHhhh--CC---CCCCCChh---
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQDPKEAHAR--RG---APWTFNPL--- 163 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~------------~~g~~~~~~~~~--~~---~~~~~~~~--- 163 (287)
..+|.++||+|+||-||||-+|+|+|.+. |.-|-. +.|..+...... .+ ...-.|.-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 45799999999999999999999999998 765521 122222211110 01 11111110
Q ss_pred -HH--HHHHHHHhcCCcee-----eccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chH
Q 023106 164 -LL--LNCLKNLRNQGSVY-----APSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVW 218 (287)
Q Consensus 164 -~~--~tv~e~l~~~~~~~-----~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~ 218 (287)
.. -++.+-+....... ...+. ....++.+.+|||||.||++| .++++.++|| .+.
T Consensus 174 Pk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 174 PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred HHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH
Confidence 00 12222222110000 00000 123467899999999999998 8999999999 344
Q ss_pred HHHHhccC---CeEEEEcChHHHHH
Q 023106 219 KDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.++++.. .+++|.||+..+.-
T Consensus 254 r~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 254 RVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred HHHHHHhccCCeEEEEechHHHHHH
Confidence 55666664 36799999987754
|
|
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-10 Score=102.01 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=112.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCCH-----HHH------hhhCC----C--CCCCChhHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQDP-----KEA------HARRG----A--PWTFNPLLLL 166 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~~-----~~~------~~~~~----~--~~~~~~~~~~ 166 (287)
+.-++||.|.+||||||+.+.|+..+. ... + .++.+-+. ... ..+.+ . +..++...+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 456999999999999999999998775 221 1 23333211 010 11122 2 4455555566
Q ss_pred HHHHHHhcCCceeeccCCccC-----CCCCCCce----eccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHH
Q 023106 167 NCLKNLRNQGSVYAPSFDHGV-----GDPVEDDI----LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 167 tv~e~l~~~~~~~~~~~~~~~-----~~~~~~~L----SgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~ 237 (287)
+.+..+..+.....+.|.... ..+.++.+ ..-+...|.|.+|-+.++. .-...+++++|..|+|..+.++
T Consensus 81 ~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~-~~~~~lr~~~DlkIfVdp~~dl 159 (290)
T PRK15453 81 QLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVV-TDQVDVAQHVDLLIGVVPIVNL 159 (290)
T ss_pred HHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccc-cccHHHHHhCCeeEeeCCcHhH
Confidence 777777665554444443221 22222221 1112356666666554421 1125688889999999999999
Q ss_pred HHHHHHHHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEe
Q 023106 238 AMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 238 ~~~rvigr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~ 283 (287)
...|.+.|++. +|.+.+-+...+..+. |.+. ||.|.+..+|+.+.
T Consensus 160 r~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 160 EWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 88888888875 8999998888888776 7777 99999999999885
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=107.59 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=39.5
Q ss_pred CCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC-----eEEEEcChHHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE-----KWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~-----~i~vtHd~~~~~~ 240 (287)
....+.+||+||||++.+ .+|+++|+|| .+++.+.+..+. .+++|||+.....
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 456788999999998653 5899999999 455666555432 4799999866654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-12 Score=108.96 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|++|+. |++++|+||||||||||+|+|+|...
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 778887775 69999999999999999999998763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-11 Score=93.29 Aligned_cols=75 Identities=20% Similarity=0.090 Sum_probs=55.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh---CCCCCCCChhHHHHHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR---RGAPWTFNPLLLLNCLK 170 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~---~~~~~~~~~~~~~tv~e 170 (287)
.+|++++|++++|++++|+||||||||||++++. +| +.++|.++...... .-..+.+|.....++.+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~ti~~ 73 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPELGLEIRLRL 73 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechhcchhhHHh
Confidence 3899999999999999999999999999999974 34 78888876443221 11223344433478999
Q ss_pred HHhcCCce
Q 023106 171 NLRNQGSV 178 (287)
Q Consensus 171 ~l~~~~~~ 178 (287)
||.+....
T Consensus 74 Ni~~~~~~ 81 (107)
T cd00820 74 NIFLITKK 81 (107)
T ss_pred hceeeeEE
Confidence 99885443
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-11 Score=101.71 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=66.1
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCcee
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 179 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 179 (287)
++.+.++.++.|+|||||||||+++.+...+- ...+ ... +... ..+.. ..... +.+ +
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~-~~~~-----~~g~~-~~~~~--------~~~---i- 72 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRR-RSGV-----KAGCI-VAAVS--------AEL---I- 72 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhc-cCcc-----cCCCc-ceeeE--------EEE---e-
Confidence 34455667999999999999999999877765 4443 221 0000 00100 00000 000 0
Q ss_pred eccCCccCCCCCCCceeccccceEEE-----e----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChH
Q 023106 180 APSFDHGVGDPVEDDILVGLQHKVVI-----V----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 180 ~~~~~~~~~~~~~~~LSgGekqRv~I-----~----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~ 236 (287)
.....||+||++++.| . +|.++|+|| .+.+.+.++.. ..+++||+.+
T Consensus 73 ----------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 73 ----------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred ----------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 0112399999999887 2 789999999 34444554433 3579999999
Q ss_pred HHHH
Q 023106 237 TAMQ 240 (287)
Q Consensus 237 ~~~~ 240 (287)
+...
T Consensus 143 ~~~~ 146 (162)
T cd03227 143 LAEL 146 (162)
T ss_pred HHHh
Confidence 8764
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-11 Score=125.25 Aligned_cols=164 Identities=17% Similarity=0.290 Sum_probs=108.8
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCCh---hHHHHHH
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNP---LLLLNCL 169 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~---~~~~tv~ 169 (287)
..+|+|++.-+++|+.+-++||.|||||||++.|+|-+....-..| +.++|.+..+...+..+.+..+. ...+||.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3489999999999999999999999999999999998874333345 89999876554332222232222 2236777
Q ss_pred HHHhcCCceeec--cCC--------------------------ccCCCCCCCceeccccceEEE-----ecCCEEeEec-
Q 023106 170 KNLRNQGSVYAP--SFD--------------------------HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG- 215 (287)
Q Consensus 170 e~l~~~~~~~~~--~~~--------------------------~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE- 215 (287)
+.+.+..+...+ +++ ....+....-.|||||+||.+ .++.++.+||
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 777665443322 111 012244566789999999988 7889999999
Q ss_pred ----------chHHHHHhccC---CeEEEE--cChHHH---HHHHH----HHHhcCCCcHHHHH
Q 023106 216 ----------GVWKDVSSMFD---EKWFIE--VDLDTA---MQRVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 ----------~~~~~l~~~~~---~~i~vt--Hd~~~~---~~rvi----gr~i~~G~~~~~~~ 257 (287)
++.+.|+.+.+ ...+|+ ...++. ...++ |+++..|+.+++..
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 45555555544 334443 222222 22443 89999998877653
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-11 Score=122.18 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=55.5
Q ss_pred CCCCCceeccccceEEE--------ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH--HHH-
Q 023106 189 DPVEDDILVGLQHKVVI--------VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I--------~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~--rvi- 243 (287)
-+...+|||||-|||-| ...-+.+||| .+++.|..+.+. +|+|.|+++.+.. +++
T Consensus 817 GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IID 896 (935)
T COG0178 817 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIID 896 (935)
T ss_pred CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEE
Confidence 35678899999999988 3458999999 455555555554 5799999999987 776
Q ss_pred ---------HHHhcCCCcHHHHH
Q 023106 244 ---------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~~ 257 (287)
|.+++.|+|++++.
T Consensus 897 LGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 897 LGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred cCCCCCCCCceEEEecCHHHHHh
Confidence 68999999999975
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-11 Score=129.02 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=54.2
Q ss_pred CCCCCceeccccceEEE--------ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH-
Q 023106 189 DPVEDDILVGLQHKVVI--------VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I--------~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi- 243 (287)
.+...+|||||.||+-| ..+.+++||| .++..+.++.+ .+|+|.||++.+.. +++
T Consensus 1694 Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iid 1773 (1809)
T PRK00635 1694 GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIE 1773 (1809)
T ss_pred CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEE
Confidence 45778899999999987 2368999999 34445444444 46899999999998 665
Q ss_pred ---------HHHhcCCCcHHHHH
Q 023106 244 ---------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~~ 257 (287)
|++++.|+|+++..
T Consensus 1774 lgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1774 MGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCcccCCCEEEEEeCHHHHhh
Confidence 68999999999964
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-10 Score=98.10 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=34.3
Q ss_pred eeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHH
Q 023106 195 ILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAM 239 (287)
Q Consensus 195 LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~ 239 (287)
||+||+||+.| .+|+++++|| .+.+.+.++... .|++||+.+.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 99999999877 2799999999 344555554333 579999988764
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-10 Score=103.06 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=34.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.-++|+||||||||||+++|+|++. |.+| +.++|+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe
Confidence 5789999999999999999999999 9999 88999875
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-11 Score=103.90 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=41.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCcceeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G-ll~~~~p~~Gi~~~g~~ 146 (287)
+.+|++|.+.+|++++|+||||+|||||+++|++ .+. +..|..+.+..
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a~~ 68 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPASS 68 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEcCc
Confidence 7899999999999999999999999999999999 555 77886655544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-10 Score=100.95 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=32.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.+|+++++.+ ++++|+||||+|||||++.|++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 77899999887 999999999999999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=89.78 Aligned_cols=172 Identities=26% Similarity=0.380 Sum_probs=94.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--e-e--eCCCCHHH-HhhhCC--CC-----CCCChhHHHH-HHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--S-S--FDSQDPKE-AHARRG--AP-----WTFNPLLLLN-CLK 170 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i-~--~~g~~~~~-~~~~~~--~~-----~~~~~~~~~t-v~e 170 (287)
...-+|||.|++|||||||.+.|+..++ . .| + . .|+.-... .+...+ .+ ..++...+.. +++
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~---~-~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~ 95 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK---K-RGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLD 95 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH---H-cCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHh
Confidence 3567999999999999999999999986 3 23 2 2 34432211 111111 11 1233322221 122
Q ss_pred HHhcCC--ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh-
Q 023106 171 NLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI- 247 (287)
Q Consensus 171 ~l~~~~--~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i- 247 (287)
.+.... .+..+.++...........---+...+.|.++.+++- ..+...++..|+|+.+.+....|+..|..
T Consensus 96 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~ 170 (223)
T PRK06696 96 PLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PELRDLWDYKIFLDTDFEVSRRRGAKRDTE 170 (223)
T ss_pred hccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhHHhhCCEEEEEECCHHHHHHHHHHhhhh
Confidence 121111 1222233332221110000000123355556655431 35666778889999999999998887765
Q ss_pred cCCCcHHHHHHHHHhcCccchh-hhccc--CCCCCEEEeCCC
Q 023106 248 STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 286 (287)
Q Consensus 248 ~~G~~~~~~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~~ 286 (287)
..|...+.... +...+.+.+. |+.+. +..||+||++.+
T Consensus 171 ~~g~~~~~~~~-~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 171 AFGSYEEAEKM-YLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred hhCCchHHHHH-HHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 36765555444 4456778877 55444 788999999865
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-10 Score=101.27 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=27.6
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
++++.+++.+| +.+|+|||||||||++..|.=++
T Consensus 12 ~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~~~ 45 (276)
T cd03241 12 IEELELDFEEG-LTVLTGETGAGKSILLDALSLLL 45 (276)
T ss_pred eeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45666677666 78999999999999999987554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-10 Score=117.02 Aligned_cols=114 Identities=8% Similarity=0.117 Sum_probs=68.9
Q ss_pred cccccCCC-eEEEEECCCCCCHHHHHHHHHHH-hcccCCCcceee-CCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCC
Q 023106 100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSF-DSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 176 (287)
Q Consensus 100 vsl~i~~G-eivgIiGpNGsGKSTLlk~L~Gl-l~~~~p~~Gi~~-~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 176 (287)
+|+.+..+ .+++|+||||+|||||+|+|+|. +. +..|..+ .+.... +++..+....+..-++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-------~~~~d~i~~~i~~~~s----- 378 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-------IPYFEEIFADIGDEQS----- 378 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-------ccchhheeeecChHhH-----
Confidence 68888877 99999999999999999999998 44 5566221 111100 1110000000000011
Q ss_pred ceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------ch-HHHHHhccC---CeEEEEcChHH
Q 023106 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GV-WKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~-~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.......+|+++++.+.| .++.++|+|| .+ +..+..+.+ .++++||+.++
T Consensus 379 -----------i~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 379 -----------IEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred -----------HhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 112456688999988766 4889999999 12 222333322 25789999887
Q ss_pred HH
Q 023106 238 AM 239 (287)
Q Consensus 238 ~~ 239 (287)
..
T Consensus 448 ~~ 449 (771)
T TIGR01069 448 KA 449 (771)
T ss_pred HH
Confidence 54
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=91.89 Aligned_cols=153 Identities=22% Similarity=0.211 Sum_probs=93.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCC-----HHH---HhhhCCCCCCCChhHHHHHHHHHhcCCceee
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD-----PKE---AHARRGAPWTFNPLLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~-----~~~---~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 180 (287)
+|||.|++|||||||.+.|+..+. ...-+..|+.- ... ...+.+.+..++...+...+..+..+.....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~ 77 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPK 77 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccC
Confidence 589999999999999999999874 11113333321 111 1234556777887777888888877654322
Q ss_pred ccCCccCCCCC-------------CCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh
Q 023106 181 PSFDHGVGDPV-------------EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 181 ~~~~~~~~~~~-------------~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i 247 (287)
+.++....... ..........++.|.++.+++.|+ .+.+++|..||+.-|.+.+.+|.+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 78 FLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred cccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCceeEecCCHHHHHHHHHHcCC
Confidence 22222111100 011122345668889998887773 5778999999999999999998886542
Q ss_pred cC--C-CcHHHHHHHHHhcCccchh
Q 023106 248 ST--G-KPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 248 ~~--G-~~~~~~~~~~~~~~~~~~~ 269 (287)
.. | -..+ -..++...|+|++.
T Consensus 154 ~~~~~~~w~D-p~~yf~~~v~p~y~ 177 (187)
T cd02024 154 YVTLEGFWPD-PPGYFDGHVWPMYL 177 (187)
T ss_pred ccccCcccCC-CCcccccccchhHH
Confidence 21 2 1111 12445567777764
|
This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-10 Score=108.89 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=42.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~ 147 (287)
+|++||+++.+|++++|+|||||||||||+ +|++. |++| +.++|.++
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATHS 69 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEEC
Confidence 899999999999999999999999999999 67777 7776 88998753
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-10 Score=98.86 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=32.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+.+|+++++.++++++|.||||+|||||+++++-
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999999999999999873
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-08 Score=85.15 Aligned_cols=165 Identities=18% Similarity=0.257 Sum_probs=95.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccC-CCcceeeCCCCHHH-HhhhCCCCC-------CCChhHHH-HHHHHHhcC
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKASSFDSQDPKE-AHARRGAPW-------TFNPLLLL-NCLKNLRNQ 175 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~-p~~Gi~~~g~~~~~-~~~~~~~~~-------~~~~~~~~-tv~e~l~~~ 175 (287)
..-+|||-|++|||||||.+.|...+.... +...+..++.-... .+...+... .++...+. .++..+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 446999999999999999999999886210 11124445432211 111222211 12222222 345666666
Q ss_pred CceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHH
Q 023106 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDV 255 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~ 255 (287)
..+..|.++............. ....+.|.++.+++ . ..+.++++..|+|+.+.+...+|++.|. |.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~-~~~~vvIvEG~~l~-~----~~~~~~~d~~v~V~~~~~~~~~R~~~r~---~~---- 162 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQI-PIVGVIVIEGVFLQ-R----KEWRDFFHYMVYLDCPRETRFLRESEET---QK---- 162 (193)
T ss_pred CeEEEeeeccccccccccceec-CCCCEEEEEehhhh-h----hhHHhhceEEEEEECCHHHHHHHHhccc---Hh----
Confidence 6666777776543322111111 12357777777642 1 4466788889999999999988876432 22
Q ss_pred HHHHHHhcCccchh-hhcc--cCCCCCEEEe
Q 023106 256 AKWRIEYNDRPNAE-LIMK--SKKNADLVIK 283 (287)
Q Consensus 256 ~~~~~~~~~~~~~~-~i~~--~~~~ad~ii~ 283 (287)
....+..++.+.+. |+.. .+..||+||+
T Consensus 163 ~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 163 NLSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 22334445566766 4332 3888999984
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-09 Score=94.84 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=26.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+-+|+++.=..+.+++|+||||+|||||+|.|+.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 4456665533348999999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-09 Score=92.29 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=57.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-HHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCccC
Q 023106 109 IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~-Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 187 (287)
++.|.||||+|||||+|.++ ..+- ...|..+...... ++.. +.+ +.... ....
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l---a~~G~~v~a~~~~-------~~~~----------d~i-----l~~~~-~~d~ 54 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM---AQIGSFVPAESAE-------LPVF----------DRI-----FTRIG-ASDS 54 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH---HHhCCCeeehheE-------eccc----------ceE-----EEEeC-CCCc
Confidence 36799999999999999998 3333 3444222111100 1110 000 00000 1112
Q ss_pred CCCCCCceeccccceEEE----ecCCEEeEec-----------chH-HHHHhccC----CeEEEEcChHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVW-KDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~-~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.......+|+|+++...+ .+|.++|+|| .+. ..++.+.+ ..+++||+.+...
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 55 LAQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred hhccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 234567788888876544 4899999999 122 22233322 2479999996543
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-08 Score=94.66 Aligned_cols=170 Identities=20% Similarity=0.176 Sum_probs=100.8
Q ss_pred ccccccccc---CCCe-----EEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHH-------------
Q 023106 96 PTSALASNV---NVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEA------------- 150 (287)
Q Consensus 96 ~l~~vsl~i---~~Ge-----ivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~------------- 150 (287)
+++++++.+ .+|+ ++||+|++|||||||++.|.+++. +. .| +.+||..+...
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~ 157 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---ATGRRAASLSIDDFYLTAADQAKLAEANPGNA 157 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---ccCCceeEEEECCcccchhhHHHHHhhCcchh
Confidence 677888887 4444 599999999999999999999998 54 35 67888753211
Q ss_pred -hhhCCCCCCCChhHHHHHHHHHh----cCCceeeccCCccCC----CCCCCc--eeccccceEEEecCCEEeEec----
Q 023106 151 -HARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHGVG----DPVEDD--ILVGLQHKVVIVDGNYLFLDG---- 215 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~~tv~e~l~----~~~~~~~~~~~~~~~----~~~~~~--LSgGekqRv~I~~p~lLllDE---- 215 (287)
...+|.+..++...+...++.+. .+..+..|.|++... ++.+.+ -..-....|.|.++.++-+-.
T Consensus 158 Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~ 237 (347)
T PLN02796 158 LLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPD 237 (347)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChH
Confidence 11234556666666677777776 455677889987653 343321 111134577777776665521
Q ss_pred ----------chH-------HHHHhccCCeE-EEEcChHHHHHHHH---HHHhc---CCCcHHHHHHHHHhcCccchh
Q 023106 216 ----------GVW-------KDVSSMFDEKW-FIEVDLDTAMQRVL---KRHIS---TGKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 216 ----------~~~-------~~l~~~~~~~i-~vtHd~~~~~~rvi---gr~i~---~G~~~~~~~~~~~~~~~~~~~ 269 (287)
.+- ..+...++..| +-.-|.+.+.++.. .+..+ .|-+++.+.... .+..|.++
T Consensus 238 ~l~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV-~~~mP~y~ 314 (347)
T PLN02796 238 AVKAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFV-SRYMPAYK 314 (347)
T ss_pred HhhccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHHHH
Confidence 011 11122233334 44477888887444 22222 244555555544 35566665
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-09 Score=99.80 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=62.4
Q ss_pred ccccccccCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCHHHHhhhCCCCCCCChhHHHHHH
Q 023106 97 TSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDPKEAHARRGAPWTFNPLLLLNCL 169 (287)
Q Consensus 97 l~~vsl~i~~G-----eivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~ 169 (287)
+.++.|.|..| +++..+|.||.|||||+++++|.++ |+.| +-...... ..+.+.--++...-....
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p~lnVSy----kpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIPVLNVSY----KPQKISPKREGTVRQLLH 424 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcccccceec----cccccCccccchHHHHHH
Confidence 34555555554 6899999999999999999999999 8877 22222110 001110000000000000
Q ss_pred HHHhcC-------CceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 170 KNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 170 e~l~~~-------~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
+.+... .....|..-....+..+..|||||+|||++ ..+++.+.||
T Consensus 425 ~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 425 TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 111000 000001111123355778899999999988 6789999999
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-08 Score=93.70 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=77.4
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCc
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 177 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 177 (287)
=+++.+..|..++|+||+|||||||+++|+++++ +..+ +.+.. ..+.... .+ ..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~ied--~~El~~~--~~------------------~~ 190 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITIED--TREIFLP--HP------------------NY 190 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEEcC--ccccCCC--CC------------------CE
Confidence 3678899999999999999999999999999998 8777 44432 1111000 00 00
Q ss_pred eeeccCCccCCCCCCCceeccccceEEE-ecCCEEeEec----chHHHHHhccCC--e-EEEEcChHHHHH--HHH----
Q 023106 178 VYAPSFDHGVGDPVEDDILVGLQHKVVI-VDGNYLFLDG----GVWKDVSSMFDE--K-WFIEVDLDTAMQ--RVL---- 243 (287)
Q Consensus 178 ~~~~~~~~~~~~~~~~~LSgGekqRv~I-~~p~lLllDE----~~~~~l~~~~~~--~-i~vtHd~~~~~~--rvi---- 243 (287)
.... +..... .....+..+--+.++ .+|+++++|| +.+..+..+... + +.+.|..+.... |++
T Consensus 191 ~~l~-~~~~~~--~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~ 267 (308)
T TIGR02788 191 VHLF-YSKGGQ--GLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVK 267 (308)
T ss_pred EEEE-ecCCCC--CcCccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhh
Confidence 0000 000000 000111111111123 7999999999 555555554432 3 677799885554 555
Q ss_pred HHHhcCCCcHHHHHHHH
Q 023106 244 KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 244 gr~i~~G~~~~~~~~~~ 260 (287)
++....|.+.+.+....
T Consensus 268 ~~~~~~g~~~~~~~~~i 284 (308)
T TIGR02788 268 SSQAGLGLDFAYIVKLV 284 (308)
T ss_pred ccccccCCCHHHHHHHH
Confidence 34555688888875443
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=77.43 Aligned_cols=151 Identities=25% Similarity=0.369 Sum_probs=78.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHH----H--HhhhCCCCCCCChhHHHHHHHHHhcCCcee
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPK----E--AHARRGAPWTFNPLLLLNCLKNLRNQGSVY 179 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~----~--~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 179 (287)
++.+|+|.|++|||||||.+.|+..+. ...-+..++.... . .....+. .+....+....+.+...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~---~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~---- 72 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK---NSKALYFDRYDFDNCPEDICKWIDKGA--NYSEWVLTPLIKDIQEL---- 72 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC---CCceEEECCEEcccCchhhhhhhhccC--ChhhhhhHHHHHHHHHH----
Confidence 467999999999999999999999875 2211333332110 0 0001111 11111110111111100
Q ss_pred eccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHH--H
Q 023106 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA--K 257 (287)
Q Consensus 180 ~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~--~ 257 (287)
++. ....+.|.+..+..+ ...+.+.++..|++..+.+....|++.|.....+.+++. .
T Consensus 73 ---------------~~~-~~~~~vivd~~~~~~----~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 132 (182)
T PRK08233 73 ---------------IAK-SNVDYIIVDYPFAYL----NSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDL 132 (182)
T ss_pred ---------------HcC-CCceEEEEeeehhhc----cHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHH
Confidence 000 011333444333322 245666778889999999999888876654332222221 2
Q ss_pred HHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 258 WRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 258 ~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
+.+...++|.+. ++.+.+..++++|++.
T Consensus 133 ~~~~~~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 133 KHYLNYARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHHHHHHHHhhcCccCCeEEEcCC
Confidence 334445566665 5666667889999753
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-09 Score=94.48 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=33.3
Q ss_pred CceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 193 DDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
..||||||..++| .+.++++||| .+...|.++.+ +.|++||+......
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4899999999877 4678999999 56667777663 46899999877653
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PLN03046 D-glycerate 3-kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-07 Score=85.97 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=93.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHH--HH-h-----------hhCCCCCCCChhHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPK--EA-H-----------ARRGAPWTFNPLLLLN 167 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~--~~-~-----------~~~~~~~~~~~~~~~t 167 (287)
+.-+|||.|++|||||||++.|.+++. +. .| +.+||.... .. . ..+|.+..++......
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e 287 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVE 287 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---ccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHH
Confidence 458999999999999999999999997 54 45 678886531 11 0 1123455666655555
Q ss_pred HHHHH----hcCCceeeccCCccCC----CCCCCce--eccccceEEEecCCEEeEec-----------c---hHHHHHh
Q 023106 168 CLKNL----RNQGSVYAPSFDHGVG----DPVEDDI--LVGLQHKVVIVDGNYLFLDG-----------G---VWKDVSS 223 (287)
Q Consensus 168 v~e~l----~~~~~~~~~~~~~~~~----~~~~~~L--SgGekqRv~I~~p~lLllDE-----------~---~~~~l~~ 223 (287)
+++.+ ..+..+..|.|++... ++.+.+- ..-....|.|.||.++.+-. + +-+.|..
T Consensus 288 ~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~ 367 (460)
T PLN03046 288 TLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEA 367 (460)
T ss_pred HHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHH
Confidence 56655 3566677888887653 3433211 11134578887877766632 0 1111222
Q ss_pred -------ccCCeE-EEEcChHHHHHHHH---HHHhcC---CCcHHHHHHHHHhcCccchh
Q 023106 224 -------MFDEKW-FIEVDLDTAMQRVL---KRHIST---GKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 224 -------~~~~~i-~vtHd~~~~~~rvi---gr~i~~---G~~~~~~~~~~~~~~~~~~~ 269 (287)
.++..| +-..|.+.+.++.. .+.... |-.++.+.... ..++|.++
T Consensus 368 Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV-~~YmPaY~ 426 (460)
T PLN03046 368 YYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFV-SRYLPAYK 426 (460)
T ss_pred HHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHhhhHHH
Confidence 222223 44577788887554 222222 44555555544 46677776
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-08 Score=84.54 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=38.4
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
.+-+.+.+.+|+.++|+||||||||||++.|+|+++ ++.| +.+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECC
Confidence 344567788999999999999999999999999998 8888 55544
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-08 Score=96.27 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=53.6
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+.|+++.||+.. +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+| +.+.+..+
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecchh
Confidence 458888888766 8899999999999999999999999999999999999 9988 66666544
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-07 Score=83.26 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=33.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+-+|++|++.+|++++|.||||+|||||++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 779999999999999999999999999999998864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-08 Score=98.77 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=65.5
Q ss_pred ccccC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCcee
Q 023106 101 ASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 179 (287)
Q Consensus 101 sl~i~-~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 179 (287)
++.+. .+.++.|.|||++||||+||.++...- ....|..+.-.. ..-+.+++++ .
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~~--maq~G~~vpa~~----------------~~~i~~~~~i------~ 375 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL--MAKSGLPIPANE----------------PSEIPVFKEI------F 375 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHHH--HHHhCCCcccCC----------------CccccccceE------E
Confidence 34443 356899999999999999999965421 133442211100 0001111111 1
Q ss_pred eccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------chHH-HHHhccC---CeEEEEcChHHHHH
Q 023106 180 APSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVWK-DVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 180 ~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~~-~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
...-+..........+|++|++++.| .+|.++|+|| .+.. .+..+.+ .++++||+.++...
T Consensus 376 ~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 376 ADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred EecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 11111112234677899999999877 4899999999 1222 2222222 25799999887764
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-08 Score=92.03 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=54.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC---CCCH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD---SQDP 147 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~---g~~~ 147 (287)
.+.++.+++++.|... +.+++.++ .|.+|++++|+|+||||||||+++|+++.. |+.| +.+. |.++
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccH
Confidence 3468999999999643 23888885 999999999999999999999999999998 8888 5554 4554
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.8e-08 Score=80.77 Aligned_cols=24 Identities=38% Similarity=0.866 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++|+|+||||||||++.|++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999876
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.2e-07 Score=80.02 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=39.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHH-HHHHHHHhcccCCCcc-eeeCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTL-lk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+.++++.+.+++ -+++|+++.|+|+|||||||| ++++.+.++ +... +++...
T Consensus 8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e 61 (230)
T PRK08533 8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ 61 (230)
T ss_pred EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC
Confidence 556777776654 257899999999999999999 689998876 5444 455443
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.7e-07 Score=63.46 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.4
Q ss_pred ccccccccCC-CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~~-GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++.++++.+ |.++.|.|+||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445566765 56999999999999999999988776
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-07 Score=74.59 Aligned_cols=127 Identities=19% Similarity=0.198 Sum_probs=70.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHH----HhhhCCCCCCCCh-hHHHHHHHHHhcCCceee
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKE----AHARRGAPWTFNP-LLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~----~~~~~~~~~~~~~-~~~~tv~e~l~~~~~~~~ 180 (287)
+|++++|+|+||||||||+++|++++. + +.++|.++.. .....++++..+. ....+++.++.+.. ..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~---~---~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~- 73 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS---A---KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL-YK- 73 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC---C---EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH-Hh-
Confidence 589999999999999999999999987 5 4666665321 1123455444432 12355656655321 00
Q ss_pred ccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCC--eEEEEcChHHHHHHHHHHHhcCCCcHHHHHH
Q 023106 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--KWFIEVDLDTAMQRVLKRHISTGKPPDVAKW 258 (287)
Q Consensus 181 ~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~--~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~ 258 (287)
.. +. ..|.-. .+.....+.+++.... .|++.++.+.+..|+..|-- ...+.+++..
T Consensus 74 ----------~~-------~~-g~iv~s---~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~-~~~~~~vl~~ 131 (176)
T PRK09825 74 ----------KN-------ET-GFIVCS---SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAG-HFMPPDLLQS 131 (176)
T ss_pred ----------cC-------CC-EEEEEE---ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccC-CCCCHHHHHH
Confidence 00 00 012111 1222222333333332 36888999998888875532 2235666666
Q ss_pred HHHh
Q 023106 259 RIEY 262 (287)
Q Consensus 259 ~~~~ 262 (287)
++..
T Consensus 132 Q~~~ 135 (176)
T PRK09825 132 QFDA 135 (176)
T ss_pred HHHH
Confidence 5543
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-07 Score=87.24 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=76.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHH-----------hh-h--CC---CCCCCC----hh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEA-----------HA-R--RG---APWTFN----PL 163 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~-----------~~-~--~~---~~~~~~----~~ 163 (287)
.+|++.|++|-||-||||-+++++|-++ |.-|-+.++.+..+. ++ + .+ ....+| .+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 4799999999999999999999999998 766533322221110 00 0 00 000111 01
Q ss_pred HH--HHHHHHHhcCCceeec------cCCccCCCCCCCceeccccceEEE-----ecCCEEeEec-----------chHH
Q 023106 164 LL--LNCLKNLRNQGSVYAP------SFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-----------GVWK 219 (287)
Q Consensus 164 ~~--~tv~e~l~~~~~~~~~------~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-----------~~~~ 219 (287)
.. .++-..+..-...... .--....++.+.+|||||-||.+| +..++.++|| ....
T Consensus 175 r~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~ 254 (592)
T KOG0063|consen 175 RAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI 254 (592)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH
Confidence 00 1111111110000000 000113467889999999999777 8899999999 1222
Q ss_pred HHHhccC---CeEEEEcChHHHHH
Q 023106 220 DVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 220 ~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.|+.+.. .+|+|.||+.....
T Consensus 255 ~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 255 TIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred HHHHhhCCCCeEEEEEeechHHHh
Confidence 3344433 36899999998865
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-07 Score=88.58 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=53.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
+.++.+.++..|... +.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.| +.+.|..
T Consensus 128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECCC
Confidence 357888888888432 2389999 9999999999999999999999999999998 8888 5566653
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-07 Score=88.04 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=38.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+.. ++.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~ 184 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVV 184 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeE
Confidence 3489999 9999999999999999999999999999988 7754
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-07 Score=87.40 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=42.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.| +.+.|+
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge 194 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE 194 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence 89999 9999999999999999999999999999998 8889 666554
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-06 Score=77.39 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=29.3
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+.+|++++|+||+|+|||||++.|.+.+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 5788999999999999999999999999887
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.8e-07 Score=86.13 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=44.6
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc---c-eeeCCCCHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE 149 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~---G-i~~~g~~~~~ 149 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|+++.. ++. | +-..|.++..
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~e 194 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVTE 194 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHHH
Confidence 389999 9999999999999999999999999999887 665 5 6777877643
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-07 Score=83.72 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=40.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.| +...|
T Consensus 59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG 104 (326)
T cd01136 59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG 104 (326)
T ss_pred EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence 89999 9999999999999999999999999999998 8877 44444
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.7e-07 Score=84.58 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEEecCchhhhhhhhhcccccc-----------ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~-----------~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-++++||++.|.+.. .+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 599999999997532 2675 9999999999999999999999999999999876
|
Members of this family differ in the specificity of RNA binding. |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-05 Score=65.47 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=38.7
Q ss_pred HHHHhccC-----CeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchh-hh--cccCCCCCEEEe
Q 023106 219 KDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LI--MKSKKNADLVIK 283 (287)
Q Consensus 219 ~~l~~~~~-----~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~-~i--~~~~~~ad~ii~ 283 (287)
..++++++ ..|+++-+.+....|++.|. |. ...++ ..+.+.++ |+ .+.+.+||+++.
T Consensus 107 ~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd---~~----~~~~~-~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 107 AANVALASLLGEVLTVWLDGPEALRKERALARD---PD----YAPHW-EMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC---ch----hhHHH-HHHHHHHHHHHhcCCChhccEEEec
Confidence 34555566 46799999999999988775 32 22222 45677777 44 444889999875
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=9e-07 Score=84.63 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=43.2
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++.| +.+.|+.
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGer 200 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGER 200 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccC
Confidence 389999 9999999999999999999999999999988 8888 5666754
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.7e-07 Score=84.30 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=41.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++ |.+.+|++++|+|+||+|||||+++|++... ++.| +...|.
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 181 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIGE 181 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEcc
Confidence 89999 9999999999999999999999999999998 8888 445433
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.8e-07 Score=74.97 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|++++|+||||||||||+++|++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999876
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-06 Score=83.82 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=41.2
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.+ +...|.
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 199 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIGE 199 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEee
Confidence 389999 9999999999999999999999999999988 8877 444444
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-06 Score=82.77 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=40.1
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.+++.+ +.+.+|++++|+|+||+|||||+++|++..+ ++.| +...|.
T Consensus 146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liGe 193 (434)
T PRK05922 146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIGE 193 (434)
T ss_pred eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeCC
Confidence 377765 9999999999999999999999999999988 8888 434443
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=83.94 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=33.4
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++.+.+|.+++++||||+||||++..|++.+.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 5667777888999999999999999999999999886
|
|
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-06 Score=82.15 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=43.6
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++.| +...|+..
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ger~ 175 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGERG 175 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccch
Confidence 389999 9999999999999999999999999999988 8888 55677653
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.6e-06 Score=82.58 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=41.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
+++ .+|.+.+|++++|+|+||+|||||+++|+++.. |+.| +...|+.
T Consensus 130 aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer 177 (418)
T TIGR03498 130 VID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGER 177 (418)
T ss_pred EEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeee
Confidence 665 699999999999999999999999999999998 8888 5556653
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-06 Score=82.96 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=48.7
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+++--+|+.. +++.+++.+..|..+.|+||||+|||||++.|.++++ |.+| +.+.+..+
T Consensus 190 d~~dv~Gq~~----~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp---~~~~~~~le~~~i 249 (499)
T TIGR00368 190 DLKDIKGQQH----AKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP---PLTNEEAIETARI 249 (499)
T ss_pred CHHHhcCcHH----HHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC---CCCCcEEEecccc
Confidence 3444455555 7889999999999999999999999999999999999 8888 66665543
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >PRK14731 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-06 Score=75.00 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=44.3
Q ss_pred eEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEE
Q 023106 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 Rv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~i 281 (287)
.+.+.+..+|+ . ..+...++.+++|+.+.+....|+..|. +...+.+..+.. ...+....+ ..||++
T Consensus 116 ~vvv~e~pLL~-e----~~~~~~~d~ii~V~a~~e~~~~Rl~~R~---~~s~e~~~~Ri~-~q~~~~~~~----~~ad~v 182 (208)
T PRK14731 116 RILVKEAAILF-E----SGGDAGLDFIVVVAADTELRLERAVQRG---MGSREEIRRRIA-AQWPQEKLI----ERADYV 182 (208)
T ss_pred CEEEEEeeeee-e----cCchhcCCeEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHH-HcCChHHHH----HhCCEE
Confidence 45666666443 2 2234456778899999999988887652 335555555554 344444443 358999
Q ss_pred EeCC
Q 023106 282 IKSI 285 (287)
Q Consensus 282 i~~~ 285 (287)
|.|.
T Consensus 183 I~N~ 186 (208)
T PRK14731 183 IYNN 186 (208)
T ss_pred EECC
Confidence 8864
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-06 Score=73.18 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.8e-06 Score=70.63 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999876
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-06 Score=81.69 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=42.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc---c-eeeCCCCHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE 149 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~---G-i~~~g~~~~~ 149 (287)
+++.+ |.+.+|++++|+|+||+|||||+++|+++.. ++. | +-+.|.++..
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~ev~e 218 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGREVKD 218 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeEHHH
Confidence 66555 9999999999999999999999999999988 774 5 7777877644
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.08 E-value=3e-06 Score=80.57 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=48.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
++-..++..|.. ...+++.+ |.+.+|++++|+|+||+|||||+++|++... ++.+ +...|+.
T Consensus 112 ~~R~~~~~~~~t---Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDV---GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeee---eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEecC
Confidence 444555655642 12388888 9999999999999999999999999999988 8877 4455554
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=68.02 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|+||+||||||+++.|++.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999988886
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.8e-06 Score=81.04 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=51.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.++.+.+++.|... ..+++.+ |.+.+|++++|+|+||+|||||+++|++... ++.| +.+.|+.
