Citrus Sinensis ID: 023130

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MKGISLSPSNHCQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQRRDQNPVPKNPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT
cccccccccccccccHHHHHHHHcccccccccEEEEEccccccccEEEEccccccccccccccccccccEEEEcccccEEEEccccccccccEEEEccEEcccccHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHcccccccEEEEEccccccEEEEEEEcccccEEEEEEccccccccHHHHcHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHcccEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHcccc
ccEEEEccccccHcHHccccHHHHccccccccEEEEcccccccccccEEEEccccccccccccccccccEEEEEEccccEEEEcccccccccEEEcccEEEcccccHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHccccccEEEEEEcccccccEEEEEEccccccEEEEEccccccccHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHccEEcccHHHHHHHcccccccHHHHHHHHHHHHHHHHccc
mkgislspsnhcqLKFQNILAKQlnkpintipfhftitnrqfpahvikcqcqrrdqnpvpknpintppplvvvgsanfDIYVEIDRLPKVGETVAAktsqtlaggkganqaacgaklshptyfvgqvgedangkLITDALsgcgvrldymnvvkdggvptGHAVVMLQsdgqnsiiivggtnmscwpekfgdeDLEVVKKAGIVLLQREIPDSVNIQVAKAArsagvpvifdaggmdapipqELLNFIdilspneselgrltgmptdsyEQISEAVVKCHKMVSVGT
mkgislspsnhCQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQRRDQnpvpknpintppplVVVGSANFDIYVEIDRLPKVGETVAAKtsqtlaggkgANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLlqreipdsvNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT
MKGISLSPSNHCQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQRRDQnpvpknpintpppLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT
***********CQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQR**************PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS**********************AVVKC********
***********CQLKFQNILAKQLN****TI*F*F***N*******************************VVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT
********SNHCQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQRRDQNPVPKNPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQ***********ACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT
*KGISLSPSNHCQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQRRD*********NTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKGISLSPSNHCQLKFQNILAKQLNKPINTIPFHFTITNRQFPAHVIKCQCQRRDQNPVPKNPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
P36945293 Ribokinase OS=Bacillus su yes no 0.637 0.624 0.382 7e-27
P25332 333 Probable ribokinase OS=Sa yes no 0.644 0.555 0.340 7e-20
Q9CF42300 Ribokinase OS=Lactococcus yes no 0.648 0.62 0.344 2e-19
P44331306 Ribokinase OS=Haemophilus yes no 0.655 0.614 0.328 5e-18
Q54UQ4318 Probable ribokinase OS=Di yes no 0.627 0.566 0.289 6e-18
P0A9J6309 Ribokinase OS=Escherichia N/A no 0.714 0.663 0.311 8e-18
P0A9J7309 Ribokinase OS=Escherichia N/A no 0.714 0.663 0.311 8e-18
Q9H477322 Ribokinase OS=Homo sapien yes no 0.686 0.611 0.307 3e-17
Q9K6K1294 Ribokinase OS=Bacillus ha yes no 0.672 0.656 0.333 7e-16
Q8R1Q9323 Ribokinase OS=Mus musculu yes no 0.637 0.566 0.304 3e-15
>sp|P36945|RBSK_BACSU Ribokinase OS=Bacillus subtilis (strain 168) GN=rbsK PE=3 SV=2 Back     alignment and function desciption
 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 104/188 (55%), Gaps = 5/188 (2%)

Query: 70  LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
           + V+GS + D+ V  D+ PK GETV   + QT+ GGKGANQA   A+L    + VG+VG+
Sbjct: 4   ICVIGSCSMDLVVTSDKRPKAGETVLGTSFQTVPGGKGANQAVAAARLGAQVFMVGKVGD 63

Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
           D  G  I + L   GVR DYM  V      T H V+   ++G NSI++V G N    P  
Sbjct: 64  DHYGTAILNNLKANGVRTDYMEPVTHTESGTAHIVL---AEGDNSIVVVKGANDDITP-A 119

Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
           +    LE ++K  +VL+Q+EIP+    +V K   S  +P+I +      P+ QE ++   
Sbjct: 120 YALNALEQIEKVDMVLIQQEIPEETVDEVCKYCHSHDIPIILNPAPAR-PLKQETIDHAT 178

Query: 250 ILSPNESE 257
            L+PNE E
Sbjct: 179 YLTPNEHE 186

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5
>sp|P25332|RBSK_YEAST Probable ribokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBK1 PE=1 SV=2 Back     alignment and function description
>sp|Q9CF42|RBSK_LACLA Ribokinase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|P44331|RBSK_HAEIN Ribokinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|Q54UQ4|RBSK_DICDI Probable ribokinase OS=Dictyostelium discoideum GN=rbsk PE=3 SV=2 Back     alignment and function description
>sp|P0A9J6|RBSK_ECOLI Ribokinase OS=Escherichia coli (strain K12) GN=rbsK PE=1 SV=1 Back     alignment and function description
>sp|P0A9J7|RBSK_ECO57 Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|Q9H477|RBSK_HUMAN Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1 Back     alignment and function description
>sp|Q9K6K1|RBSK_BACHD Ribokinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rbsK PE=3 SV=1 Back     alignment and function description
>sp|Q8R1Q9|RBSK_MOUSE Ribokinase OS=Mus musculus GN=Rbks PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
224117100376 predicted protein [Populus trichocarpa] 0.951 0.726 0.693 1e-102
255577273 389 ribokinase, putative [Ricinus communis] 0.933 0.688 0.674 1e-101
225461828371 PREDICTED: ribokinase [Vitis vinifera] 0.923 0.714 0.631 2e-92
147833687370 hypothetical protein VITISV_007599 [Viti 0.822 0.637 0.702 3e-92
297850114380 pfkB-type carbohydrate kinase family pro 0.947 0.715 0.634 3e-92
358348734 409 Ribokinase [Medicago truncatula] gi|3555 0.895 0.628 0.647 1e-90
5734752378 Similar to ribokinase [Arabidopsis thali 0.780 0.592 0.729 2e-90
15220039379 ribokinase [Arabidopsis thaliana] gi|119 0.780 0.591 0.729 2e-90
145323924355 ribokinase [Arabidopsis thaliana] gi|332 0.780 0.630 0.729 3e-90
388498018360 unknown [Medicago truncatula] 0.895 0.713 0.644 6e-90
>gi|224117100|ref|XP_002317476.1| predicted protein [Populus trichocarpa] gi|222860541|gb|EEE98088.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/290 (69%), Positives = 221/290 (76%), Gaps = 17/290 (5%)

Query: 1   MKGISLSPSNHCQLKFQNILAKQLNKPINTIPFHFTITNRQ--------FPAHVIKCQCQ 52
           MK +S SP+NHC LK Q    KQ   P    P HF     Q        FP+  IK    
Sbjct: 1   MKAVSFSPANHCNLKLQKYPIKQ---PTLANPIHFNNHQNQKPSNKKHHFPSFSIKAS-- 55

Query: 53  RRDQNPVPKNPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAA 112
           +  Q P+ K P NTPP LVVVGSAN DIYVEIDRLP  GET++AKT QTLAGGKGANQAA
Sbjct: 56  KTPQTPLTKYP-NTPP-LVVVGSANADIYVEIDRLPAEGETISAKTGQTLAGGKGANQAA 113

Query: 113 CGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQ 172
           CGAKLS+PTYFVGQVGEDA+GKLIT+AL   GV LD +  + D  VPTGHAVVMLQ DGQ
Sbjct: 114 CGAKLSYPTYFVGQVGEDAHGKLITEALKNGGVNLDCVRNLSD--VPTGHAVVMLQPDGQ 171

Query: 173 NSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232
           NSIIIVGG NMSCWPEK  DEDLEVV+KAG+VLLQREIPD VNIQVAKAA+SAGVPVI D
Sbjct: 172 NSIIIVGGANMSCWPEKLSDEDLEVVRKAGVVLLQREIPDLVNIQVAKAAKSAGVPVILD 231

Query: 233 AGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282
           AGGMDAP+P ELLN +DI SPNESEL RLT M T+S+EQI +AVVKCHKM
Sbjct: 232 AGGMDAPMPPELLNVVDIFSPNESELARLTCMSTESFEQIGQAVVKCHKM 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577273|ref|XP_002529518.1| ribokinase, putative [Ricinus communis] gi|223531002|gb|EEF32856.1| ribokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225461828|ref|XP_002283733.1| PREDICTED: ribokinase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833687|emb|CAN73058.1| hypothetical protein VITISV_007599 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297850114|ref|XP_002892938.1| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338780|gb|EFH69197.1| pfkB-type carbohydrate kinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|358348734|ref|XP_003638398.1| Ribokinase [Medicago truncatula] gi|355504333|gb|AES85536.1| Ribokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|5734752|gb|AAD50017.1|AC007651_12 Similar to ribokinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15220039|ref|NP_173159.1| ribokinase [Arabidopsis thaliana] gi|119360041|gb|ABL66749.1| At1g17160 [Arabidopsis thaliana] gi|332191431|gb|AEE29552.1| ribokinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145323924|ref|NP_001077551.1| ribokinase [Arabidopsis thaliana] gi|332191432|gb|AEE29553.1| ribokinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388498018|gb|AFK37075.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2020337379 AT1G17160 [Arabidopsis thalian 0.735 0.556 0.753 3.9e-83
UNIPROTKB|Q9KN34306 VC_A0131 "Ribokinase" [Vibrio 0.714 0.669 0.319 1.6e-22
TIGR_CMR|VC_A0131306 VC_A0131 "ribokinase" [Vibrio 0.714 0.669 0.319 1.6e-22
SGD|S000000632 333 RBK1 "Putative ribokinase" [Sa 0.644 0.555 0.345 3.4e-22
UNIPROTKB|P0A9J6309 rbsK "ribokinase" [Escherichia 0.721 0.669 0.314 3e-21
UNIPROTKB|E1BJH7325 RBKS "Uncharacterized protein" 0.679 0.6 0.321 1.3e-20
UNIPROTKB|B4DV96286 RBKS "cDNA FLJ60169, highly si 0.714 0.716 0.312 1.7e-20
UNIPROTKB|Q9H477322 RBKS "Ribokinase" [Homo sapien 0.714 0.636 0.312 1.7e-20
TIGR_CMR|SPO_0013290 SPO_0013 "ribokinase" [Ruegeri 0.682 0.675 0.298 3.5e-20
DICTYBASE|DDB_G0280893318 rbsk "ribokinase" [Dictyosteli 0.648 0.584 0.287 4.4e-20
TAIR|locus:2020337 AT1G17160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 162/215 (75%), Positives = 184/215 (85%)