T Consensus 130 ~~~r~~i~~~l~TG---iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCC---CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCC
Confidence 46677788777532 2378774 9999999999999999999999999999998 8888 5566654
|
|
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.1e-06 Score=71.58 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=29.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++++++++.+| +.+|+||||+||||++.+|.-.+.
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 346677777676 999999999999999999988886
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.8e-05 Score=61.23 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred cCCeEEEEcChHHHHHHHHHHHhc--CCCcHHHHHHHHHhcCccchh-hhcccC-CCCCEEEeCC
Q 023106 225 FDEKWFIEVDLDTAMQRVLKRHIS--TGKPPDVAKWRIEYNDRPNAE-LIMKSK-KNADLVIKSI 285 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rvigr~i~--~G~~~~~~~~~~~~~~~~~~~-~i~~~~-~~ad~ii~~~ 285 (287)
.+..|+++.+++....|++.|... .|.+.+-+...+...+.+... |+.++. ...|++|+++
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeCc
Confidence 445689999999988888876654 366777777778888888755 777764 5668999863
|
|
| >COG4240 Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00014 Score=63.38 Aligned_cols=84 Identities=37% Similarity=0.481 Sum_probs=57.7
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCCCCHH------------HHhhhCCCCCCCChhHHHH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDSQDPK------------EAHARRGAPWTFNPLLLLN 167 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g~~~~------------~~~~~~~~~~~~~~~~~~t 167 (287)
++-.+.-|+||.||.|||||||.-.|-.++.+..- ..+ ..+|+.-.. .....+|.+..++.....+
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 34556889999999999999999999888872210 112 345543111 0123467888888877789
Q ss_pred HHHHHhcCCc-eeeccCCc
Q 023106 168 CLKNLRNQGS-VYAPSFDH 185 (287)
Q Consensus 168 v~e~l~~~~~-~~~~~~~~ 185 (287)
|++.+.-+.. +..|.|++
T Consensus 125 VLnai~~g~~~V~lPrfDK 143 (300)
T COG4240 125 VLNAIARGGPTVPLPRFDK 143 (300)
T ss_pred HHHHHhcCCCCcccccccc
Confidence 9999887754 35677876
|
|
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-06 Score=80.40 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=34.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 377777 9999999999999999999999999999876
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.2e-06 Score=76.57 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+|++++|+||||+||||++..|++.+. +..+ +.+.+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecC
Confidence 5799999999999999999999999998 7766 6665554
|
|
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-06 Score=80.31 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=41.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.+ +...|+.
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGer 194 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGER 194 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCcc
Confidence 88999 9999999999999999999999999999887 7667 5556654
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-06 Score=81.41 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=35.5
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++++ |.+.+|++++|+|+||+|||||+++|+|+..
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3489999 9999999999999999999999999999877
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.1e-06 Score=80.09 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.2
Q ss_pred cccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 94 ~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+.+++++ |.+.+|++++|+|+||+|||||+++|+++.+. .+.+ +.+.|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liG 200 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIG 200 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEEC
Confidence 3488887 99999999999999999999999999998850 2345 45544
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.6e-06 Score=69.89 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCCCHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQDPKE 149 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~~~~~ 149 (287)
++|.+++|+|+||||||||++.|++.+. +.. | +.++|.++..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~---~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH---ELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hCCCCEEEEcCEeHHh
Confidence 5799999999999999999999999886 543 4 6788876643
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-06 Score=70.31 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=24.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.+++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999765
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.5e-06 Score=69.97 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=24.1
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|++.. -|+.|+|.||+|||||+..|+-...
T Consensus 33 LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 33 LEFRA-PITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred ccccC-ceEEEEcCCCccHHHHHHHHHhhcc
Confidence 44444 4888999999999999999986654
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.3e-06 Score=83.90 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=34.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++.+.+|++++++||||+||||++..|++.+.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 6778888888999999999999999999999999885
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=84.48 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=34.4
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+++....+.++||+|++|+|||||++.+.+.+.. ...| +.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeec
Confidence 4677889999999999999999999999776651 3356 66655
|
syringae 6; Provisional |
| >PRK06936 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.6e-06 Score=78.13 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=37.2
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++--
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~---~dv~ 191 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE---VDVT 191 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC---CCEE
Confidence 389999 9999999999999999999999999999887 6543
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.2e-06 Score=77.36 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=26.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.+|++++|+||||+||||+++.|++..
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999964
|
|
| >PRK06820 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.5e-06 Score=77.93 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
.+++.+ +.+.+|++++|+|+||+|||||+++|++... ++.+
T Consensus 152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~---~dv~ 192 (440)
T PRK06820 152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA---ADVM 192 (440)
T ss_pred ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC---CCEE
Confidence 389999 9999999999999999999999999999887 7765
|
|
| >PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.8e-06 Score=79.66 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=36.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+++|+-+.+ +|.+++|.||+||||||+.+.|+..+.-.+.+.|
T Consensus 274 LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g 316 (512)
T PRK13477 274 LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTG 316 (512)
T ss_pred EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCC
Confidence 899999988 8899999999999999999999977642224445
|
|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=65.88 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-eeCCCCH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQDP 147 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-~~~g~~~ 147 (287)
++|++++|+|++||||||+.+.|++.+. +..+ + ++++..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~---~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR---EAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEcCccH
Confidence 4799999999999999999999999997 6554 4 4666544
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00032 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 287 | ||||
| 3c8u_A | 208 | Crystal Structure Of Putative Fructose Transport Sy | 3e-14 | ||
| 2ga8_A | 359 | Crystal Structure Of Yfh7 From Saccharomyces Cerevi | 4e-08 |
| >pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208 | Back alignment and structure |
|
| >pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 4e-65
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 10/205 (4%)
Query: 86 VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDS 144
AL Q +L L + +V L+G PG+GKSTL+ + ++ + D
Sbjct: 3 TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60
Query: 145 -------QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197
+P+ R+GAP TF+ L++Q V P FD + V
Sbjct: 61 FHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEV 120
Query: 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAK 257
G + +V I++GNYL D W+D+++++D +EV + R+++R + G D A
Sbjct: 121 GPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAV 180
Query: 258 WRIEYNDRPNAELIMKSKKNADLVI 282
R + ND NA I ++ ADL
Sbjct: 181 ARAQGNDLANARAIEAARLPADLTW 205
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 6e-56
Identities = 53/298 (17%), Positives = 94/298 (31%), Gaps = 57/298 (19%)
Query: 43 RRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALAS 102
+ + + + ++ E+ + D V D Q P A
Sbjct: 58 EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114
Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-------ASSFDS----------- 144
N + + G + A V +N + D
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLF 174
Query: 145 QDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------- 175
+DP+ AH RRG+P TF+ L K L
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WF 230
++ P F+H + DP D + ++VI++G YL D WK + + +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYK 294
Query: 231 IEVDLDTAMQRVLKRHISTGKPPDV--AKWRIEYNDRPNAELIMKSKKNADLVIKSID 286
I++D + +RV KRH+ +G + + + ND N I D ++ +
Sbjct: 295 IDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNHLIKVDNIVHIRN 352
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-06
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 87 YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD 146
LA +L N + V L G PG+GKST+A E+ + IN+ + S +
Sbjct: 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63
Query: 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG 186
+ P++ L V + G
Sbjct: 64 EVNDRLK--------PMVNLVDSLKTLQPNKVAEMIENQG 95
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 6e-32
Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 41/238 (17%)
Query: 87 YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
Y + R N + I+ +AG GKST A + +++ +
Sbjct: 57 YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116
Query: 144 SQD----------PKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVE 192
+ D + ++G P +++ L+ + +L++ +V AP + H + D +
Sbjct: 117 TTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIP 176
Query: 193 DDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRH 246
D +Q ++I++G + VS D +++ D + R
Sbjct: 177 DGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRF 236
Query: 247 ISTGKPP--DVAKWRIEYND------------------RPNAEL-IMKSKKNADLVIK 283
+ + D + Y N + I+ +++ A L++
Sbjct: 237 LKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILT 294
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 6e-30
Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 33/224 (14%)
Query: 92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDS---- 144
L + V I+G+AG GKST A + + + + D
Sbjct: 75 AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYP 134
Query: 145 ---QDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQ 200
+ R+G P ++N L+ + ++++ AP + H D + V
Sbjct: 135 NAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRH 194
Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKP-------- 252
++I++G + G VS +FD +++ ++ Q + R ++
Sbjct: 195 PDILILEGLNVLQTGP-TLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESH 253
Query: 253 ------------PDVAKWRIEYNDRPNA-ELIMKSKKNADLVIK 283
A+ +RPN E I+ ++ A LV++
Sbjct: 254 FHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLR 297
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-29
Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 41/238 (17%)
Query: 87 YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
Y Q L + I+G+AG GKST + + +++
Sbjct: 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128
Query: 144 SQD----------PKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVE 192
+ D + R+G P +++ LL L +++ Q +V P + H D V
Sbjct: 129 TTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVR 188
Query: 193 DDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFIEVDLDTAMQRVLKRH 246
+ Q +VI++G + G + VS FD F++ + + R
Sbjct: 189 GQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRV 248
Query: 247 I----STGKPPDVAKWRIEYNDRPNA-----------------ELIMKSKKNADLVIK 283
+ +T K P + E I+ K A L+++
Sbjct: 249 LSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILE 306
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 4e-22
Identities = 31/211 (14%), Positives = 73/211 (34%), Gaps = 27/211 (12%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S 141
+ + D L + +L A + ++G+ G +GK+TLA ++ + + +
Sbjct: 3 LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57
Query: 142 FDS---QDPKEAHARRGAPWTFNP------LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192
D + K H + + L + L+ + P +DH +
Sbjct: 58 MDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK 117
Query: 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKP 252
+ + +++++G +L K+ FD +++ + R +
Sbjct: 118 RTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFVVYLDCPREIRFARENDQV-----K 166
Query: 253 PDVAKWRIEYND-RPNAELIMKSKKNADLVI 282
++ K+ Y + K AD+V
Sbjct: 167 QNIQKFINRYWKAEDYYLETEEPIKRADVVF 197
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 9e-17
Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---------SFDSQDPKEAHAR--RG-- 155
++G++G +GKST+ +++ + + ++ F E A+ +G
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 86
Query: 156 ---APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
P F+ L+ LKN+ +V P++D + + +V VV+ +G +F
Sbjct: 87 NFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-PADVVLFEGILVF 145
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAEL-I 271
+++ MF + F++ D D + R + R + G+ + + +P E
Sbjct: 146 YS----QEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFC 201
Query: 272 MKSKKNADLVIKS 284
+ +KK AD++I
Sbjct: 202 LPTKKYADVIIPR 214
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-15
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 23/194 (11%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---------SFDSQDPKEAHAR--RG-- 155
++G++G +GKS++ A++V+ + + SF E A+ +G
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83
Query: 156 ---APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
P F+ L+L LK + +V P +D E+ + V VV+ +G F
Sbjct: 84 NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PADVVLFEGILAF 142
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIEYNDRPNAEL- 270
++V +F K F++ D DT + R + R IS G+ + + +P E
Sbjct: 143 YS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEF 198
Query: 271 IMKSKKNADLVIKS 284
+ +KK AD++I
Sbjct: 199 CLPTKKYADVIIPR 212
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-15
Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 36/187 (19%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----SFDSQDPKEAHARRGA-----PWT 159
I+G++G +GK+TLA + + K P + F + + + G
Sbjct: 23 IIGISGVTNSGKTTLA----KNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEA 78
Query: 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 219
N +++ + S D + ++I++G LF K
Sbjct: 79 LNMEKMMSAISCWMESARHSVVSTDQESAEE----------IPILIIEGFLLFNY----K 124
Query: 220 DVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYND--RPNAEL-IMKSKK 276
+ ++++ +F+ + + +R R +PPD + ++ P + +
Sbjct: 125 PLDTIWNRSYFLTIPYEECKRR---RSTRVYQPPDSPGY---FDGHVWPMYLKYRQEMQD 178
Query: 277 NADLVIK 283
V+
Sbjct: 179 ITWEVVY 185
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 5e-15
Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 23/189 (12%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD------PKEAHARRG-----AP 157
++G+AG +GK+TLA + + + ++ + D R P
Sbjct: 8 VIGIAGGTASGKTTLA----QALARTLGERVALL-PMDHYYKDLGHLPLEERLRVNYDHP 62
Query: 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217
F+ L L + L V P +D V VVI++G +
Sbjct: 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVR-PAPVVILEGILVLYP--- 118
Query: 218 WKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIEYNDRPNAEL-IMKSK 275
K++ + D K F++ D D R LKR + G+ + + +P + +K
Sbjct: 119 -KELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTK 177
Query: 276 KNADLVIKS 284
+ AD+++
Sbjct: 178 RYADVIVPR 186
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-12
Identities = 29/206 (14%), Positives = 60/206 (29%), Gaps = 29/206 (14%)
Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-------SFDSQDPKEAHARRGAP 157
KH I+ + G GAG ST+ + + + S F+ D K RR A
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA 62
Query: 158 WTFNPL----------LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL-------- 199
L + G ++ H + + G
Sbjct: 63 GDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFD 122
Query: 200 -QHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAK 257
++ +G + + +++ + D K + ++ + + R +T G +
Sbjct: 123 SDSHLLFYEGLHGAVVNSE-VNIAGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVT 181
Query: 258 WRIEYNDRPNAELIMKSKKNADLVIK 283
I I+ D+ +
Sbjct: 182 DVILRRMHAYVHCIVPQFSQTDINFQ 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 7e-12
Identities = 51/329 (15%), Positives = 88/329 (26%), Gaps = 72/329 (21%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPV--FGKTRSL 58
D + P++ LS + G L W + + V F + L
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87
Query: 59 VQN----KTSLKVLCSQRREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
N + +K Q + + D +Y A+ RL P L +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPW-TFN-- 161
V + G G+GK+ +A +V + + + W
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL---------SYKVQCKMDFKIF------WLNLKNC 192
Query: 162 --PLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVE-DDILVGLQHKVVIVDGNY----LFL 213
P +L L+ L Q + DH + I L+ ++ Y L L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVL 250
Query: 214 DGGVW-KDVSSMFD----------EKWFIEVDLDTAMQRVLKRHISTGKPPD-----VAK 257
V + F+ K + + H S PD + K
Sbjct: 251 L-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 258 W-RIEYNDRPNAELIMKSKKNADLVIKSI 285
+ D P + + I
Sbjct: 310 YLDCRPQDLPR-----EVLTTNPRRLSII 333
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 49.2 bits (116), Expect = 4e-07
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 32/202 (15%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQDPKEAH----- 151
+ +GP G+GKS + ++ + + + + S D E
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92
Query: 152 -ARRGAPWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGDPVEDDILVGLQ 200
RG P T + LL L + N Y S G GD + L
Sbjct: 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLP 152
Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL----DTAMQRVLKRHISTGKPPDVA 256
+ I++G +L + + ++ ++V+ + + S G
Sbjct: 153 VDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTD 212
Query: 257 KWRIEYNDRPNAELIMKSKKNA 278
Y R E + SK
Sbjct: 213 NINNVYGWRLQQEHELISKVGK 234
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 27/178 (15%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP-KEAHARRGAPWTFNPLLLLN 167
++ + G PG+GKS A++++ A D ++ ++ P L++
Sbjct: 3 VILITGMPGSGKSE-FAKLLKERG------AKVIVMSDVVRKRYSIEAKP----GERLMD 51
Query: 168 CLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227
K LR D V +++ H +V+ DG + +K +
Sbjct: 52 FAKRLREIYG------DGVVARLCVEELG-TSNHDLVVFDGVRSLAEVEEFKRLLGDSVY 104
Query: 228 KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAEL---IMKSKKNADLVI 282
+ +R+++R D +K E R EL I + AD +I
Sbjct: 105 IVAVHSPPKIRYKRMIER-----LRSDDSKEISELIRRDREELKLGIGEVIAMADYII 157
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 34/168 (20%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK--------IWPQKASSFDSQDPKEAHARRGAPW 158
K + + GP G GKST + +++ I + P E+ W
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYR--PPWESDELLALTW 59
Query: 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218
+ + N + D+ + + +Q KV V+ ++ L
Sbjct: 60 K----NITDLTVNFLLAQNDVV--LDYIAFPDEAEALAQTVQAKVDDVEIRFIIL----- 108
Query: 219 KDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRP 266
+ + ++R R + E+ +
Sbjct: 109 -------------WTNREELLRRDALRKKDEQMGERCLELVEEFESKG 143
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 9e-05
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
R I + E+R + A + L+ A+ VG+ G PG GKST + +
Sbjct: 25 RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
+ + +VE+R + AL+ +LL A+ +G+ G PGAGKST +
Sbjct: 26 QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
R I +VE+ + AQ+LL L + H VG+ G PG GKST + +
Sbjct: 49 RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
+ + + VGL+GPPGAGKST + +
Sbjct: 50 AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.97 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.97 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.97 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.97 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.97 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.97 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.97 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.97 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.97 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.97 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.97 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.97 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.97 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.97 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.97 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.96 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.96 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.96 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.96 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.96 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.96 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.96 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.96 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.96 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.95 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.95 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.95 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.95 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.95 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.95 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.95 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.95 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.95 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.94 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.94 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.93 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.93 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.93 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.93 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.93 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.92 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.91 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.9 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.9 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.9 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.89 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.89 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.89 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.89 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.88 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.88 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.87 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.86 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.85 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.84 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.83 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.82 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.82 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.8 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.79 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.78 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.78 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 99.77 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.76 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.71 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 99.7 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.68 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.67 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.67 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.65 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.65 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.63 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.62 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.58 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.57 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.57 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.57 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.56 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.56 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.54 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.53 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.52 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.51 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.49 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.48 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.46 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.44 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.42 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.38 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.38 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.36 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.36 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.33 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.32 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.3 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.29 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 99.28 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.25 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.24 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.24 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.22 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.22 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.21 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.21 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.2 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.17 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.16 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.15 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.13 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.12 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.12 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.1 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.09 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.08 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.01 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 99.0 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.98 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.97 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.94 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 98.93 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.92 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.91 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.9 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 98.89 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.88 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.88 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.87 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.86 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.85 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.84 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.84 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.74 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.72 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.71 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.7 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.69 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.62 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.61 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.6 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.59 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.58 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.57 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.55 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.54 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.53 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.53 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.52 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.48 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.47 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.47 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.46 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.43 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.41 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.4 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.4 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 98.39 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.39 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.35 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.32 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.3 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.3 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 98.27 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.26 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.24 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.24 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.23 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.23 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.18 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.17 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.15 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.15 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.14 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.1 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.1 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.07 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.06 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.03 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.03 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.03 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.02 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.02 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.0 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.99 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.96 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.94 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.94 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 97.92 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.88 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.86 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.86 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 97.85 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.85 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.84 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.82 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.81 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.8 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.76 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.76 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.75 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.73 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.72 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.63 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.61 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.59 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 97.56 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.53 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.53 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.53 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.48 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.46 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.46 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 97.45 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.41 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.4 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.38 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.37 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.37 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.36 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.36 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.36 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.36 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.35 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.34 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.34 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.33 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.32 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.32 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.32 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.28 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.27 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.25 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 97.25 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.25 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 97.24 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.24 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.23 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.23 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.23 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.23 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 97.22 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.21 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.2 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.2 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.19 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.17 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.17 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.16 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.16 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.16 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.12 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.11 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.11 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.1 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.09 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.07 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.07 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.07 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.05 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.04 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.03 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.02 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.01 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.01 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.98 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.97 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.97 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.96 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.95 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.94 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.94 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.92 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.89 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.87 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.86 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.86 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.85 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.8 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.79 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.74 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.73 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.72 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.7 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.69 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.67 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.67 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.66 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.65 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.64 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.64 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.63 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.61 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.61 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.61 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.6 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.6 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.6 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.59 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.59 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.58 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.58 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.58 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.58 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.56 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.56 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.56 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.56 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.55 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.55 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.55 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.54 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.54 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.54 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.53 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.52 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.52 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.49 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.48 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.47 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.47 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.46 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.46 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.45 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.44 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.43 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.43 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.43 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.42 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.42 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.42 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.39 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.39 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.39 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.39 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.38 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.37 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.37 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.37 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.37 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.37 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.36 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.36 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.36 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.36 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.36 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.34 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.34 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.34 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.34 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.33 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.33 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.33 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.32 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.31 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.3 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.29 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.29 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.29 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.29 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.28 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.28 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.28 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 96.27 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.26 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.26 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.26 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.25 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.25 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.24 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.24 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.24 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.22 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.22 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.21 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.2 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.2 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.2 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.19 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.19 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.19 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.19 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.19 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.18 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.16 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.15 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.14 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.14 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.13 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.13 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.13 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.13 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.13 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.13 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.12 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.12 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.11 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.11 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.1 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.1 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.1 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.09 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.07 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.06 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.06 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.05 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.03 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.03 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.03 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.02 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.0 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.0 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 96.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.0 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.98 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.98 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.97 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.97 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.96 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.93 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.9 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.9 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 95.89 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.89 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.88 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.84 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.84 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.84 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.82 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.82 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.81 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.8 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.8 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.8 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.79 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.78 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.71 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.7 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.7 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.68 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.67 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.67 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.66 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.66 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.66 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.65 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.61 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.59 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.58 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.56 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.55 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.55 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.55 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.54 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.54 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.51 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.49 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.49 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.47 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 95.45 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.44 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 95.42 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.37 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 95.37 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.3 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 95.29 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.27 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.25 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.24 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 95.18 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.17 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.15 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.15 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.12 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.1 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.07 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.06 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.06 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.01 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 95.0 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 94.98 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 94.97 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 94.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.96 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.95 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 94.93 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.9 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.89 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.88 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.88 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.85 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.83 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.83 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.83 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 94.82 |
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=274.27 Aligned_cols=174 Identities=16% Similarity=0.241 Sum_probs=138.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----H-H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----E-A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~-~ 150 (287)
+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++. . .
T Consensus 4 ~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~~ 76 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNLP 76 (359)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBCC
T ss_pred EEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECcccccccc
Confidence 699999999998866 9999999999999999999999999999999999999 9999 999998651 1 1
Q ss_pred hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+++++++||.+.+ +|+.+|+.++......... ....++++.+|||||||||+| .+
T Consensus 77 ~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPD 156 (359)
T ss_dssp GGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 234557777776543 7999999987543211000 124578999999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|++||||| .+++.+.++. . .+|+||||++++.. |++ |++++.|+++++..
T Consensus 157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999 3444444432 2 25799999999987 554 88889999988753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=278.04 Aligned_cols=175 Identities=18% Similarity=0.286 Sum_probs=138.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45699999999998766 9999999999999999999999999999999999999 9999 99999865432 22
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.++++++||.+.+ +|+.+|+.++....... +. ....++++.+|||||||||+| .+|+
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 3456677776543 79999998864321100 00 124578999999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+++.|+++.+ ..|+||||++++.. |++ |++++.|+++++.
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 999999 45555655532 24799999999987 554 8888899998874
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-35 Score=269.23 Aligned_cols=179 Identities=19% Similarity=0.229 Sum_probs=137.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----- 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----- 148 (287)
++||+++||+|.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|+++.
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 4579999999999753223448999999999999999999999999999999999999 9999 999998642
Q ss_pred HH-hhhCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE----
Q 023106 149 EA-HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
.. ..++.++++||...+ +|+.+|+.++....... +. ....++++.+|||||||||+|
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 11 224556666665443 69999998753321100 00 124578999999999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++.
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 8999999999 45666666532 24699999999976 554 8989999988874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-34 Score=267.31 Aligned_cols=176 Identities=16% Similarity=0.295 Sum_probs=136.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 55799999999998765 8999999999999999999999999999999999999 9999 99999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||.+.+ +|+.+|+.++..... +. +. ....++++.+|||||||||+| .+|+
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456777776554 699999998754321 00 00 123578999999999999998 9999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|+++.. .+|+||||++++.. |++ |++++.|++.++..
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999 45555555532 25799999999876 544 78888899888753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-34 Score=268.02 Aligned_cols=176 Identities=16% Similarity=0.263 Sum_probs=136.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 44699999999998765 8999999999999999999999999999999999999 9999 99999765321 12
Q ss_pred hCCCCCCCChhH---HHHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||.+. .+|+.+|+.++..... +. +. ....++++.+|||||||||+| .+|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 344666666543 2799999998643221 00 00 123578999999999999999 8999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999 45555555532 25799999999876 444 78888899988753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-34 Score=267.21 Aligned_cols=176 Identities=19% Similarity=0.302 Sum_probs=136.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 44699999999998765 8999999999999999999999999999999999999 9999 89999765321 12
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||...+ +++.+|+.++..... + .+. ....++++.+|||||||||+| .+|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3446666665432 699999987532110 0 011 124578999999999999998 9999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|+++++..
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 45555555532 25799999999876 544 78888899888753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-34 Score=268.59 Aligned_cols=176 Identities=14% Similarity=0.219 Sum_probs=136.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|.++..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998765 9999999999999999999999999999999999999 9999 9999976532
Q ss_pred ---HhhhCCCCCCCChhH---HHHHHHHHhcCCceee-cc-------------CC-ccCCCCCCCceeccccceEEE---
Q 023106 150 ---AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-PS-------------FD-HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 150 ---~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~~-------------~~-~~~~~~~~~~LSgGekqRv~I--- 205 (287)
...++.++++||... .+|+.+|+.++..... +. +. ....++++.+|||||||||+|
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHH
Confidence 112345666666543 2799999987532210 00 00 124578999999999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 154 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 8999999999 45555555532 25799999999876 444 78888899888753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-34 Score=264.11 Aligned_cols=176 Identities=19% Similarity=0.304 Sum_probs=136.8
Q ss_pred ccEEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-h
Q 023106 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-H 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~ 151 (287)
..+|+++||+|.| ++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|.++... .
T Consensus 12 ~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCCh
Confidence 3479999999999 7655 9999999999999999999999999999999999999 9999 89999765321 1
Q ss_pred hhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.++.++++||...+ +|+.+|+.++..... + .+. ....++++.+|||||||||+| .+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 23456667776543 799999987532110 0 011 124578999999999999998 999
Q ss_pred CEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++||||| .+++.|+++.. .+|+||||++++.. |++ |++++.|+++++..
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999 45555555532 25799999999976 444 78888899888753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-33 Score=251.38 Aligned_cols=176 Identities=19% Similarity=0.243 Sum_probs=133.2
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
+++|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|+++...
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 45899999999998876 9999999999999999999999999999999999999 9999 99999865321
Q ss_pred hhhCCCCCCCChh---HHHHHHHHHhcCCceeecc------------CC-ccCCCCCCCceeccccceEEE-----e---
Q 023106 151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPS------------FD-HGVGDPVEDDILVGLQHKVVI-----V--- 206 (287)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~------------~~-~~~~~~~~~~LSgGekqRv~I-----~--- 206 (287)
.....+.+.+|.. ..+++.+|+.++....... +. ....++.+.+|||||||||+| .
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 1111122333322 2268899998754321100 11 123467899999999999998 6
Q ss_pred ---cCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 207 ---DGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ---~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 999999999 45666665532 24699999999976 544 88889999988753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-34 Score=257.00 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=135.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH--H---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK--E--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~--~--- 149 (287)
++|+++||++.|++.. .+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|+++. .
T Consensus 6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997532 28999999999999999999999999999999999999 9999 999998651 1
Q ss_pred HhhhCCCCCCCChhH----HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..++++||.+. ..++.+|+.++..... + .+. ....++++.+|||||||||+|
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 122345666666542 2688999887532110 0 011 124578999999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++. . .+|++|||++++.. |++ |++++.|++.++..
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 8999999999 4566666554 2 24699999999875 554 88899999988754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-34 Score=263.11 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=136.4
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.+|+++||+|.|++.. ..+|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++..
T Consensus 1 M~~l~i~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGGGT--EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECCEe--eeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 44699999999997531 017999999999999999999999999999999999999 9999 8999976532
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
...++.++++||...+ +|+.+|+.++..... + .+. ....++++.+|||||||||+|
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1223456666665433 799999988643211 0 000 123578999999999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|+++.. .+|+||||++++.. |++ |++++.|++.++..
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999 45555655532 25799999999876 444 78888899888753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-33 Score=249.52 Aligned_cols=173 Identities=17% Similarity=0.269 Sum_probs=132.5
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|.++..
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45899999999998765 9999999999999999999999999999999999999 9999 8999976421
Q ss_pred HhhhCCCCCCCChhH---HHHHHHHHhcCCce---e-----------ecc-------------CC-ccCCCCCCCceecc
Q 023106 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSV---Y-----------APS-------------FD-HGVGDPVEDDILVG 198 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~---~-----------~~~-------------~~-~~~~~~~~~~LSgG 198 (287)
...+.++++++|... .+++.+|+.++... . ... +. ....++.+.+||||
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHH
Confidence 112334555555433 36899999875321 0 000 00 11346789999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
|||||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999998 9999999999 45556655533 24699999998865 444 788888888
Q ss_pred HH
Q 023106 253 PD 254 (287)
Q Consensus 253 ~~ 254 (287)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-33 Score=244.69 Aligned_cols=174 Identities=20% Similarity=0.231 Sum_probs=131.4
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----A 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~ 150 (287)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++| +.++|.++.. .
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998755 8999999999999999999999999999999999999 9999 8999976421 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceeec-------------cCC--ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-------------SFD--HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-------------~~~--~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+.++++.+|... .+|+.+|+.++...... .+. ....++.+.+|||||||||+| .+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 22334555555432 26899999875311000 010 123467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999 45555655532 35799999988765 443 7777778877764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-33 Score=249.94 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=129.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----H
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK-----E 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~-----~ 149 (287)
++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++. .
T Consensus 23 ~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp CSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCCH
T ss_pred heEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccccH
Confidence 3699999999998765 9999999999999999999999999999999999999 9999 899997542 0
Q ss_pred HhhhCCCCCCCChh---HHHHHHHHHhcCC-cee-ec-------------cCC-ccCCCCCCCceeccccceEEE-----
Q 023106 150 AHARRGAPWTFNPL---LLLNCLKNLRNQG-SVY-AP-------------SFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~~-~~~-~~-------------~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
...+..+++++|.. ..+++.+|+.++. ... .. .+. ....++++.+|||||||||+|
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11122234444432 2258888887632 110 00 011 123467899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 8999999999 45556655533 24699999999875 443 7878888887764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-33 Score=250.87 Aligned_cols=176 Identities=17% Similarity=0.172 Sum_probs=131.2
Q ss_pred CccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--H
Q 023106 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--A 150 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--~ 150 (287)
.|++|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.. .
T Consensus 12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence 578999999999998765 9999999999999999999999999999999999999 9999 8899976521 1
Q ss_pred hhhCCCCCCCChhH---HHHHHHHHhcCCceee-c-------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
..+..+++.+|... .+|+.+|+.+...... . .+. ....++.+.+|||||||||+| .+
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 12233445554432 2588888876421110 0 000 112367899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 99999999 45566665542 24699999999875 444 7777888887764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-33 Score=247.55 Aligned_cols=176 Identities=16% Similarity=0.234 Sum_probs=124.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-----HH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK-----EA 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~-----~~ 150 (287)
||+++||++.|++......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++. ..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999753222348999999999999999999999999999999999999 9999 899997542 11
Q ss_pred --hhhCCCCCCCChhH---HHHHHHHHhcCCcee----e---------------ccCCccCCCCCCCceeccccceEEE-
Q 023106 151 --HARRGAPWTFNPLL---LLNCLKNLRNQGSVY----A---------------PSFDHGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~----~---------------~~~~~~~~~~~~~~LSgGekqRv~I- 205 (287)
.++..+++++|.+. .+++.+|+.++.... . ........++++.+|||||||||+|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 11223455555433 268999987642110 0 0011112367899999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~ 255 (287)
.+|++||||| .+++.+.++.+ .+|+||||++.+.. |++ |++++.++++++
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 8999999999 45566665532 24799999985422 333 666666655543
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-33 Score=251.78 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=129.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH-------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------- 148 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------- 148 (287)
+|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999998765 9999999999999999999999999999999999999 9999 889997542
Q ss_pred --------H-HhhhCCCCCCCChh---HHHHHHHHHhcCC-cee-ec-------------cCC-ccC-CCCCCCceeccc
Q 023106 149 --------E-AHARRGAPWTFNPL---LLLNCLKNLRNQG-SVY-AP-------------SFD-HGV-GDPVEDDILVGL 199 (287)
Q Consensus 149 --------~-~~~~~~~~~~~~~~---~~~tv~e~l~~~~-~~~-~~-------------~~~-~~~-~~~~~~~LSgGe 199 (287)
. ...+..+++++|.. ..+|+.+|+.++. ... .. .+. ... .++++.+|||||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence 0 11122344444432 2268888887632 100 00 011 123 467899999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
||||+| .+|++||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 238 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 238 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999998 8999999999 45555555532 35799999999875 444 7888888887
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 239 ~~~ 241 (262)
T 1b0u_A 239 QVF 241 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-33 Score=257.96 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=132.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||+++||+|.|++. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++| |.++|+++... ..++
T Consensus 1 ml~~~~l~~~y~~~-----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECCE-----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 48999999999652 7999999999999999999999999999999999999 9999 89999765321 1233
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceee-c----------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYA-P----------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~-~----------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
.++++||...+ +|+.+|+.++..... + .+. ....++++.+|||||||||+| .+|++||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 46666665432 699999987532210 0 011 123578899999999999998 999999999
Q ss_pred c-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 215 G-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 215 E-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| .+++.|+++.+ .+|+||||++++.. |++ |+++..|++.++.
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9 45556655532 24799999999876 444 7887888888774
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-32 Score=246.66 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=133.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH--H---
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK--E--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~--~--- 149 (287)
++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++| |.++|.++. .
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 3799999999998765 9999999999999999999999999999999999999 9999 899997653 1
Q ss_pred HhhhCCCCCCCChhHH-----HHHHHHHhcCCce----ee-c-------------cCC-ccCCCCCCCceeccccceEEE
Q 023106 150 AHARRGAPWTFNPLLL-----LNCLKNLRNQGSV----YA-P-------------SFD-HGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~-----~tv~e~l~~~~~~----~~-~-------------~~~-~~~~~~~~~~LSgGekqRv~I 205 (287)
...+..+.+.+|...+ +++.+|+.++... .. . .+. ....++.+.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 1223446666665431 3899999875321 00 0 000 123467899999999999998
Q ss_pred -----ecCCEEeEec-----------chHHHHHhcc---CCe--EEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 -----VDGNYLFLDG-----------GVWKDVSSMF---DEK--WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 -----~~p~lLllDE-----------~~~~~l~~~~---~~~--i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++. ..+ |++|||++++.. |++ |++++.|+++++.
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999 4555555553 247 899999998765 444 7777888877764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-32 Score=240.15 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=129.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||+++||++.|++ +|+|+||+|++ +++||+||||||||||+++|+|+++ |++| +.++|.++... ..+.
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 4789999999964 58999999999 9999999999999999999999999 9999 89999765321 1223
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+++.+|... .+++.+|+.++..... ..+. ....++++.+|||||||||+| .+|+++||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4566666533 2689999988643211 0111 123467899999999999998 89999999
Q ss_pred ec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 214 DG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|| .+++.|.++.. .++++|||++++.. |++ |++++.|++.++.
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99 45566655532 35799999998865 443 7878888887764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-32 Score=236.83 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=116.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----- 149 (287)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.++..
T Consensus 3 ~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 3 EILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHHH
T ss_pred cEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 4799999999998755 8999999999999999999999999999999999999 9999 8899875421
Q ss_pred H--hhhCCCCCCCChhH---HHHHHHHHhcCCceee--------------ccCC-ccCCCCCCCceeccccceEEE----
Q 023106 150 A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA--------------PSFD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 ~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~--------------~~~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
. .++..+++.+|... .+++.+|+.++..... ..+. ....++++.+|||||||||+|
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1 11123444444322 2678888876421110 0011 123467899999999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+|+++|||| .+++.|.++.+ .+|++|||++++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 8999999999 45555655532 246999999876
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-32 Score=243.10 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=130.5
Q ss_pred EEEecCchhhhhh---hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 77 VVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~---~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
+|+++||++.|++ .. +|+++||+|++|++++|+||||||||||+++|+|+++ |++| |.++|.++..
T Consensus 16 ~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCH
Confidence 6999999999976 34 8999999999999999999999999999999999999 9999 8999986532
Q ss_pred HhhhCCCCCCCChhHH--HHHHHHHhcCCceeec-----------c-------CC---ccCCCCCCCceeccccceEEE-
Q 023106 150 AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------S-------FD---HGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------~-------~~---~~~~~~~~~~LSgGekqRv~I- 205 (287)
...+..+.+++|...+ .++.+|+.++...... . +. ....++.+.+|||||||||+|
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHH
T ss_pred HHHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHH
Confidence 1112223344443221 4899999875321100 0 00 012356788999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccC--C--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFD--E--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~--~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.. . +|++|||++++.. |++ |++++.|+++++..
T Consensus 169 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 56677777643 2 4699999998754 443 78788888888754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-31 Score=235.39 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=128.6
Q ss_pred EEEecCchhhh-hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---h
Q 023106 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---H 151 (287)
Q Consensus 77 ~i~~~~l~~~y-~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~ 151 (287)
||+++||++.| ++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... .
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 4444 8999999999999999999999999999999999999 9999 99999765321 1
Q ss_pred hhCCCCCCCChhHH--HHHHHHHhcCCceeec-----------cCCcc----------CCCCCCCceeccccceEEE---
Q 023106 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------SFDHG----------VGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------~~~~~----------~~~~~~~~LSgGekqRv~I--- 205 (287)
.+..+.+.+|...+ .|+.+|+.++...... ..... ..++.+.+|||||||||+|
T Consensus 74 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 22335555554322 4899999875211000 00000 0123567999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++... +|++|||++.+.. |++ |++++.|++.++..
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 8999999999 456666655432 4699999998754 443 78888898888754
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-32 Score=245.10 Aligned_cols=176 Identities=18% Similarity=0.183 Sum_probs=132.7
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||++.|++.. .+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.. ...
T Consensus 53 ~i~~~~vs~~y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 53 RIEFENVHFSYADGR---ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CEEEEEEEEESSTTC---EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHHH
T ss_pred eEEEEEEEEEcCCCC---ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHHH
Confidence 599999999996421 28999999999999999999999999999999999999 9999 9999986532 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------------cCCc---cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------------SFDH---GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------------~~~~---~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|...+ .|+.+|+.++...... .+.. ....+....|||||||||+|
T Consensus 127 r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp HHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred hcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 3334555554332 5899999886432100 0000 01134567899999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+++.|.++... +|+||||++.+.. |++ |++++.|+++++...