Query:    70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
             LVVVGSAN DIYVEI+RLPK GET++AKT QTLAGGKGANQAACGAKL +PTYFVG++GE
Sbjct:    71 LVVVGSANADIYVEIERLPKEGETISAKTGQTLAGGKGANQAACGAKLMYPTYFVGRLGE 130

Query:   130 DANGKLITDALS--GCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWP 187
             DA+GKLI +AL   GCGV LDY+  V +   PTGHAVVMLQSDGQNSIIIVGG NM  WP
Sbjct:   131 DAHGKLIAEALGDDGCGVHLDYVRSVNNE--PTGHAVVMLQSDGQNSIIIVGGANMKAWP 188

Query:   188 EKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNF 247
             E   D+DLE+V+ AGIVLLQREIPDS+NIQVAKA + AGVPVI D GGMD PIP ELL+ 
Sbjct:   189 EIMSDDDLEIVRNAGIVLLQREIPDSINIQVAKAVKKAGVPVILDVGGMDTPIPNELLDS 248

Query:   248 IDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282
             IDILSPNE+EL RLTGMPT+++EQIS+AV KCHK+
Sbjct:   249 IDILSPNETELSRLTGMPTETFEQISQAVAKCHKL 283
GO:0004747 "ribokinase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006014 "D-ribose metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
UNIPROTKB|Q9KN34 VC_A0131 "Ribokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0131 VC_A0131 "ribokinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
SGD|S000000632 RBK1 "Putative ribokinase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P0A9J6 rbsK "ribokinase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|E1BJH7 RBKS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4DV96 RBKS "cDNA FLJ60169, highly similar to Ribokinase (EC 2.7.1.15)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H477 RBKS "Ribokinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0013 SPO_0013 "ribokinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280893 rbsk "ribokinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
cd01174292 cd01174, ribokinase, Ribokinase catalyses the phos 6e-73
TIGR02152293 TIGR02152, D_ribokin_bact, ribokinase 3e-56
COG0524311 COG0524, RbsK, Sugar kinases, ribokinase family [C 3e-41
PTZ00292326 PTZ00292, PTZ00292, ribokinase; Provisional 2e-35
pfam00294298 pfam00294, PfkB, pfkB family carbohydrate kinase 3e-31
PRK11142306 PRK11142, PRK11142, ribokinase; Provisional 5e-30
cd01942279 cd01942, ribokinase_group_A, Ribokinase-like subgr 9e-21
cd01945284 cd01945, ribokinase_group_B, Ribokinase-like subgr 2e-16
cd01166294 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (Kdg 5e-16
cd01168312 cd01168, adenosine_kinase, Adenosine kinase (AK) c 1e-13
cd01167295 cd01167, bac_FRK, Fructokinases (FRKs) mainly from 4e-13
cd01941288 cd01941, YeiC_kinase_like, YeiC-like sugar kinase 2e-12
cd01164289 cd01164, FruK_PfkB_like, 1-phosphofructokinase (Fr 1e-10
cd01944289 cd01944, YegV_kinase_like, YegV-like sugar kinase 6e-09
TIGR03168303 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructoki 2e-08
TIGR03828304 TIGR03828, pfkB, 1-phosphofructokinase 4e-08
cd01947265 cd01947, Guanosine_kinase_like, Guanosine kinase-l 5e-08
COG1105310 COG1105, FruK, Fructose-1-phosphate kinase and rel 5e-08
cd00287196 cd00287, ribokinase_pfkB_like, ribokinase/pfkB sup 4e-07
cd00287196 cd00287, ribokinase_pfkB_like, ribokinase/pfkB sup 2e-05
cd01940264 cd01940, Fructoselysine_kinase_like, Fructoselysin 2e-05
PLN02323 330 PLN02323, PLN02323, probable fructokinase 9e-05
TIGR02198315 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, 4e-04
PRK09434304 PRK09434, PRK09434, aminoimidazole riboside kinase 0.001
cd01173254 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal 0.002
TIGR01231309 TIGR01231, lacC, tagatose-6-phosphate kinase 0.003
cd01172304 cd01172, RfaE_like, RfaE encodes a bifunctional AD 0.004
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information 
 Score =  225 bits (576), Expect = 6e-73
 Identities = 85/214 (39%), Positives = 114/214 (53%), Gaps = 4/214 (1%)

Query: 69  PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVG 128
            +VVVGS N D+   +DRLPK GETV   + +T  GGKGANQA   A+L      +G VG
Sbjct: 1   KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVG 60

Query: 129 EDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPE 188
           +DA G  + + L   G+ + Y  V    G PTG AV+ +   G+N I++V G N    P 
Sbjct: 61  DDAFGDELLENLREEGIDVSY--VEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPA 118

Query: 189 KFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFI 248
              D  LE++  A ++LLQ EIP    +   +AAR AGV VI +      P+P ELL  +
Sbjct: 119 D-VDAALELIAAADVLLLQLEIPLETVLAALRAARRAGVTVILNPAPAR-PLPAELLALV 176

Query: 249 DILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282
           DIL PNE+E   LTG+     E   +A       
Sbjct: 177 DILVPNETEAALLTGIEVTDEEDAEKAARLLLAK 210