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 8999999999 455556555433 5799999999876 554 899999999998653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-32 Score=241.00 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=131.1
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
||+++||++.|+ +......+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.....+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence 589999999997 21000128999999999999999999999999999999999999 9999 899997653222233
Q ss_pred CCCCCCChh-H---HHHHHHHHhcCCceeec-------------cCC-c--cCCCCCCCceeccccceEEE-----ecCC
Q 023106 155 GAPWTFNPL-L---LLNCLKNLRNQGSVYAP-------------SFD-H--GVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 155 ~~~~~~~~~-~---~~tv~e~l~~~~~~~~~-------------~~~-~--~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
.+++.+|.. . ..++.+|+.++...... .+. . ...++++.+|||||||||+| .+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 355566653 1 26899999875321100 011 1 22467899999999999998 9999
Q ss_pred EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
+||||| .+++.|.++.+ .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999 45566665532 24699999998765 444 77777888777653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-31 Score=233.83 Aligned_cols=172 Identities=22% Similarity=0.209 Sum_probs=121.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~-- 149 (287)
|+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+ ++ |++| +.++|.++..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 45799999999998755 99999999999999999999999999999999998 77 8999 8999976421
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCce------e-------e------ccCCccCCCCCCCc-eeccccceEE
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSV------Y-------A------PSFDHGVGDPVEDD-ILVGLQHKVV 204 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~------~-------~------~~~~~~~~~~~~~~-LSgGekqRv~ 204 (287)
...+.++.+.+|...+ +++.+|+.++... . . ...+....++++.+ |||||||||+
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 1223344455554332 5677776543110 0 0 01111234677888 9999999999
Q ss_pred E-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH----HHH----HHHhcCCCcH
Q 023106 205 I-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 205 I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~----rvi----gr~i~~G~~~ 253 (287)
| .+|++||||| .+++.|.++.+. +|++|||++++.. |++ |++++.|+++
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 8 8999999999 456666666432 4699999998753 443 7777788776
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-31 Score=236.31 Aligned_cols=173 Identities=16% Similarity=0.243 Sum_probs=125.3
Q ss_pred EEEecCchhhh--hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---H
Q 023106 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---A 150 (287)
Q Consensus 77 ~i~~~~l~~~y--~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~ 150 (287)
-|+++||++.| ++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.. .
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 48999999999 3444 8999999999999999999999999999999999999 9999 8999976421 1
Q ss_pred hhhCCCCCCCChhH--HHHHHHHHhcCCceee-c---------cCC----------ccCCCCCCCceeccccceEEE---
Q 023106 151 HARRGAPWTFNPLL--LLNCLKNLRNQGSVYA-P---------SFD----------HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 151 ~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~-~---------~~~----------~~~~~~~~~~LSgGekqRv~I--- 205 (287)
..+..+++++|... ..|+.+|+.++..... . ... .....+.+.+|||||||||+|
T Consensus 80 ~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp HHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred HHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 11122333343321 1489999987531100 0 000 011234578999999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.|.++... +|++|||++.+.. |++ |++++.|+++++.
T Consensus 160 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 8999999999 455566555332 4799999998754 443 7777888887764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-31 Score=228.63 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=117.0
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
.+|+++||++.|++ . +|+++||+|++|++++|+||||||||||+++|+|+++ |++| +.++|.++. ..+.
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~--~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPIT--KVKG 78 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGG--GGGG
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhh--hhcC
Confidence 37999999999987 5 9999999999999999999999999999999999999 9999 899998764 1223
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee------------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA------------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~------------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
.+.+.+|... .+++.+|+.++..... ..+. ... ++.+.+|||||||||+| .+|+++||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 3444444332 2578888866421100 0011 112 67889999999999998 89999999
Q ss_pred ec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|| .+++.|.++.+ .++++|||++++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99 45555555542 35799999988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-31 Score=236.11 Aligned_cols=166 Identities=10% Similarity=0.185 Sum_probs=120.4
Q ss_pred ccEEEecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHh
Q 023106 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAH 151 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~ 151 (287)
|.+|+++||++.|++ .. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.
T Consensus 1 M~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~------ 67 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS------ 67 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECSC------
T ss_pred CCeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCE------
Confidence 446999999999973 33 8999999999999999999999999999999999999 9999 888883
Q ss_pred hhCCCCCCCChhH--HHHHHHHHhcCCceeec-------cCC---------c---cCCCCCCCceeccccceEEE-----
Q 023106 152 ARRGAPWTFNPLL--LLNCLKNLRNQGSVYAP-------SFD---------H---GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 152 ~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~-------~~~---------~---~~~~~~~~~LSgGekqRv~I----- 205 (287)
+.+.+|... ..++.+|+.++...... ... . ...++.+.+|||||||||+|
T Consensus 68 ----i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 68 ----VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp ----EEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred ----EEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 222222211 25788888775321100 000 0 01246788999999999998
Q ss_pred ecCCEEeEec-----------chHHHHH---hccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVS---SMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~---~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+++.+. ++... +|++|||++.+.. |++ |++++.|+++++..
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 8999999999 3344442 22222 4699999988643 443 77778888887754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-31 Score=237.27 Aligned_cols=175 Identities=18% Similarity=0.140 Sum_probs=122.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCcc-eeeCCCCHHH--
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKA-SSFDSQDPKE-- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p~~G-i~~~g~~~~~-- 149 (287)
+++|+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+ ++ |++| |.++|.++..
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 34799999999998755 99999999999999999999999999999999998 46 8899 8999986532
Q ss_pred --HhhhCCCCCCCChhH---HHHHHHHHhcCC---------c-ee-----------eccCC--ccCCCCCCC-ceecccc
Q 023106 150 --AHARRGAPWTFNPLL---LLNCLKNLRNQG---------S-VY-----------APSFD--HGVGDPVED-DILVGLQ 200 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~---~~tv~e~l~~~~---------~-~~-----------~~~~~--~~~~~~~~~-~LSgGek 200 (287)
...+.++.+.+|... .+++.+++.+.. . .. ...+. ....++++. +||||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 111223333333321 134444443211 0 00 00111 122356676 5999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH----HHH----HHHhcCCCcH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~----rvi----gr~i~~G~~~ 253 (287)
|||+| .+|++||||| .+++.|.++.+. +|++|||++++.. |++ |++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99998 8999999999 566677766432 4699999988742 443 7888888888
Q ss_pred HHH
Q 023106 254 DVA 256 (287)
Q Consensus 254 ~~~ 256 (287)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-30 Score=231.89 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=121.4
Q ss_pred EEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
||+++||++.|+ +.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.+ +.
T Consensus 4 ~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----------~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----------YQ 66 (253)
T ss_dssp EEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----------CS
T ss_pred eEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----------ec
Confidence 799999999998 655 8999999999999999999999999999999999999 9999 552 11
Q ss_pred CCCCCCChhH---HHHHHHHHhcCCceee------c------------cCC-ccCCCCCCCceeccccceEEE-----ec
Q 023106 155 GAPWTFNPLL---LLNCLKNLRNQGSVYA------P------------SFD-HGVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 155 ~~~~~~~~~~---~~tv~e~l~~~~~~~~------~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
.+++.+|... .+++.+|+.++..... . .+. ....++.+.+|||||||||+| .+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 146 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 2333333321 2578888877532110 0 000 123467899999999999998 89
Q ss_pred CCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
|++||||| .+++.|.++.+ .+|++|||++++.. |++ |+ ++.|+++++.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999 45566665543 24699999999865 443 77 7788877763
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-30 Score=231.65 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=127.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|+++ | +| |.++|.++.. ...
T Consensus 17 ~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHHH
Confidence 699999999997631 1238999999999999999999999999999999999998 7 79 8999987532 112
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-c-------cCC---------cc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-P-------SFD---------HG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-~-------~~~---------~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|...+ .|+.+|+.++..... . ... .. ...+.+.+|||||||||+|
T Consensus 92 ~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 92 RSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred hccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 3334444443321 488999987531100 0 000 00 0134678999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|.++.+. +|++|||++.+.. |++ |++++.|+++++..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 455566655433 4699999998754 443 78888888888754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-30 Score=224.67 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=116.4
Q ss_pred EEEecCchhhhhh--hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~--~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
+|+++||++.|++ .. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.
T Consensus 6 ~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~-------- 70 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR-------- 70 (229)
T ss_dssp EEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECSC--------
T ss_pred eEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECCE--------
Confidence 7999999999953 33 8999999999999999999999999999999999999 9999 888883
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeec-------cCC---------c---cCCCCCCCceeccccceEEE-----ec
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------SFD---------H---GVGDPVEDDILVGLQHKVVI-----VD 207 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------~~~---------~---~~~~~~~~~LSgGekqRv~I-----~~ 207 (287)
+.+.+|...+ .++.+|+.++...... ... . ....+.+.+|||||||||+| .+
T Consensus 71 --i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 --ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp --EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred --EEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 2222222111 3778888775321000 000 0 01123468999999999998 89
Q ss_pred CCEEeEec-------chHHHHHh-----ccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHH
Q 023106 208 GNYLFLDG-------GVWKDVSS-----MFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 208 p~lLllDE-------~~~~~l~~-----~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~ 256 (287)
|+++|||| ...+.+.+ +... +|++|||++.+.. |++ |++++.|+++++.
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999 22222322 2222 4699999998754 333 7777788877764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-31 Score=246.39 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=128.2
Q ss_pred cEEEecCchhhh--hhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---
Q 023106 76 PVVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--- 149 (287)
Q Consensus 76 ~~i~~~~l~~~y--~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--- 149 (287)
..|+++||+|.| ++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ ++| |.++|+++..
T Consensus 18 ~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCCh
Confidence 369999999999 4444 9999999999999999999999999999999999874 578 9999987532
Q ss_pred HhhhCCCCCCCChhHH--HHHHHHHhcCCceeecc-------CC-ccCCCCCCCc-----------eeccccceEEE---
Q 023106 150 AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYAPS-------FD-HGVGDPVEDD-----------ILVGLQHKVVI--- 205 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~-------~~-~~~~~~~~~~-----------LSgGekqRv~I--- 205 (287)
...++.+.++||.+.+ .++.+|+.+........ .. ....++++.+ |||||||||+|
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 1123345556665432 58999997533211000 00 0123566666 99999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.|+++... +|++|||++.+.. |++ |++++.|++.++..
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 455566655432 5799999876544 554 88888999998753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-30 Score=229.68 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=124.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
||+++||++. . +|+|+||+|++|++++|+||||||||||+++|+|+++ |+ | +.++|.++.. ...
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 6999999987 3 8999999999999999999999999999999999999 99 9 8999976532 111
Q ss_pred hCCCCCCCChh---HHHHHHHHHhcCCceeec---------cCC-ccCCCCCCCceeccccceEEE-----ecCC-----
Q 023106 153 RRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGN----- 209 (287)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~----- 209 (287)
+..+++.+|.. ..+++.+|+.++...... .+. ....++.+.+|||||||||+| .+|+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~ 151 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 151 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCC
Confidence 12233344332 226899999875321100 011 123467899999999999998 8899
Q ss_pred --EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 --YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 --lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999 45666666532 24699999999865 443 7777788877764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-28 Score=239.47 Aligned_cols=176 Identities=20% Similarity=0.225 Sum_probs=131.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
+|+++||+++|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 699999999997421 128999999999999999999999999999999999999 9999 99999876431 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCC-c-eeecc-------CC---------c---cCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQG-S-VYAPS-------FD---------H---GVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~-~-~~~~~-------~~---------~---~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|.+.+ .|+.||+.++. . ..... .. . ........+||||||||++|
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred hcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 3445566665432 59999998864 1 10000 00 0 01123457899999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.+. ++++|||++.+.. |++ |++++.|+++++..
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999 455556655433 4799999998865 444 78888999888753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-29 Score=223.06 Aligned_cols=171 Identities=11% Similarity=0.055 Sum_probs=126.7
Q ss_pred EEEecCchhhhhh----hhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHh
Q 023106 77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~----~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~ 151 (287)
||+++||++.|++ .. +|+++||+|+ |++++|+||||||||||+++|+|++ |++| +.++|.++....
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~ 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence 4899999999976 44 8999999999 9999999999999999999999986 6789 889997653211
Q ss_pred hhCCCC-CCCChhH-HHHHHHHHhcCCcee----------eccCC-c-cCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 152 ARRGAP-WTFNPLL-LLNCLKNLRNQGSVY----------APSFD-H-GVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 152 ~~~~~~-~~~~~~~-~~tv~e~l~~~~~~~----------~~~~~-~-~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
.+..+. +.+|... .+++.+|+.+..... ...+. . ...++++.+|||||||||+| .+|++||
T Consensus 72 ~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 151 (263)
T 2pjz_A 72 NYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG 151 (263)
T ss_dssp CCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred HhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 122344 5555432 367888887632110 00111 1 23467899999999999998 8999999
Q ss_pred Eec-----------chHHHHHhccCCeEEEEcChHHHHH----HHH----HHHhcCCCcHHHH
Q 023106 213 LDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~----rvi----gr~i~~G~~~~~~ 256 (287)
||| .+++.|.++.+.+|++|||++++.. |++ |++++.|+++++.
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred EECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999 5666777665555799999988754 333 6777788887775
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-28 Score=242.49 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=132.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFENT--DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 599999999995421 238999999999999999999999999999999999999 9999 99999986431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------------cCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------------SFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------------~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.||+.++...... ....+ ...+.+.+||||||||++|
T Consensus 416 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 2224444443322 4889999876431100 00001 1245678999999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|+++|||| .+.+.+.++... +++|||+++.+.. |++ |++++.|+++++...
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 8999999999 455556555433 4799999998865 554 899999999998653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-28 Score=241.93 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=129.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||++.|++.. .+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 354 ~i~~~~v~~~y~~~~---~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKK---PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSSS---CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCCC---ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 499999999997422 28999999999999999999999999999999999999 9999 99999876431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-c----CCc----cCCCCC-----------CCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-S----FDH----GVGDPV-----------EDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-~----~~~----~~~~~~-----------~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.||+.++...... . ... ...+.. ..+||||||||++|
T Consensus 428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 2224444444322 5899999886321100 0 000 000112 26899999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+.++..+ +|+|||+++.+.. |++ |++++.|+++++..
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 445555555433 4799999999876 554 89999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-28 Score=239.16 Aligned_cols=176 Identities=18% Similarity=0.193 Sum_probs=129.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
+|+++||++.|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++.. ...
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 341 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL 415 (582)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred cEEEEEEEEEcCCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHHH
Confidence 599999999997420 128999999999999999999999999999999999999 9999 9999976532 112
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCC-c-eeec-------cCC------------ccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQG-S-VYAP-------SFD------------HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~-~-~~~~-------~~~------------~~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|.+.+ .|+.||+.++. . .... ... .........+||||||||++|
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred HhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 2234444443322 48999998864 1 1000 000 001134567899999999998
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++.+. +|++|||++.+.. |++ |++++.|+++++..
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 8999999999 455556555433 4799999998754 444 78888999988754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-28 Score=241.22 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=130.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ..+|+|+||++++|+++||+||||||||||+++|+|+++ |++| +.++|.++... ..
T Consensus 339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 499999999997521 238999999999999999999999999999999999999 9999 99999876431 12
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-----------------cCCc---cCCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------------SFDH---GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------------~~~~---~~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+.+++|.+.+ .|+.||+.++...... .+.. ........+|||||||||+|
T Consensus 414 r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 414 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred hhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 2334445544322 4899999876421100 0000 01123456899999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.+.++... +++||||++.+.. |++ |++++.|+++++..
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 344455554433 4799999998865 544 88899999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-27 Score=215.57 Aligned_cols=162 Identities=10% Similarity=0.177 Sum_probs=102.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++|+++||++.+ .. +|+++||+|++|+++||+||||||||||+++|+|+++ |++| +.++|.
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~--------- 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR--------- 100 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCSC---------
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCE---------
Confidence 369999999864 33 8999999999999999999999999999999999999 9999 888873
Q ss_pred CCCCCCChhHH--HHHHHHHhcCCceeec-------cCC------------ccCCCCCCCceeccccceEEE-----ecC
Q 023106 155 GAPWTFNPLLL--LNCLKNLRNQGSVYAP-------SFD------------HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------~~~------------~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
+.+.+|...+ .++.+|+. +...... ... .....+.+.+|||||||||+| .+|
T Consensus 101 -i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 -ISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp -EEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred -EEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 1222222111 36777776 3211000 000 001123457999999999998 899
Q ss_pred CEEeEec-----------chHHHH-HhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDV-SSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l-~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+++|||| .+++.+ .++.. .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999 223322 12222 24699999998754 333 77777888887743
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-25 Score=202.57 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=129.8
Q ss_pred EEEecCchhhhhhhhhccccccccccc-----------------------cCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~-----------------------i~~GeivgIiGpNGsGKSTLlk~L~Gll~~ 133 (287)
+|++++|++.|+. +++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 5999999999964 44444443 89999999999999999999999999998
Q ss_pred cCCCcc---ee---eCCCCH-HHHhhh------CCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceecccc
Q 023106 134 IWPQKA---SS---FDSQDP-KEAHAR------RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 134 ~~p~~G---i~---~~g~~~-~~~~~~------~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGek 200 (287)
|..| +. .++.-. ...... .+.+..++...+...++.+.. ...+..+..|||||+
T Consensus 116 --~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~-----------~~~~~~~~~lS~G~~ 182 (312)
T 3aez_A 116 --RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKS-----------GSDYACAPVYSHLHY 182 (312)
T ss_dssp --TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHT-----------TCSCEEEEEEETTTT
T ss_pred --ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCC-----------CcccCCcccCChhhh
Confidence 7644 21 111100 000000 112222222222333333321 112345678999999
Q ss_pred ceEEE-----ecCCEEeEecchH------HHHHhccCCeEEEEcChHHHHHHHHHHHhc----------------CCCcH
Q 023106 201 HKVVI-----VDGNYLFLDGGVW------KDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TGKPP 253 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE~~~------~~l~~~~~~~i~vtHd~~~~~~rvigr~i~----------------~G~~~ 253 (287)
||+.+ .+|++||+||... ..+.++++..|+|+||.+.+..|++.|.+. .|-+.
T Consensus 183 qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~ 262 (312)
T 3aez_A 183 DIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSD 262 (312)
T ss_dssp EEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCH
T ss_pred hhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCH
Confidence 99976 7899999999322 357788888899999999988887766542 24444
Q ss_pred HHH----HHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 254 DVA----KWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 254 ~~~----~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
+.+ ..+|...+.|+++ +|+|++.+||+||++..
T Consensus 263 e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 263 SQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred HHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 433 3556677889998 99999999999998653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-26 Score=242.74 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=132.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
.|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|+|+++ |++| |.++|.++.. ...
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 499999999997542 2238999999999999999999999999999999999999 9999 9999987643 122
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec-------------------cCCcc---CCCCCCCceeccccceEEE---
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP-------------------SFDHG---VGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-------------------~~~~~---~~~~~~~~LSgGekqRv~I--- 205 (287)
+..+.+++|+..+ .|+.+|+.++...... .+..+ ........|||||||||+|
T Consensus 1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred HhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 3445566665432 5889999876421100 00000 0122456899999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+.+... .+|+||||++.+.. |++ |++++.|+++++..
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 34555555444 35799999999865 555 89999999998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-26 Score=245.84 Aligned_cols=178 Identities=19% Similarity=0.186 Sum_probs=134.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~ 152 (287)
-|+++||+++|++.. ..++|+|+||+|++|+.+||+|+||||||||+++|.|++. |++| |.+||.++.. ...
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997542 2348999999999999999999999999999999999999 9999 9999987643 223
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-------------------ccCCccCC---CCCCCceeccccceEEE---
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-------------------PSFDHGVG---DPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-------------------~~~~~~~~---~~~~~~LSgGekqRv~I--- 205 (287)
+..+..++|++.+ -|+.+||.++..... .....+.. ......||||||||++|
T Consensus 1152 R~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred HhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 3445555555443 588999987632100 00011111 12345799999999998
Q ss_pred --ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+.+.|++++.. +|+|+|.++.+.. |++ |++++.|+++++...
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 8999999999 345556666554 4799999999877 666 999999999999753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-26 Score=241.48 Aligned_cols=177 Identities=19% Similarity=0.192 Sum_probs=129.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... ..
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 499999999997532 2238999999999999999999999999999999999999 9999 99999875431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCcc---CCCCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHG---VGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~---~~~~~~~~LSgGekqRv~I----- 205 (287)
+..+++++|.+.+ .|+.||+.++..... ..+..+ ........|||||||||+|
T Consensus 463 r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 2224444444322 488899987542100 000001 1234567899999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+.+.+..+... +|+|||+++.+.. |++ |++++.|+++++..
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999 233444444333 5799999999876 544 88889999988754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-25 Score=213.53 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=109.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
++++++++++.|++. .|.++||+|++|+++||+||||||||||+++|+|+++ |++| +.+++..+.. ..+
T Consensus 268 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~~i~~--~~q 337 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQILSY--KPQ 337 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCCCEEE--ECS
T ss_pred ceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCeeeEe--ech
Confidence 479999999999873 5778899999999999999999999999999999999 9999 7777764321 111
Q ss_pred CCCCCCChhHHHHHHHHHhcCCceee-----------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 155 GAPWTFNPLLLLNCLKNLRNQGSVYA-----------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
.....+ ..++.+++........ ..+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 338 ~~~~~~----~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 338 RIFPNY----DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp SCCCCC----SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hccccc----CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 111111 1345555543211000 0010 124568899999999999999 8999999999
Q ss_pred ---------chHHHHHhccC---C-eEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD---E-KWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~---~-~i~vtHd~~~~~~ 240 (287)
.+++.|.++.. . +++||||++++..
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45666666542 2 4799999999986
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-25 Score=216.79 Aligned_cols=165 Identities=14% Similarity=0.208 Sum_probs=115.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
.++++++|+++.|++. .|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.+ ...
T Consensus 285 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~-~~~------- 348 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW-DLT------- 348 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC-CCC-------
T ss_pred CeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE-Cce-------
Confidence 3579999999999763 6889999999999999999999999999999999999 9999 654 111
Q ss_pred CCCCCCCChh---HHHHHHHHHhcC------Cc--e--eeccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 154 RGAPWTFNPL---LLLNCLKNLRNQ------GS--V--YAPSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~------~~--~--~~~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
+.+.+|.. ..+++.+++... .. . ....+. ....++.+.+|||||||||+| .+|++||||
T Consensus 349 --i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 349 --VAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp --EEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred --EEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 11111111 012333333211 00 0 000111 134578899999999999998 899999999
Q ss_pred c-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH------HHHhcCCCcHHHHH
Q 023106 215 G-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAK 257 (287)
Q Consensus 215 E-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi------gr~i~~G~~~~~~~ 257 (287)
| .+++.|.++. . .+|+||||++++.. |++ +++++.|+++++..
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9 4566666653 2 25799999999986 443 34445789888765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-25 Score=219.79 Aligned_cols=163 Identities=17% Similarity=0.259 Sum_probs=115.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhC
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARR 154 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~ 154 (287)
.+++++|+++.|++. .|+++||+|.+|+++||+||||||||||+++|+|+++ |++| +.+. ..
T Consensus 356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-~~-------- 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-LT-------- 418 (607)
T ss_dssp EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-CC--------
T ss_pred eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-eE--------
Confidence 479999999999763 6889999999999999999999999999999999999 9999 6542 11
Q ss_pred CCCCCCChh---HHHHHHHHHhcC------Cc------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 155 GAPWTFNPL---LLLNCLKNLRNQ------GS------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~------~~------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
+.+.+|.. ..+++.+++... .. +..... ....++.+.+|||||||||+| .+|++||||
T Consensus 419 -i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 419 -VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp -EEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC-TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred -EEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 11111111 012333333221 00 000111 134567899999999999998 899999999
Q ss_pred c-----------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH------HHHhcCCCcHHHHH
Q 023106 215 G-----------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAK 257 (287)
Q Consensus 215 E-----------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi------gr~i~~G~~~~~~~ 257 (287)
| .+++.|+++. . .+|+||||++++.. |++ |++.+.|+++++..
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9 4566666653 2 24799999999986 443 34445788888765
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-26 Score=239.12 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=132.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
-|+++||+++|++.. ..++|+|+||+|++|+.+||+||+|||||||+++|.|+++ |++| |.++|.++... ..
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 499999999997542 2348999999999999999999999999999999999999 9999 99999865431 11
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCccCC---CCCCCceeccccceEEE-----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDHGVG---DPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~~~~---~~~~~~LSgGekqRv~I----- 205 (287)
+..+.++.|.+.+ .|+.|||.++..-.. ..+..+.. ......||||||||++|
T Consensus 491 r~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 2224455554433 588999998743100 00111111 23456799999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
.+|+++|||| .+.+.|.++... +|+|||.+..+.. +++ |++++.|+.+++..
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 8999999999 344455555443 5799999998877 555 89999999988753
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-23 Score=176.91 Aligned_cols=172 Identities=30% Similarity=0.455 Sum_probs=137.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCCHHHH-------hhhCCCCCCCChhHHHHHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQDPKEA-------HARRGAPWTFNPLLLLNCLKNL 172 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~~~~~-------~~~~~~~~~~~~~~~~tv~e~l 172 (287)
.++|+++||+||||||||||+++|+|++. |. .| +.++|...... ....+++..++...+...+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 95 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHAL 95 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHH
Confidence 57899999999999999999999999998 63 56 66777643211 1224577788877666777777
Q ss_pred hcCCceeeccCCccCCCCCCCceeccccceE------EEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHH
Q 023106 173 RNQGSVYAPSFDHGVGDPVEDDILVGLQHKV------VIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRH 246 (287)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv------~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~ 246 (287)
..+..+..+.++... .+|+|++|++ .|.++.++++||..|..+.+.++..++++++.+....|++.|.
T Consensus 96 ~~~~~i~~p~~d~~~------~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~ 169 (208)
T 3c8u_A 96 KHQERVIYPLFDRAR------DIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW 169 (208)
T ss_dssp HHCSCEEEEEEETTT------TEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH
T ss_pred hcCCceecccCCccc------cCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 776656555555332 3689998765 4488888899998888888889999999999999888999888
Q ss_pred hcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeC
Q 023106 247 ISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 284 (287)
Q Consensus 247 i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~ 284 (287)
+..|.+.+.+..++..++.|+.+++.|.+..||+||++
T Consensus 170 ~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 170 LDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred HhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 88898888888888878999889999999999999975
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-24 Score=209.21 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=109.8
Q ss_pred cEEEe--------cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e------
Q 023106 76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S------ 140 (287)
Q Consensus 76 ~~i~~--------~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i------ 140 (287)
.+|++ +||+++|++.. .+|+++| +|++|+++||+||||||||||+++|+|++. |++| +
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~ 154 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN 154 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred ceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence 46888 89999997641 2799999 999999999999999999999999999999 9999 4
Q ss_pred ---eeCCCCHHHH-----hhhCCCCCCCCh----hHH--HHHHHHHhcCCcee-----eccCC-ccCCCCCCCceecccc
Q 023106 141 ---SFDSQDPKEA-----HARRGAPWTFNP----LLL--LNCLKNLRNQGSVY-----APSFD-HGVGDPVEDDILVGLQ 200 (287)
Q Consensus 141 ---~~~g~~~~~~-----~~~~~~~~~~~~----~~~--~tv~e~l~~~~~~~-----~~~~~-~~~~~~~~~~LSgGek 200 (287)
.++|.++... .....+.+.++. ... .++.+++....... ...+. ....++.+.+||||||
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGek 234 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGEL 234 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHH
T ss_pred hhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHH
Confidence 4677765432 111222222221 110 25666664321100 00111 1234678999999999
Q ss_pred ceEEE-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 201 HKVVI-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 201 qRv~I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|||+| .+|++||||| .+++.|+++.. .+|+||||++++..
T Consensus 235 QRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 235 QRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 99999 9999999999 35555655533 25799999998865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-24 Score=205.71 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=104.8
Q ss_pred EEe-cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e---------eeCCCC
Q 023106 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S---------SFDSQD 146 (287)
Q Consensus 78 i~~-~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i---------~~~g~~ 146 (287)
.++ +||+|+|++.. .+|+++| +|.+|+++||+||||||||||+|+|+|+++ |++| + .++|..
T Consensus 21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 455 68999997641 2789999 999999999999999999999999999999 9999 4 467776
Q ss_pred HHHH---h--hhCCCCCCCChhH----H--HHHHHHHhcCCc---e----eeccCCccCCCCCCCceeccccceEEE---
Q 023106 147 PKEA---H--ARRGAPWTFNPLL----L--LNCLKNLRNQGS---V----YAPSFDHGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 147 ~~~~---~--~~~~~~~~~~~~~----~--~tv~e~l~~~~~---~----~~~~~~~~~~~~~~~~LSgGekqRv~I--- 205 (287)
+... . ...++.+.++... . .++.+++..... . ....+. ...++++.+|||||||||+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp HHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHH
Confidence 5431 1 1122222222110 0 144455432110 0 001111 23567899999999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|+++.+ .+|+||||++++..
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8999999999 35555555532 24799999998865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-24 Score=219.83 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=57.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
.++|+++||++.|++.. ..+|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++| |.++|
T Consensus 669 ~~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~ 734 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHE 734 (986)
T ss_dssp SEEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECT
T ss_pred CceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcC
Confidence 34799999999997521 128999999999999999999999999999999999999 9999 77765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-22 Score=199.72 Aligned_cols=166 Identities=14% Similarity=0.188 Sum_probs=111.2
Q ss_pred cCchhhhhhhhhccccccccccccCCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCC
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRG 155 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~G-----eivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~ 155 (287)
+++++.|++.. .+++++||++.+| |++||+||||||||||+++|+|+++ |++|..+.+..+ .+..+.
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~~~~i--~~~~q~ 421 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIPKLNV--SMKPQK 421 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCCSCCE--EEECSS
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCccCCcE--EEeccc
Confidence 67778886532 2789999999999 7899999999999999999999999 998832222111 011111
Q ss_pred CCCCCChhHHHHHHHHHhcCCc--eee--------ccCC-ccCCCCCCCceeccccceEEE-----ecCCEEeEec----
Q 023106 156 APWTFNPLLLLNCLKNLRNQGS--VYA--------PSFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---- 215 (287)
Q Consensus 156 ~~~~~~~~~~~tv~e~l~~~~~--~~~--------~~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---- 215 (287)
....++ .++.+++..... ... ..+. ....++.+.+|||||||||+| .+|++|||||
T Consensus 422 ~~~~~~----~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~g 497 (608)
T 3j16_B 422 IAPKFP----GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAY 497 (608)
T ss_dssp CCCCCC----SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred ccccCC----ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 111111 133333321100 000 0000 124567899999999999998 8999999999
Q ss_pred -------chHHHHHhcc---C-CeEEEEcChHHHHH---HHH------HHHhcCCCcHHHHHH
Q 023106 216 -------GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 216 -------~~~~~l~~~~---~-~~i~vtHd~~~~~~---rvi------gr~i~~G~~~~~~~~ 258 (287)
.+++.|+++. . .+++||||++++.. |++ |++++.|+|+++...
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 4555666653 2 25799999999987 554 567789999988765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-23 Score=206.05 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=88.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHH---------------------HHHHHHhcccCCCc-------c-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQK-------A-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLl---------------------k~L~Gll~~~~p~~-------G-i~~~g~~ 146 (287)
+|+||||+|++|+++||+||||||||||+ +++.|+.. |+. + +.+++..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 89999999999999999999999999998 88888887 773 3 4455544
Q ss_pred HHHHhh------h----------CCCCCCCCh-----hHHHHHHHHHhcCCceeec------------------------
Q 023106 147 PKEAHA------R----------RGAPWTFNP-----LLLLNCLKNLRNQGSVYAP------------------------ 181 (287)
Q Consensus 147 ~~~~~~------~----------~~~~~~~~~-----~~~~tv~e~l~~~~~~~~~------------------------ 181 (287)
...... . ......++. ...+++.+|+.+.......
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 321100 0 000111111 1124666776653211100
Q ss_pred cCCccCCCCCCCceeccccceEEE-----ecCC--EEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 182 SFDHGVGDPVEDDILVGLQHKVVI-----VDGN--YLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 182 ~~~~~~~~~~~~~LSgGekqRv~I-----~~p~--lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.......++++.+|||||||||+| .+|+ +||||| .+++.|+++.+ .+|+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 000112467899999999999999 6777 999999 45555555543 25799999998655
Q ss_pred --HHH----------HHHhcCCCcHHHH
Q 023106 241 --RVL----------KRHISTGKPPDVA 256 (287)
Q Consensus 241 --rvi----------gr~i~~G~~~~~~ 256 (287)
|++ |++++.|+++++.
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCEEEEecccccccCCEEEEecCHHHHh
Confidence 332 4666778888764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-20 Score=161.47 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=99.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----Ccceee-----CCCCHHHH-hhhCC-CC----CC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSF-----DSQDPKEA-HARRG-AP----WT 159 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-----~~Gi~~-----~g~~~~~~-~~~~~-~~----~~ 159 (287)
+|+|+||++++|+++||+||||||||||+++|+|++....- .-++.. ........ ....+ .. ..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDA 93 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCccc
Confidence 89999999999999999999999999999999998741100 001111 11111111 11111 11 11
Q ss_pred CChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEecch---HHHHHhccCCeEEEE
Q 023106 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDGGV---WKDVSSMFDEKWFIE 232 (287)
Q Consensus 160 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE~~---~~~l~~~~~~~i~vt 232 (287)
++...+...++.+.. .....+..||+||+||+.+ .+|+++|+||.. ...+.++++.+|+++
T Consensus 94 ~~~~~~~~~L~~l~~------------~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~ 161 (245)
T 2jeo_A 94 FDNDLMHRTLKNIVE------------GKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVD 161 (245)
T ss_dssp BCHHHHHHHHHHHHT------------TCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEE
T ss_pred ccHHHHHHHHHHHHC------------CCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHhcCeEEEEE
Confidence 122222333333321 1234567899999999843 678999999921 245666666666554
Q ss_pred cChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEeC
Q 023106 233 VDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 233 Hd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~ 284 (287)
.+.+....|.+.+.+..|.+.+.+...+...+.+..+ ++.|.+..||+||++
T Consensus 162 th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 162 TDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp CCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 4434444455556557787777666777766666665 899999999999954
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-21 Score=189.41 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=96.8
Q ss_pred CchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-----------eeCCCCHHH
Q 023106 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-----------SFDSQDPKE 149 (287)
Q Consensus 82 ~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-----------~~~g~~~~~ 149 (287)
|++++|+... ..|++++ .+.+|+++||+||||||||||+|+|+|+++ |++| + .+.|.....
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 5667776543 1455555 689999999999999999999999999999 9999 6 344444322
Q ss_pred Hh---hhCCC-----CCCCCh-hH-----HHHHHHHHhcCCce---------eeccCCccCCCCCCCceeccccceEEE-
Q 023106 150 AH---ARRGA-----PWTFNP-LL-----LLNCLKNLRNQGSV---------YAPSFDHGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 150 ~~---~~~~~-----~~~~~~-~~-----~~tv~e~l~~~~~~---------~~~~~~~~~~~~~~~~LSgGekqRv~I- 205 (287)
.. ....+ ++..+. .. ..++.+++...... ..... ....++.+.+|||||||||+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL-ENVLKRDIEKLSGGELQRFAIG 233 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTC-TGGGGSCTTTCCHHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCC-cchhCCChHHCCHHHHHHHHHH
Confidence 11 01111 111111 00 01222222211000 00011 123467899999999999998
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|+++... +|+||||++++..
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 8999999999 456667766553 4799999999975
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-22 Score=205.50 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=108.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~ 156 (287)
.|...|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|-. . .| .+.... ..+
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g-----~~~~~~---~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DG-----FPTQEE---CRT 497 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TT-----CCCTTT---SCE
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CC-----Cccccc---eeE
Confidence 466669999998765 999999999999999999999999999999999621 0 11 110000 000
Q ss_pred CCCCCh----hHHHHHHHHHhcCCc---------eeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec---
Q 023106 157 PWTFNP----LLLLNCLKNLRNQGS---------VYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 157 ~~~~~~----~~~~tv~e~l~~~~~---------~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
.+.+|. ...+++.+++.+... +....+.....++++.+|||||||||+| .+|++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 111111 111456666653100 0000111112357889999999999998 8999999999
Q ss_pred --------chHHHHHhccCC-eEEEEcChHHHHH---HHH----HHHh-cCCCcHHHHH
Q 023106 216 --------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 216 --------~~~~~l~~~~~~-~i~vtHd~~~~~~---rvi----gr~i-~~G~~~~~~~ 257 (287)
.+++.|.+ ... +|++|||++++.. |++ |+++ ..|++.++..
T Consensus 578 ~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 45566666 333 4699999999976 443 6665 4788877754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-21 Score=185.19 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=96.6
Q ss_pred cCchhhhhhhhhccccccccccccC-CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-----------eeCCCCH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-----------SFDSQDP 147 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~-~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-----------~~~g~~~ 147 (287)
++++.+||... ++-..|.+. +|+++||+||||||||||+|+|+|++. |++| + .+.|.++
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 35677887653 444445444 899999999999999999999999999 9999 5 4666655
Q ss_pred HHHh---hh--CC----CCCCCChhHH--HHHHHHHhcCCc---ee--eccCC-ccCCCCCCCceeccccceEEE-----
Q 023106 148 KEAH---AR--RG----APWTFNPLLL--LNCLKNLRNQGS---VY--APSFD-HGVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 148 ~~~~---~~--~~----~~~~~~~~~~--~tv~e~l~~~~~---~~--~~~~~-~~~~~~~~~~LSgGekqRv~I----- 205 (287)
.... .. .+ ..+..+...+ .++.+++..... .. ...+. ....++.+.+|||||||||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 3211 01 11 1111111100 122333221100 00 00011 124567899999999999998
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
.+|++||||| .+++.|+++.+. +|+||||++++..
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 8999999999 355666665433 4799999998875
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-20 Score=166.40 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=124.8
Q ss_pred EEEecCchhhhhhhhhcccccccccccc-------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i-------------------~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~ 137 (287)
+|++++|++.|+. +++++++.+ .+|+++||+||||||||||+++|+|++.. .|+
T Consensus 37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 5899999999953 789999988 99999999999999999999999998741 146
Q ss_pred cc-eee---CCCCHHH-HhhhCCCCCCC------ChhHHHHHHHHHhcCCc-eeeccCCccCCCCCCCceeccccceEEE
Q 023106 138 KA-SSF---DSQDPKE-AHARRGAPWTF------NPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 138 ~G-i~~---~g~~~~~-~~~~~~~~~~~------~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~LSgGekqRv~I 205 (287)
+| +.+ +|..... .....++...+ +.......+..+..+.. +..|.++....++.......-....+.|
T Consensus 110 ~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivI 189 (308)
T 1sq5_A 110 HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILI 189 (308)
T ss_dssp CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEE
T ss_pred CCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEE
Confidence 77 777 7754311 11122221212 22222333333333333 4455555444332221100001123344
Q ss_pred ecCCEEeEec-----c-hHHHHHhccCCeEEEEcChHHHHHHHHHHHhc----------------CCCcHHH----HHHH
Q 023106 206 VDGNYLFLDG-----G-VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TGKPPDV----AKWR 259 (287)
Q Consensus 206 ~~p~lLllDE-----~-~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~----------------~G~~~~~----~~~~ 259 (287)
.++.+++.++ . -...+.++++..|+|+.|.+....|++.|.+. .|-+.+. +..+
T Consensus 190 lEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q 269 (308)
T 1sq5_A 190 LEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTL 269 (308)
T ss_dssp EECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHH
T ss_pred ECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHH
Confidence 4444443331 0 00145677888899999999988888866532 2555553 3445
Q ss_pred HHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 260 IEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 260 ~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
|...++|++. |++|.+..||+||++.
T Consensus 270 ~~~~~~~~~~~~i~~~~~~AD~vI~n~ 296 (308)
T 1sq5_A 270 WKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp HHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred HHhccHHHHHHHcccccccCcEEEEeC
Confidence 5667888887 8999999999999865
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-21 Score=187.16 Aligned_cols=141 Identities=9% Similarity=0.043 Sum_probs=97.7
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc---eeeCCCCHHHHhh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA---SSFDSQDPKEAHA 152 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G---i~~~g~~~~~~~~ 152 (287)
+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| +.++|. .
T Consensus 117 ~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~----- 177 (460)
T 2npi_A 117 TMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-P----- 177 (460)
T ss_dssp THHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-T-----
T ss_pred chhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-c-----
Confidence 4689999999985 5889999999999999999999999999999999 9988 778873 1
Q ss_pred hCCCCCCCChhH------HHHHHHHHhcCCcee-ec-cCC--------ccCCC-CCCCceeccccceEEE-------ecC
Q 023106 153 RRGAPWTFNPLL------LLNCLKNLRNQGSVY-AP-SFD--------HGVGD-PVEDDILVGLQHKVVI-------VDG 208 (287)
Q Consensus 153 ~~~~~~~~~~~~------~~tv~e~l~~~~~~~-~~-~~~--------~~~~~-~~~~~LSgGekqRv~I-------~~p 208 (287)
++++.+.+|... .+++.+|+ ++.... .. ... .+..+ ..+.+|||||+|||+| .+|
T Consensus 178 ~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 178 QQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp TSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cCCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence 334445555431 14566666 543221 00 000 00000 1167899999999977 789
Q ss_pred CE----EeEec-ch----------HHHHHhccCCeEEEEcChH
Q 023106 209 NY----LFLDG-GV----------WKDVSSMFDEKWFIEVDLD 236 (287)
Q Consensus 209 ~l----LllDE-~~----------~~~l~~~~~~~i~vtHd~~ 236 (287)
++ ||||| +. .+.+.++-...++|+||.+
T Consensus 257 ~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSS
T ss_pred ccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEccCc
Confidence 99 99999 32 2223333234679999987
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-21 Score=189.54 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=52.5
Q ss_pred CCCCCCceeccccceEEE-----ecC---CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDG---NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p---~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
.++++.+|||||||||+| .+| ++||||| .+++.|.++.+ .+|+||||++++.. |++
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~ 616 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 616 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEE
Confidence 467899999999999998 444 5999999 45555655543 25799999998754 432
Q ss_pred ----------HHHhcCCCcHHHH
Q 023106 244 ----------KRHISTGKPPDVA 256 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~ 256 (287)
|++++.|+++++.
T Consensus 617 ~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 617 DLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEESSSGGGCCEEEEEECHHHHH
T ss_pred EecCCcCCCCCEEEEecCHHHHH
Confidence 6788899998874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-19 Score=163.89 Aligned_cols=201 Identities=22% Similarity=0.272 Sum_probs=138.4
Q ss_pred cCchhhhhhhhhccccccccccccCCCe------EEEEECCCCCCHHHHHHHHHHHhcccCCCcc----eeeCCCCH--H
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA----SSFDSQDP--K 148 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~Ge------ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G----i~~~g~~~--~ 148 (287)
+.+++.|++.. .|.+++..+..+. ++||+||||||||||+++|.+++.. .|++| +..||... .
T Consensus 64 rll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~~v~~i~~D~f~~~~~ 138 (321)
T 3tqc_A 64 RLLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHPNVEVITTDGFLYSNA 138 (321)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCCCEEEEEGGGGBCCHH
T ss_pred HHHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCeEEEEeecccccchh
Confidence 34566666665 7888888887776 9999999999999999999999861 12344 33455321 1
Q ss_pred H-----HhhhCCCCCCCChhHHHHHHHHHhcCC-ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecc------
Q 023106 149 E-----AHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------ 216 (287)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~------ 216 (287)
. ...+.|.+..++...+.+.++.+..+. .+..|.|+....++.+...-.-....+.|.++.+++.|+.
T Consensus 139 ~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~ 218 (321)
T 3tqc_A 139 KLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQ 218 (321)
T ss_dssp HHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSS
T ss_pred hhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccc
Confidence 1 123456778888888889999999887 6777888776655432211111233455555555555541
Q ss_pred hHHHHHhccCCeEEEEcChHHHHHHHHHHHhc-C---------------CCcHH----HHHHHHHhcCccchh-hhcccC
Q 023106 217 VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-T---------------GKPPD----VAKWRIEYNDRPNAE-LIMKSK 275 (287)
Q Consensus 217 ~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i~-~---------------G~~~~----~~~~~~~~~~~~~~~-~i~~~~ 275 (287)
-+..+.++++..|+|+.+.+....|++.|... . +-+.+ .+...|...+.|+++ +|+|++
T Consensus 219 ~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr 298 (321)
T 3tqc_A 219 LQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYK 298 (321)
T ss_dssp CCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGG
T ss_pred hhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCc
Confidence 12236778888999999999999988866532 1 33332 345667778899997 999999
Q ss_pred CCCCEEEeCCC
Q 023106 276 KNADLVIKSID 286 (287)
Q Consensus 276 ~~ad~ii~~~~ 286 (287)
.+||+||++..
T Consensus 299 ~~Adlil~~g~ 309 (321)
T 3tqc_A 299 NRAQLILEKAA 309 (321)
T ss_dssp GGCSEEEEECT
T ss_pred cCceEEEecCC
Confidence 99999998654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-21 Score=163.52 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=77.7
Q ss_pred hhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChh
Q 023106 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPL 163 (287)
Q Consensus 85 ~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~ 163 (287)
|.|++.. +|+++ ++|+++||+||||||||||+++|+|+ + |++| +............+..+++.+|..
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 4677766 89985 79999999999999999999999999 9 9999 532100000001233466677653
Q ss_pred HHHHHHHHH-hcCCcee--ecc-CCccCCCCCCCceeccccceEEE-----ecCCEEeEec-------chHHHHHhccC-
Q 023106 164 LLLNCLKNL-RNQGSVY--APS-FDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-------GVWKDVSSMFD- 226 (287)
Q Consensus 164 ~~~tv~e~l-~~~~~~~--~~~-~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-------~~~~~l~~~~~- 226 (287)
.+|+ .+..... ... ............ ..||||||+| .+|++||||| .+++.|.++..
T Consensus 76 -----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l~~g 149 (208)
T 3b85_A 76 -----NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFG 149 (208)
T ss_dssp ---------CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTBCTT
T ss_pred -----HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHhcCC
Confidence 3333 2210000 000 000000000011 2399999988 8999999999 45666666622
Q ss_pred CeEEEEcChHHHHH
Q 023106 227 EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 ~~i~vtHd~~~~~~ 240 (287)
..+++|||++++..
T Consensus 150 ~tiivtHd~~~~~~ 163 (208)
T 3b85_A 150 SKMVVTGDITQVDL 163 (208)
T ss_dssp CEEEEEEC------
T ss_pred CEEEEECCHHHHhC
Confidence 23459999998865
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-18 Score=141.28 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHH------------HHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAA------------EVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL 165 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk------------~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~ 165 (287)
|+||++++|++++|+||||||||||++ .+.|++. ++.| ..+.+... ...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~---~~~~~~~~~~~~~---------------~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS---DDENDQTVTGAAF---------------DVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC---SSTTCGGGHHHHH---------------HHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc---CcccchhhHHHHH---------------HHH
Confidence 689999999999999999999999999 5555554 4433 11111000 000
Q ss_pred -HHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEecc-----------------------
Q 023106 166 -LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDGG----------------------- 216 (287)
Q Consensus 166 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~----------------------- 216 (287)
......+..+..... + .....|+|++||+.| .+|.+++|||+
T Consensus 63 ~~~~~~~~~~g~~~~~--------~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 63 HYIVSKRLQLGKLTVV--------D-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRK 133 (171)
T ss_dssp HHHHHHHHHTTCCEEE--------E-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHH
T ss_pred HHHHHHHHhCCCeEEE--------E-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHH
Confidence 011111111111110 0 223359999999988 89999999991
Q ss_pred hHHHHHhccC-------CeEEEEcChHHHHH
Q 023106 217 VWKDVSSMFD-------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ~~~~l~~~~~-------~~i~vtHd~~~~~~ 240 (287)
....+.+++. ..|++|||++++..
T Consensus 134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 2233333322 24799999999865
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=152.60 Aligned_cols=137 Identities=27% Similarity=0.461 Sum_probs=111.1
Q ss_pred hhhCCCCCCCChhHHHHHHHHHhcC-----------------------------CceeeccCCccCCCCCCCceeccccc
Q 023106 151 HARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~tv~e~l~~~-----------------------------~~~~~~~~~~~~~~~~~~~LSgGekq 201 (287)
..++|.|+.|+...+...++.|..+ ..+..|.|+....++.+...-.-...
T Consensus 181 ~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~~~~~~v~~~~ 260 (359)
T 2ga8_A 181 HKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFT 260 (359)
T ss_dssp HTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEEEEEEEECTTC
T ss_pred hccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCCCCceEecCCC
Confidence 4467888999988877777766554 34567888877766655544443446
Q ss_pred eEEEecCCEEeEecchHHHHHhccC-----CeEEEEcChHHHHHHHHHHHhcCCC--cHHHHHHHHHhcCccchhhhccc
Q 023106 202 KVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYNDRPNAELIMKS 274 (287)
Q Consensus 202 Rv~I~~p~lLllDE~~~~~l~~~~~-----~~i~vtHd~~~~~~rvigr~i~~G~--~~~~~~~~~~~~~~~~~~~i~~~ 274 (287)
++.|.++.++|+++.-|..+.++++ ..|||+.|.+...+|++.|.+..|. +.+.+..++..++.||.++|+|+
T Consensus 261 ~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~pN~~~I~~~ 340 (359)
T 2ga8_A 261 RIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNH 340 (359)
T ss_dssp CEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTTSSHHHHHT
T ss_pred CEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCchhhHhHhhc
Confidence 8888999888888767788888888 5789999999999999999998898 78888888889999999999999
Q ss_pred CCCCCEEEeCCCC
Q 023106 275 KKNADLVIKSIDI 287 (287)
Q Consensus 275 ~~~ad~ii~~~~~ 287 (287)
+.+||+|+.+.|+
T Consensus 341 ~~~ad~i~~~~~~ 353 (359)
T 2ga8_A 341 LIKVDNIVHIRND 353 (359)
T ss_dssp BCCCTTEEEEECC
T ss_pred CCCCCEEEEecCC
Confidence 9999999987654
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=133.02 Aligned_cols=166 Identities=22% Similarity=0.278 Sum_probs=106.7
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcce------eeCCC--CHHHH-hhhCCCCCCCChhHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS------SFDSQ--DPKEA-HARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi------~~~g~--~~~~~-~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.++|+++||+||||||||||+++|+|++. |.-++ ..... .+... ....+.+..++...+...++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---ERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---GGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 46899999999999999999999999987 42221 11111 11111 111111222333333444444444
Q ss_pred CCceeeccCCccCCCCCCCceecccc----ce-----EEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHH
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQ----HK-----VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKR 245 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGek----qR-----v~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr 245 (287)
...+.. ++..+|+|++ || +.+.+|.++++||+ +..+++.+++++.+.+....|.+.+
T Consensus 80 ~~~~~~----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~----~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 80 GLPVEM----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKE----LRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp TCCEEE----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHH----HHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCcCC----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHH----HHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 333222 3445666653 33 44588888888853 4556778899999999887777766
Q ss_pred Hh-cCCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEeCCC
Q 023106 246 HI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 246 ~i-~~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~~ 286 (287)
.. ..|.+...+...+...+.+.+. ++.+.+..||+||++..
T Consensus 146 ~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 146 DVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 54 4687777777777777778777 89999999999998753
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-18 Score=159.10 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=34.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++++|++.+| +++|+||||||||||+++|.+++.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999 999999999999999999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-18 Score=173.27 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=39.3
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
++|++++++. . +|+||||+|++|+++||+|+||||||||+++|+
T Consensus 628 ~~L~v~~l~~-----~----~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-----H----NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-----S----SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-----c----ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4799999863 2 799999999999999999999999999999864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-17 Score=168.18 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=42.6
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHH-HHHHhc
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAE-VVRRIN 132 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~-L~Gll~ 132 (287)
++|+++++++ . +|+||||+|++|+++||+|+||||||||+++ |+|++.
T Consensus 501 ~~L~v~~l~~-----~----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 501 GWLELNGVTR-----N----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp CEEEEEEEEE-----T----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred ceEEEEeeee-----c----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 4799999974 2 7899999999999999999999999999997 888763
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-17 Score=151.01 Aligned_cols=138 Identities=10% Similarity=0.070 Sum_probs=93.5
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPW 158 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~ 158 (287)
++++++ | .. ++++++|.+++|++++|+||||||||||+++|+|+++ |++| +.++|... ...+.
T Consensus 151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e------~~~~~ 214 (330)
T 2pt7_A 151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEE------IVFKH 214 (330)
T ss_dssp TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCC------CCCSS
T ss_pred cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeec------ccccc
Confidence 667777 7 33 7899999999999999999999999999999999999 9999 78887531 00000
Q ss_pred CCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec----chHHHHHhccCC--
Q 023106 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG----GVWKDVSSMFDE-- 227 (287)
Q Consensus 159 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE----~~~~~l~~~~~~-- 227 (287)
.. ..+.. +. . |||+||++| .+|+++++|| ++++.+..+...
T Consensus 215 -~~--------------~~i~~--~~--------g---gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~ 266 (330)
T 2pt7_A 215 -HK--------------NYTQL--FF--------G---GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHK 266 (330)
T ss_dssp -CS--------------SEEEE--EC--------B---TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCC
T ss_pred -ch--------------hEEEE--Ee--------C---CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCC
Confidence 00 00000 00 0 899999988 8999999999 455555555432
Q ss_pred -eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHHHHH
Q 023106 228 -KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 228 -~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~~~~ 261 (287)
+++++|+.+.... |++ |.....+-+.+.+.....
T Consensus 267 tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 267 GTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFK 307 (330)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHH
T ss_pred EEEEEEcccHHHHHhhhheehhcCCcccCCCCHHHHHHHHH
Confidence 4789999884432 444 111122445555554443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-17 Score=170.37 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=53.8
Q ss_pred CCCCCCceeccccceEEE-----e---cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH
Q 023106 188 GDPVEDDILVGLQHKVVI-----V---DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~---~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi 243 (287)
..+.+.+|||||+|||.| . +|.+||||| .+++.|.++.+ .+|+||||++++.. |++
T Consensus 799 lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi 878 (916)
T 3pih_A 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHII 878 (916)
T ss_dssp TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 356889999999999998 3 357999999 45555555543 25799999998865 543
Q ss_pred ----------HHHhcCCCcHHHHH
Q 023106 244 ----------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ----------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 879 vLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 879 DLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEESSSGGGCCEEEEEESHHHHHS
T ss_pred EecCCCCCCCCEEEEEcCHHHHHh
Confidence 57889999999853
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-18 Score=162.27 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=101.1
Q ss_pred cEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC---HHHH
Q 023106 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD---PKEA 150 (287)
Q Consensus 76 ~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~---~~~~ 150 (287)
++++++++++.|+ +.. +|+++ |+|.+|++++|+||||||||||+++|+|+.. |+.| +.++|+. +...
T Consensus 130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 3589999999997 444 89999 9999999999999999999999999999999 9999 7888983 4321
Q ss_pred --------hhhCCCCCCCCh----hHHHHHHHHHhcCCceeeccCCcc--CCCCCCCceeccccceEEE--ecCCE-EeE
Q 023106 151 --------HARRGAPWTFNP----LLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGLQHKVVI--VDGNY-LFL 213 (287)
Q Consensus 151 --------~~~~~~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~--~~~~~~~~LSgGekqRv~I--~~p~l-Lll 213 (287)
...+.+.+.+|. ...+++.+++.+....... .... ..-.....||+|| |||+| .+|++ --|
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~t~gl 279 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQ-REIALAIGEPPATKGY 279 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEECHHHHHHHH-HHHHHHTTCCCCSSSC
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcccccC
Confidence 122333444442 1226777776653322110 0000 0001256789999 89888 66653 445
Q ss_pred ec----chHHHHHhccC-----C-------eEEEEcChH
Q 023106 214 DG----GVWKDVSSMFD-----E-------KWFIEVDLD 236 (287)
Q Consensus 214 DE----~~~~~l~~~~~-----~-------~i~vtHd~~ 236 (287)
|. .+.+.+.++.. . ++++|||++
T Consensus 280 D~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp CTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred CHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 55 44555555544 2 247789996
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-17 Score=147.23 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=71.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc-C
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS-F 183 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~-~ 183 (287)
.+||+||||||||||+++|+|++. |++| +.++|.++........+.+.+|...+ +++.+++.++....... +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 689999999999999999999999 9999 88888765322222334455554432 56777776654332110 0
Q ss_pred C-------ccCCCCCCCceeccccceEEE--ecCCEEeEec----------chHHHHHhccCCeEEEEcChHHH
Q 023106 184 D-------HGVGDPVEDDILVGLQHKVVI--VDGNYLFLDG----------GVWKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 184 ~-------~~~~~~~~~~LSgGekqRv~I--~~p~lLllDE----------~~~~~l~~~~~~~i~vtHd~~~~ 238 (287)
. ....+..+.+|||||+||+.+ ....++++|| .+++.+.+. ..+|+|.|..+.+
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 0 011234677899999999988 4456999998 344455444 3356777776644
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-16 Score=139.52 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=88.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC-CCHH--HHhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS-QDPK--EAHA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g-~~~~--~~~~ 152 (287)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +| |+..+ +... ....
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVLSFANHKSHFWLASL 169 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEECGGGTTSGGGGGGG
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEEEEecCccccccccH
Confidence 488999999998 44 899999999999999999999999999999999997 46 44322 2110 0000
Q ss_pred hC-CCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceE--EEecCCEEe---EecchHHHHHhccC
Q 023106 153 RR-GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV--VIVDGNYLF---LDGGVWKDVSSMFD 226 (287)
Q Consensus 153 ~~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv--~I~~p~lLl---lDE~~~~~l~~~~~ 226 (287)
.. .+.+..+.. ..+.+.+... ..... + ...||||||||. .+.+|++|| ||......+..+
T Consensus 170 ~~~ni~~~~~~~--~~~~~~i~~~-------L~~gl-d--g~~LSgGqkQRARAll~~p~iLlTs~LD~~~~~~i~~l-- 235 (305)
T 2v9p_A 170 ADTRAALVDDAT--HACWRYFDTY-------LRNAL-D--GYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYL-- 235 (305)
T ss_dssp TTCSCEEEEEEC--HHHHHHHHHT-------TTGGG-G--TCCEECCCSSCCCCEECCCCEEEEESSCSTTCGGGGGG--
T ss_pred HHHhhccCcccc--HHHHHHHHHH-------hHccC-C--ccCcCHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHH--
Confidence 10 111111100 0112222210 00011 1 678999999982 238999998 443222222222
Q ss_pred CeEEEEcChHHHHH--HHH---HHHhcCCCcHHH
Q 023106 227 EKWFIEVDLDTAMQ--RVL---KRHISTGKPPDV 255 (287)
Q Consensus 227 ~~i~vtHd~~~~~~--rvi---gr~i~~G~~~~~ 255 (287)
+|++..+.. +++ |++++.|+++++
T Consensus 236 -----tH~~~~~~~aD~ivl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 236 -----HSRVQTFRFEQPCTDESGEQPFNITDADW 264 (305)
T ss_dssp -----TTTEEEEECCCCCCCC---CCCCCCHHHH
T ss_pred -----hCCHHHHHhCCEEEEeCCEEEEeCCHHHH
Confidence 454443221 222 788889999888
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-16 Score=134.26 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=71.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCCCCCCChhHH---HHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGAPWTFNPLLL---LNCLKN 171 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~---~tv~e~ 171 (287)
++.| .+|++|++++|+||||||||||+++|+|+++ ...+ +.+.+..... ....++.+.||.... +++.++
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcCC
Confidence 6777 6899999999999999999999999999985 3222 1111211111 112456667765433 333333
Q ss_pred HhcCC------ceee-cc----------------CC----ccCCCCCCCceeccccceEEEecCCEEeEecc--------
Q 023106 172 LRNQG------SVYA-PS----------------FD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-------- 216 (287)
Q Consensus 172 l~~~~------~~~~-~~----------------~~----~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~-------- 216 (287)
+.... ..+. +. .+ ....++++..|| +.+.+|++++|||.
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------~l~~~p~~~~LDep~~~l~~~~ 158 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------VFLAPPSWQDLQARLIGRGTET 158 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE------EEEECSCHHHHHHHHHTTSCSC
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE------EEEECCCHHHHHHHHHhcCCCC
Confidence 32110 0000 00 00 001134556666 56699999999993
Q ss_pred -------hHHHHHhccC----CeEEEEcChHHHHH
Q 023106 217 -------VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 -------~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++.+.++.. ..+++|||++++..
T Consensus 159 d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~ 193 (207)
T 1znw_A 159 ADVIQRRLDTARIELAAQGDFDKVVVNRRLESACA 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHH
Confidence 2223333321 35799999999975
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=129.94 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=38.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH----hhhCCCCCCCChhHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----HARRGAPWTFNPLLL 165 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----~~~~~~~~~~~~~~~ 165 (287)
.|+||||+|++|++++|+||||||||||+++|+|++ | | +.+ |.+.... ....++.+.|+....
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTI 79 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHH
Confidence 689999999999999999999999999999999975 5 6 666 6543211 112346666766543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=138.30 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=89.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--------Hh-hhCCCCCCCChh--
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--------AH-ARRGAPWTFNPL-- 163 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--------~~-~~~~~~~~~~~~-- 163 (287)
.+.++||++.+|++++|+||||||||||+++|+|++. |++| +.+.|.++.. .+ .+.++++.+|..
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 3467899999999999999999999999999999999 9989 8888876421 11 133566555533
Q ss_pred --HHHHHHHHHhcCC----cee-eccCCc-cCCCCCCCceeccccceEEE-----ecCC--EEeEec----chHHHHHhc
Q 023106 164 --LLLNCLKNLRNQG----SVY-APSFDH-GVGDPVEDDILVGLQHKVVI-----VDGN--YLFLDG----GVWKDVSSM 224 (287)
Q Consensus 164 --~~~tv~e~l~~~~----~~~-~~~~~~-~~~~~~~~~LSgGekqRv~I-----~~p~--lLllDE----~~~~~l~~~ 224 (287)
...++.+++.+.. ... ...... ...++++.+|| +||++| .+|+ +|+||. +....+.++
T Consensus 166 ~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~ 242 (302)
T 3b9q_A 166 AKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREF 242 (302)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHH
Confidence 2367888886531 110 111111 12235677889 788877 6899 999996 223334333
Q ss_pred c----CCeEEEEcC
Q 023106 225 F----DEKWFIEVD 234 (287)
Q Consensus 225 ~----~~~i~vtHd 234 (287)
. -.++++||.
T Consensus 243 ~~~~g~t~iiiThl 256 (302)
T 3b9q_A 243 NEVVGITGLILTKL 256 (302)
T ss_dssp HHHTCCCEEEEECC
T ss_pred HHhcCCCEEEEeCC
Confidence 2 235799994
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-17 Score=152.72 Aligned_cols=168 Identities=9% Similarity=-0.000 Sum_probs=101.2
Q ss_pred cEEEecCchhhhh-hhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh
Q 023106 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~~~l~~~y~-~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~ 153 (287)
++++++++++.|+ +.. +|+++ |+|.+|+++||+||||||||||+++|+|+.. |+.| +.+.|++.......
T Consensus 44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecccHHHHHHH
Confidence 4689999999997 444 89999 9999999999999999999999999999999 9999 67788764332111
Q ss_pred ----------CCCCCCC--ChhHH--HHHHHHHh-cCCceeeccCCccCCCCCCCceeccccceEEE--ecCCE-EeEec
Q 023106 154 ----------RGAPWTF--NPLLL--LNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI--VDGNY-LFLDG 215 (287)
Q Consensus 154 ----------~~~~~~~--~~~~~--~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I--~~p~l-LllDE 215 (287)
..+.+.+ +.... ..+..+.. ..........+-...-..+..||+|| |+|++ .+|.+ --+|.
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp 194 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPP 194 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCH
T ss_pred HHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCH
Confidence 0011111 11111 11111111 10000000000000002567889999 89887 67764 56776
Q ss_pred ----chHHHHHhccC---C-------eEEEEcChHHHHH-HHH----HHHhcCCCc
Q 023106 216 ----GVWKDVSSMFD---E-------KWFIEVDLDTAMQ-RVL----KRHISTGKP 252 (287)
Q Consensus 216 ----~~~~~l~~~~~---~-------~i~vtHd~~~~~~-rvi----gr~i~~G~~ 252 (287)
.+++.+.++.. . ++++|||++...- +++ |+++.+|+.
T Consensus 195 ~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 195 SVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp HHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCH
Confidence 45556666542 2 2377799873322 443 455444433
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-16 Score=133.69 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=66.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCc-cC
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GV 187 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~ 187 (287)
+++|+||||||||||+++|+|++. +.-.|.... ..........+++.++.. +..+++ +....+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~~--~~~~~~~~~~ig~~~~~~---~~~~~~-----~~~~~~~~~~~ 69 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTE--EVRDPETKKRTGFRIITT---EGKKKI-----FSSKFFTSKKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEE--EEC------CCEEEEEET---TCCEEE-----EEETTCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEhh--hhccccccceeEEEeecC---cHHHHH-----HHhhcCCcccc
Confidence 689999999999999999999986 111232110 010001112233333332 111111 00001111 12
Q ss_pred CCCCCCceeccccceEEE----------ecCCEEeEec--c-------hHHHHHhcc---CC-eEEEE---cChHHHHH
Q 023106 188 GDPVEDDILVGLQHKVVI----------VDGNYLFLDG--G-------VWKDVSSMF---DE-KWFIE---VDLDTAMQ 240 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I----------~~p~lLllDE--~-------~~~~l~~~~---~~-~i~vt---Hd~~~~~~ 240 (287)
.++++..|||||+||+.| .+|+++|||| + ..+.+.+++ .. +++++ ||++++..
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 356778899999999754 4899999999 2 223333332 23 46777 48777764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-15 Score=123.05 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=55.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
++.+++++.|++.. +++++||++++|++++|+||||||||||+|+|+|++ |++| +.++|.++.
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeee
Confidence 45567899998776 899999999999999999999999999999999987 5678 888888763
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-16 Score=150.18 Aligned_cols=151 Identities=10% Similarity=0.116 Sum_probs=95.7
Q ss_pred EEEecCchhhhhhhhhcccccccccc-ccCCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCcc-eeeCCCCHHHH--
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKA-SSFDSQDPKEA-- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl-~i~~GeivgIiGpNGsGKSTLlk~--L~Gll~~~~p~~G-i~~~g~~~~~~-- 150 (287)
+++.+++.+..++.. +|++++| .|++|++++|+||||||||||+++ ++|+++ |++| ++++|.+....
T Consensus 12 ~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~~~~ 84 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQDII 84 (525)
T ss_dssp --CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHHHHH
T ss_pred CccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHHH
Confidence 577777766655555 9999999 999999999999999999999999 789998 8888 88998874322
Q ss_pred hhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCc---------cCCCCCCCceeccccceEEEecCCEEe----Eec--
Q 023106 151 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLF----LDG-- 215 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~---------~~~~~~~~~LSgGekqRv~I~~p~lLl----lDE-- 215 (287)
.....+++.+|.... ..++.... ........ ...++.+.+||+||+|||.|-+|-.++ +|.
T Consensus 85 ~~~~~~g~~~q~~~~---~~~l~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~ 160 (525)
T 1tf7_A 85 KNARSFGWDLAKLVD---EGKLFILD-ASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVV 160 (525)
T ss_dssp HHHGGGTCCHHHHHH---TTSEEEEE-CCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHH
T ss_pred HHHHHcCCChHHhhc---cCcEEEEe-cCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHH
Confidence 122335556654321 11121100 00000000 011345678899999999886654332 354
Q ss_pred --chHHHHHhccC---CeEEEEcChHHH
Q 023106 216 --GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 216 --~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+++.+..+.+ .+|++||+++++
T Consensus 161 ~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 161 RRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 34444444322 246999999885
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-17 Score=153.79 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=44.1
Q ss_pred cccccccccCCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~Ge--------------------ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+|+++||+|++|+ ++||+||||||||||+|+|+|+++ |++| +.++|.+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~ 107 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV 107 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC---
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeec
Confidence 7999999999999 999999999999999999999999 9999 77887654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-15 Score=135.28 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=88.0
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH--------Hh-hhCCCCCCCCh----h
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE--------AH-ARRGAPWTFNP----L 163 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~--------~~-~~~~~~~~~~~----~ 163 (287)
..+||++++|++++|+||||||||||+++|+|++. |++| +.+.|.++.. .+ .+.++++.++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46899999999999999999999999999999999 9888 8888876421 11 23455555543 2
Q ss_pred HHHHHHHHHhcCC----cee-eccCCc-cCCCCCCCceeccccceEEE-----ecCC--EEeEec----chHHHHHhcc-
Q 023106 164 LLLNCLKNLRNQG----SVY-APSFDH-GVGDPVEDDILVGLQHKVVI-----VDGN--YLFLDG----GVWKDVSSMF- 225 (287)
Q Consensus 164 ~~~tv~e~l~~~~----~~~-~~~~~~-~~~~~~~~~LSgGekqRv~I-----~~p~--lLllDE----~~~~~l~~~~- 225 (287)
...++.+++.+.. ... ...... ...++++.+|| +||++| .+|. +|+||. +....+..+.
T Consensus 225 p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~ 301 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNE 301 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHH
Confidence 3367888876531 111 111111 12235677888 788876 6899 999996 2333333332
Q ss_pred ---CCeEEEEcC
Q 023106 226 ---DEKWFIEVD 234 (287)
Q Consensus 226 ---~~~i~vtHd 234 (287)
-.++++||.
T Consensus 302 ~~g~t~iiiThl 313 (359)
T 2og2_A 302 VVGITGLILTKL 313 (359)
T ss_dssp HTCCCEEEEESC
T ss_pred hcCCeEEEEecC
Confidence 235799994
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=121.07 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=105.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----cc-e-eeCCC--CH---HHH---------hhhCCCCCCCCh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KA-S-SFDSQ--DP---KEA---------HARRGAPWTFNP 162 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-----~G-i-~~~g~--~~---~~~---------~~~~~~~~~~~~ 162 (287)
-.++.++||+|++|||||||++.|.+++. +. .+ + ..|+. +. ... ....+.+..++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~ 104 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM 104 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHH
Confidence 45789999999999999999999999997 42 12 3 34442 11 111 112345777777
Q ss_pred hHHHHHHHHHhcC------CceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEecc-------h-------
Q 023106 163 LLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDGG-------V------- 217 (287)
Q Consensus 163 ~~~~tv~e~l~~~------~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~-------~------- 217 (287)
..+...++.+..+ .....+. +...+||||+||+.+ .+|+++|+||. .
T Consensus 105 ~~l~~~l~~l~~g~~t~~~~~v~~p~--------y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~~~~ 176 (290)
T 1odf_A 105 KLLQEVLNTIFNNNEHPDQDTVVLPK--------YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENND 176 (290)
T ss_dssp HHHHHHHHHHTC------CCEEEECC--------EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTTTCS
T ss_pred HHHHHHHHHhhccCccccCcceeecc--------CccccCCccccccccccceEcCCCEEEEeCccccCCccchhhhhcc
Confidence 7777777777665 2222222 446789999998532 38999999991 1
Q ss_pred ---------HHH-------HHhccCCe---EEEEc-ChHHHHHHHHHH--H-hc-C--CCcHHHHHHHHHhcCccchh-h
Q 023106 218 ---------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-IS-T--GKPPDVAKWRIEYNDRPNAE-L 270 (287)
Q Consensus 218 ---------~~~-------l~~~~~~~---i~vtH-d~~~~~~rvigr--~-i~-~--G~~~~~~~~~~~~~~~~~~~-~ 270 (287)
.+. +.+++|.. |+|.. +.+.+.++.+.| . ++ . |.+.+.+. .+...++|.++ |
T Consensus 177 ~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~-~~~~~~~p~y~~~ 255 (290)
T 1odf_A 177 LLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVH-AFVDRYMPSYKLY 255 (290)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHH-HHHHTTHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHH-HHHHHhcchHHHH
Confidence 011 34446666 99988 555555535543 2 22 3 77776664 44456777554 3
Q ss_pred -------hcccCCCCCEEEeC
Q 023106 271 -------IMKSKKNADLVIKS 284 (287)
Q Consensus 271 -------i~~~~~~ad~ii~~ 284 (287)
+.|.+ +||++|+.
T Consensus 256 ~~~~~~~~~~~~-~adlvl~~ 275 (290)
T 1odf_A 256 LNDFVRSESLGS-IATLTLGI 275 (290)
T ss_dssp HHHHHHHTCSSS-SEEEEEEE
T ss_pred hHHHHHhccCCC-CCCEEEEE
Confidence 44555 89999974
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-14 Score=128.76 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=34.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
|+++| -+.|+ +++++++.+| +.+|+||||||||||+++|..++
T Consensus 6 L~i~n-fr~~~---------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 6 LYLKG-FKSFG---------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEES-BTTBC---------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEEeC-ceeec---------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 77788 35553 2456778889 99999999999999999999765
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-14 Score=121.12 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=70.7
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--Ccc-eeeCCCCHHHHhhhCCCCCCCChhHHH---HH----HHH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKA-SSFDSQDPKEAHARRGAPWTFNPLLLL---NC----LKN 171 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p--~~G-i~~~g~~~~~~~~~~~~~~~~~~~~~~---tv----~e~ 171 (287)
-..++|++++|+||||||||||+++|+|+++ | ..| +.+.+.++... ...++.+.|+....+ ++ +++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHH
Confidence 4578999999999999999999999999987 6 456 66766654221 234577777765432 22 222
Q ss_pred HhcCCceeeccCCccCCCCCCCceeccccceE--EEecCCEEeEec--chHHHHHhccCC---eEEEEcChHHHHHHHH
Q 023106 172 LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV--VIVDGNYLFLDG--GVWKDVSSMFDE---KWFIEVDLDTAMQRVL 243 (287)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv--~I~~p~lLllDE--~~~~~l~~~~~~---~i~vtHd~~~~~~rvi 243 (287)
+.+....+ |-.++.+ .+..|.++|||= .....+.+.+.. +++++||++.+..|+.
T Consensus 87 ~~~~~~~y-----------------g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~ 148 (219)
T 1s96_A 87 AEVFGNYY-----------------GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLR 148 (219)
T ss_dssp EEETTEEE-----------------EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHH
T ss_pred HHHHhccC-----------------CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHH
Confidence 22211111 1011111 124467777773 334444444433 3588899999987764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-15 Score=135.40 Aligned_cols=143 Identities=9% Similarity=0.038 Sum_probs=56.5
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCcceeeCCCCHHHHhhhCCCCCC
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQDPKEAHARRGAPWT 159 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl-l~~~~p~~Gi~~~g~~~~~~~~~~~~~~~ 159 (287)
+||++.|+++. ++++++|+| +|+|+||+|||||+++|.|. +. |++|+.++|.++........+...
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence 47899998877 999999987 99999999999999999997 66 888866666544221111112222
Q ss_pred CChhH---HHHHHHHHhcCCceee-ccCCc------cCCCCCCCceeccccceEEEecC-CEEeEecch--------HHH
Q 023106 160 FNPLL---LLNCLKNLRNQGSVYA-PSFDH------GVGDPVEDDILVGLQHKVVIVDG-NYLFLDGGV--------WKD 220 (287)
Q Consensus 160 ~~~~~---~~tv~e~l~~~~~~~~-~~~~~------~~~~~~~~~LSgGekqRv~I~~p-~lLllDE~~--------~~~ 220 (287)
++... .++++++..++..... ..+.. ...+.++.++|||+|||+.+... .++++||+. .+.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~ 148 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAF 148 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHH
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHH
Confidence 22111 1233333332211100 00000 00124677899999999876322 288888831 233
Q ss_pred HHhccCC----eEEEEcChH
Q 023106 221 VSSMFDE----KWFIEVDLD 236 (287)
Q Consensus 221 l~~~~~~----~i~vtHd~~ 236 (287)
+..+... .|+.+||+.
T Consensus 149 l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhcCCEEEEEEeCCCC
Confidence 4444332 236679974
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=141.34 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=78.5
Q ss_pred EEEecC-----chhhh-hhhhhccccccccccccCC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeC
Q 023106 77 VVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (287)
Q Consensus 77 ~i~~~~-----l~~~y-~~~~~~~~~l~~vsl~i~~-------GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~ 143 (287)
+|++++ |++.| ++.. +++|++|++.+ |++++|+||||||||||+|+| |++. +..