This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution. Length = 292
>gnl|CDD|233751 TIGR02152, D_ribokin_bact, ribokinase Back     alignment and domain information
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional Back     alignment and domain information
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase Back     alignment and domain information
>gnl|CDD|236858 PRK11142, PRK11142, ribokinase; Provisional Back     alignment and domain information
>gnl|CDD|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A Back     alignment and domain information
>gnl|CDD|238920 cd01945, ribokinase_group_B, Ribokinase-like subgroup B Back     alignment and domain information
>gnl|CDD|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP) Back     alignment and domain information
>gnl|CDD|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor Back     alignment and domain information
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase Back     alignment and domain information
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases Back     alignment and domain information
>gnl|CDD|238919 cd01944, YegV_kinase_like, YegV-like sugar kinase Back     alignment and domain information
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family Back     alignment and domain information
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase Back     alignment and domain information
>gnl|CDD|238922 cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar kinases Back     alignment and domain information
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>gnl|CDD|238177 cd00287, ribokinase_pfkB_like, ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>gnl|CDD|238915 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like Back     alignment and domain information
>gnl|CDD|215183 PLN02323, PLN02323, probable fructokinase Back     alignment and domain information
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I Back     alignment and domain information
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional Back     alignment and domain information
>gnl|CDD|238578 cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP Back     alignment and domain information
>gnl|CDD|130298 TIGR01231, lacC, tagatose-6-phosphate kinase Back     alignment and domain information
>gnl|CDD|238577 cd01172, RfaE_like, RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
PRK11142306 ribokinase; Provisional 100.0
PTZ00292326 ribokinase; Provisional 100.0
cd01174292 ribokinase Ribokinase catalyses the phosphorylatio 100.0
PRK15074 434 inosine/guanosine kinase; Provisional 100.0
cd01168312 adenosine_kinase Adenosine kinase (AK) catalyzes t 99.97
PTZ00247345 adenosine kinase; Provisional 99.97
PLN02813 426 pfkB-type carbohydrate kinase family protein 99.97
TIGR02152293 D_ribokin_bact ribokinase. This model describes ri 99.96
PRK09850313 pseudouridine kinase; Provisional 99.96
cd01944289 YegV_kinase_like YegV-like sugar kinase. Found onl 99.96
PLN02341 470 pfkB-type carbohydrate kinase family protein 99.96
PLN02323330 probable fructokinase 99.96
cd01945284 ribokinase_group_B Ribokinase-like subgroup B. Fou 99.96
PLN02967 581 kinase 99.96
cd01942279 ribokinase_group_A Ribokinase-like subgroup A. Fou 99.96
COG0524311 RbsK Sugar kinases, ribokinase family [Carbohydrat 99.96
PLN02543 496 pfkB-type carbohydrate kinase family protein 99.96
cd01166294 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho 99.95
PRK09954362 putative kinase; Provisional 99.95
cd01939290 Ketohexokinase Ketohexokinase (fructokinase, KHK) 99.95
PF00294301 PfkB: pfkB family carbohydrate kinase; InterPro: I 99.95
cd01941288 YeiC_kinase_like YeiC-like sugar kinase. Found in 99.95
PLN02379367 pfkB-type carbohydrate kinase family protein 99.95
cd01167295 bac_FRK Fructokinases (FRKs) mainly from bacteria 99.95
KOG2855330 consensus Ribokinase [Carbohydrate transport and m 99.95
TIGR03828304 pfkB 1-phosphofructokinase. This enzyme acts in co 99.94
cd01947265 Guanosine_kinase_like Guanosine kinase-like sugar 99.94
cd01164289 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 99.94
PRK09434304 aminoimidazole riboside kinase; Provisional 99.94
cd01172304 RfaE_like RfaE encodes a bifunctional ADP-heptose 99.94
TIGR02198315 rfaE_dom_I rfaE bifunctional protein, domain I. Rf 99.94
PRK13508309 tagatose-6-phosphate kinase; Provisional 99.93
PRK09513312 fruK 1-phosphofructokinase; Provisional 99.93
TIGR01231309 lacC tagatose-6-phosphate kinase. This enzyme is p 99.93
PRK10294309 6-phosphofructokinase 2; Provisional 99.93
TIGR03168303 1-PFK hexose kinase, 1-phosphofructokinase family. 99.92
cd01943 328 MAK32 MAK32 kinase. MAK32 is a protein found prima 99.92
PRK11316 473 bifunctional heptose 7-phosphate kinase/heptose 1- 99.92
cd01940264 Fructoselysine_kinase_like Fructoselysine kinase-l 99.92
PLN02548332 adenosine kinase 99.92
COG1105310 FruK Fructose-1-phosphate kinase and related fruct 99.91
KOG2854343 consensus Possible pfkB family carbohydrate kinase 99.89
PRK09813260 fructoselysine 6-kinase; Provisional 99.88
cd01937254 ribokinase_group_D Ribokinase-like subgroup D. Fou 99.87
cd01946277 ribokinase_group_C Ribokinase-like subgroup C. Fou 99.85
PLN02630 335 pfkB-type carbohydrate kinase family protein 99.84
COG2870 467 RfaE ADP-heptose synthase, bifunctional sugar kina 99.82
cd00287196 ribokinase_pfkB_like ribokinase/pfkB superfamily: 99.82
KOG2947308 consensus Carbohydrate kinase [Carbohydrate transp 99.79
KOG3009614 consensus Predicted carbohydrate kinase, contains 98.98
PRK12412268 pyridoxal kinase; Reviewed 98.34
PRK12413253 phosphomethylpyrimidine kinase; Provisional 98.28
cd01169242 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrim 98.06
TIGR00097254 HMP-P_kinase phosphomethylpyrimidine kinase. This 97.96
TIGR00196272 yjeF_cterm yjeF C-terminal region, hydroxyethylthi 97.95
cd01170242 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (T 97.92
cd01173254 pyridoxal_pyridoxamine_kinase Pyridoxal kinase pla 97.89
cd01171254 YXKO-related B.subtilis YXKO protein of unknown fu 97.89
PRK06427266 bifunctional hydroxy-methylpyrimidine kinase/ hydr 97.84
PRK07105 284 pyridoxamine kinase; Validated 97.82
PRK08573 448 phosphomethylpyrimidine kinase; Provisional 97.82
TIGR00687 286 pyridox_kin pyridoxal kinase. ThiD and related pro 97.78
PRK05756 286 pyridoxamine kinase; Validated 97.76
PRK08176281 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpy 97.72
PRK12616270 pyridoxal kinase; Reviewed 97.52
PF08543246 Phos_pyr_kin: Phosphomethylpyrimidine kinase; Inte 97.49
PTZ00344 296 pyridoxal kinase; Provisional 97.47
PRK14039 453 ADP-dependent glucokinase; Provisional 97.3
COG0351263 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidi 97.3
COG2240 281 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe 97.28
PLN02978 308 pyridoxal kinase 97.26
PTZ00347 504 phosphomethylpyrimidine kinase; Provisional 97.02
TIGR02045 446 P_fruct_ADP ADP-specific phosphofructokinase. Phos 96.96
TIGR00694249 thiM hydroxyethylthiazole kinase. This model repre 96.95
PRK09355 263 hydroxyethylthiazole kinase; Validated 96.86
PLN02898 502 HMP-P kinase/thiamin-monophosphate pyrophosphoryla 96.8
PRK03979 463 ADP-specific phosphofructokinase; Provisional 96.65
PF02110246 HK: Hydroxyethylthiazole kinase family; InterPro: 96.44
PRK09517 755 multifunctional thiamine-phosphate pyrophosphoryla 96.41
PRK14038 453 ADP-dependent glucokinase; Provisional 96.39
PRK14713 530 multifunctional hydroxymethylpyrimidine phosphokin 96.23
KOG2599 308 consensus Pyridoxal/pyridoxine/pyridoxamine kinase 96.17
cd01938 445 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and 95.78
PTZ00493 321 phosphomethylpyrimidine kinase; Provisional 95.2
COG2145 265 ThiM Hydroxyethylthiazole kinase, sugar kinase fam 94.64
PF04587 444 ADP_PFK_GK: ADP-specific Phosphofructokinase/Gluco 93.23
PRK10565508 putative carbohydrate kinase; Provisional 91.71
KOG3974 306 consensus Predicted sugar kinase [Carbohydrate tra 90.91
PRK10076213 pyruvate formate lyase II activase; Provisional 90.79
TIGR02826147 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph 83.28
PF01256242 Carb_kinase: Carbohydrate kinase; InterPro: IPR000 82.81
COG1180260 PflA Pyruvate-formate lyase-activating enzyme [Pos 82.2
>PRK11142 ribokinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-32  Score=243.90  Aligned_cols=211  Identities=33%  Similarity=0.529  Sum_probs=182.9