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~a----- 816 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VMA----- 816 (1022)
T ss_dssp CEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HHH-----
T ss_pred eEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HHh-----
Confidence 689999 99999 4444 89999999987 999999999999999999999 9886 311
Q ss_pred CCCHHHHhhhCCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec---
Q 023106 144 SQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG--- 215 (287)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE--- 215 (287)
..| .++++....+++.+++.. .... ..........+|+++++ +++ .+|.++||||
T Consensus 817 ---------qiG-~~Vpq~~~~l~v~d~I~~-----rig~-~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~ 879 (1022)
T 2o8b_B 817 ---------QMG-CYVPAEVCRLTPIDRVFT-----RLGA-SDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGR 879 (1022)
T ss_dssp ---------TTT-CCEESSEEEECCCSBEEE-----ECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTT
T ss_pred ---------hee-EEeccCcCCCCHHHHHHH-----HcCC-HHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCC
Confidence 001 022222111122222211 0000 01111234567777665 333 7899999999
Q ss_pred ---------chHHHHHhccC----CeEEEEcChHHHHH
Q 023106 216 ---------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ---------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.++..+..+.+ .++|+||+++++..
T Consensus 880 Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 880 GTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 13444555432 25799999999875
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-13 Score=126.71 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=31.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++++++++.+| +++|+||||||||||+.+|+..+.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 566788999999 788999999999999999997754
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-13 Score=139.15 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=67.9
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.+++|+||+ |++++|+||||||||||+|+|+|+.. .+..|..+... ...++..++....+++.++
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~vpa~-------~~~i~~v~~i~~~~~~~d~--- 631 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFVPAE-------EAHLPLFDGIYTRIGASDD--- 631 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCBSSS-------EEEECCCSEEEEECCC------
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCceeehh-------ccceeeHHHhhccCCHHHH---
Confidence 388999999 99999999999999999999999863 04556222110 0112222221111122222
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEE-------ecCCEEeEecc---------------hHHHHHhccCCeEEEE
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-------VDGNYLFLDGG---------------VWKDVSSMFDEKWFIE 232 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-------~~p~lLllDE~---------------~~~~l~~~~~~~i~vt 232 (287)
....+|+|+++++.+ .+|+++||||. +++.+.+.-..++++|
T Consensus 632 ----------------l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~T 695 (765)
T 1ewq_A 632 ----------------LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFAT 695 (765)
T ss_dssp -------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred ----------------HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 223356777766544 69999999993 2223333111257999
Q ss_pred cChHHH
Q 023106 233 VDLDTA 238 (287)
Q Consensus 233 Hd~~~~ 238 (287)
||.++.
T Consensus 696 H~~~l~ 701 (765)
T 1ewq_A 696 HYFELT 701 (765)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 998876
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.6e-13 Score=119.21 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=79.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH------HH---hhhCCCCCCCChh---HHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK------EA---HARRGAPWTFNPL---LLLNCLKNL 172 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~------~~---~~~~~~~~~~~~~---~~~tv~e~l 172 (287)
+|++++|+||||||||||+++|+|++. |++| +.+.|.++. .. ..+.++++.+|.. ...++.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 799999999999999999999999999 9999 888887642 11 1234566666643 236777777
Q ss_pred hcCCce--eeccCC-ccCCC---CCCCceeccccceEEE-----ecCC--EEeEec----chHHHHHhcc---C-CeEEE
Q 023106 173 RNQGSV--YAPSFD-HGVGD---PVEDDILVGLQHKVVI-----VDGN--YLFLDG----GVWKDVSSMF---D-EKWFI 231 (287)
Q Consensus 173 ~~~~~~--~~~~~~-~~~~~---~~~~~LSgGekqRv~I-----~~p~--lLllDE----~~~~~l~~~~---~-~~i~v 231 (287)
...... .....+ .+..+ ..+.+|| +||++| .+|. ++.||. .+++.+..+. . .++++
T Consensus 178 ~~~~~~~~d~~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iiv 254 (304)
T 1rj9_A 178 QAMKARGYDLLFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIV 254 (304)
T ss_dssp HHHHHHTCSEEEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHhCCCCEEEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 643110 000011 11111 2334454 677765 6787 788897 3444444432 2 35899
Q ss_pred EcChHH
Q 023106 232 EVDLDT 237 (287)
Q Consensus 232 tHd~~~ 237 (287)
||+...
T Consensus 255 Th~d~~ 260 (304)
T 1rj9_A 255 TKLDGT 260 (304)
T ss_dssp ECTTSS
T ss_pred ECCccc
Confidence 999654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-14 Score=142.08 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=71.6
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
.+++|++|++++|++++|+||||||||||+|+|+++.- .+..|..+.... .. ++........+.+.
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~aq~g~~vpa~~-----~~--i~~~d~i~~~ig~~----- 726 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--MAQIGSYVPAEE-----AT--IGIVDGIFTRMGAA----- 726 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--HHHHTCCBSSSE-----EE--EECCSEEEEEC--------
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--HhhcCccccchh-----hh--hhHHHHHHHhCChH-----
Confidence 38899999999999999999999999999999987643 011221111000 00 00000000000011
Q ss_pred CCceeeccCCccCCCCCCCceeccccceEEE----ecCCEEeEec-----------chH-HHHHhccC----CeEEEEcC
Q 023106 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI----VDGNYLFLDG-----------GVW-KDVSSMFD----EKWFIEVD 234 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I----~~p~lLllDE-----------~~~-~~l~~~~~----~~i~vtHd 234 (287)
+........+|+||++++.| .+|.++|||| .+. ..+..+.+ .++++|||
T Consensus 727 -----------d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 727 -----------DNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp ------------------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred -----------HHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 11123456789999999877 7899999999 222 33333322 25799999
Q ss_pred hHHHH
Q 023106 235 LDTAM 239 (287)
Q Consensus 235 ~~~~~ 239 (287)
++++.
T Consensus 796 ~el~~ 800 (918)
T 3thx_B 796 PPVCE 800 (918)
T ss_dssp GGGGG
T ss_pred HHHHH
Confidence 88764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-13 Score=134.56 Aligned_cols=144 Identities=11% Similarity=0.047 Sum_probs=73.2
Q ss_pred EEEecCchhhhhhhhhcccccccc----------ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-Ccc-eeeCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKA-SSFDS 144 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~v----------sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p-~~G-i~~~g 144 (287)
+++++||++.|+..... +|+.+ +++++. +||+||||||||||+++|+|++. | ++| +.++|
T Consensus 10 ~i~~~~l~~~~~~~~r~--ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRP--CIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHHH--HHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHHH--HHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 58899999999764311 33333 356654 99999999999999999999987 8 789 88888
Q ss_pred CCHHHH------hhhCCCCCCCChh---HHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE---ecCCEEe
Q 023106 145 QDPKEA------HARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI---VDGNYLF 212 (287)
Q Consensus 145 ~~~~~~------~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I---~~p~lLl 212 (287)
.++... ..+..+++.+|.. ...++.+++.......... . ..+|. +.-++.+ ..|+++|
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-~--------~~~s~-~~i~l~i~~~~~p~LlL 151 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-G--------MGISH-ELITLEISSRDVPDLTL 151 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-S--------SCCCS-CCEEEEEEESSSCCEEE
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-c--------cccch-HHHHHHhcCCCCCceeE
Confidence 764211 1112234444432 3378888886642221100 0 01111 1112222 6799999
Q ss_pred Eecc-----------------hHHHHHhccCC-----eEEEEcChHHH
Q 023106 213 LDGG-----------------VWKDVSSMFDE-----KWFIEVDLDTA 238 (287)
Q Consensus 213 lDE~-----------------~~~~l~~~~~~-----~i~vtHd~~~~ 238 (287)
+||+ +++.+.++... .++++||++.+
T Consensus 152 lDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 152 IDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp EECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred eeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 9994 34455554332 24889998855
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-13 Score=123.48 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=60.6
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK 148 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~ 148 (287)
|++|+++++++.|+... +|+++||++.+|++++|+|+||||||||+++|+|++. |++| +.+.|.++.
T Consensus 27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVDPS 94 (337)
T ss_dssp HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEECGG
T ss_pred HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEcCc
Confidence 45689999999998766 8999999999999999999999999999999999999 9888 878776653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-13 Score=112.33 Aligned_cols=165 Identities=16% Similarity=0.238 Sum_probs=78.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----HhhhCCCC-------CCCChhHHH-HHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE----AHARRGAP-------WTFNPLLLL-NCL 169 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~----~~~~~~~~-------~~~~~~~~~-tv~ 169 (287)
...+|.+++|+|+||||||||+++|++++. +.+| +.+.+.+... .....+.. ..++...+. .++
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~ 94 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLF 94 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHH
Confidence 467899999999999999999999999998 7777 6555443211 11111111 111211111 112
Q ss_pred HHHhcCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecch--HHHHHhccCCeEEEEcChHHHHHHHHHHHh
Q 023106 170 KNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV--WKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 170 e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~--~~~l~~~~~~~i~vtHd~~~~~~rvigr~i 247 (287)
.++..+.....+.++..... ... ..+.+..+.++|+|=.. ...+.++++..|+|+.+.+....|++.|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~- 165 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDT-----HSK---RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV- 165 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTE-----EEE---EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC-------------
T ss_pred HHHhcCCccccCceeccCCC-----CCC---ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC-
Confidence 22222222333333322100 000 11111233444444211 12244567778899999998888887765
Q ss_pred cCCCcHHHHHHHHHhcCccchh-hhccc--CCCCCEEEeCC
Q 023106 248 STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 285 (287)
Q Consensus 248 ~~G~~~~~~~~~~~~~~~~~~~-~i~~~--~~~ad~ii~~~ 285 (287)
+.+...+...+.|.++ |+.+. +..||+||+|.
T Consensus 166 ------~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 166 ------KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred ------HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 2233444445567666 65454 68999999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-12 Score=124.83 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=74.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCCHHHHhh-h
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDPKEAHA-R 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~~~~~~~-~ 153 (287)
.+++++++..|++... +| +..+.+|++++|+|+||||||||+++++|+.. +..+ +++.+++...... +
T Consensus 257 ~~~~~~l~~g~~~ld~---vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~~vi~~~~ee~~~~l~~~ 327 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDE---MC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---ANKERAILFAYEESRAQLLRN 327 (525)
T ss_dssp CCCCCEECCSCHHHHH---HT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEESSSCHHHHHHH
T ss_pred ccccceeecChHHHHH---Hh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCCCEEEEEEeCCHHHHHHH
Confidence 4567778777754221 33 34899999999999999999999999999998 7643 4555554322111 0
Q ss_pred -CCCCCCCChhHHHHHHHHHhcCCceeeccCCccCCCCCCCceeccccceEEE-----ecCCEEeEec
Q 023106 154 -RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG 215 (287)
Q Consensus 154 -~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE 215 (287)
.... .+. .+....+ .+ ...+..+..||+||+||+++ .+|+++++|.
T Consensus 328 ~~~~g--~~~------~~~~~~g-~~-------~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp 379 (525)
T 1tf7_A 328 AYSWG--MDF------EEMERQN-LL-------KIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDS 379 (525)
T ss_dssp HHTTS--CCH------HHHHHTT-SE-------EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHcC--CCH------HHHHhCC-CE-------EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 0111 110 0111111 11 12345678899999999988 7899999997
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-12 Score=114.04 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=40.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFD 143 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~ 143 (287)
+|+++++.+++|++++|+||||||||||++.|+|.+. +.+| +.+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~ 70 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLA 70 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEE
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEE
Confidence 7899999999999999999999999999999999998 8766 5443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-12 Score=119.39 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=52.0
Q ss_pred EecCchhh---hhhhhhccccc---------cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 79 EARCMDEV---YDALAQRLLPT---------SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 79 ~~~~l~~~---y~~~~~~~~~l---------~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++++. |+.... .+| +++||.+++|++++|+||||||||||+++|+|+++ |++| +.++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~--~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQ--ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHHH--HHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred CcCccccccccccchhH--HHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 57788877 753211 144 99999999999999999999999999999999999 9999 778764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-13 Score=126.86 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=37.6
Q ss_pred cccccccccCC--CeEEEEECCCCCCHHHHHHHHHHHhcccCCCc
Q 023106 96 PTSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (287)
Q Consensus 96 ~l~~vsl~i~~--GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~ 138 (287)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++ |++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~ 198 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTS 198 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEE
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCc
Confidence 45679999999 99999999999999999999999999 888
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-13 Score=116.79 Aligned_cols=117 Identities=17% Similarity=0.102 Sum_probs=65.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHHh-hhCCCCCCCChhHHHHHHHHHhcCCceeeccCCc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH 185 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~~-~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 185 (287)
|++++|+||||||||||+++|+|+++ ++|+.++|....... ....+++.++...- ...++. ...+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~----~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g--~~~~l~------~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK----SSGVPVDGFYTEEVRQGGRRIGFDVVTLSG--TRGPLS------RVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH----HTTCCCEEEECCEEETTSSEEEEEEEETTS--CEEEEE------ECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc----cCCEEEcCEecchhHhhhceEEEEEEeccc--ceehhh------cccccC
Confidence 78999999999999999999999985 345666664431110 01112222222100 000110 001110
Q ss_pred c------CCCCCCCceeccccceE---------EEecCCEEeEec---------chHHHHHhccC---CeEE--EE--cC
Q 023106 186 G------VGDPVEDDILVGLQHKV---------VIVDGNYLFLDG---------GVWKDVSSMFD---EKWF--IE--VD 234 (287)
Q Consensus 186 ~------~~~~~~~~LSgGekqRv---------~I~~p~lLllDE---------~~~~~l~~~~~---~~i~--vt--Hd 234 (287)
. ...++...+|+||++++ ...+|+++|+|| ..++.|.++.+ ..|+ ++ ||
T Consensus 69 ~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~ 148 (189)
T 2i3b_A 69 PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKG 148 (189)
T ss_dssp CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCS
T ss_pred CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCC
Confidence 0 12334556899888654 236899999999 34555665554 2343 34 88
Q ss_pred h
Q 023106 235 L 235 (287)
Q Consensus 235 ~ 235 (287)
.
T Consensus 149 ~ 149 (189)
T 2i3b_A 149 K 149 (189)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-12 Score=107.30 Aligned_cols=142 Identities=13% Similarity=0.003 Sum_probs=70.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC-CCCCCChhHHHHHHHHHhcCCcee-----
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG-APWTFNPLLLLNCLKNLRNQGSVY----- 179 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~-~~~~~~~~~~~tv~e~l~~~~~~~----- 179 (287)
|++++|+||||||||||+++|++ +..| +.++|.++.... ..+ ++.........++.+++.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMV-VGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTC-CTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhh-ccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999987 4467 777775442211 111 111111122245556554321110
Q ss_pred ---eccCCccCCCCCCCce--eccccceEEE-----------ecCCEEeEec----ch---HHHHHhccCC---eEEEEc
Q 023106 180 ---APSFDHGVGDPVEDDI--LVGLQHKVVI-----------VDGNYLFLDG----GV---WKDVSSMFDE---KWFIEV 233 (287)
Q Consensus 180 ---~~~~~~~~~~~~~~~L--SgGekqRv~I-----------~~p~lLllDE----~~---~~~l~~~~~~---~i~vtH 233 (287)
...+......+....+ |+|+++++.+ ..+....+|+ .. ++.+..+... .|.+||
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~~~~~~ii~tsh 154 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSH 154 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTTCCTTSEEECSS
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcCCCccEEEeCCC
Confidence 0000000000111234 8899988654 2333334443 11 4455544322 345678
Q ss_pred C-hHHHHH---HHH--HHHhcCCCcHHH
Q 023106 234 D-LDTAMQ---RVL--KRHISTGKPPDV 255 (287)
Q Consensus 234 d-~~~~~~---rvi--gr~i~~G~~~~~ 255 (287)
. ++.+.+ +++ |+++..|+++-+
T Consensus 155 ~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 155 LQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp SCGGGHHHHHHHHHHCGGGSCC------
T ss_pred CChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 7 555544 666 788888877654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-12 Score=131.29 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=33.0
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+++|++|++.+|++++|+||||||||||+|+|++.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999999999999999543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-12 Score=132.22 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=34.5
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 389999999 9999999999999999999999999853
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-11 Score=101.59 Aligned_cols=111 Identities=22% Similarity=0.143 Sum_probs=67.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhh-CCCCCCCChhH-HHHHHHHHhcCC---
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHAR-RGAPWTFNPLL-LLNCLKNLRNQG--- 176 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~-~~~~~~~~~~~-~~tv~e~l~~~~--- 176 (287)
.+++|++++|+||||||||||+++|+|. ++.| +.++|.++...... ...++.++... ..++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999996 4567 78888765432111 11344444322 256666654321
Q ss_pred -----ceeecc-C---Cc-c--CCCCCCCceeccccceEEE-----ecCCEEeEecchHH
Q 023106 177 -----SVYAPS-F---DH-G--VGDPVEDDILVGLQHKVVI-----VDGNYLFLDGGVWK 219 (287)
Q Consensus 177 -----~~~~~~-~---~~-~--~~~~~~~~LSgGekqRv~I-----~~p~lLllDE~~~~ 219 (287)
...... + .. . .....+..+|+|++|++++ .+|+++ +|....+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-ld~~~~~ 138 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL-SDPLVVA 138 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC-CCHHHHH
T ss_pred hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc-CCHHHHH
Confidence 111110 0 00 0 0133456799999999887 566665 5764333
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-11 Score=117.67 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=45.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+|+++||+|++ +++||+||||||||||+++|+|+++ |++| +.++|.++
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~ 67 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTTE 67 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTTS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEEc
Confidence 89999999999 9999999999999999999999999 9999 88999865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.2e-12 Score=111.02 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=49.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G-i~~~g~~~ 147 (287)
++++++|++. . +|+++| +++|++++|+||||||||||+++|+|+++ |+ +| +.++|.++
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI 64 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc
Confidence 4678888753 2 789998 89999999999999999999999999999 87 88 87877654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-11 Score=114.36 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=58.5
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---------HhhhCCCCCCCChh---
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---------AHARRGAPWTFNPL--- 163 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---------~~~~~~~~~~~~~~--- 163 (287)
-+++||++.+|++++|+|+||||||||+++|+|++. +++| +.+.|.+... ...+.++++.++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999999 8888 8887655311 11244566666543
Q ss_pred HHHHHHHHHhcC
Q 023106 164 LLLNCLKNLRNQ 175 (287)
Q Consensus 164 ~~~tv~e~l~~~ 175 (287)
...++.+++.+.
T Consensus 360 p~~tV~e~l~~a 371 (503)
T 2yhs_A 360 SASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 247888888764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-11 Score=108.74 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=68.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----------cc-e-eeCCCCHHH-Hh-hhCCCCCCCChhHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----------KA-S-SFDSQDPKE-AH-ARRGAPWTFNPLLLLNC 168 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~----------~G-i-~~~g~~~~~-~~-~~~~~~~~~~~~~~~tv 168 (287)
.+++|++++|+||||||||||++.|++.+. .. .+ + ++...+... .. +...+...++......+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~ 102 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAV 102 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhc
Confidence 477999999999999999999999999776 31 22 2 333332211 10 00001111222211222
Q ss_pred HHHHhcCCceeeccCCccCCCCCCCceeccccceEEE--ecCCEEeEec----------------chHHHHHhccC---C
Q 023106 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI--VDGNYLFLDG----------------GVWKDVSSMFD---E 227 (287)
Q Consensus 169 ~e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I--~~p~lLllDE----------------~~~~~l~~~~~---~ 227 (287)
.+++.+. ...++.+..||+|+.+++.- .+|+++++|| .++..|..+.+ .
T Consensus 103 ~~~l~l~----------~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~ 172 (279)
T 1nlf_A 103 ADGLLIQ----------PLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGC 172 (279)
T ss_dssp HHHEEEC----------CCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCceEEe----------ecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCC
Confidence 3333211 11234677899999887643 6899999999 12233333322 2
Q ss_pred -eEEEEcChHHHH
Q 023106 228 -KWFIEVDLDTAM 239 (287)
Q Consensus 228 -~i~vtHd~~~~~ 239 (287)
+|+++|+.....
T Consensus 173 tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 173 SIVFLHHASKGAA 185 (279)
T ss_dssp EEEEEEEC-----
T ss_pred EEEEEecCCCccc
Confidence 469999987663
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-11 Score=112.78 Aligned_cols=129 Identities=11% Similarity=0.082 Sum_probs=79.1
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH---------HHhhhCCCCCCCChh---HHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK---------EAHARRGAPWTFNPL---LLLNCL 169 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~---------~~~~~~~~~~~~~~~---~~~tv~ 169 (287)
..++|++++|+||||||||||+++|+|++. |++| +.+.|.++. ....+.++++.++.. ...++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 447899999999999999999999999999 9999 888876641 112344554444432 337888
Q ss_pred HHHhcCCc----ee-eccCC-ccCCCCCCCceeccccceEEEecCCEEeEec----chHHHHHhcc---C-CeEEEEcCh
Q 023106 170 KNLRNQGS----VY-APSFD-HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF---D-EKWFIEVDL 235 (287)
Q Consensus 170 e~l~~~~~----~~-~~~~~-~~~~~~~~~~LSgGekqRv~I~~p~lLllDE----~~~~~l~~~~---~-~~i~vtHd~ 235 (287)
+++.++.. .. ..... .......+.+||+ -.|+...++.+++||. ++++.++.+. . .++++||.-
T Consensus 202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~--i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKK--IARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHH--HHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHhccchhhHHhhccchhHHHHHHHHHHH--HHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 88865421 10 00000 0112234445553 2233346778999998 3344444332 2 357999954
Q ss_pred H
Q 023106 236 D 236 (287)
Q Consensus 236 ~ 236 (287)
.
T Consensus 280 ~ 280 (328)
T 3e70_C 280 A 280 (328)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-12 Score=123.38 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=38.4
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+++||++.|++.. ++++++|+| +|+|+||||||||+++|+|...
T Consensus 11 ~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 11 YVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 699999999998776 999999997 9999999999999999999876
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-11 Score=113.34 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=31.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA 139 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G 139 (287)
.+.+|++++|+||||||||||+++|+|+++ |+ +|
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~ 153 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYH 153 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCC
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCc
Confidence 678899999999999999999999999998 87 45
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-11 Score=102.92 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=39.8
Q ss_pred ccccccc-ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl-~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.|+++.+ .+++|++++|+||||||||||++.|++.+. +.+| +.+.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~~ 59 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVTT 59 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEES
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEEc
Confidence 6788887 899999999999999999999999999887 6666 555443
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-11 Score=101.64 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=35.8
Q ss_pred cEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+|+++|+++.|+. . ++++ |.+.+|.+++|+|+||||||||++.|+|..
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999973 3 7777 899999999999999999999999999987
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.8e-11 Score=104.57 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=36.8
Q ss_pred cEEEecCc-hhhh-hhhhhccccccccccccCC---CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 76 ~~i~~~~l-~~~y-~~~~~~~~~l~~vsl~i~~---GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|+++|| ++.| ++.. +|+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 37999999 9999 5554 89999999999 99999999999999999999999776
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-10 Score=109.36 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=53.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.++++++++.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ |++| |.+.+.++
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSC
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccc
Confidence 477889998888766 88888 54 8999999999999999999999999999 8888 77766543
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.2e-11 Score=109.03 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=38.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G-i~~~g~~ 146 (287)
+|++++ +.+|++++|+||||||||||+++|+|+++ |+ +| +.+.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDP 174 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEESS
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEeccc
Confidence 456554 88999999999999999999999999998 87 78 6555543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.3e-12 Score=114.19 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=52.8
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCC-------eEEEEECCCCCCHHHHHHHHHHHhccc-CCCcc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~G-------eivgIiGpNGsGKSTLlk~L~Gll~~~-~p~~G-i~~~g~~~ 147 (287)
+++.+++++.|++.. +++++++.+..| +.++|+||||+|||||+++|+|.+... .+.+| +...+.++
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH
Confidence 367788999998766 889999999876 899999999999999999999998311 05666 55444443
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-09 Score=90.25 Aligned_cols=172 Identities=26% Similarity=0.421 Sum_probs=98.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccC----------CCcceeeCCCCHHH-HhhhCC-----CCCCCChhHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW----------PQKASSFDSQDPKE-AHARRG-----APWTFNPLLLLNCL 169 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~----------p~~Gi~~~g~~~~~-~~~~~~-----~~~~~~~~~~~tv~ 169 (287)
+..+|||.|+.||||||+.+.|+..+...+ .+.+-++....... .+...+ .+..++...+...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~L 100 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL 100 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHHH
Confidence 456899999999999999999988664110 01111111111111 111122 12334444446677
Q ss_pred HHHhcCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHHHHHHHHHh-c
Q 023106 170 KNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-S 248 (287)
Q Consensus 170 e~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i-~ 248 (287)
+.+..+.....+.|+.....+....+.- ....+.|.++.+++.+ ..+.+.++.+|+++.+.+....|+..|.. .
T Consensus 101 ~~l~~~~~v~~~~~d~~~~~~~~~~~~~-~~~~~vIveG~~~~~~----~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~ 175 (252)
T 1uj2_A 101 KEITEGKTVQIPVYDFVSHSRKEETVTV-YPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISE 175 (252)
T ss_dssp HHHHTTCCEEEEEEETTTTEEEEEEEEE-CCCSEEEEECTTTTSS----HHHHHHCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeeecCccccccccCCCceeee-CCCcEEEEeeeccccC----HHHHHhcCeeEEEeCCHHHHHHHHHHHHHhh
Confidence 7776655555555543322111100100 0123444444433322 34556677789999999999988887643 4
Q ss_pred CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEE
Q 023106 249 TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 282 (287)
Q Consensus 249 ~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii 282 (287)
.|...+.+...+...+.+.+. ++.+.+..||++|
T Consensus 176 rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 176 RGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp SCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred hCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 576666666666666655555 7788888999999
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-10 Score=98.20 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHH-HHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~-Gll~ 132 (287)
..+++||++++|+++||+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 568999999999999999999999999999999 9985
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-10 Score=103.76 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=36.5
Q ss_pred CCCCCceeccccceEE------E-----ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHH
Q 023106 189 DPVEDDILVGLQHKVV------I-----VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~------I-----~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
++.+..|||||||||. + .+|++||||| .+++.|.++.. .++++|||.+.
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 4678899999999653 3 5899999999 34556655543 25799999764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-11 Score=110.90 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=63.7
Q ss_pred ccccc-ccccCCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCc----c--eeeCCCCH---HH-HhhhCCCCCCCCh
Q 023106 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----A--SSFDSQDP---KE-AHARRGAPWTFNP 162 (287)
Q Consensus 96 ~l~~v-sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll--~~~~p~~----G--i~~~g~~~---~~-~~~~~~~~~~~~~ 162 (287)
.|+.+ ++.|++|++++|+||||||||||++.|++.. + |+. | +++++.+. .. ....+... ++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~--~~~ 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG--LDP 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT--CCH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC--CCH
Confidence 35554 6899999999999999999999999999998 4 554 4 67787653 11 11111111 111
Q ss_pred hHHHHHHHHHhcCCceeeccCC--ccCCCCCCCceeccccceEEEecCCEEeEec
Q 023106 163 LLLLNCLKNLRNQGSVYAPSFD--HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 163 ~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~~LSgGekqRv~I~~p~lLllDE 215 (287)
.++++|+.+.......... -......+.++|+|| .+|+++++||
T Consensus 194 ---~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~------~~~~llIlDs 239 (349)
T 1pzn_A 194 ---DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD------RPVKLLIVDS 239 (349)
T ss_dssp ---HHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSS------SCEEEEEEET
T ss_pred ---HHHhhCEEEEecCChHHHHHHHHHHHHHHHHhcccc------CCCCEEEEeC
Confidence 2556665543211000000 001122455678887 5789999999
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.4e-10 Score=98.80 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=92.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC---CHHHHh-------h----hCCC--CCCCChhHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ---DPKEAH-------A----RRGA--PWTFNPLLLLNC 168 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~---~~~~~~-------~----~~~~--~~~~~~~~~~tv 168 (287)
++-+|||.|++||||||+.+.|+..+.......- +..|+. +..... . .... +..++...+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 4568999999999999999999886541000000 111211 121110 0 1111 233443333444
Q ss_pred HHHHhcCCceeeccCCcc-----CCCCCCCce----eccccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHH
Q 023106 169 LKNLRNQGSVYAPSFDHG-----VGDPVEDDI----LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 169 ~e~l~~~~~~~~~~~~~~-----~~~~~~~~L----SgGekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
+..+..+.....+.|... ........+ ...+...+.|.++.++++.. ....+...++..|+|+.+.+...
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHHhCCEEEEEECCHHHHH
Confidence 455554444444444221 111111111 01111234444444433110 01234566777899999999999
Q ss_pred HHHHHHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCE------EEeCCC
Q 023106 240 QRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSID 286 (287)
Q Consensus 240 ~rvigr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~------ii~~~~ 286 (287)
.|++.|.+. +|...+.+...+... .+.+. |+.|.+..||+ +|++++
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 888877654 676555444555555 66665 99999999999 777654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-10 Score=107.38 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=40.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeE--EEEECCCCCCHHHHHHHHHHHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~Gei--vgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|++++ ++.|++. .|+++||++++|++ +||+||||||||||+++|+|+.
T Consensus 16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 477888 8999763 28999999999999 9999999999999999999974
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-10 Score=94.36 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=38.0
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++..|..... +|.+ -|++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~i~tG~~~LD~---~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 2 ATIGRISTGSKSLDK---LLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp CCCCEECCSCHHHHH---HTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcCCccCCCChhHHh---HhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456667766654321 3432 688999999999999999999999999765
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=90.14 Aligned_cols=38 Identities=37% Similarity=0.407 Sum_probs=25.9
Q ss_pred ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 95 ~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||++.+|.+++|+|++||||||+.+.|++.+.
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 37899999999999999999999999999999999875
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-10 Score=92.14 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=29.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCC---cc-eeeCCCC
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KA-SSFDSQD 146 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~~~p~---~G-i~~~g~~ 146 (287)
++++|+|+||||||||+++|+|++. |+ .| +.++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcc
Confidence 5899999999999999999999999 87 78 7888876
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-09 Score=91.75 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=26.6
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|+++.+|+++||+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56788999999999999999999999999863
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=95.13 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=34.1
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcC--CCcHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCCC
Q 023106 226 DEKWFIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 286 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rvigr~i~~--G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 286 (287)
+..||++.+.+...+|+..+.... +...+.+...+...+..... .+.|.+..+| ++|++++
T Consensus 164 ~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 164 PVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 446899999999988877544433 33444444444444444443 6778888888 8888763
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-10 Score=101.25 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=41.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.|+++|++..|+. ++++.+ ++++|+||||||||||+++|+|++. |++| +.++|.++
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC-------
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEEc
Confidence 5889998776532 344445 8999999999999999999999999 9999 88888765
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-09 Score=84.37 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=29.1
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55655 899999999999999999999999997
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-09 Score=90.62 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=42.6
Q ss_pred cCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e--eeCCCCH
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S--SFDSQDP 147 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i--~~~g~~~ 147 (287)
+|++..++... +.+..++..++|++++|+||||||||||+++|++.+. ..| + +++|.++
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~----~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY----QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCceEEEecCchh
Confidence 45666665544 6678888899999999999999999999999999985 345 4 6776543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-09 Score=103.95 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=43.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
+++++++.+++|++++|+||||||||||+++|+|+++ |+.| +.+.|.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~ 296 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCc
Confidence 6789999999999999999999999999999999999 9999 677664
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=84.21 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=34.3
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+++++++.+| +.+|+||||||||||+++|.+++. +..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcc
Confidence 5778889899 999999999999999999999998 7655
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.69 E-value=9.1e-09 Score=93.08 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=38.3
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++...+|++++|+|+|||||||++..|++.+. +.+| +.+.+.+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D 141 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAAD 141 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccc
Confidence 4567778999999999999999999999999998 7777 6665544
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-09 Score=97.62 Aligned_cols=47 Identities=23% Similarity=0.214 Sum_probs=32.2
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeC-CCC
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQD 146 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~-g~~ 146 (287)
++++++.+ +|++++|+||||||||||+++|+|++.. +..| +.+. |..
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g 254 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLG 254 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC---------
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCC
Confidence 45566544 7999999999999999999999998631 4567 6654 543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-08 Score=84.59 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.5
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+++.+|++++|+||||||||||+++|++++. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 4678999999999999999999999999986 6555
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-08 Score=88.79 Aligned_cols=45 Identities=33% Similarity=0.375 Sum_probs=39.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+++++++.+++| ++|+||||||||||+++|+|.+. + + +.++|.++
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~l 80 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPEL 80 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTTT
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHHH
Confidence 789999999999 99999999999999999999987 5 5 67777654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.6e-09 Score=92.55 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=31.2
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee---CCCCH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF---DSQDP 147 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~---~g~~~ 147 (287)
|++..|++++|+||||||||||+++|+|++. |+.| +.+ +|.++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------C
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCc
Confidence 4566899999999999999999999999999 9999 777 67654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-08 Score=84.51 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|.+++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999999875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-08 Score=87.67 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=47.9
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++.+.|+... +++++++++++| ++|+||||+|||||+++|++.+. .| +.+++.+
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~ 84 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 84 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHH
Confidence 45778888887655 899999999999 89999999999999999999874 45 5565543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-08 Score=92.70 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=51.3
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +..+
T Consensus 28 i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~ 85 (341)
T 2p67_A 28 MTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGL 85 (341)
T ss_dssp HHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTC
T ss_pred hhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCC
Confidence 34688889999998776 8899999999999999999999999999999999987 5555
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-09 Score=92.96 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=27.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+++|+||+||||||++++|++.+...+++.|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g 37 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSG 37 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 568999999999999999999998732226666
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-08 Score=88.54 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=48.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++.+.|+... +++++++.+++| ++|+||||+|||||+++|++.+. .| +.+++.+
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~ 108 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 108 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHH
Confidence 44678888887665 899999999999 89999999999999999999874 45 5666543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-08 Score=99.70 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=50.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCc-c-eeeCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-SSFDSQ 145 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~-G-i~~~g~ 145 (287)
+.-++++..||... +++++++.+..|+.++|+||||+|||||+++|+++++ +.. | +.+.+.
T Consensus 35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~ 97 (604)
T 3k1j_A 35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPN 97 (604)
T ss_dssp CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECC
T ss_pred ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCC
Confidence 33456677787766 8899999999999999999999999999999999998 776 4 555544
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-08 Score=91.90 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=27.1
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee---CCCC
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF---DSQD 146 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~---~g~~ 146 (287)
+++.+|++++|+||||+|||||+++|+|++. +..| +.+ .|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKH 213 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcc
Confidence 7888999999999999999999999999998 8888 766 5554
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.7e-08 Score=80.72 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.2
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+|.+.+|+.++|+||||+|||||+++|++.+. +..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 46677899999999999999999999999997 6666
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-08 Score=88.08 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=32.3
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee---CCCCH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF---DSQDP 147 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~---~g~~~ 147 (287)
+++..|++++|+||||||||||+++|+ ++. |+.| +.+ +|.++
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHT 205 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------C
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCc
Confidence 355679999999999999999999999 988 9999 877 77654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-07 Score=84.46 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCcc-eeeCCCCH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G-ll~~~~p~~G-i~~~g~~~ 147 (287)
.+.|.||||+|||||+++|++ ++. |+.| +.++|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQF 75 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceee
Confidence 389999999999999999999 667 7778 77776543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=78.79 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|++++|+||||||||||+++|++.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999875
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-07 Score=85.40 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=48.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
+.++++++.|+.. .++++|+ +|++++|+|+||+||||++..|++++. +..| +.+.+.++
T Consensus 77 ~~~~~l~~~~~~~------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGE------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSS------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCC------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCc
Confidence 4567788888642 1678888 999999999999999999999999998 7777 77766554
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-07 Score=79.21 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=74.6
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcceeeCCCCHHHH--hhhCCCCCCCChhHH---HHHHHHHhcC
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEA--HARRGAPWTFNPLLL---LNCLKNLRNQ 175 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~~g~~~~~~--~~~~~~~~~~~~~~~---~tv~e~l~~~ 175 (287)
.+...+|++++|+||||||||||+++|++.+. -+.+++.++... ......+..++.... +++++++...
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g------~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG------LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHC------CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 35667899999999999999999999999862 155666543211 111113445555432 4555554321
Q ss_pred CceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecchHHHHHhccCC--eEEEEcChHHHHHHHHHHHhcCCCcH
Q 023106 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--KWFIEVDLDTAMQRVLKRHISTGKPP 253 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~~~~l~~~~~~--~i~vtHd~~~~~~rvigr~i~~G~~~ 253 (287)
. +..| ..+.+..+ ++.+...+.+.++... .|+++.+.+.+.+|+..|.-. ..+.
T Consensus 97 ~------------------~~~g--~~viid~~---~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~-~~~~ 152 (200)
T 4eun_A 97 R------------------ADAG--VSTIITCS---ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGH-FMPA 152 (200)
T ss_dssp H------------------HHTT--CCEEEEEC---CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCC-SSCG
T ss_pred H------------------HhcC--CCEEEEch---hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccC-CCCH
Confidence 0 0001 11222111 1223333444443322 468899998888777543211 1123
Q ss_pred HHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 254 DVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 254 ~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
+.+...+.... ..+...+|++|++.
T Consensus 153 ~~l~~~~~~~~-------~~~~~~~~~~Id~~ 177 (200)
T 4eun_A 153 SLLQSQLATLE-------ALEPDESGIVLDLR 177 (200)
T ss_dssp GGHHHHHHHCC-------CCCTTSCEEEEETT
T ss_pred HHHHHHHHHhC-------CCCCCCCeEEEECC
Confidence 34444333221 22234478888763
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-07 Score=85.02 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=41.3
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
.+++|++.+|++++|+|+||+||||++..|++.+. +.+| +.+.+.++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCC
Confidence 68999999999999999999999999999999998 7777 66655543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.6e-08 Score=88.17 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+++++|++.+| +++|+||||||||||+++|.++.
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 678999999999 99999999999999999999843
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-08 Score=85.87 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCcc-eeeCC
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKA-SSFDS 144 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~---Gll~~~~p~~G-i~~~g 144 (287)
++++++|+||||||||||+++|+ |+.. ++.| +.++|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHH
Confidence 47899999999999999999999 8777 8888 65554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-07 Score=87.36 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=34.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++++++.+++|++++|+||||||||||+++|+|.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 7899999999999999999999999999999999653
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-07 Score=86.93 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=38.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-|+++|+ +.|++.. . +++.+|++++|+||||||||||+++|.+++.
T Consensus 6 ~l~~~~~-~~~~~~~-------~--~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT-------K--VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSEE-------E--EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCce-------e--EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3788999 7886421 2 4467899999999999999999999999886
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-07 Score=78.46 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=33.8
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH--hcccCC-----Ccc-eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWP-----QKA-SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl--l~~~~p-----~~G-i~~~g~~ 146 (287)
-+++|++++|+||||||||||++.|++. ++ + ..| +++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcCCCCCeEEEEECCC
Confidence 4779999999999999999999999994 44 4 455 6777765
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.3e-07 Score=77.74 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|++++|+||||||||||+++|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999986
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.4e-06 Score=68.58 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+++|+|++|||||||++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-07 Score=88.62 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=37.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--ee-eCCCCHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SS-FDSQDPK 148 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~-~~g~~~~ 148 (287)
.+.+|++++|+|+||||||||+++|++.+. |++| +. ++|.++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESSHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECCcHHH
Confidence 678999999999999999999999999999 8886 64 7776553
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-07 Score=88.81 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=50.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDS 144 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g 144 (287)
+-++++.+.|+... ++.++++++ +|.+++|+||||+|||||+++|++.+. +..| +.+.|
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~ 143 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGG 143 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEecc
Confidence 44678888887766 788999999 899999999999999999999999998 7766 55555
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-07 Score=83.14 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=31.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc-----cCCCcc-eeeCCCC
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKA-SSFDSQD 146 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~-----~~p~~G-i~~~g~~ 146 (287)
++++|+|+||||||||++.|+|+... ..|+.| +.++|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 58999999999999999999998610 017888 7777753
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-07 Score=78.79 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=33.9
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCH
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDP 147 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~ 147 (287)
-+...++|++++|.|+||||||||+++|+|+ .| +.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4456789999999999999999999999885 35 77777664
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=7.3e-07 Score=72.96 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+|++++|+|+||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999999975
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-07 Score=72.68 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|.+++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999876
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.6e-07 Score=75.19 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=35.7
Q ss_pred ccccccc-ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 96 ~l~~vsl-~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
.|+.+.. .+++|++++|+||||||||||++.|++ . +..+ ++++..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECC
Confidence 4566654 689999999999999999999999999 4 4445 555544
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-07 Score=86.38 Aligned_cols=34 Identities=38% Similarity=0.455 Sum_probs=32.3
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
++++|+++.|++++|+|+||||||||+++|+|..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 5899999999999999999999999999999983
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=74.09 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=26.6
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+...+|.+++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4455899999999999999999999999865
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=81.62 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=33.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHH------------HhcccCCCcc-eeeCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~G------------ll~~~~p~~G-i~~~g~ 145 (287)
.+.+|.++||+|+||||||||+++|+| ... |+.| +.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCCc
Confidence 567899999999999999999999999 333 7788 667664
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-06 Score=68.34 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.9
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.+| +.+|+|||||||||++.+|.-.+.
T Consensus 18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445444 889999999999999999986653
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.10 E-value=9.7e-07 Score=81.87 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred EEEecCchhhhhhhhhcccccc--------------ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~--------------~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+.++||+..|.... ..|+ |+.+.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 378999999997532 2677 8999999999999999999999999999999875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-06 Score=73.04 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=28.4
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+--++.+|.+++|+|++|||||||+++|++.+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 33467789999999999999999999999976
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-07 Score=95.34 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=53.7
Q ss_pred CCCCCCceeccccceEEE-----ecCC--EEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH--HHH-
Q 023106 188 GDPVEDDILVGLQHKVVI-----VDGN--YLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~p~--lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~--rvi- 243 (287)
.++.+.+|||||+|||.| .+|+ +||||| .+++.|+++.+. +|+||||++++.. |++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~ 537 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIID 537 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 467899999999999999 4454 999999 456666666553 5799999998765 433
Q ss_pred ---------HHHhcCCCcHHHHH
Q 023106 244 ---------KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~~ 257 (287)
|++++.|+++++..
T Consensus 538 lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 538 IGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EESSSGGGCSEEEEEECHHHHHH
T ss_pred EcCCcccCCCEEEEeechhhhhc
Confidence 46778899888753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-06 Score=76.88 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCC
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQD 146 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~ 146 (287)
.+|++++|+|+||+||||++..|++.+. ++.| +.+.+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcCCEEEEEecC
Confidence 4799999999999999999999999998 7677 4444433
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-06 Score=77.16 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=44.8
Q ss_pred ecCchhhhhhhhhccccccc-cccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~-vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++.+.|++.. .+ ++++.+ |.+++++|+||+||||++..|++.+. +..+ +.+.+.+
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D 135 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 456777776532 46 888876 99999999999999999999999998 7666 6554444
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.3e-06 Score=72.13 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.7
Q ss_pred ccccccccC---CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~---~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566666665 999999999999999999999999998
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-06 Score=70.97 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.++|+|+||||||||++.++|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999865
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-06 Score=82.75 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=46.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.+++++.+.|.+.. +++++++.+++| +.|+||||+|||||+++|++... .+ +.+++.+
T Consensus 41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 45666777776554 789999999999 89999999999999999999864 44 5566543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.7e-06 Score=79.18 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=44.7
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
.++|++.|+... .+++|+ +|.+++|+|+|||||||++..|++.+. +..+ +.+.+.+
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D 135 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeecc
Confidence 456777776531 577887 899999999999999999999999998 7766 6655544
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=6.5e-07 Score=72.31 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=37.4
Q ss_pred CCCCCceeccccceEEE-----------ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChH
Q 023106 189 DPVEDDILVGLQHKVVI-----------VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I-----------~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~ 236 (287)
++.+.+||||||||++| .+|+++|||| .+++.+.++.. .++++|||++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 56789999999999964 6899999999 45556665543 2569999985
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.5e-06 Score=68.59 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3699999999999999999999999987
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-06 Score=82.79 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=36.3
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
|.++|+. .++++++++.+| +.+|+|+||||||||+.+|..++
T Consensus 43 L~i~nf~-----------~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 43 LEIRNLA-----------TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp EEEESBT-----------TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeccccc-----------ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 7777743 567889999999 99999999999999999998873
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-06 Score=77.91 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=40.9
Q ss_pred cCchhhhhhhhhccccccccccccCCCeE--EEEECCCCCCHHHHHHHHHHHhc
Q 023106 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 81 ~~l~~~y~~~~~~~~~l~~vsl~i~~Gei--vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++..||... +++.++..+..|++ +.|.||+|+||||+++++++.+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 45566666655 78888888999988 99999999999999999999987
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=5e-06 Score=76.30 Aligned_cols=38 Identities=34% Similarity=0.465 Sum_probs=31.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCC
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQ 145 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~ 145 (287)
..+.+++|+|++|||||||++.|+|.+. +..| +.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEEEee
Confidence 3588999999999999999999999987 7666 544443
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.8e-06 Score=70.41 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=33.5
Q ss_pred ccccc-ccccCCCeEEEEECCCCCCHHHHHHHH-HHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~v-sl~i~~GeivgIiGpNGsGKSTLlk~L-~Gll~~~~p~~G-i~~~g~~ 146 (287)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+ ...+ +++....
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 34554 556889999999999999999996544 55544 4344 4555543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=6.7e-06 Score=68.46 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+||||||||++.|+|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999974
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-05 Score=66.38 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=32.8
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-e-eeCC
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDS 144 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i-~~~g 144 (287)
.+...+|.++.|+|++||||||+++.|++.+. +..+ + ++++
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~---~~~~~~~~~~~ 49 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ---KEGYRVEVLDG 49 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEeeH
Confidence 34556899999999999999999999999987 6555 3 3443
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=97.85 E-value=4.4e-07 Score=92.81 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=51.9
Q ss_pred CCCCCCceeccccceEEE-----ec--CCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH-
Q 023106 188 GDPVEDDILVGLQHKVVI-----VD--GNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I-----~~--p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi- 243 (287)
.++.+.+|||||+|||.| .+ |.++|||| .+++.|+++.+ .+|+|+||++++.. |++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 577 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 577 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 467899999999999999 44 69999999 45555555544 35799999998754 433
Q ss_pred ---------HHHhcCCCcHHHH
Q 023106 244 ---------KRHISTGKPPDVA 256 (287)
Q Consensus 244 ---------gr~i~~G~~~~~~ 256 (287)
|++++.|+++++.
T Consensus 578 LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp ECSSSGGGCCSEEEEECTTTTT
T ss_pred eCCCccCCCCEEEEecCHHHHH
Confidence 4677788887764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=6e-06 Score=69.83 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.8
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
+.+.+|.++.|+|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 5577899999999999999999999999997 6777
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=66.76 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.8
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999886
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=7.2e-06 Score=75.25 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=33.9
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
++++.+.|+... ...+|++++++++ .|+|+|++|||||||++.|+|
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHT
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhC
Confidence 567777776421 1227899999998 899999999999999999999
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.8e-05 Score=66.84 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.7
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444555 5899999999999999999987665
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=8.7e-06 Score=68.31 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=34.3
Q ss_pred HhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCCC
Q 023106 222 SSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286 (287)
Q Consensus 222 ~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 286 (287)
...++.+|+++.+.+...+|+..|. |.+.+.+...+.. ..+... .+..||++|++..
T Consensus 121 ~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~----~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 121 TALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQE----RLKWADDVINNDA 177 (206)
T ss_dssp GGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHH----HHHHCSEEEECCS
T ss_pred HhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHH----HHHhCCEEEECCC
Confidence 4556778899999999988887653 5555555555443 223222 2346899998753
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=67.32 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.3e-05 Score=67.37 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=7e-06 Score=75.66 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.+.++++.|+.+. ++++++|.| +|+|++|+|||||++.|.+..
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 588999999998876 788888876 999999999999999987753
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.2e-05 Score=75.09 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=31.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHH--HHhcccCCC-----cc-eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQ-----KA-SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~--Gll~~~~p~-----~G-i~~~g~~ 146 (287)
-|++|++++|+||||||||||++.|+ ++++ ++ .+ +++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccCCCCCcEEEEeCCC
Confidence 57899999999999999999999554 4444 32 23 6677764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.1e-05 Score=70.44 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=34.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCC
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQD 146 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~ 146 (287)
++.+.. ...++.++.|+|++||||||+.+.|+..+. .+ +++++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 445544 677899999999999999999999999764 23 4556543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.2e-05 Score=63.48 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999987654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.1e-05 Score=71.21 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=34.5
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~ 146 (287)
-+++|+++.|.||||||||||+..++.... +..| +++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccc
Confidence 467999999999999999999999999887 6666 4566653
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=4.2e-05 Score=65.79 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=40.5
Q ss_pred cCCeEEEEcChHHHHHHHHHHHhcCCC--cHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCC
Q 023106 225 FDEKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSI 285 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rvigr~i~~G~--~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~ 285 (287)
.+.+|+++.+.+....|++.+...+|. +.+.+...+..++.+... ++.|....+| ++|+++
T Consensus 153 ~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 153 AELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 455789999999999888766555552 444445555544555554 4566666666 888875
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=97.56 E-value=1.8e-05 Score=65.47 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=38.2
Q ss_pred CCCCCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHH
Q 023106 188 GDPVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTA 238 (287)
Q Consensus 188 ~~~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~ 238 (287)
..+.+..||||||||++| .+|+++|||| .+.+.|.++... .|+|||+....
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~ 130 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM 130 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence 456788999999999988 2368999999 455566655443 57999997654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=5.3e-05 Score=61.04 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998765
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.53 E-value=3.9e-05 Score=62.45 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+|..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999999864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.53 E-value=3.6e-05 Score=69.00 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++.+++|+|++|+|||||++.|.|..
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3456689999999999999999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=1.9e-05 Score=65.84 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=29.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+++++++..++.. ++|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 7889999988874 78999999999999999875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.46 E-value=7.3e-05 Score=64.83 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=26.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.++++.+++| +.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666666 88999999999999999999875
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.46 E-value=6e-05 Score=62.25 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=20.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 678888887776 6789999999999999999873
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=2e-05 Score=80.01 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=49.6
Q ss_pred CCCCCceeccccceEEE-----ecC--CEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH--HHH--
Q 023106 189 DPVEDDILVGLQHKVVI-----VDG--NYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL-- 243 (287)
Q Consensus 189 ~~~~~~LSgGekqRv~I-----~~p--~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~--rvi-- 243 (287)
++.+.+|||||+|||.| .+| .++|||| .+++.|+.+.+ .+|+|+||++++.. |++
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDV 453 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence 67889999999999998 555 5999999 34444444443 35799999997643 333
Q ss_pred --------HHHhcCCCcHHHH
Q 023106 244 --------KRHISTGKPPDVA 256 (287)
Q Consensus 244 --------gr~i~~G~~~~~~ 256 (287)
|++++.|+++++.
T Consensus 454 gpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 454 GPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CSSSGGGCCSEEEEECGGGGG
T ss_pred CCCcccCCCEEEEecCHHHHH
Confidence 4567778877764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.41 E-value=8.9e-05 Score=61.26 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999876
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=9.7e-05 Score=60.08 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.38 E-value=3.5e-05 Score=74.19 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=40.1
Q ss_pred CCCCCce-eccccceEEE-----ecC--CEEeEec-----------chHHHHHhccC--CeEEEEcChHHHHH
Q 023106 189 DPVEDDI-LVGLQHKVVI-----VDG--NYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 189 ~~~~~~L-SgGekqRv~I-----~~p--~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
.+.+..| ||||+|||+| .+| ++||||| .+.+.|.++.+ .+|+||||++.+..
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 4567888 9999999988 788 9999999 34555555432 35799999997754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=60.20 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999987654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=61.84 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
++-+++|+|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=60.14 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998765
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=3.8e-05 Score=68.25 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
...+.|.||+|+|||||++.|++.+. +..+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~---~~~~ 76 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF---DTEE 76 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH---SCGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc---CCCc
Confidence 36899999999999999999999987 6655
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=7.9e-05 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=60.71 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999775
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=63.80 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998765
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.34 E-value=5.6e-05 Score=72.15 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=36.8
Q ss_pred ecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 80 ~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++...|.... .++++++.+++| +.|+||+|+|||||++.|++...
T Consensus 28 l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 28 LKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 444444454433 677888888888 77999999999999999999875
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=68.68 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5567889999999999999999999987
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=59.94 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998775
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=59.65 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.++.|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 44678899999999999999999987664
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=63.16 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=41.8
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCC--CcHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCCC
Q 023106 226 DEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 286 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rvigr~i~~G--~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~~ 286 (287)
+-.||++-+++...+|+..+....| ...+-+...+..++..... +..|.+...| ++|++++
T Consensus 147 ~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 147 DVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 3458999999999998886665443 3444455555556555554 6677777766 9998764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=67.00 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=35.8
Q ss_pred CCCCceeccccceEEE-----------ec-CCEEeEec-----------chHHHHHhccC--CeEEEEcChHH
Q 023106 190 PVEDDILVGLQHKVVI-----------VD-GNYLFLDG-----------GVWKDVSSMFD--EKWFIEVDLDT 237 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I-----------~~-p~lLllDE-----------~~~~~l~~~~~--~~i~vtHd~~~ 237 (287)
+.+..|||||+||++| .+ |+++|||| .+++.|.++.. .++++||+++.
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 3457899999999843 57 99999999 45566666433 35799999863
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00013 Score=58.52 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEV 127 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L 127 (287)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00019 Score=59.71 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+|+|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999999876
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=59.84 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+..+|+|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999874
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=97.25 E-value=9.4e-05 Score=70.02 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=33.9
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|+++..-+.+|+++.|.|++|+|||||+..|++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5777877899999999999999999999999999876
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0002 Score=58.68 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+|+|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999987654
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=60.68 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 220 DVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 220 ~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
.+..+++.+|+|+.+.+...+|+..|. |.+.+.+..++. ...|..+ ....||+||+|.
T Consensus 127 ~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~-~Q~~~ee----k~~~AD~VIdN~ 184 (210)
T 4i1u_A 127 NWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIA-RQATREA----RLAAADDVIVND 184 (210)
T ss_dssp HHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHH-HSCCHHH----HHHTCSEEEECS
T ss_pred CccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHH-HcCChHH----HHHhCCEEEECC
Confidence 356678889999999999998988775 777776666554 3445433 357899999876
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=59.66 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+|-+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998865
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=59.03 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=25.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999988764
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=6.9e-05 Score=62.79 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=9.4e-05 Score=61.13 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=25.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.+|+|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344577999999999999999999998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=59.14 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=59.52 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|++||||||+.+.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999765
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00019 Score=71.30 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.3
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++++.++..++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678999999999999999999999998765
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=58.33 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998765
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=59.56 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|+|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998765
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=65.97 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.3
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999888876654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=58.42 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3799999999999999999999886
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=57.83 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~G 129 (287)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00025 Score=66.76 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF 142 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~ 142 (287)
++.+++++|+|||||||++..|+..+. +..+ +.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEE
Confidence 589999999999999999999999998 6655 544
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=59.44 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.5
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+|.+|+|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998775
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=58.42 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0003 Score=62.55 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
....|.++.|+||+|||||||.+.|+..+
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999998765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00018 Score=58.88 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=57.84 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00037 Score=58.91 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998765
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|+||+|||||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999877653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00031 Score=62.62 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=27.9
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34567888999999999999999999999765
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=66.05 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+||+|||||++.|+|..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999999975
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00045 Score=57.46 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+-+|+|+|+.||||||+.+.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999988764
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00046 Score=56.42 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988664
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00043 Score=55.81 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
=++++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998765
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0004 Score=64.14 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-++|+|++|||||||++.|++.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 566789999999999999999998876
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00051 Score=57.06 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.5
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.+..+|+|+|+.||||||+.+.|+..+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999987653
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00047 Score=56.50 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00047 Score=57.88 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00035 Score=59.81 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.|+|+|++|+|||||++.|+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 4689999999999999999998654
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00042 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|+.||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0004 Score=56.79 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|+|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988765
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00044 Score=58.81 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.++.|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987654
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00057 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988664
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00045 Score=58.46 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998775
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00056 Score=57.47 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00065 Score=56.84 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...++||+|+.||||||+.+.|+..+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999988643
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00079 Score=58.14 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++-+++|+||.||||||+.+.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999987654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00042 Score=60.69 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.++|+|++|||||||++.|+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999999753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00077 Score=58.79 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+|.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998764
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0011 Score=56.71 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=27.0
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.+.+..++.|+||+||||+|..+.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4556788999999999999999999998765
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00048 Score=63.38 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.3
Q ss_pred CeE-EEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHI-VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 Gei-vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.. ++|+|++|||||||++.|+|...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 444 99999999999999999998654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00089 Score=54.68 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34479999999999999999998854
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00097 Score=56.68 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00026 Score=65.18 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=25.8
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+++..+++.+ .+..|+|+|||||||++..|.=
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 3455666666 4889999999999999999874
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0009 Score=59.18 Aligned_cols=55 Identities=22% Similarity=0.492 Sum_probs=37.9
Q ss_pred hccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 223 SMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 223 ~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
..++.+|+++.+.+.+.+|+..|. |.+.+.+...+... .+...++ ..||++|++.
T Consensus 198 ~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~vIdn~ 252 (281)
T 2f6r_A 198 SMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNVVLSTL 252 (281)
T ss_dssp GGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSEEEECS
T ss_pred HhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCEEEECC
Confidence 456778899999999998888764 55666555555543 4444443 3589999875
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00093 Score=56.44 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988764
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=60.08 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=26.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999999886
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=60.69 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
|..++|+|.+|+|||||++.|++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999984
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=55.37 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998876
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0014 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCe--EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~Ge--ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999987
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0012 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00085 Score=64.46 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.9
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+++++.++..+.|+|++||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3678888999999999999999999998875
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=60.26 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998765
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00033 Score=65.67 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=37.2
Q ss_pred CCCCceeccccceEEE----e-----cCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHH
Q 023106 190 PVEDDILVGLQHKVVI----V-----DGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I----~-----~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
+.+..||||||++++| . +|+++|||| .+++.|.++.. .++++||+....
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 4567799999999988 2 689999999 45566666543 357999997654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999988643
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=55.74 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=36.6
Q ss_pred CCeEEEEcChHHHHHHHHHHHhcCCC--cHHHHHHHHHhcCccchh-hhcccCCCCC-EEEeCC
Q 023106 226 DEKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSI 285 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rvigr~i~~G~--~~~~~~~~~~~~~~~~~~-~i~~~~~~ad-~ii~~~ 285 (287)
+.+|+++.+.+...+|++.+...+|. +.+.+...+...+.+... .+.+....+| ++|+++
T Consensus 137 ~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~ 200 (219)
T 2h92_A 137 DLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTT 200 (219)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECC
Confidence 44689999999998887754444553 444444545433323332 3445555576 999865
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00077 Score=57.67 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+..|+.+.|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 345799999999999999998876654
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=55.51 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=55.60 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999998765
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=55.40 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|.+|.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999886
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.002 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999876
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=59.97 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999886
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999774
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=56.70 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|.|.|+.||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999998886
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0015 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.001 Score=58.69 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999853
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0015 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999988753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00069 Score=56.62 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998876
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.002 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999873
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 368999999999999999998753
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.001 Score=59.72 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|.||+|+|||||++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999874
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=57.05 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++..+.|.||+|+|||||++.|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 466889999999999999999999765
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=56.28 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999886
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=52.00 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999998754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0025 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+.|+|||||++.|.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4569999999999999999998863
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0024 Score=51.33 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999998875
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998843
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0019 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0019 Score=55.38 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998874
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.42 E-value=2.4e-05 Score=72.06 Aligned_cols=66 Identities=14% Similarity=-0.036 Sum_probs=44.6
Q ss_pred CCCCC-ceeccccceEEE--------------ecCCEEeEec-----------chHHHHHhccCCeEEEEcChHHHHHHH
Q 023106 189 DPVED-DILVGLQHKVVI--------------VDGNYLFLDG-----------GVWKDVSSMFDEKWFIEVDLDTAMQRV 242 (287)
Q Consensus 189 ~~~~~-~LSgGekqRv~I--------------~~p~lLllDE-----------~~~~~l~~~~~~~i~vtHd~~~~~~rv 242 (287)
++.+. .||+|||||++| .+|++||||| .+++.+.++....|++||+ +....++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i 337 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALT 337 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEE
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEE
Confidence 55666 799999999988 3799999999 4566666654233577784 3311133
Q ss_pred H----HHHhcCCCcHHH
Q 023106 243 L----KRHISTGKPPDV 255 (287)
Q Consensus 243 i----gr~i~~G~~~~~ 255 (287)
+ |+++..|+++++
T Consensus 338 ~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 338 LRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEETTEEEECCCTTTS
T ss_pred EEEECCEEEecCCHHHH
Confidence 3 677777777654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.002 Score=52.31 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.++|+|+.|+|||||++.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3689999999999999999988654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0022 Score=54.20 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|+||+||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998765
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0013 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
..-.++|+|+.|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.001 Score=52.71 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999987643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0021 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.+-.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0013 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998875
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=54.70 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+|.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999886
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0014 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.|+|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998743
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=57.06 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0026 Score=54.46 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|.|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999886
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0013 Score=60.00 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
...-.++|+|+||+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0023 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0022 Score=55.97 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.1
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34566799999999999999999998875
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0021 Score=58.12 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0013 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=59.40 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+||+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999877664
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=60.00 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=24.8
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-..+.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 344567899999999999999999987543
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0025 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.|+|+|+.|+|||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998864
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0025 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998854
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0019 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0024 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
--+++|+|+.|+|||||++.|++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999988764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0016 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0027 Score=54.10 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999999987
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=51.98 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0029 Score=50.77 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
--.++|+|+.|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999865
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=57.61 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
--+|+|+|..|+|||||++.|.|.-
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999999853
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
--.++|+|+.|+|||||++.+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999998753
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=51.85 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0027 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.002 Score=58.01 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999999888764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.003 Score=56.94 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0029 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.002 Score=56.16 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.002 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0013 Score=57.00 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=26.9
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.+...+| +.|.||+|+|||||++.|+..+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 34444555566 67999999999999999999875
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=52.62 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.6
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++.|.-...-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 444444445568999999999999999999874
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=57.89 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 466899999999999999999987664
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.003 Score=52.02 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|.+|+|||||++.+.|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=57.10 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356788999999999999999999885
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0027 Score=52.01 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0021 Score=57.88 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=37.9
Q ss_pred CccEEEecCchhhhhhh--------hhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 74 EIPVVEARCMDEVYDAL--------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 74 ~~~~i~~~~l~~~y~~~--------~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+.+++....-+..+-.. -.....+++..+++ .|.-+.|+|++|+|||||+..|.+
T Consensus 104 ~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 104 ETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45677666544333111 11123567777777 788999999999999999999887
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0029 Score=60.06 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=30.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 44444 5677899999999999999999999988765
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=26.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+...-+++ .|..+.|+||+|+|||||...|+....
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 344433343 578899999999999999998876543
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0023 Score=55.35 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.|+|+|+.|+|||||++.|.|.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998753
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0031 Score=50.69 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 455678999999999999999998875
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=59.85 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=26.2
Q ss_pred cccCC--CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNV--KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~--GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.+.+ ..+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44443 36999999999999999999999886
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0034 Score=51.05 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
--.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998853
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0026 Score=57.16 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=30.6
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566666689999999999999999999988876543
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0037 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999999874
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0034 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=51.59 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999998865
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0039 Score=51.32 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998743
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0016 Score=56.70 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.+|+|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999999987763
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0035 Score=51.09 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCC
Confidence 34579999999999999999998743
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0032 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45579999999999999999998854
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.|+|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0036 Score=51.17 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0036 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
--.++|+|+.|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998753
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|++|+|||||++.+.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999887753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0046 Score=53.01 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
....-+.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445578999999999999999999765
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0031 Score=51.07 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999988643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0057 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999887
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0035 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0048 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999875
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0033 Score=51.69 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0019 Score=53.38 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|++|+|||||++.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999998764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0036 Score=58.92 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999875
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0048 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999988764
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0051 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=24.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999886
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0047 Score=51.03 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
..-.|+|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45579999999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0044 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 347899999999999999988774
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.003 Score=55.49 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|..|||||||++.|+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0029 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.|+|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 6999999999999999999986
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0044 Score=51.48 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0043 Score=56.83 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=25.8
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|.++.|.|++|+|||||+..++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 77999999999999999999988876654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0038 Score=52.04 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998853
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0048 Score=53.10 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
--.+||+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999988765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0036 Score=56.07 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999999888764
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0042 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
--.++|+|..|+|||||++.++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999887754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0029 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998754
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0041 Score=56.58 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=30.6
Q ss_pred ccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 97 l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455555788999999999999999999998887765
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0024 Score=56.00 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988653
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0061 Score=55.56 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=25.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.+.-+++|+|+.|+|||||+..|++.+.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999998874
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0028 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0047 Score=50.93 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998743
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0037 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0049 Score=52.29 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
=+++|+++.|.|++|+|||||+..++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 36799999999999999999986554
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0043 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.|+|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0017 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998863
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0031 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=9.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0047 Score=52.16 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0034 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
..-.|+|+|+.|+|||||++.+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0053 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0025 Score=51.94 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+.-.++|+|+.|+|||||++.+.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998765
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0065 Score=56.57 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++|+||+|||||||...|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998765
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0044 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999998763
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0056 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4557999999999999999988754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.006 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 36899999999999999998764
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0044 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0064 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0026 Score=60.03 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+.|.||+|+|||||++.|+..+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999999876
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0072 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLl-k~L~Gll 131 (287)
+|.++.|.||.|+||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 5544443
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0047 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999887744
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.005 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.++|+|..|+|||||++.|.|..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998853
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0065 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999988763
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0077 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999988764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0059 Score=51.51 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|.+|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998863
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0055 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998643
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0084 Score=53.12 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=24.2
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.....+.|.||+|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445677889999999999999999875
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0081 Score=50.25 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998874
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0056 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.007 Score=54.64 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998874
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0087 Score=49.03 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.-.++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998864
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0031 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=5.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988876
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0087 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.|.-+.|.|++|+|||||...|..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999887765
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0089 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999998875
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0094 Score=49.32 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0097 Score=55.19 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.7
Q ss_pred ccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 99 ~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.=+.+.+|+..+|+|++|+|||||+..|+....
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 3447889999999999999999999998888654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0091 Score=46.95 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-+.|.||+|+|||++++.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 445588999999999999999987654
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0088 Score=50.66 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=25.8
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++.-.+.|.||+|+||||++..|+..+.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366666799999999999999999998875
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0029 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|+.|+|||||++.|.+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999988753
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.011 Score=57.51 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|.+|.|+|.+||||||+.+.|+..+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999998875
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0083 Score=56.39 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.7
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3455555588999999999999999999988887664
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.011 Score=56.77 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.7
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999997
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.012 Score=57.80 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+|.|+|.+||||||+.+.|+..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999874
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0055 Score=57.81 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.|+|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999874
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.013 Score=52.72 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++.-+.|.||.|+|||||++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678899999999999999999977
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 45689999999999999999998854
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0085 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 556799999999999999998743
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.012 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44577999999999999999999875
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.016 Score=55.56 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+|+|+|++|+|||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999997765
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0086 Score=60.37 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.9
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..|+.+.|+||+||||||++.++++...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998876654
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.016 Score=50.33 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
....-+.|.||+|+|||||++.|+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4556788999999999999999998764
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=53.46 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.-+.|.||+|+||||+.+.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345688999999999999999998775
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.014 Score=52.81 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999886
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.011 Score=53.34 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-+.+|.++.|.||+|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5678888999999999999999998764
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.015 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 355899999999999999999998774
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+-.++|+|+.|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998775
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.014 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|+|.|+.||||||+.+.|+..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998775
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.018 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+|.++|.+||||||+.+.|+..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988775
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.021 Score=48.90 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.-++.++|..|+|||||+..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998765
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0096 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHH-HHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAE-VVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~-L~Gll~ 132 (287)
-.++|+|+.|+|||||++. +.|...
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4689999999999999998 666543
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=55.31 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..|-.++|+|+.|+|||||++.|+|...
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 3567799999999999999999999743
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.018 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+|.++|.+||||||+.+.|+..+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998765
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.018 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.-+.|.||.|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999988653
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.018 Score=52.41 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
....-+.|.||+|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456788999999999999999998764
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.018 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+|=|+-||||||.++.|...+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577889999999999999999886
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.0047 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 446899999999999999888753
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.85 E-value=0.02 Score=51.26 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 445688999999999999999998765
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.024 Score=53.20 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998876
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.016 Score=53.31 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=24.9
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-+++|.++.|.|++|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 36799999999999999999997776554
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.011 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|.+++|||||++.|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999998754
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0041 Score=55.70 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+..|.-+.|.||+|+|||||++.|+..+.