Q ss_pred             CCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCC
Q 023130           67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR  146 (287)
Q Consensus        67 ~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd  146 (287)
                      |++|+|+|++++|+++.++++|.++..+...+....+||++.|+|++|++||.++.++|.+|+|.+|+.+++.|++.||+
T Consensus         2 m~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~   81 (306)
T PRK11142          2 MGKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGID   81 (306)
T ss_pred             CCcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCC
Q 023130          147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG  226 (287)
Q Consensus       147 ~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g  226 (287)
                      ++++.+.+  +.+|+.++++++++|+|+++++.++...++++++. ...+.++.++++++++..+.+.+.++++.|+++|
T Consensus        82 ~~~i~~~~--~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g  158 (306)
T PRK11142         82 TAPVSVIK--GESTGVALIFVNDEGENSIGIHAGANAALTPALVE-AHRELIANADALLMQLETPLETVLAAAKIAKQHG  158 (306)
T ss_pred             hhhEEEcC--CCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHH-HHHhhhccCCEEEEeCCCCHHHHHHHHHHHHHcC
Confidence            99998887  77999999999989999999998876555544442 2235578999999998777788889999999999


Q ss_pred             CcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130          227 VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK  281 (287)
Q Consensus       227 ~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~  281 (287)
                      +++++|++.. ......+++++|++++|++|++.++|....+.++..++++.+.+
T Consensus       159 ~~v~~d~~~~-~~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~  212 (306)
T PRK11142        159 TKVILNPAPA-RELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQ  212 (306)
T ss_pred             CEEEEECCCC-cccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence            9999999854 34557899999999999999999999765566666666665543