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 333466788999999999999999999775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 287 | ||||
| d1sq5a_ | 308 | c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi | 1e-20 | |
| d1uj2a_ | 213 | c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho | 3e-15 | |
| d1a7ja_ | 288 | c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph | 2e-14 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 4e-14 | |
| d1odfa_ | 286 | c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker' | 2e-07 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 8e-06 | |
| d1khta_ | 190 | c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco | 2e-05 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 2e-05 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 6e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 9e-05 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 1e-04 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 2e-04 | |
| d2vp4a1 | 197 | c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr | 3e-04 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 3e-04 | |
| d1rkba_ | 173 | c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien | 4e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 7e-04 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 0.001 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.002 | |
| d1m7ga_ | 208 | c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A | 0.002 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 0.003 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.004 |
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Score = 87.5 bits (216), Expect = 1e-20
Identities = 35/213 (16%), Positives = 78/213 (36%), Gaps = 38/213 (17%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQD----------PKEAHARRGAPW 158
I+ +AG GKST A + +++ + + D + ++G P
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPE 141
Query: 159 TFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217
+++ L+ + +L++ +V AP + H + D + D +Q ++I++G + G
Sbjct: 142 SYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMD 201
Query: 218 WKD------VSSMFDEKWFIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYND----- 264
+ VS D +++ D + R + G D + Y
Sbjct: 202 YPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEE 261
Query: 265 -------------RPNAEL-IMKSKKNADLVIK 283
N + I+ +++ A L++
Sbjct: 262 AIKTAMTLWKEINWLNLKQNILPTRERASLILT 294
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.8 bits (172), Expect = 3e-15
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 23/194 (11%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS------SFDSQ-----DPKEAHARRGA- 156
++G++G +GKS++ A++V+ + + S DS ++A A +G
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 63
Query: 157 ----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
P F+ L+L LK + +V P +D E+ + V VV+ +G F
Sbjct: 64 NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PADVVLFEGILAF 122
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIEYNDRPNAEL- 270
++V +F K F++ D DT + R + R IS G+ + + +P E
Sbjct: 123 YS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEF 178
Query: 271 IMKSKKNADLVIKS 284
+ +KK AD++I
Sbjct: 179 CLPTKKYADVIIPR 192
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 69.6 bits (170), Expect = 2e-14
Identities = 23/209 (11%), Positives = 60/209 (28%), Gaps = 31/209 (14%)
Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINK--------------IWPQKASSFDSQDPKEA 150
KH I+ + G GAG ST+ + + + + + A
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA 61
Query: 151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ------- 200
+ +++ L + G ++ H + + G
Sbjct: 62 GDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFD 121
Query: 201 --HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAK 257
++ +G + + +++ + D K + ++ + + R +T G +
Sbjct: 122 SDSHLLFYEGLHGAVVNS-EVNIAGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVT 180
Query: 258 WRIEYNDRPNAEL-IMKSKKNADLVIKSI 285
I I+ D+ + +
Sbjct: 181 DVIL-RRMHAYVHCIVPQFSQTDINFQRV 208
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 67.1 bits (162), Expect = 4e-14
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 25/210 (11%)
Query: 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
+ + D L + +L A + ++G+ G +GK+TLA ++ + + +
Sbjct: 3 LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57
Query: 143 DSQDPKEAHARR----------GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192
E R L + L+ + P +DH +
Sbjct: 58 MDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK 117
Query: 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKP 252
+ + ++I K+ FD +++ + R + +
Sbjct: 118 RTVYLSDSDMIMIEGVFLQ------RKEWRPFFDFVVYLDCPREIRFARENDQV---KQN 168
Query: 253 PDVAKWRIEYNDRPNAELIMKSKKNADLVI 282
R + K AD+V
Sbjct: 169 IQKFINRYW-KAEDYYLETEEPIKRADVVF 197
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 37/228 (16%), Positives = 67/228 (29%), Gaps = 34/228 (14%)
Query: 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
+D + L + + + + +GP G+GKS + ++ + + + + S
Sbjct: 4 VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSI 61
Query: 142 FDSQD-----PKEAHA-------------RRGAPWTFNPLLLLNCLKNLRNQGS------ 177
+ E RG P T + LL L + N
Sbjct: 62 GYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDT 121
Query: 178 ----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF----LDGGVWKDVSSMFDEKW 229
Y S G GD + L + I++G +L L G D+ +
Sbjct: 122 VVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 181
Query: 230 FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKN 277
++ + + S G Y R E + SK
Sbjct: 182 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVG 229
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 43.1 bits (100), Expect = 8e-06
Identities = 21/176 (11%), Positives = 48/176 (27%), Gaps = 27/176 (15%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLL 166
K + + GP G GKST + +++ + P + LL
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSA-----YIEGDIINHMVVGGYRPPWESDELLA 56
Query: 167 NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226
KN+ + ++ + + V + D
Sbjct: 57 LTWKNITDL---TVNFLLAQNDVVLDYIAFPDEAEA--------------LAQTVQAKVD 99
Query: 227 EKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 282
+ + L T + +L+R K + + +E + ++ +
Sbjct: 100 DVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESK-----GIDERYFY 150
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 21/144 (14%), Positives = 37/144 (25%), Gaps = 20/144 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNC 168
+V + G PG G +T + + + K + G+
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRK-----------EGVNYKMVSFGSVMFEVAKEEN-- 49
Query: 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-------YLFLDGGVWKDV 221
L + R+Q P + I + V VD + W
Sbjct: 50 LVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLN 109
Query: 222 SSMFDEKWFIEVDLDTAMQRVLKR 245
D +E D + R +
Sbjct: 110 ELNPDLIIVVETTGDEILMRRMSD 133
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
+ + +VE+R + AL+ +LL A+ +G+ G PGAGKST +
Sbjct: 24 QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79
Query: 133 KIWPQKASSFDSQDPKEAHARRGAPWT 159
+ + A T
Sbjct: 80 REGLKVAVIAVDPSSPVTGGSILGDKT 106
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 41.8 bits (97), Expect = 6e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
R I + E+R + A + L+ A+ VG+ G PG GKST + +
Sbjct: 21 RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76
Query: 133 KIWPQKASS 141
+ A
Sbjct: 77 AAGHKVAVL 85
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.0 bits (92), Expect = 9e-05
Identities = 19/179 (10%), Positives = 42/179 (23%), Gaps = 26/179 (14%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW---PQKASSFDSQDPKEAHARRGAPWTFNPL 163
++ L G AGKS + + + + W + ++ +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 164 LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223
+ + L + + + DD+ +G D V
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERW--RSFVGDLDVLWV--- 117
Query: 224 MFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 282
+ D A R R + +A + D+ +
Sbjct: 118 ------GVRCDGAVAEGRETAR---GDRVAGMAAKQAYVVHEG---------VEYDVEV 158
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 1e-04
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 22/162 (13%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLN 167
HI L G G+GKS +A+EV +++ + D P+ + + N
Sbjct: 7 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD----GDFLHPRRNIEKMASGEPLNDDDRKP 62
Query: 168 CLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227
L+ L + + +KV ++ + L +
Sbjct: 63 WLQALN------------------DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLS 104
Query: 228 KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE 269
+++ D D R+ R K + + E
Sbjct: 105 FIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADE 146
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 38.5 bits (88), Expect = 2e-04
Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 14/139 (10%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLL 166
K I+ G PG+GKST A E + + + + ++
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 167 NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226
+ D G + D L + +
Sbjct: 62 GMQFDTAKS---ILYGGDSVKGVIISDTNLNPERRLAWE-----------TFAKEYGWKV 107
Query: 227 EKWFIEVDLDTAMQRVLKR 245
E +V ++R KR
Sbjct: 108 EHKVFDVPWTELVKRNSKR 126
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 15/146 (10%), Positives = 38/146 (26%), Gaps = 9/146 (6%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKASSFDSQDPKEAHARRGAPWTFNPL 163
V + G G+GK+T + N +K + + + E + W
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQ 70
Query: 164 LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG----NYLFLDGGVWK 219
+ + V + ++ + +
Sbjct: 71 SYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEE 130
Query: 220 DVSSMFDEKWFIEVDLDTAMQRVLKR 245
+ D ++ + A +R+ +R
Sbjct: 131 SIHVQADLIIYLRTSPEVAYERIRQR 156
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 15/182 (8%), Positives = 37/182 (20%), Gaps = 11/182 (6%)
Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLL 165
K + + G +GKS L ++ N + ++
Sbjct: 7 AKTVA-ILGGESSGKSVLVNKLAAVFNTTS----AWEYGREFVFEKLGGDEQAMQYSDYP 61
Query: 166 LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225
L + R S D F
Sbjct: 62 QMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDS------MIKEYPF 115
Query: 226 DEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285
D ++ + + + + + + + ++S D +
Sbjct: 116 DVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVK 175
Query: 286 DI 287
+
Sbjct: 176 AV 177
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 22/176 (12%), Positives = 46/176 (26%), Gaps = 34/176 (19%)
Query: 112 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKN 171
L G PG GK+TL E+ + + + ++
Sbjct: 9 LTGTPGVGKTTLGKELASKSG---------LKYINVGDLAREEQLYDGYD---------- 49
Query: 172 LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 231
+ +++D +V + G + G + + +
Sbjct: 50 ------------EEYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWF-HIVFVL 96
Query: 232 EVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287
D + +R+ R + K D + E E K+ + S
Sbjct: 97 RTDTNVLYERLETRGYNEKKLTD--NIQCEIFQVLYEEATASYKEEIVHQLPSNKP 150
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.2 bits (85), Expect = 7e-04
Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 24/180 (13%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNC 168
I+ L+G PG+GKST+A + D + + G + P
Sbjct: 6 ILLLSGHPGSGKSTIAEALANLPGVPK-----VHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
Query: 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228
++ V G ++ + + +
Sbjct: 61 RMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHY---------------- 104
Query: 229 WFIEVDLDTAMQRVLKR---HISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285
+ A++R L R +S + ++ S K+ D ++S
Sbjct: 105 IVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSA 164
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.001
Identities = 21/178 (11%), Positives = 51/178 (28%), Gaps = 16/178 (8%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNC 168
V L G GAGK+T++ + + + D F+P
Sbjct: 21 TVWLTGLSGAGKTTVSMALEEYLVCHGIP----CYTLDGDNIRQGLNKNLGFSPEDREEN 76
Query: 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228
++ + ++A + + + + + + F + V +
Sbjct: 77 VRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR- 135
Query: 229 WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK-SKKNADLVIKSI 285
+ L + G+ EY EL++K + + ++ +
Sbjct: 136 ----------DVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQV 183
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.001
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
++ A G GK+TL +++ +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCA 28
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 36.5 bits (83), Expect = 0.002
Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 12/179 (6%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--DSQDPKEAHARRGA-PWTFNPLLLL 166
+ + G PG GK+TL V++I + ++A F + E R G T +
Sbjct: 3 IIITGEPGVGKTTL----VKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58
Query: 167 NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226
K ++ V + + + + IL + + +D ++ S
Sbjct: 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118
Query: 227 EKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285
++ D + V I DV E P A LI + +N D++++ I
Sbjct: 119 RDLVRQIMHDPNVNVVATIPI-----RDVHPLVKEIRRLPGAVLIELTPENRDVILEDI 172
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 36.3 bits (83), Expect = 0.002
Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 19/187 (10%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLN 167
+ L G +GKSTLA E+ ++ + A D + R G N L +
Sbjct: 25 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-----IRFG----LNKDLGFS 75
Query: 168 CLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227
N + + + ++ L ++ F E
Sbjct: 76 EADRNENIRRIAEVAKLFADSN-SIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVE 134
Query: 228 KWFIEVDLDTAMQRVLKRH---ISTGKPPDVAKWRIEYNDRPNAELIMKS-----KKNAD 279
+++V ++ A QR K G + Y N E+ +K+ +
Sbjct: 135 V-YVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVK 193
Query: 280 LVIKSID 286
+I +D
Sbjct: 194 QIIDYLD 200
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.7 bits (81), Expect = 0.003
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
++ + G P GK+ ++ ++ R +N I
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFI 29
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 35.1 bits (79), Expect = 0.004
Identities = 22/178 (12%), Positives = 44/178 (24%), Gaps = 16/178 (8%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNC 168
+ L G +GK +A + +N+ S R + +
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQQG------GRSVSLLLGDTVRHELSSELGFTREDR 61
Query: 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228
N++ V G K + V E+
Sbjct: 62 HTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQ 121
Query: 229 WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK-SKKNADLVIKSI 285
+R + G+ Y A+L++ SK++ ++ I
Sbjct: 122 S---------DKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEI 170
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.98 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.98 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.97 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.97 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.97 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.95 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.95 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.94 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 99.58 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 99.45 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 99.29 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.23 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.17 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 98.72 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 98.4 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.95 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.91 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.85 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.81 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.77 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.76 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.76 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.72 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.67 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.63 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.62 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.61 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.58 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.54 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.54 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.53 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.49 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.49 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.45 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.44 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.37 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.36 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.34 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.27 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.26 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.23 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.22 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.22 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.21 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.19 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.18 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.18 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.16 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.14 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.12 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.11 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.11 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.11 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.1 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.1 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.09 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.09 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.09 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.08 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.07 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.07 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.03 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.01 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.0 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.0 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.99 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.95 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.94 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.93 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.93 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.93 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.92 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.91 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.9 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.9 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.9 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.88 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.88 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.83 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.83 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.82 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.76 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.75 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.75 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.7 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.69 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.69 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.67 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.65 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.61 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.58 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.57 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.55 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.54 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.51 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.51 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.5 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.48 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.45 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.44 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.43 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.41 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.4 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.38 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.34 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.33 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.31 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.29 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.28 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.24 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.23 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.22 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.22 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.21 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.21 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.2 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.19 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 96.19 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.15 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.14 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.03 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.03 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.02 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.02 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 96.01 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.01 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.01 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.98 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.98 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.97 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.96 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.91 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.91 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.88 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.88 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.86 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.86 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.84 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.79 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.77 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.76 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.73 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.72 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.7 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.68 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.68 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.62 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.62 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.62 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.61 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.6 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.53 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.5 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.49 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.46 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.42 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.42 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.42 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.41 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.4 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.38 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.32 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.31 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.24 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.21 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.2 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.2 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 95.16 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 95.16 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.15 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.09 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.09 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.05 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.01 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.96 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 94.9 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.81 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.8 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.7 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.7 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.69 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.65 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.5 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.46 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.45 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.32 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.26 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.16 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 94.16 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.09 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.06 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.9 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.88 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.79 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.75 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.72 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 93.66 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.42 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.21 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.17 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 92.78 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.74 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 92.62 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.56 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 92.38 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.35 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.72 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.71 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 91.67 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 91.5 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 91.37 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.25 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 90.69 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.67 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 90.62 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 90.1 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.44 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.11 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 88.95 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 88.88 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.82 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.8 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 88.37 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 88.29 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 88.29 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 87.94 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 87.77 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.69 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 87.62 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.08 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.89 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.73 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 86.69 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.07 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.99 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 84.23 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 83.59 | |
| d1gg4a4 | 214 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 83.55 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 82.34 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 82.3 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.77 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.6e-40 Score=286.63 Aligned_cols=175 Identities=15% Similarity=0.269 Sum_probs=140.7
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hh
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HA 152 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~ 152 (287)
|..|+++||+|+||+.. +|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|+++... ..
T Consensus 4 M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 4 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred cCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence 55699999999999876 9999999999999999999999999999999999999 9999 99999876432 22
Q ss_pred hCCCCCCCChhHH---HHHHHHHhcCCceeeccC--------------C-ccCCCCCCCceeccccceEEE-----ecCC
Q 023106 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSF--------------D-HGVGDPVEDDILVGLQHKVVI-----VDGN 209 (287)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~--------------~-~~~~~~~~~~LSgGekqRv~I-----~~p~ 209 (287)
++.++++||.+.+ +|+.+|+.++........ . ....++++.+|||||||||+| .+|+
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred cceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCC
Confidence 3457777777654 799999998765532110 0 124578999999999999999 9999
Q ss_pred EEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 210 YLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 210 lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+||||| .+++.+.++.+ .+++||||++++.+ |++ |++++.|+++++.
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999 56666666533 24799999999987 555 8999999999984
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-40 Score=283.59 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=113.5
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARRG 155 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~~ 155 (287)
|+++||+|+|++.. +|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|+++... ..+++
T Consensus 1 Iev~nv~k~yg~~~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~ 73 (232)
T d2awna2 1 VQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG 73 (232)
T ss_dssp EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence 68999999999876 9999999999999999999999999999999999999 9999 99999987543 22345
Q ss_pred CCCCCChhH---HHHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----ecCCEEe
Q 023106 156 APWTFNPLL---LLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----VDGNYLF 212 (287)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~~p~lLl 212 (287)
++++||.+. .+|++||+.++......... ....++++.+|||||||||+| .+|++||
T Consensus 74 ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill 153 (232)
T d2awna2 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 153 (232)
T ss_dssp EEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEE
T ss_pred eeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 666776654 38999999987654321111 124478999999999999999 9999999
Q ss_pred Eec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 213 LDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 213 lDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
||| ++++.|.++.+ . +|+||||++++.. |++ |++++.|+++++..
T Consensus 154 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 154 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999 45666666533 2 4799999999988 555 89999999999853
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.1e-40 Score=286.63 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=141.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--- 150 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--- 150 (287)
|+.|+++||+|.||+.. +|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|.++...
T Consensus 1 M~~i~v~nl~k~yg~~~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (240)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCcEEEEeEEEEECCEE----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence 66899999999999876 9999999999999999999999999999999999999 9999 99999875321
Q ss_pred ----hhhCCCCCCCChhHH---HHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE---
Q 023106 151 ----HARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI--- 205 (287)
Q Consensus 151 ----~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I--- 205 (287)
.+++.++++||.+.+ +|+.||+.++......... ....++++.+|||||||||+|
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAra 153 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 123456666666543 7999999886443211100 124578999999999999999
Q ss_pred --ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 206 --VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 206 --~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
.+|++||||| .+++.+.++.+ . +|+||||++++.. |++ |++++.|+++++.
T Consensus 154 L~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999 45666665533 2 5799999999987 555 8999999999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-39 Score=280.48 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=138.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
||+++||+|+|++ . +|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|+++... ..++
T Consensus 1 mi~v~nlsk~y~~-~----aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 1 MIEIESLSRKWKN-F----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp CEEEEEEEEECSS-C----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEeCC-E----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence 5899999999976 3 8999999999999999999999999999999999999 9999 99999876432 2234
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeecc-----------CC-ccCCCCCCCceeccccceEEE-----ecCCEEeEe
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAPS-----------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFLD 214 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~~-----------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLllD 214 (287)
+++++||.+.+ +|+.||+.++....... +. ....++++.+|||||||||+| .+|++||||
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllD 152 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeec
Confidence 56677776543 79999998865432111 00 124578999999999999999 999999999
Q ss_pred c-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 215 G-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 215 E-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
| ++++.+.++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 153 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9 45666666532 24699999999987 555 8999999999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2e-39 Score=282.25 Aligned_cols=178 Identities=20% Similarity=0.270 Sum_probs=141.1
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|..|+++||+|.|++. ...+|+||||+|++||++||+||||||||||+++|+|+++ |++| +.++|+++..
T Consensus 1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (242)
T ss_dssp CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence 5569999999999542 1338999999999999999999999999999999999999 9999 9999987532
Q ss_pred --HhhhCCCCCCCChhHH---HHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE----
Q 023106 150 --AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 150 --~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I---- 205 (287)
...++.++++||.+.+ +|++||+.++....... +. ....++++.+|||||||||+|
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL 155 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL 155 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred hcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHH
Confidence 1224457777776543 79999999875432110 00 124588999999999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC---C-eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~---~-~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
.+|++||||| .+++.+.++.+ . .|+||||++++.. |++ |++++.|+|+++..
T Consensus 156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999 45666655533 2 4799999999987 555 89999999999853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-39 Score=281.02 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=138.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||+|.|+.....+.||+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|+++.. .
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL 77 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence 58999999999875444458999999999999999999999999999999999999 9999 9999986521 1
Q ss_pred -hhhCCCCCCCChhH---HHHHHHHHhcCCceeeccCC---------------ccCCCCCCCceeccccceEEE-----e
Q 023106 151 -HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..++.++++||.+. .+|+++|+.++..+...... ....++++.+|||||||||+| .
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc
Confidence 12233555665543 37999999875433211100 124578999999999999999 9
Q ss_pred cCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH---HHH----HHHhcCCCcHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~ 256 (287)
+|++||||| .+++.|.++.++ +++||||++++.. |++ |++++.|+++++.
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999 556666665432 4799999999987 554 8999999999873
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.7e-38 Score=273.57 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=139.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHH----HHh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPK----EAH 151 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~----~~~ 151 (287)
+|+++||+|+||+.. +|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|+++. ...
T Consensus 6 ~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~ 78 (240)
T d1ji0a_ 6 VLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred EEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHHH
Confidence 799999999999876 9999999999999999999999999999999999999 9999 999998652 233
Q ss_pred hhCCCCCCCChh---HHHHHHHHHhcCCceeecc-------------CC--ccCCCCCCCceeccccceEEE-----ecC
Q 023106 152 ARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPS-------------FD--HGVGDPVEDDILVGLQHKVVI-----VDG 208 (287)
Q Consensus 152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~-------------~~--~~~~~~~~~~LSgGekqRv~I-----~~p 208 (287)
.+.++.+.+|.. ..+|+.+|+.++....... +. ....++++.+|||||||||+| .+|
T Consensus 79 ~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P 158 (240)
T d1ji0a_ 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred HHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 455655555543 3379999988754332111 10 124578899999999999998 999
Q ss_pred CEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 209 NYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 209 ~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
++||||| ++++.++++.+. ++++|||++++.+ |++ |++++.|+++++..
T Consensus 159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999 566666666443 4799999999987 554 89999999999854
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4e-38 Score=277.32 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=142.0
Q ss_pred ccEEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH----
Q 023106 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---- 149 (287)
Q Consensus 75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---- 149 (287)
|.+|+++||+|+|++.. +|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|+++..
T Consensus 2 M~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 2 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 74 (254)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred cceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence 78999999999999876 9999999999999999999999999999999999999 9999 9999986522
Q ss_pred HhhhCCCCCCCChhH---HHHHHHHHhcCCceee---------ccC------------------C-ccCCCCCCCceecc
Q 023106 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------PSF------------------D-HGVGDPVEDDILVG 198 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------~~~------------------~-~~~~~~~~~~LSgG 198 (287)
...+.++.+.||... .+++.||+.++..... ..+ . ....++++.+||||
T Consensus 75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 154 (254)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred HHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcH
Confidence 233456666666543 3799999987532110 000 0 11336789999999
Q ss_pred ccceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCc
Q 023106 199 LQHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 199 ekqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~ 252 (287)
|||||+| .+|++||||| ++++.|.++.+. ++++|||++++.. |++ |+++++|++
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecH
Confidence 9999998 9999999999 556666665443 4699999999987 665 899999999
Q ss_pred HHHHHHH
Q 023106 253 PDVAKWR 259 (287)
Q Consensus 253 ~~~~~~~ 259 (287)
+++....
T Consensus 235 ~e~~~~~ 241 (254)
T d1g6ha_ 235 EEEIKNV 241 (254)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 9976543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-38 Score=272.58 Aligned_cols=172 Identities=16% Similarity=0.245 Sum_probs=130.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH-----H
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE-----A 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~-----~ 150 (287)
||+++||+|.|+.....+.+|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|.++.. .
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence 58999999999765445568999999999999999999999999999999999999 9999 9999986421 1
Q ss_pred --hhhCCCCCCCChhH---HHHHHHHHhcCCceee-cc------------------CCccCCCCCCCceeccccceEEE-
Q 023106 151 --HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-PS------------------FDHGVGDPVEDDILVGLQHKVVI- 205 (287)
Q Consensus 151 --~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-~~------------------~~~~~~~~~~~~LSgGekqRv~I- 205 (287)
.++..++++||.+. .+|+.+|+.++..... .. ......+++|.+|||||||||+|
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIA 157 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (230)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHH
Confidence 12233566666543 3799999887533211 11 11123467899999999999999
Q ss_pred ----ecCCEEeEec-----------chHHHHHhccCC----eEEEEcChHHHHH--HHH----HHHhcCCC
Q 023106 206 ----VDGNYLFLDG-----------GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGK 251 (287)
Q Consensus 206 ----~~p~lLllDE-----------~~~~~l~~~~~~----~i~vtHd~~~~~~--rvi----gr~i~~G~ 251 (287)
.+|++||||| .+++.|.++.++ +|+||||++++.. |++ |+++++|.
T Consensus 158 raL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~ 228 (230)
T d1l2ta_ 158 RALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228 (230)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred hhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEecc
Confidence 9999999999 566777666432 4799999997632 443 66666554
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-37 Score=274.12 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=135.1
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH------
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE------ 149 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~------ 149 (287)
.|+++||+|+||+.. +|+||||+|++||++||+||||||||||+++|+|+++ |++| |.++|+++..
T Consensus 2 ~Lev~nl~k~yg~~~----al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~ 74 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 74 (258)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEEEEEEEECCEE----EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence 489999999999876 9999999999999999999999999999999999999 9999 9999986421
Q ss_pred ----------HhhhCCCCCCCChhH---HHHHHHHHhcCCcee--ec---------------cCCccCCCCCCCceeccc
Q 023106 150 ----------AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY--AP---------------SFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 150 ----------~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~--~~---------------~~~~~~~~~~~~~LSgGe 199 (287)
...++.++++||.+. .+++.+|+.++.... .+ .......++++.+|||||
T Consensus 75 ~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 154 (258)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred hcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHH
Confidence 122233455555433 378899987642110 00 011112367899999999
Q ss_pred cceEEE-----ecCCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcH
Q 023106 200 QHKVVI-----VDGNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 200 kqRv~I-----~~p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~ 253 (287)
+|||+| .+|++||||| ++++.|+++.+. +++||||++++.. |++ |++++.|+++
T Consensus 155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ 234 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999 9999999999 455666655433 5799999999987 555 9999999999
Q ss_pred HHHH
Q 023106 254 DVAK 257 (287)
Q Consensus 254 ~~~~ 257 (287)
++..
T Consensus 235 ev~~ 238 (258)
T d1b0ua_ 235 QVFG 238 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9853
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.4e-35 Score=259.10 Aligned_cols=176 Identities=21% Similarity=0.231 Sum_probs=135.9
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
||+++||+|+|++.. .+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... ..
T Consensus 1 mle~knvsf~Y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW 74 (242)
T ss_dssp CEEEEEEEECSSSSS---CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred CEEEEEEEEECCCCC---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence 589999999996532 28999999999999999999999999999999999999 9999 99999876442 22
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec--------------cCCcc-------CCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP--------------SFDHG-------VGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~--------------~~~~~-------~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|.+.+ .|+.+|+.++...... .+... .....+..|||||||||+|
T Consensus 75 r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal 154 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (242)
T ss_dssp TTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred HhheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 3446677776543 5888998765321100 00000 0123456799999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+++.|.++.+. +|+||||++.+.. |++ |++++.|+++++...
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 8999999999 567777776543 5799999998866 555 899999999998753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.98 E-value=2.3e-36 Score=263.38 Aligned_cols=175 Identities=18% Similarity=0.190 Sum_probs=135.6
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH--hhh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA--HAR 153 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~--~~~ 153 (287)
.|+++||+|+|+++. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++| +.++|+++... ..+
T Consensus 2 aI~v~nl~k~yg~~~----vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHH
T ss_pred CEEEEeEEEEECCEE----EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHH
Confidence 388999999999887 9999999999999999999999999999999999999 9999 99999865321 122
Q ss_pred CCCCCCCChh---HHHHHHHHHhcCCceeecc--------------CC-ccCCCCCCCceeccccceEEE-----ecCCE
Q 023106 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
..+++.+|.. ..+++.||+.+...++... +. ....++++..||||||||++| .+|++
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~i 154 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 154 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred hhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3344444432 3378888887643322110 00 123456899999999999998 99999
Q ss_pred EeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~~ 258 (287)
||||| .+++.+.++.+. ++++|||++++.. |++ |++++.|+++++...
T Consensus 155 llLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 155 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999 456666655433 4699999999987 655 899999999998643
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.5e-35 Score=257.86 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=135.5
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hh
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HA 152 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~ 152 (287)
.|+++||+++|++.. ...+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... ..
T Consensus 11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchhhhHHH
Confidence 499999999997643 3348999999999999999999999999999999999999 9999 99999876431 12
Q ss_pred hCCCCCCCChhHH--HHHHHHHhcCCceeec------------------cCC---ccCCCCCCCceeccccceEEE----
Q 023106 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAP------------------SFD---HGVGDPVEDDILVGLQHKVVI---- 205 (287)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~------------------~~~---~~~~~~~~~~LSgGekqRv~I---- 205 (287)
+..+.+++|.+.+ .|+.+|+.++...... ... .....+.+..|||||||||+|
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 2224444444332 5889999886331100 000 112245678899999999999
Q ss_pred -ecCCEEeEec-----------chHHHHHhccC----CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 -VDGNYLFLDG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 -~~p~lLllDE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|+++|||| .+++.|.++.+ .+|+||||++.+.. |++ |++++.|+++++...
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~ 241 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 241 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 8999999999 45666766543 25799999998755 655 899999999999754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=8.6e-35 Score=253.70 Aligned_cols=175 Identities=17% Similarity=0.259 Sum_probs=132.7
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~~ 153 (287)
|+++||+++|++.. ..+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... ..+
T Consensus 2 I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 2 ITFRNIRFRYKPDS--PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEESSTTS--CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred eEEEEEEEEeCCCC--cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchhhhh
Confidence 78999999995422 238999999999999999999999999999999999999 9999 99999875321 112
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee-----------------ccCCc---cCCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA-----------------PSFDH---GVGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~-----------------~~~~~---~~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+++|.+.+ .|+.+|+.++..... ..+.. ......+..|||||||||+| .
T Consensus 77 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp HHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred ceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhc
Confidence 224444444322 689999987643110 00001 12235678999999999999 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
+|++||||| .+++.|.++.+. +|+|||+++.+.. |++ |++++.|+++++..
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999 567777776554 5799999998755 555 89999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=2.3e-34 Score=249.58 Aligned_cols=170 Identities=17% Similarity=0.238 Sum_probs=133.3
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-hhhC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA-HARR 154 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~-~~~~ 154 (287)
.|++ ++.|+||+.. + ||||++. ++++||+||||||||||+++|+|+++ |++| |.++|.++... ..++
T Consensus 2 ~l~v-~~~k~~g~~~----~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r 70 (240)
T d2onka1 2 FLKV-RAEKRLGNFR----L--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEE-EEEEEETTEE----E--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred EEEE-EEEEEECCEE----E--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHc
Confidence 3677 5789998854 3 7999996 68999999999999999999999999 9999 99999876432 2345
Q ss_pred CCCCCCChhHH---HHHHHHHhcCCceeec------------cCC-ccCCCCCCCceeccccceEEE-----ecCCEEeE
Q 023106 155 GAPWTFNPLLL---LNCLKNLRNQGSVYAP------------SFD-HGVGDPVEDDILVGLQHKVVI-----VDGNYLFL 213 (287)
Q Consensus 155 ~~~~~~~~~~~---~tv~e~l~~~~~~~~~------------~~~-~~~~~~~~~~LSgGekqRv~I-----~~p~lLll 213 (287)
+++++||.+.+ +|+.||+.++...... .+. ....++++.+|||||||||+| .+|++|||
T Consensus 71 ~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illl 150 (240)
T d2onka1 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred CceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEe
Confidence 67777876543 7999999987532110 011 124578999999999999999 89999999
Q ss_pred ec-----------chHHHHHhccC----CeEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 214 DG-----------GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 214 DE-----------~~~~~l~~~~~----~~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|| .+++.++++.. .+|+||||++++.. |++ |++++.|+++++..
T Consensus 151 DEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 99 45666655533 35799999999987 555 89999999999863
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.3e-33 Score=248.01 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=131.6
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHH---Hhhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKE---AHAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~---~~~~ 153 (287)
|+++||+++|++.. ..+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++.. ...+
T Consensus 14 I~~~nvsf~Y~~~~--~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 14 LEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp EEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC--CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhhh
Confidence 99999999997542 238999999999999999999999999999999999999 9999 9999986532 1122
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceee------------------ccCCc---cCCCCCCCceeccccceEEE-----
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYA------------------PSFDH---GVGDPVEDDILVGLQHKVVI----- 205 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~------------------~~~~~---~~~~~~~~~LSgGekqRv~I----- 205 (287)
..+.+++|.+.+ .++.+|+.++..... ..+.. ......+..|||||||||+|
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 224444444332 466777766531100 00110 11234678899999999999
Q ss_pred ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 206 VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
.+|++||||| .+++.|.++... +|+||||++.+.. |++ |++++.|+++++...
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 8999999999 456666666543 4799999998755 555 899999999998753
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.6e-33 Score=247.39 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=133.2
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH---hhh
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA---HAR 153 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~---~~~ 153 (287)
|+++||+++|++.. ..+|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|.++... ..+
T Consensus 17 I~~~nvsf~Y~~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 17 IDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp EEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHhh
Confidence 99999999997632 238999999999999999999999999999999999999 9999 99999876432 222
Q ss_pred CCCCCCCChhHH--HHHHHHHhcCCceeec-----------------cCCcc---CCCCCCCceeccccceEEE-----e
Q 023106 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAP-----------------SFDHG---VGDPVEDDILVGLQHKVVI-----V 206 (287)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~-----------------~~~~~---~~~~~~~~LSgGekqRv~I-----~ 206 (287)
..+.+++|...+ .|+.+||.++...... .+..+ .....+..|||||||||+| .
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 334445554332 6899999876431100 00001 1123456799999999999 8
Q ss_pred cCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHHH--HHH----HHHhcCCCcHHHHHH
Q 023106 207 DGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 207 ~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~~ 258 (287)
+|++||||| .+++.|.++... +|+|||+++.+.. |++ |++++.|+++++...
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~ 242 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999 456666665543 5799999998865 555 899999999998653
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=8.7e-31 Score=227.17 Aligned_cols=169 Identities=21% Similarity=0.253 Sum_probs=118.0
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHH-----
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEA----- 150 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~----- 150 (287)
+|+++||+++| +|++|||+|++||++||+||||||||||+++|+|+ . |++| +.++|+++...
T Consensus 3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~---~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T---SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C---CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-C---CCceEEEECCEECCcCCHHHH
Confidence 69999998775 78999999999999999999999999999999996 4 6778 99999875321
Q ss_pred hhhCC-CCCCCChhHHHHHHHHHhcCCceee---------ccCC-ccCCCCCCCceeccccceEEE-----e-------c
Q 023106 151 HARRG-APWTFNPLLLLNCLKNLRNQGSVYA---------PSFD-HGVGDPVEDDILVGLQHKVVI-----V-------D 207 (287)
Q Consensus 151 ~~~~~-~~~~~~~~~~~tv~e~l~~~~~~~~---------~~~~-~~~~~~~~~~LSgGekqRv~I-----~-------~ 207 (287)
....+ +.+........++.+++.++..-.. ..+. ....++.+.+|||||||||+| + +
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~ 150 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 150 (231)
T ss_dssp HHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred HhhceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCC
Confidence 11111 1111111111234444443221100 0000 123457889999999999988 2 6
Q ss_pred CCEEeEec-----------chHHHHHhccCC---eEEEEcChHHHHH---HHH----HHHhcCCCcHHHHH
Q 023106 208 GNYLFLDG-----------GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 p~lLllDE-----------~~~~~l~~~~~~---~i~vtHd~~~~~~---rvi----gr~i~~G~~~~~~~ 257 (287)
|++||||| .+++.++++.+. ++++|||++++.. |++ |++++.|+++++..
T Consensus 151 p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 151 GQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp CCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence 79999999 445555554333 4699999999988 555 89999999999853
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.95 E-value=3.9e-31 Score=224.61 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=101.2
Q ss_pred EEEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC
Q 023106 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~ 155 (287)
.|+++||++.|+. . +|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|+++.......+
T Consensus 2 ~lev~~ls~~y~~-~----vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred eEEEEEEEEEeCC-e----EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence 4899999999953 4 8999999999999999999999999999999999999 9999 9999988754332211
Q ss_pred -CCCCCChhHHHHHHHHHhcCCceeec------------cCCccCCCCCCCceeccccceEEE-----ecCCEEeEec--
Q 023106 156 -APWTFNPLLLLNCLKNLRNQGSVYAP------------SFDHGVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG-- 215 (287)
Q Consensus 156 -~~~~~~~~~~~tv~e~l~~~~~~~~~------------~~~~~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE-- 215 (287)
+++....+..+++.+++.+...++.. .+.....++.+.+|||||||||.| .+|+++||||
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt 153 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 153 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 11111111113444544432111110 111112345788999999999988 9999999999
Q ss_pred ---------chHHHHHhccC
Q 023106 216 ---------GVWKDVSSMFD 226 (287)
Q Consensus 216 ---------~~~~~l~~~~~ 226 (287)
.+++.+.++.+
T Consensus 154 ~gLD~~~~~~i~~~l~~~~~ 173 (200)
T d1sgwa_ 154 VAIDEDSKHKVLKSILEILK 173 (200)
T ss_dssp TTSCTTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHh
Confidence 35666666544
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=3e-30 Score=229.72 Aligned_cols=161 Identities=11% Similarity=0.153 Sum_probs=112.1
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCCC
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA 156 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~~ 156 (287)
|+++|+++ ++.+ +|+||||+|++|+++||+||||||||||+++|+|+++ |++| |.++|+-
T Consensus 39 i~~~~~~~--~g~p----vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~i---------- 99 (281)
T d1r0wa_ 39 VSFSHLCL--VGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSGRV---------- 99 (281)
T ss_dssp -CHHHHHH--TTCE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCSCE----------
T ss_pred EEEEEcCC--CCCe----EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECCEE----------
Confidence 55555543 3344 9999999999999999999999999999999999999 9999 8888841
Q ss_pred CCCCChhHH--HHHHHHHhcCCceeec----------------cCCc---cCCCCCCCceeccccceEEE-----ecCCE
Q 023106 157 PWTFNPLLL--LNCLKNLRNQGSVYAP----------------SFDH---GVGDPVEDDILVGLQHKVVI-----VDGNY 210 (287)
Q Consensus 157 ~~~~~~~~~--~tv~e~l~~~~~~~~~----------------~~~~---~~~~~~~~~LSgGekqRv~I-----~~p~l 210 (287)
.+.+|...+ .++.+|+.++...... .+.. ......+..|||||||||+| .+|++
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccc
Confidence 122222111 3677777665332110 0110 11134566799999999999 99999
Q ss_pred EeEec-----------chHHHHHhcc-C--CeEEEEcChHHHHH--HHH----HHHhcCCCcHHHHH
Q 023106 211 LFLDG-----------GVWKDVSSMF-D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 211 LllDE-----------~~~~~l~~~~-~--~~i~vtHd~~~~~~--rvi----gr~i~~G~~~~~~~ 257 (287)
||||| .+++.+.... . .+|+|||+++.+.. |++ |++++.|+++++..
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred hhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999 2222211211 1 24799999987754 655 89999999999864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=1.5e-15 Score=135.37 Aligned_cols=181 Identities=18% Similarity=0.210 Sum_probs=125.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccC--CCcc-eeeCCCCHH--H-----HhhhCCCCCCCChhHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKA-SSFDSQDPK--E-----AHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~--p~~G-i~~~g~~~~--~-----~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (287)
+..-+|||.|++|||||||.+.|..++.... +.-. +..||.-.. . ...+.|.|..++...+...+..+..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L~~lk~ 157 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHHhcCCccCCchHhhhHHHHHHHHHHHHc
Confidence 3467999999999999999999999985211 1111 445664211 1 1234567888888888888888887
Q ss_pred CC-ceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecch------HHHHHhccCCeEEEEcChHHHHHHHHHHHh
Q 023106 175 QG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV------WKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 175 ~~-~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~~------~~~l~~~~~~~i~vtHd~~~~~~rvigr~i 247 (287)
+. .+..|.|+....+..+...-.-.+..|.|.+|.++|.|+.. ...+.+++|..|||..|.+.+..|.+.|.+
T Consensus 158 g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvda~~~~~~~r~i~R~~ 237 (308)
T d1sq5a_ 158 GVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFL 237 (308)
T ss_dssp TCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeecCCHHHHHHHHHHHHH
Confidence 64 46788888766655443322223446777888777777532 233778899999999999999887775554
Q ss_pred c-CCC----------------cH---HHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 248 S-TGK----------------PP---DVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 248 ~-~G~----------------~~---~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
. .|. .+ +.+...|...+.|+++ ||+|++.+||+||++.
T Consensus 238 ~~r~~a~~d~~~~~~~y~~~~~~ea~~~a~~~w~~i~~~nl~~~I~Ptk~rADlIi~~~ 296 (308)
T d1sq5a_ 238 KFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp HHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred HHhcccccChHHHHHHHhccCHHHHHHHHHHHHHHcchhhHHHhCccchhcceEEEEcC
Confidence 3 221 12 2345567888899987 9999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.4e-13 Score=114.09 Aligned_cols=171 Identities=25% Similarity=0.380 Sum_probs=108.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccC-CCcc-----eeeCCC----CHHHH-hhhCC-----CCCCCChhHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW-PQKA-----SSFDSQ----DPKEA-HARRG-----APWTFNPLLLLNCLK 170 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~~~~-p~~G-----i~~~g~----~~~~~-~~~~~-----~~~~~~~~~~~tv~e 170 (287)
.-+|||.|+.|||||||.+.|+..+.... +..+ +..|+. ..... ....+ .+..++...+...+.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLK 81 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccCCcHHHHHHHHHhhhh
Confidence 46899999999999999999988875211 1111 122331 11111 11111 233344444455556
Q ss_pred HHhcCCceeeccCCccCCCCCCCceeccccceEEEecCCEEeEecc---hHHHHHhccCCeEEEEcChHHHHHHHHHHHh
Q 023106 171 NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG---VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247 (287)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~LSgGekqRv~I~~p~lLllDE~---~~~~l~~~~~~~i~vtHd~~~~~~rvigr~i 247 (287)
.+..+.....+.++.....+.. ....+..++++++++. ....+.++++..|+|+.+.+....|++.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~iiveg~~~l~~~~l~~~~D~~i~v~~~~~~~~~R~~~Rd~ 153 (213)
T d1uj2a_ 82 EITEGKTVQIPVYDFVSHSRKE--------ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDI 153 (213)
T ss_dssp HHHTTCCEEEEEEETTTTEEEE--------EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHH
T ss_pred hhhcCCcccccccccccccccC--------ceEEecccceEEecchhhhccHHHHhhhheeeeecCCHHHHHHHHHHHHH
Confidence 6666655555555433222111 1122245566666661 1256788899999999999999998887765
Q ss_pred -cCCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEeCC
Q 023106 248 -STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 248 -~~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~~~ 285 (287)
.+|...+-+...|...+.|.++ ++.|++..||+||++.
T Consensus 154 ~~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~ 193 (213)
T d1uj2a_ 154 SERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRG 193 (213)
T ss_dssp HHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETG
T ss_pred HHcCCCHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCC
Confidence 4888777666677778888887 8999999999999864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.29 E-value=5.9e-13 Score=117.00 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=107.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eee--CCCC---H-------HHHhh--hCC----CCCCCChhHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSF--DSQD---P-------KEAHA--RRG----APWTFNPLLLLNC 168 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~--~g~~---~-------~~~~~--~~~----~~~~~~~~~~~tv 168 (287)
+|||.|++||||||+.+.|..++. ...- .++ |+.- . ..... +.. .+..++...+...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~---~~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~~~ 82 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR---REGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 82 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH---HHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh---hcCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHHHHH
Confidence 899999999999999999988886 2211 122 3321 1 01111 111 2445566666777
Q ss_pred HHHHhcCCceeeccCCccCCCCCCCceec---------cccceEEEecCCEEeEecchHHHHHhccCCeEEEEcChHHHH
Q 023106 169 LKNLRNQGSVYAPSFDHGVGDPVEDDILV---------GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 169 ~e~l~~~~~~~~~~~~~~~~~~~~~~LSg---------GekqRv~I~~p~lLllDE~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
+..+..+.....+.|++..........-- .+...|.|.+|-+.++..+ -..+++++|..|+|..|.++..
T Consensus 83 l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~-~~~ir~~~DlkIfVd~d~dlrl 161 (288)
T d1a7ja_ 83 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLKIGVVPVINLEW 161 (288)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCS-SCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccc-hhhhHhhcCeEEEEECCCCeEE
Confidence 88888888888888876544332221111 1233455555554443110 1236778888999999999999
Q ss_pred HHHHHHHhc-CCCcHHHHHHHHHhcCccchh-hhcccCCCCCEEEe
Q 023106 240 QRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 240 ~rvigr~i~-~G~~~~~~~~~~~~~~~~~~~-~i~~~~~~ad~ii~ 283 (287)
.|.+.|++. +|.+.+-+...+.. +.|.+. ||.|.+..||++|+
T Consensus 162 iRRI~RD~~eRG~s~E~V~~~i~r-rmpdy~~yI~Pq~~~aDI~~~ 206 (288)
T d1a7ja_ 162 IQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINFQ 206 (288)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHH-HHHHHHHHTGGGGGTCSEEEE
T ss_pred EeeehhhhhhcCCCHHHHHHHHHh-cchHHHHHHHHhhhceeEEEE
Confidence 988888875 89987777777775 688877 99999999999986
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.23 E-value=1.4e-13 Score=111.53 Aligned_cols=119 Identities=14% Similarity=0.044 Sum_probs=63.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eeeCCCCHHHHhhhCC--CCCCCChhHHHHHHHHHhcCCceeeccCCc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDH 185 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~~g~~~~~~~~~~~--~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 185 (287)
.++|+||||||||||+++|+|.++ ++.| +...+........+.+ +......... +..........+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI------FSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG---GGEEEEEEEEEC------CCEEEEEETTCCEEE------EEETTCCCSSEETT
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC---CCcceEEECCcchHHHHHhhhhhhhhhhHHHHH------Hhhhhhhhhhhhhh
Confidence 489999999999999999999999 8877 6666544322111110 0000000000 00000000000000
Q ss_pred cCCCCCCCceeccccceEEE-----ecCCEEeEec---------chHHHHHhccCC---e-EEEEcChH
Q 023106 186 GVGDPVEDDILVGLQHKVVI-----VDGNYLFLDG---------GVWKDVSSMFDE---K-WFIEVDLD 236 (287)
Q Consensus 186 ~~~~~~~~~LSgGekqRv~I-----~~p~lLllDE---------~~~~~l~~~~~~---~-i~vtHd~~ 236 (287)
...+.....+++|++++.++ .+|+++++|| ..+..+.+.... . ++++|+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD 141 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSC
T ss_pred hhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHH
Confidence 01122334568888888777 8999999999 234455554432 3 57778764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.72 E-value=1.5e-09 Score=88.22 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=28.8
Q ss_pred HHHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccch-hhhcccCCCCCEEEe
Q 023106 220 DVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNA-ELIMKSKKNADLVIK 283 (287)
Q Consensus 220 ~l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~-~~i~~~~~~ad~ii~ 283 (287)
.+...++..|+++-+.+....|.+.| .|...+....+|... .+.+ +++.| +..||+||+
T Consensus 139 ~~~~~~d~~i~l~~~~e~~~~R~~~r---~~~~~~~~~~~~~~~-~~~y~~~~~p-~~~ADiIid 198 (198)
T d1rz3a_ 139 EWRPFFDFVVYLDCPREIRFARENDQ---VKQNIQKFINRYWKA-EDYYLETEEP-IKRADVVFD 198 (198)
T ss_dssp TTGGGCSEEEEECCC-----------------CHHHHHHHHHHH-HHHHHHHHCH-HHHCSEEEC
T ss_pred cccccceeeeeccCcHHHHHHHHHHH---cCCCHHHHHHHHHHH-HHHHHHhcCh-HHhCCEEeC
Confidence 44556677889999999888777654 355555555555433 3333 36666 568999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=5e-07 Score=78.59 Aligned_cols=108 Identities=24% Similarity=0.376 Sum_probs=67.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccC---CCcc-eeeCCCC--HH------H------HhhhCCCCCCCChhHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW---PQKA-SSFDSQD--PK------E------AHARRGAPWTFNPLLLLN 167 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~~~~---p~~G-i~~~g~~--~~------~------~~~~~~~~~~~~~~~~~t 167 (287)
+.-+|||.|+.|||||||.+.|.-.+.... ..-. +.+|+.- .. . ....+|.|..++...+..
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~ll~~ 105 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQE 105 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHHHHH
Confidence 467999999999999999998876653110 1112 4566641 11 1 122367899999988888
Q ss_pred HHHHHhcCC------ceeeccCCccC----CCCCCCceeccccceEEEecCCEEeE
Q 023106 168 CLKNLRNQG------SVYAPSFDHGV----GDPVEDDILVGLQHKVVIVDGNYLFL 213 (287)
Q Consensus 168 v~e~l~~~~------~~~~~~~~~~~----~~~~~~~LSgGekqRv~I~~p~lLll 213 (287)
+++.+..+. .+..|.|++.. .++.+..-..-.+.+|.|.||.++.+
T Consensus 106 ~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~ 161 (286)
T d1odfa_ 106 VLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGF 161 (286)
T ss_dssp HHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTC
T ss_pred HHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcc
Confidence 888887653 36688888653 34444322222345677766554444
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=2.9e-06 Score=66.42 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998876
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.81 E-value=6.7e-06 Score=64.51 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|.|+|++||||||+.+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999998886
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.77 E-value=6.4e-06 Score=66.09 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.++.|+||+|||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=4.6e-07 Score=72.54 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=29.5
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++.++++.+| +..|+|+|||||||++.+|.-.+.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 345666777666 888999999999999999987765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=9.2e-06 Score=63.62 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=25.6
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999999875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.72 E-value=9.1e-06 Score=64.02 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|++|||||||+..|...+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 789999999999999998888876
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.70 E-value=8.9e-06 Score=63.84 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|.++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=1.1e-05 Score=63.33 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|.|+||+|+|||||++.++..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999987
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.63 E-value=1.3e-05 Score=62.96 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..|+|+||+|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998775
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.62 E-value=1.6e-05 Score=62.23 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|-.|.|.||+||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999998764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.61 E-value=1.6e-05 Score=62.07 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999999875
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=2.2e-05 Score=67.58 Aligned_cols=49 Identities=10% Similarity=-0.081 Sum_probs=35.0
Q ss_pred CCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccCC--eEEEEcChHHHH
Q 023106 191 VEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFDE--KWFIEVDLDTAM 239 (287)
Q Consensus 191 ~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~~--~i~vtHd~~~~~ 239 (287)
....+|.|+++...+ ..+.+++.|| .+.+.|.+..+. .|++||...++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~ 286 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME 286 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH
Confidence 456789999887644 6678999999 345555555443 579999987764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=2.2e-05 Score=60.29 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999998875
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=1.4e-05 Score=63.87 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|-+|.|+|++||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998876
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.53 E-value=2.4e-05 Score=60.81 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.|.||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999998764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.49 E-value=2.9e-05 Score=61.03 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=23.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|+|.|++||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999886
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.49 E-value=2.9e-05 Score=59.57 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=19.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~G 129 (287)
.+|.|.|++|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.45 E-value=3.4e-05 Score=60.10 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|+||+||||||+.+.|+..+.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 66999999999999999988764
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.44 E-value=4.3e-05 Score=61.42 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++.+|.|+||+||||||+.+.|+..+.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3567999999999999999999988764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.37 E-value=5.8e-05 Score=60.44 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++|-.+.|+||.||||||+.+.|+..+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677889999999999999999997654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=6.3e-05 Score=60.55 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+-.++.|+||.||||||+.+.|+..+.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556899999999999999999988764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=5.6e-05 Score=62.02 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|.++.|+||+|||||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999887765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=6.6e-05 Score=66.88 Aligned_cols=41 Identities=20% Similarity=0.441 Sum_probs=29.4
Q ss_pred EEecCchhhhhhhhhccccccccccccCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
|+++|. ++|.+.. .|+| ..+.+.+|+|||||||||++.+|.
T Consensus 6 l~l~NF-ks~~~~~-------~i~f--~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 6 LELSNF-KSYRGVT-------KVGF--GESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEESC-SSCCSEE-------EEEC--TTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCe-eeeCCCE-------EEeC--CCCCEEEEECCCCCCHHHHHHHHH
Confidence 677774 4554321 2333 445589999999999999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.26 E-value=7.6e-05 Score=61.51 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++|+|+.|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 789999999999999999987654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.23 E-value=8.4e-05 Score=58.57 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999986
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.22 E-value=8.8e-05 Score=58.09 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999999876
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.22 E-value=6.3e-05 Score=60.55 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=25.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.++.++.|+||+||||||+.+.|+..+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44678999999999999999999988654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.21 E-value=5.8e-05 Score=60.64 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.|+|+|+.|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00011 Score=58.86 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|.|+||.||||||..+.|+..+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=9.1e-05 Score=59.41 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.18 E-value=0.00011 Score=57.88 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.|.|+||+||||||+.+.|+..+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 477999999999999999988775
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00011 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
||+|.||+||||||+.+.|+.-+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999999875
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.16 E-value=7.2e-05 Score=62.29 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|...+++|++|+|||||++.|.+...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence 588999999999999999999987554
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.14 E-value=0.00012 Score=58.97 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|.|+||+|||||||++.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 56999999999999999988764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.12 E-value=0.00015 Score=60.61 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=25.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
....+..+.|.||+|||||||++.|++.+.
T Consensus 28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344556788999999999999999999875
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.11 E-value=0.00014 Score=59.32 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|+|.||+||||||+.+.|+..+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999886
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.11 E-value=0.00014 Score=57.78 Aligned_cols=27 Identities=37% Similarity=0.384 Sum_probs=22.9
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
+.-++..++.++|++||||||+++.++
T Consensus 9 ~~~~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 9 LLSPNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 344678899999999999999998764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.11 E-value=0.00014 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|+|++||||||+.+.|+..+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 55899999999999999998776
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.10 E-value=0.0001 Score=58.93 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-++.|+||.||||||+.+.|+..+.
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3578999999999999999988775
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.10 E-value=0.00011 Score=60.24 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=32.5
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc---eeeCCCCH
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA---SSFDSQDP 147 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G---i~~~g~~~ 147 (287)
+.-.+|.+|-|.|.+|||||||.+.|.-.+. ...| +.++|..+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~---~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRRVHAYRLDGDNI 64 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHCCCEEEECHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HhcCceEEEEcchHH
Confidence 3446899999999999999999999987664 2222 55676544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.09 E-value=0.00015 Score=57.49 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.|+||.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998775
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.09 E-value=0.00015 Score=58.36 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|.++|.+|||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998776
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00012 Score=56.65 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
|-.|+|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5679999999999999999999864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.00023 Score=58.63 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=26.5
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++.-.+..+++++||+|+||||.+--|+-.+.
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445566788999999999999999877776654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00016 Score=57.28 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+-.|||+|..|+|||||++.|+|.
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567999999999999999999874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=0.00015 Score=56.64 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|+|++||||||+.+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999998876
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00018 Score=57.44 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+.|+||+|+|||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999998887543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00027 Score=58.15 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=25.8
Q ss_pred ccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 101 sl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++-.+..+++++||+|+||||.+--|+-.+.
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445568999999999999999877777665
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=0.0002 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.00 E-value=0.00013 Score=58.44 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.++-+|+|-|+.||||||+++.|...+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999999987764
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.99 E-value=0.00018 Score=57.44 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=38.0
Q ss_pred HHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 221 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 221 l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
+...++.+|+|..+.+...+|++.| .|...+.+.... ....+.... +..||++|.|.
T Consensus 116 ~~~~~d~vI~v~a~~e~r~~Rl~~R---~~~~~~~~~~~~-~~q~~~~~~----~~~aD~vI~N~ 172 (191)
T d1uf9a_ 116 WEGRLHGTLLVAAPLEERVRRVMAR---SGLSREEVLARE-RAQMPEEEK----RKRATWVLENT 172 (191)
T ss_dssp CGGGSSEEEEECCCHHHHHHHHHTT---TCCTTHHHHHHH-TTSCCHHHH----HHHCSEEECCS
T ss_pred ccccceeEEEEecchhhHHHHHHhc---ccchHHHHHHHH-HhCCCHHHH----HHhCCEEEECC
Confidence 4455667889999999988887655 466666655433 344554432 46789999864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.00025 Score=56.11 Aligned_cols=24 Identities=46% Similarity=0.739 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|+||.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.00018 Score=56.40 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0002 Score=56.93 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=25.3
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-+.+|+++-|.||+|+|||||+..++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998887654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00023 Score=58.21 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|-+|+|-|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999886
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.93 E-value=0.00025 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|.|+|++|+|||||++.+.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.92 E-value=0.00029 Score=57.81 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+++++||+|+||||.+--|+-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999877877665
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00024 Score=57.67 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|.+|+|-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999876
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.91 E-value=0.00014 Score=57.32 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-|+|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999884
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00025 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|+||.||||||..+.|+..+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999987764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00021 Score=56.06 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.90 E-value=0.00036 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.++|+|.+|+|||||++.+.+-.
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999988753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.00026 Score=56.87 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|+|+|++|||||||++.|.+--
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00023 Score=62.45 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.8
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+.+.-.-.+.-+|||.||+|||||||+..|...+.
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3444433345688999999999999999999987765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.88 E-value=0.00023 Score=56.18 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999885
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.88 E-value=0.00032 Score=55.58 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.|+||.||||||+.+.|+..+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999998765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.88 E-value=9.9e-05 Score=58.62 Aligned_cols=22 Identities=50% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll 131 (287)
|||+|+.++|||||++.|+|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999987643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.83 E-value=0.00035 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.-.+.|+||.||||||+.+.|+..+.
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHC
Confidence 345788999999999999999998654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00033 Score=58.50 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=25.3
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+=+|++++- .+.++.|.|||.+||||+||.++-
T Consensus 31 VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 31 IANPLNLSP-QRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp CCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEECC-CceEEEEeccCchhhHHHHHHHHH
Confidence 445666553 346889999999999999999854
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.82 E-value=0.00017 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
+.-.++|+|++|||||||++.|.+-
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457889999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.76 E-value=0.00054 Score=56.09 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.++.++||+|+||||.+--|+-.+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999888887765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.75 E-value=0.00034 Score=56.82 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=36.0
Q ss_pred HHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCC
Q 023106 221 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 221 l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~ 285 (287)
+...++.+|+|..+.+....|+..|. |.+.+.+..... ..++..+. ...||+||+|.
T Consensus 120 ~~~~~d~ii~v~~~~~~r~~R~~~R~---~~s~e~~~~~~~-~Q~~~~~k----~~~aD~vI~N~ 176 (205)
T d1jjva_ 120 LTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMN-SQVSQQER----LKWADDVINND 176 (205)
T ss_dssp CGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHH-HSCCHHHH----HHHCSEEEECC
T ss_pred hhhhhhheeeecchHHHHHHHHHhcC---CchHHHHHHHHH-hCCCHHHH----HHhCCEEEECC
Confidence 34556778899999999888776553 666666665543 44444433 45789999874
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.75 E-value=7.8e-05 Score=62.27 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|....++|++|+|||||++.|.|-..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH
Confidence 578889999999999999999987654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.70 E-value=0.00017 Score=56.92 Aligned_cols=22 Identities=55% Similarity=0.761 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll 131 (287)
|||+|..++|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00045 Score=56.24 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHhccCCeEEEEcChHHHHHHHHHHHhcCCCcHHHHHHHHHhcCccchhhhcccCCCCCEEEeCCC
Q 023106 221 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286 (287)
Q Consensus 221 l~~~~~~~i~vtHd~~~~~~rvigr~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ii~~~~ 286 (287)
+...++.+|+|..+.+....|++.|. |.+.+.+..... ...+.... ...||+||+|..
T Consensus 121 ~~~~~~~iI~V~a~~e~r~~R~~~R~---~~~~~~~~~~~~-~Q~~~~~k----~~~aD~vI~N~~ 178 (208)
T d1vhta_ 121 LYKKANRVLVVDVSPETQLKRTMQRD---DVTREHVEQILA-AQATREAR----LAVADDVIDNNG 178 (208)
T ss_dssp GGGGCSEEEEEECCHHHHHHHHHHHH---TCCHHHHHHHHH-HSCCHHHH----HHHCSEEEECSS
T ss_pred ccccCCEEEEEeCCHHHHHHHHHHhh---hhhHHHHHHHHH-hCCCHHHH----HHhCCEEEECCC
Confidence 34456667899999998888887663 344444433332 33444333 577899998753
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.69 E-value=0.00044 Score=57.37 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=22.6
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+|++++ ++++.|.|||.+||||++|.++-
T Consensus 29 Ndi~~~---~~~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 29 NDLEMA---HELVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEEES---SCEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEeC---CcEEEEECCCccccchhhhhhHH
Confidence 445443 35889999999999999998754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.0005 Score=56.32 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.9
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+|.+|+|-|+-||||||+++.|+..+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3799999999999999999999998886
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00024 Score=58.44 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.+|+|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998775
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.61 E-value=0.00064 Score=55.79 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=20.0
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+...+++++||+|+||||.+--|+-.+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999877776665
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.58 E-value=0.00081 Score=52.63 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.5
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...++|.+++|.|+=|||||||.|.++.-+.
T Consensus 28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 3457899999999999999999999988775
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.57 E-value=0.00062 Score=59.50 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=27.0
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.+...-.+.-++||.|+.|||||||+..|...+.
T Consensus 42 ~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 42 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 33333345678999999999999999999887653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.55 E-value=0.00059 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.54 E-value=0.00055 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999998774
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.51 E-value=0.00075 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998885
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.51 E-value=0.00065 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
++.-.+.|+|.+|||||||++.|.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998875
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.50 E-value=0.00074 Score=55.31 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+-|.||+|+|||||+++|+..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999998765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.48 E-value=0.00036 Score=61.10 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=28.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc-eee
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF 142 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G-i~~ 142 (287)
+..+.-+.|.|+.|||||||++.|++.++ +..- +.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~---~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcc---cccceeec
Confidence 44556689999999999999999999887 6544 444
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.00092 Score=55.25 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+.|.||+|+||||++++|+..+.
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.44 E-value=0.00025 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.|+|+|..++|||||++.|.|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.43 E-value=0.0009 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|++|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988763
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.41 E-value=0.0009 Score=54.99 Aligned_cols=23 Identities=52% Similarity=0.814 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+-+.||+|+|||||+++|+..+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 66999999999999999999886
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.00036 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
..-.|+|+|..++|||||++.|.+.
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999774
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.38 E-value=0.00064 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-|||+|...||||||++.|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 3999999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.001 Score=54.71 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+-+.||+|+|||||++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.0011 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4789999999999999988763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.00069 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.7
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
+++|.++-|.||+|||||||+..++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 7799999999999999999987665
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0014 Score=53.70 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
=+++|.++.|.|++|||||||...++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999877653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.0011 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|.||+|+|||||+++|+..+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHc
Confidence 67999999999999999998763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.24 E-value=0.0013 Score=51.12 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4889999999999999988764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.23 E-value=0.0012 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.-+.++||+|+|||+|.|.|+..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 3456899999999999999999876
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0014 Score=51.33 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987663
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.22 E-value=0.0013 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|||+|...||||||++.|.+...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~ 30 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAV 30 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhcc
Confidence 599999999999999999988643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.21 E-value=0.00085 Score=56.48 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.-.|+|+|.+|+|||||++.|.|.-
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999999864
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.20 E-value=0.0022 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
...+.|.||.|+||||+++.|+..+.
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHh
Confidence 44788999999999999999999886
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0013 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|++|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0013 Score=56.45 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.2
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.=+.|.+|+..+|+|+.|+|||||+..|+....
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 446899999999999999999999999987654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0016 Score=50.34 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987765
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.14 E-value=0.0013 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.6
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+++|.++-|.||+|||||||+-.++-
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999999865543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.03 E-value=0.0015 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.++.|.||.|+|||||++.++..+.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 456899999999999999998876654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.03 E-value=0.0015 Score=53.58 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.3
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+++|.++.|.|++|||||||+..++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999987666554
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.02 E-value=0.0015 Score=54.77 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=28.0
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-|+++..=+.+|+++.|.|++|+|||||+..|+-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 34444445789999999999999999998877754
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.02 E-value=0.0015 Score=52.93 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=24.4
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+++|+++-|.|++|+|||||+.-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999987776543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.01 E-value=0.0029 Score=49.92 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
.+.|+|.+|+|||||++.+. ......|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence 57899999999999999984 3333457777
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0017 Score=50.13 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.++|.+|+|||||++.+.+-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.002 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|++|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.98 E-value=0.002 Score=53.88 Aligned_cols=26 Identities=42% Similarity=0.597 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..-+-|.||+|+|||+|++.|+..+.
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHhhccc
Confidence 34477999999999999999999876
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0022 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~G 129 (287)
-.+.|+|.+|+|||||++.+.+
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998765
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.97 E-value=0.0015 Score=52.70 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.0
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
+++|.++-|.|++|+|||||+.-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 6799999999999999999985443
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0025 Score=53.63 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.-+-|.||+|+|||+|++.|+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcC
Confidence 4467999999999999999999876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0019 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~G 129 (287)
-.|+|+|+.|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999998765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.91 E-value=0.0024 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998776
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0018 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999998865
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0024 Score=49.30 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.88 E-value=0.0012 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
+--.++|+|+.|+|||||++.+.+
T Consensus 15 ~~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999998865
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0023 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+-|.||+|+||||++++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56899999999999999998775
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0022 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.0026 Score=49.20 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998865
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0025 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|.+|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999888764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.86 E-value=0.0017 Score=53.86 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 566779999999999999998875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0021 Score=49.77 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999987765
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.84 E-value=0.0025 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+|||.|+-||||||+.++|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999998653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0024 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.|+|+|..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0029 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.79 E-value=0.0029 Score=48.59 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0031 Score=53.29 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=30.7
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~ 146 (287)
=++.|.++-|.||+|||||||+-.++.... ...+ ++++.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q---~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH---cCCCEEEEEcccc
Confidence 456899999999999999999876666554 2333 6677653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.003 Score=49.18 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.|+|++|+|||||++.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999987765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.76 E-value=0.0031 Score=53.19 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-+-|.||+|+|||+|++.|++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 344477999999999999999999876
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.003 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988763
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.73 E-value=0.0018 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.--|+|+|.+|+|||||++.|.|.
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999985
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0026 Score=49.33 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999887753
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.70 E-value=0.0041 Score=52.65 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=31.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQD 146 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~~ 146 (287)
-++.|.++-|.||+|+|||||+-.++.... ...| +++|.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q---~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh---cCCCEEEEEECCc
Confidence 578999999999999999999866665544 3445 5677654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.003 Score=52.74 Aligned_cols=23 Identities=48% Similarity=0.736 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+-+.||.|+|||+|++.|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 67999999999999999998765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0028 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 4889999999999999988753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0033 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+-|.||.|+||||++++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 56999999999999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0031 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|..|+|||||++.+.+-
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0036 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999977654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.61 E-value=0.0025 Score=49.92 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=22.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.-++--.+.|+|++|+|||||++.+.+-
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3445567899999999999999987543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.0028 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+-|.||+|+||||+++.++..+.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 66999999999999999998763
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0032 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999887654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0041 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0036 Score=48.74 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.|.|+|..|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999988765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.52 E-value=0.0022 Score=55.64 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+-|+||.|+|||||++.|+++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 477999999999999999999986
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0039 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~G 129 (287)
-.+.|+|..|+|||||++.+.+
T Consensus 6 iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999988765
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0043 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.|+|+.|+|||||++.+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0039 Score=50.94 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+|+|=|+-||||||+++.|...+.
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence 35899999999999999999998775
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.46 E-value=0.0055 Score=47.82 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
.+.|+|..|+|||||++.+..... |+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~---~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE---AGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS---CCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC---CCcc
Confidence 578999999999999998876555 7777
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.42 E-value=0.0058 Score=49.76 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
-.+.|+|.+|+|||||++.+..- +..|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~--~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRIL--HVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH--HCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CcCCCCC
Confidence 36789999999999999877432 1237777
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0035 Score=48.80 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 57899999999999999987653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0053 Score=51.37 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=25.4
Q ss_pred cccccccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 98 ~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+...+..++| +-|.||+|+|||+|++.++....
T Consensus 31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCCCCCce--eEEecCCCCCchHHHHHHHHHhC
Confidence 3333444455 67899999999999999999765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.41 E-value=0.0069 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.8
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.-++.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 4667899999999999999999988875
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0047 Score=47.74 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.38 E-value=0.0055 Score=54.09 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=28.0
Q ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 102 l~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.++++.++.+.||.|+|||||.+.|++.+.
T Consensus 149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred hCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567888999999999999999999999886
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.0054 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~G 129 (287)
-.+.|+|..|+|||||++.+.+
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3578999999999999998876
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.31 E-value=0.0047 Score=52.28 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=31.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCcc--eeeCCC
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQ 145 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G--i~~~g~ 145 (287)
=++.|.++-|.||+|||||||+..++.... ...| +++|.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq---k~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH---hCCCEEEEEECC
Confidence 356899999999999999999988877765 3445 567765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.24 E-value=0.0057 Score=47.31 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0059 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-.++|+|..|+|||||++.+.+-
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999977664
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.21 E-value=0.0038 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.-.+.|+|++|+|||||++.+.+
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.006 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.20 E-value=0.0032 Score=48.98 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=9.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.|.|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987665
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0032 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|+|+||-++||||||+.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999998653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=95.16 E-value=0.006 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+-.+||||.+-+|||||++.|++.-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 34569999999999999999999863
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.15 E-value=0.0054 Score=55.61 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=25.3
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI 134 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~~~ 134 (287)
++.+- =+-++||+|||||-|++.|++++..+
T Consensus 46 ei~ks-NILliGPTGvGKTlLAr~LAk~l~VP 76 (443)
T d1g41a_ 46 EVTPK-NILMIGPTGVGKTEIARRLAKLANAP 76 (443)
T ss_dssp TCCCC-CEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred ccccc-cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44444 46799999999999999999998743
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0059 Score=48.02 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.09 E-value=0.0072 Score=47.84 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=19.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.|.=+.|.|++|+|||||+-.+..
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 477789999999999999866543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.05 E-value=0.0085 Score=46.87 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=23.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (287)
.+.|+|..|+|||||++.+..-.....|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5789999999999999988655433345555
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.003 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.01 E-value=0.0054 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+||+|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999988643
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.96 E-value=0.0069 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
.|.-+.|.|++|+|||||.-.|.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 57789999999999999986653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.90 E-value=0.0063 Score=51.64 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.8
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
.=+.+.+|+.++|+|+.|+|||||+..|+-.
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 3468889999999999999999998777655
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.81 E-value=0.0077 Score=47.16 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.+.|+|..|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0077 Score=47.53 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
.++|+|..|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.0069 Score=50.34 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.+|.++.|.|+.|+|||||+-.|+-.+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 369999999999999999998777654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.70 E-value=0.0056 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-|||+|.+-+|||||++.|+|.-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 38999999999999999998864
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.69 E-value=0.0096 Score=47.97 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+||+|.-++|||||+..|.....
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~g 28 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVAA 28 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Confidence 489999999999999999976543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.012 Score=50.62 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+...+.++||+|+|||.|++.|+..+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 344678999999999999999999886
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.50 E-value=0.011 Score=46.46 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=19.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.|.-+.|.|++|+|||||+-.+..
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 477899999999999998855543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.46 E-value=0.01 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-.+||||-+-+|||||++.|++.-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.45 E-value=0.013 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gl 130 (287)
...+++|.|.-|.|||||++.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999988654
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.03 Score=41.26 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=31.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-cc--ee-eCCCCH
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KA--SS-FDSQDP 147 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~~~~p~-~G--i~-~~g~~~ 147 (287)
++|..+.+.|-+|||||||.+.|.-.+. .. .| +. ++|.++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~---q~~G~R~vtll~~~ni 47 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFL---QFGGGRYYKIFEHNNK 47 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT---TSCSCCCEEECCCTTC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHH---HhcCCcceEEecCCCH
Confidence 4799999999999999999999977765 43 44 44 566654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.0033 Score=55.32 Aligned_cols=51 Identities=8% Similarity=0.022 Sum_probs=35.9
Q ss_pred CCCCceeccccceEEE---------ecCCEEeEec-----------chHHHHHhccC---CeEEEEcChHHHHH
Q 023106 190 PVEDDILVGLQHKVVI---------VDGNYLFLDG-----------GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 190 ~~~~~LSgGekqRv~I---------~~p~lLllDE-----------~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.....|||||+.+++| .++++++||| .+.+.|.++.. +.|++||+...+..
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ 401 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 401 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh
Confidence 3456789999988655 5677999999 34444544432 36899999987654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.16 E-value=0.0093 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|.-.||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.01 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
++.|.|.=|||||||++-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999887653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.09 E-value=0.013 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-++|+|+.|+|||||+..|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 3799999999999999998544
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.06 E-value=0.016 Score=46.58 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+-+.||+|+||||+++.++..+.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 477899999999999999999875
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.018 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHH-HHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEV-VRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L-~Gll~ 132 (287)
-+.|+|++||||||+++.| ..++.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 4789999999999998644 44444
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.88 E-value=0.011 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
.++|+|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999953
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.79 E-value=0.024 Score=49.00 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=23.0
Q ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..+| ++.+.||+|+|||.|.+.|++.+.
T Consensus 121 ~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 121 YASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred cCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 3344 566689999999999999999875
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.021 Score=46.70 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+-|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 466889999999999999998876
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.72 E-value=0.015 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~G 129 (287)
-+||+|+.|||||||+..|+-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999988853
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=93.66 E-value=0.016 Score=49.05 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.2
Q ss_pred cccccccccCCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 96 ~l~~vsl~i~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+++ .=+.+.+|+.++|+|+.|+|||+|+..+.-..
T Consensus 57 ~ID-~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 57 AID-AMIPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TTT-TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred EEe-ccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence 453 44689999999999999999999998754433
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.42 E-value=0.024 Score=45.22 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.--+||+|.-.+|||||+..|+|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 344599999999999999999987543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.21 E-value=0.039 Score=47.79 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCcceee
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~~~~p~~Gi~~ 142 (287)
+|.|=|+=|+||||+++.|...+. ...++.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~---~~~~v~~ 38 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS---GGSPTLY 38 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG---CSSCEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhc---cCCCeEE
Confidence 688999999999999999999886 4444433
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.17 E-value=0.034 Score=44.34 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+||+|.-.+|||||++.|.+.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999988764
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.78 E-value=0.018 Score=48.92 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=25.6
Q ss_pred cccccCCCeEEEEECCCCCCHHHHHHHHHH
Q 023106 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 100 vsl~i~~GeivgIiGpNGsGKSTLlk~L~G 129 (287)
.=+.+.+|+.++|+|+.|+|||||+..++.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence 447899999999999999999999865543
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.74 E-value=0.04 Score=47.24 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.-.+.++||+|+|||.|.+.|+..+.
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHhc
Confidence 344677999999999999999999874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.039 Score=44.14 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
=+.|+|++|.|||+++.-|+..+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 467999999999999999988765
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.56 E-value=0.032 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|.||+|+|||-|++.++-...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 67999999999999999987764
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=92.38 E-value=0.048 Score=47.17 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-+|.|=|+=||||||+++.|...+.
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999998875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.041 Score=46.17 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
=+.||||+|+|||+++.-++..+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 466999999999999999988765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.72 E-value=0.05 Score=47.64 Aligned_cols=29 Identities=28% Similarity=0.682 Sum_probs=23.6
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+++++-++ ++||+|+|||-|.|.|+.++.
T Consensus 65 ~~p~~niL-fiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 65 ELSKSNIL-LIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp TCCCCCEE-EECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCccee-eeCCCCccHHHHHHHHHhhcc
Confidence 44556554 779999999999999999875
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.71 E-value=0.041 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gl 130 (287)
-+||+|.-++|||||+..|...
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~ 26 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMD 26 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 3899999999999999888653
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=91.67 E-value=0.048 Score=45.38 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHH-HHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTL-AAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTL-lk~L~Gll~ 132 (287)
+.|+|+.||||||. +..++.++.
T Consensus 17 ~lI~g~aGTGKTt~l~~rv~~ll~ 40 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKIAHLIR 40 (306)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHHHHHHH
Confidence 56899999999975 455555543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=91.50 E-value=0.04 Score=47.68 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
-.|.|-|+=||||||+++.|+..+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred eEEEEECCcCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=91.37 E-value=0.062 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll 131 (287)
++++|.-.+|||||+..|+...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 7999999999999999996654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.25 E-value=0.076 Score=44.39 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=26.4
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..++--++.|.||.++|||||+..|..++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456677999999999999999999999874
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=90.69 E-value=0.068 Score=38.65 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=17.9
Q ss_pred cCCCeEEEEECCCCCCHHHHH
Q 023106 104 VNVKHIVGLAGPPGAGKSTLA 124 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKSTLl 124 (287)
+++|+.+.|.+|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 457999999999999999554
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.67 E-value=0.067 Score=44.91 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHH-HHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLA-AEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLl-k~L~Gll~ 132 (287)
+.|.|+.||||||.+ ..++-++.
T Consensus 27 ~lV~g~aGSGKTt~l~~ri~~ll~ 50 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLTHRIAYLMA 50 (318)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHHHH
Confidence 668899999999754 44555543
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=90.62 E-value=0.078 Score=42.52 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.9
Q ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 103 ~i~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+++--++.|.||.++|||+|+..|+..+.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 457778999999999999999999999875
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.1 Score=45.52 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=18.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHH
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~ 128 (287)
+.++.|.||.|+||||++..+.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHHH
Confidence 5689999999999999875443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.44 E-value=0.098 Score=43.56 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
..+-.++|+|-+-+|||||++.|.|.-
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEEecCccchhhhhhhhhccc
Confidence 356679999999999999999999854
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.11 E-value=0.095 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll 131 (287)
-++|+|.-++|||||+..|+-..
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~~~ 30 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIYKC 30 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999998886543
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=88.95 E-value=0.14 Score=48.35 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=24.7
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.+.|.|.|.+|||||+-.|.|...+.
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988764
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.88 E-value=0.15 Score=48.53 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.+.|.|.|.+|||||+-.|.|+..+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999988774
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=88.82 E-value=0.1 Score=44.50 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.7
Q ss_pred CCCeEEEEECCCCCCHHHHH
Q 023106 105 NVKHIVGLAGPPGAGKSTLA 124 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLl 124 (287)
+.|++..+-|.+|+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 35889999999999999975
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.80 E-value=0.16 Score=40.30 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+--+.+.||+|+||||+.+.++..+.
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 466788999999999999999998775
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.091 Score=45.53 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q 023106 110 VGLAGPPGAGKSTLAAEVVR 129 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~G 129 (287)
|||+|.-|+|||||+..|.-
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~ 39 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQ 39 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 99999999999999998864
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=88.29 E-value=0.11 Score=42.99 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=21.4
Q ss_pred cCCCeEEEEECCCCCCHHH--HHHHHHHHh
Q 023106 104 VNVKHIVGLAGPPGAGKST--LAAEVVRRI 131 (287)
Q Consensus 104 i~~GeivgIiGpNGsGKST--Llk~L~Gll 131 (287)
+.+|+.+.|.+|.|||||+ |..++...+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~ 35 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999997 335554444
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=88.29 E-value=0.17 Score=48.07 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.+.|.|.|.+|||||+-.|.|...+.
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999988874
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.94 E-value=0.091 Score=43.22 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 023106 110 VGLAGPPGAGKSTLAAEVVRR 130 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gl 130 (287)
++|+|.-++|||||+..|...
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~~ 47 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILFL 47 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHHHH
Confidence 899999999999999988543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=87.77 E-value=0.21 Score=40.94 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
..-|.|.|+.|+||+++.+.|-..-.
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 44578999999999999999987654
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.69 E-value=0.12 Score=44.26 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=17.0
Q ss_pred CCeEEEEECCCCCCHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLA 124 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLl 124 (287)
.|++..+.|.+|+|||||.
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4889999999999999974
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=87.62 E-value=0.16 Score=37.09 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.1
Q ss_pred CCeEEEEECCCCCCHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAA 125 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk 125 (287)
.-+...|.+|.|||||+++-
T Consensus 7 ~~~~~ll~apTGsGKT~~~~ 26 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVP 26 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHH
T ss_pred CCCEEEEEeCCCCCHHHHHH
Confidence 34667789999999998763
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.08 E-value=0.15 Score=43.56 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=17.4
Q ss_pred CCeEEEEECCCCCCHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLA 124 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLl 124 (287)
.|++..+-|-||+|||||.
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788899999999999997
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.89 E-value=0.2 Score=48.12 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.+.|.|.|.+|||||+-.|.|...+.
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998875
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.73 E-value=0.15 Score=44.93 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023106 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 110 vgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+.|||++|.|||+++.-|+..+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999987776553
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=86.69 E-value=0.22 Score=47.87 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.+.|.|.|.+|||||.-.|.|...+.
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3679999999999999999999988875
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=86.07 E-value=0.27 Score=46.77 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 105 ~~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
.+.+.|.|.|.+|||||+-.|.|...+.
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999988874
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.99 E-value=0.27 Score=36.68 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCCHHH-HHHHHHHHh
Q 023106 107 KHIVGLAGPPGAGKST-LAAEVVRRI 131 (287)
Q Consensus 107 GeivgIiGpNGsGKST-Llk~L~Gll 131 (287)
|.+..|+||=.||||| |++.+-.+.
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~ 27 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLE 27 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHH
Confidence 7788999999999999 666665543
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=84.23 E-value=0.34 Score=37.57 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=21.9
Q ss_pred eEEEEECCC-CCCHHHHHHHHHHHhc
Q 023106 108 HIVGLAGPP-GAGKSTLAAEVVRRIN 132 (287)
Q Consensus 108 eivgIiGpN-GsGKSTLlk~L~Gll~ 132 (287)
.++.|.|-+ |+||||+.-.|+..+.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa 27 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAK 27 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHH
Confidence 367899997 9999999999988886
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.59 E-value=0.46 Score=37.41 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.4
Q ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhc
Q 023106 107 KHIVGLA-GPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 107 GeivgIi-GpNGsGKSTLlk~L~Gll~ 132 (287)
|.+|+|. +.-|+||||+.--|+..+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la 28 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALG 28 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 6788888 6688999999999988886
|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF species: Escherichia coli [TaxId: 562]
Probab=83.55 E-value=0.45 Score=36.85 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
|+.+|||.|-| ||||...+|..++.
T Consensus 1 p~kvI~VTGTn--GKTTt~~mi~~iL~ 25 (214)
T d1gg4a4 1 PARVVALTGSS--GKTSVKEMTAAILS 25 (214)
T ss_dssp CCEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC--cHHHHHHHHHHHHH
Confidence 46799999998 59999999999997
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.34 E-value=0.42 Score=35.22 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~Gll 131 (287)
+|.+..|+||=.|||||-|-..+-.+
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~ 26 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRF 26 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEEecccCHHHHHHHHHHHHH
Confidence 58999999999999999765444444
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=82.30 E-value=0.42 Score=38.85 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023106 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (287)
Q Consensus 109 ivgIiGpNGsGKSTLlk~L~Gll~ 132 (287)
+|+|.|.-|+||||+.-.|+..+.
T Consensus 3 ~Iai~gKGGvGKTT~a~nLA~~LA 26 (269)
T d1cp2a_ 3 QVAIYGKGGIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHHHHH
Confidence 688999999999999988888886
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.77 E-value=0.4 Score=38.33 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=17.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH
Q 023106 106 VKHIVGLAGPPGAGKSTLAAEVV 128 (287)
Q Consensus 106 ~GeivgIiGpNGsGKSTLlk~L~ 128 (287)
.|+-+.|++|.|+|||+..-+.+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHHH
Confidence 46667899999999998655444
|