>PTZ00292 ribokinase; Provisional Back     alignment and domain information
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information
>PRK15074 inosine/guanosine kinase; Provisional Back     alignment and domain information
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor Back     alignment and domain information
>PTZ00247 adenosine kinase; Provisional Back     alignment and domain information
>PLN02813 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>TIGR02152 D_ribokin_bact ribokinase Back     alignment and domain information
>PRK09850 pseudouridine kinase; Provisional Back     alignment and domain information
>cd01944 YegV_kinase_like YegV-like sugar kinase Back     alignment and domain information
>PLN02341 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PLN02323 probable fructokinase Back     alignment and domain information
>cd01945 ribokinase_group_B Ribokinase-like subgroup B Back     alignment and domain information
>PLN02967 kinase Back     alignment and domain information
>cd01942 ribokinase_group_A Ribokinase-like subgroup A Back     alignment and domain information
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02543 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP) Back     alignment and domain information
>PRK09954 putative kinase; Provisional Back     alignment and domain information
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose Back     alignment and domain information
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases Back     alignment and domain information
>cd01941 YeiC_kinase_like YeiC-like sugar kinase Back     alignment and domain information
>PLN02379 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03828 pfkB 1-phosphofructokinase Back     alignment and domain information
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases Back     alignment and domain information
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases Back     alignment and domain information
>PRK09434 aminoimidazole riboside kinase; Provisional Back     alignment and domain information
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose Back     alignment and domain information
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I Back     alignment and domain information
>PRK13508 tagatose-6-phosphate kinase; Provisional Back     alignment and domain information
>PRK09513 fruK 1-phosphofructokinase; Provisional Back     alignment and domain information
>TIGR01231 lacC tagatose-6-phosphate kinase Back     alignment and domain information
>PRK10294 6-phosphofructokinase 2; Provisional Back     alignment and domain information
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family Back     alignment and domain information
>cd01943 MAK32 MAK32 kinase Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like Back     alignment and domain information
>PLN02548 adenosine kinase Back     alignment and domain information
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09813 fructoselysine 6-kinase; Provisional Back     alignment and domain information
>cd01937 ribokinase_group_D Ribokinase-like subgroup D Back     alignment and domain information
>cd01946 ribokinase_group_C Ribokinase-like subgroup C Back     alignment and domain information
>PLN02630 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only] Back     alignment and domain information
>PRK12412 pyridoxal kinase; Reviewed Back     alignment and domain information
>PRK12413 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1 Back     alignment and domain information
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase Back     alignment and domain information
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related Back     alignment and domain information
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz Back     alignment and domain information
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP Back     alignment and domain information
>cd01171 YXKO-related B Back     alignment and domain information
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed Back     alignment and domain information
>PRK07105 pyridoxamine kinase; Validated Back     alignment and domain information
>PRK08573 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>TIGR00687 pyridox_kin pyridoxal kinase Back     alignment and domain information
>PRK05756 pyridoxamine kinase; Validated Back     alignment and domain information
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed Back     alignment and domain information
>PRK12616 pyridoxal kinase; Reviewed Back     alignment and domain information
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2 Back     alignment and domain information
>PTZ00344 pyridoxal kinase; Provisional Back     alignment and domain information
>PRK14039 ADP-dependent glucokinase; Provisional Back     alignment and domain information
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism] Back     alignment and domain information
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism] Back     alignment and domain information
>PLN02978 pyridoxal kinase Back     alignment and domain information
>PTZ00347 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase Back     alignment and domain information
>TIGR00694 thiM hydroxyethylthiazole kinase Back     alignment and domain information
>PRK09355 hydroxyethylthiazole kinase; Validated Back     alignment and domain information
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase Back     alignment and domain information
>PRK03979 ADP-specific phosphofructokinase; Provisional Back     alignment and domain information
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium [] Back     alignment and domain information
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>PRK14038 ADP-dependent glucokinase; Provisional Back     alignment and domain information
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional Back     alignment and domain information
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK) Back     alignment and domain information
>PTZ00493 phosphomethylpyrimidine kinase; Provisional Back     alignment and domain information
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism] Back     alignment and domain information
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ] Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10076 pyruvate formate lyase II activase; Provisional Back     alignment and domain information
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase Back     alignment and domain information
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3ry7_A304 Crystal Sructure Of Sa239 Length = 304 9e-24
1vm7_A311 Crystal Structure Of Ribokinase (Tm0960) From Therm 7e-20
1rk2_A309 E. Coli Ribokinase Complexed With Ribose And Adp, S 4e-19
2fv7_A331 Crystal Structure Of Human Ribokinase Length = 331 3e-18
3go6_A310 Crystal Structure Of M. Tuberculosis Ribokinase (Rv 1e-09
3i3y_A299 Crystal Structure Of Ribokinase In Complex With D-R 1e-04
2jgv_A330 Structure Of Staphylococcus Aureus D-Tagatose-6-Pho 2e-04
3h49_A325 Crystal Structure Of A Putative Ribokinase (Apo For 2e-04
2jg1_A330 Structure Of Staphylococcus Aureus D-Tagatose-6-Pho 5e-04
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239 Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Query: 70  LVVVGSANFDIYVEIDRLPKVGETVAAKTSQ-TLAGGKGANQAACGAKLSHPTYFVGQVG 128
           +V++GS N D ++ ++R  + GET+  + +Q    GGKGANQA   A++   T F+ ++G
Sbjct: 5   VVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIG 64
Query: 129 EDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPE 188
            D     I +      +   Y  ++K     TG A + + ++GQN+I + GG NM+  PE
Sbjct: 65  TDGVADFILEDFKVAHIDTSY--IIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPE 122
Query: 189 KFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFI 248
              +   + +  A  V+ Q E+P    I   + A++ GV  + +     A +P ELL+ I
Sbjct: 123 DVINAK-DAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKA-LPNELLSLI 180
Query: 249 DILSPNESELGRLTGM 264
           DI+ PNE+E   L+G+
Sbjct: 181 DIIVPNETEAELLSGI 196
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga Maritima At 2.15 A Resolution Length = 311 Back     alignment and structure
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved In Space Group P212121 Length = 309 Back     alignment and structure
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase Length = 331 Back     alignment and structure
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436) In Complex With Ribose And Amp-Pnp Length = 310 Back     alignment and structure
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose From Klebsiella Pneumoniae Length = 299 Back     alignment and structure
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate Kinase In Complex With Adp Length = 330 Back     alignment and structure
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From E.Coli At 1.8a Resolution Length = 325 Back     alignment and structure
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate Kinase With Cofactor And Substrate Length = 330 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
1vm7_A311 Ribokinase; TM0960, structural genomics, JCSG, pro 4e-72
2rbc_A343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 1e-68
1rkd_A309 Ribokinase; carbohydrate kinase, ribose, nucleotid 1e-68
2fv7_A331 Ribokinase; structural genomics, structural genomi 4e-67
3kzh_A 328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 7e-66
3ry7_A304 Ribokinase; transferase; 2.15A {Staphylococcus aur 1e-65
3go6_A310 Ribokinase RBSK; phosphofructokinase, carbohydrate 5e-65
3ikh_A299 Carbohydrate kinase; transferase,kinase,SAD,ribose 1e-61
2nwh_A317 AGR_C_3442P, carbohydrate kinase; structural genom 2e-61
2c4e_A302 Sugar kinase MJ0406; transferase, nucleoside kinas 2e-55
3b1n_A 326 Ribokinase, putative; rossmann fold, ATP binding, 6e-48
3h49_A325 Ribokinase; transferase,PFKB family,sugar kinase Y 1e-47
2pkf_A334 Adenosine kinase; transferase, S genomics, TB stru 4e-47
3bf5_A306 Ribokinase related protein; 10640157, putative rib 3e-45
2hlz_A312 Ketohexokinase; non-protein kinase, creatine kinas 2e-44
1vk4_A298 PFKB carbohydrate kinase TM0415; structural genomi 2e-27
3kd6_A 313 Carbohydrate kinase, PFKB family; nucleoside kinas 7e-26
1tyy_A339 Putative sugar kinase; ribokinase fold, alpha/beta 4e-24
3iq0_A 330 Putative ribokinase II; transferase,kinase,SAD,rib 3e-21
2qhp_A296 Fructokinase; NP_810670.1, PFKB family carbohydrat 8e-21
3pl2_A319 Sugar kinase, ribokinase family; PFKB PFAM motif, 9e-16
4du5_A336 PFKB; structural genomics, PSI-biology, NEW YORK s 9e-16
1v1a_A309 2-keto-3-deoxygluconate kinase; ATP, structural ge 2e-15
3ljs_A 338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 2e-15
3hj6_A327 Fructokinase, FRK; fructose, transferase, carbohyd 1e-14
3loo_A365 Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad 4e-14
1bx4_A345 Protein (adenosine kinase); human adenosine kinase 5e-14
3otx_A347 Adenosine kinase, putative; AP5A, transferase-tran 5e-14
2qcv_A332 Putative 5-dehydro-2-deoxygluconokinase; structura 6e-14
2dcn_A311 Hypothetical fructokinase; 2-keto-3-deoxygluconate 2e-13
3ewm_A313 Uncharacterized sugar kinase PH1459; carbohydrate 2e-12
4e3a_A352 Sugar kinase protein; structural genomics, protein 2e-12
3ktn_A 346 Carbohydrate kinase, PFKB family; PFKB family,ribo 4e-12
2afb_A 351 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro- 1e-11
2abq_A306 Fructose 1-phosphate kinase; dimer, structural gen 1e-10
2abs_A 383 Adenosine kinase, AK; ribokinase fold, alpha/beta, 2e-10
3ie7_A320 LIN2199 protein; phosphofructokinases, transferase 2e-10
2jg5_A306 Fructose 1-phosphate kinase; 1-phosphofructokinase 4e-10
3cqd_A309 6-phosphofructokinase isozyme 2; phosphofructokina 5e-10
3lhx_A319 Ketodeoxygluconokinase; structural genomics, PSI-2 9e-10
2f02_A 323 Tagatose-6-phosphate kinase; LACC, structural geno 1e-09
2jg1_A330 Tagatose-6-phosphate kinase; phosphoryl transfer, 4e-09
4e69_A328 2-dehydro-3-deoxygluconokinase; putative sugar kin 7e-09
2v78_A313 Fructokinase; transferase, PFKB family carbohydrat 2e-08
2ajr_A331 Sugar kinase, PFKB family; TM0828, possible 1-phos 1e-06
3dzv_A 273 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_ 3e-06
1v8a_A 265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 7e-06
1ekq_A 272 Hydroxyethylthiazole kinase; alpha-beta, transfera 1e-04
3pzs_A 289 PM kinase, pyridoxamine kinase; structural genomic 1e-04
3zs7_A 300 Pyridoxal kinase; transferase, sleeping sickness; 2e-04
2ddm_A283 Pyridoxine kinase; pyridoxal kinase, ribokinase, p 3e-04
2yxt_A 312 Pyridoxal kinase; beta sheet with alpha helix, met 7e-04
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Length = 311 Back     alignment and structure
 Score =  223 bits (570), Expect = 4e-72
 Identities = 66/213 (30%), Positives = 96/213 (45%), Gaps = 13/213 (6%)

Query: 71  VVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKL-SHPTYFVGQVGE 129
            VVGS+N DI +++D   K GET  A       GGKGANQA   AK+      FV  +G 
Sbjct: 18  SVVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGN 77

Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
           D    L+ +     G+            +PTG A + +   GQN III  G N     E 
Sbjct: 78  DDYSDLLIENYEKLGI-----TGYIRVSLPTGRAFIEVDKTGQNRIIIFPGANAELKKE- 131

Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
               D   + ++ I+LLQ EIP        + A+     VIFD       I +E+  ++D
Sbjct: 132 --LIDWNTLSESDILLLQNEIPFET---TLECAKRFNGIVIFDPAPA-QGINEEIFQYLD 185

Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282
            L+PNE E+  L+      +  + +A  K  ++
Sbjct: 186 YLTPNEKEIEALSKDFFGEFLTVEKAAEKFLEL 218
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Length = 343 Back     alignment and structure
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Length = 309 Back     alignment and structure
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Length = 331 Back     alignment and structure
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328 Back     alignment and structure
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Length = 304 Back     alignment and structure
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Length = 310 Back     alignment and structure
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Length = 299 Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317 Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Length = 302 Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Length = 326 Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325 Back     alignment and structure
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Length = 334 Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Length = 306 Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Length = 312 Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298 Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313 Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339 Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Length = 330 Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 296 Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} Length = 319 Back     alignment and structure
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Length = 336 Back     alignment and structure
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Length = 309 Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338 Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Length = 327 Back     alignment and structure
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Length = 365 Back     alignment and structure
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Length = 345 Back     alignment and structure
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Length = 347 Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Length = 332 Back     alignment and structure
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311 Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Length = 313 Back     alignment and structure
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Length = 352 Back     alignment and structure
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Length = 346 Back     alignment and structure
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Length = 351 Back     alignment and structure
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Length = 306 Back     alignment and structure
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Length = 383 Back     alignment and structure
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Length = 320 Back     alignment and structure
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Length = 306 Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Length = 309 Back     alignment and structure
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Length = 319 Back     alignment and structure
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Length = 323 Back     alignment and structure
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Length = 330 Back     alignment and structure
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Length = 328 Back     alignment and structure
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Length = 313 Back     alignment and structure
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Length = 331 Back     alignment and structure
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis} Length = 273 Back     alignment and structure
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} SCOP: c.72.1.2 PDB: 3hpd_A Length = 265 Back     alignment and structure
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A* Length = 272 Back     alignment and structure
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} PDB: 1td2_A* 1vi9_A* Length = 289 Back     alignment and structure
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei} Length = 300 Back     alignment and structure
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A* Length = 283 Back     alignment and structure
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
1rkd_A309 Ribokinase; carbohydrate kinase, ribose, nucleotid 100.0
2fv7_A331 Ribokinase; structural genomics, structural genomi 100.0
3ry7_A304 Ribokinase; transferase; 2.15A {Staphylococcus aur 100.0
2rbc_A 343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 100.0
3kzh_A 328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 100.0
1vm7_A311 Ribokinase; TM0960, structural genomics, JCSG, pro 100.0
3go6_A310 Ribokinase RBSK; phosphofructokinase, carbohydrate 99.98
3ikh_A299 Carbohydrate kinase; transferase,kinase,SAD,ribose 99.98
2hlz_A312 Ketohexokinase; non-protein kinase, creatine kinas 99.97
3vas_A370 Putative adenosine kinase; ribokinase, enzyme, tra 99.97
2nwh_A317 AGR_C_3442P, carbohydrate kinase; structural genom 99.97
2c4e_A302 Sugar kinase MJ0406; transferase, nucleoside kinas 99.97
4e3a_A352 Sugar kinase protein; structural genomics, protein 99.97
3ljs_A 338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 99.97
3loo_A365 Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad 99.97
3iq0_A 330 Putative ribokinase II; transferase,kinase,SAD,rib 99.97
3otx_A347 Adenosine kinase, putative; AP5A, transferase-tran 99.97
3hj6_A327 Fructokinase, FRK; fructose, transferase, carbohyd 99.97
3ktn_A 346 Carbohydrate kinase, PFKB family; PFKB family,ribo 99.97
4du5_A336 PFKB; structural genomics, PSI-biology, NEW YORK s 99.97
3lhx_A319 Ketodeoxygluconokinase; structural genomics, PSI-2 99.97
4e69_A328 2-dehydro-3-deoxygluconokinase; putative sugar kin 99.96
1bx4_A345 Protein (adenosine kinase); human adenosine kinase 99.96
2pkf_A334 Adenosine kinase; transferase, S genomics, TB stru 99.96
3pl2_A319 Sugar kinase, ribokinase family; PFKB PFAM motif, 99.96
3umo_A309 6-phosphofructokinase isozyme 2; glycolysis, trans 99.96
3uq6_A372 Adenosine kinase, putative; ribokinase, transferas 99.96
1v1a_A309 2-keto-3-deoxygluconate kinase; ATP, structural ge 99.96
3h49_A325 Ribokinase; transferase,PFKB family,sugar kinase Y 99.96
3b1n_A 326 Ribokinase, putative; rossmann fold, ATP binding, 99.96
2ajr_A331 Sugar kinase, PFKB family; TM0828, possible 1-phos 99.96
4gm6_A 351 PFKB family carbohydrate kinase; enzyme function i 99.96
2abs_A383 Adenosine kinase, AK; ribokinase fold, alpha/beta, 99.96
3cqd_A309 6-phosphofructokinase isozyme 2; phosphofructokina 99.96
2qcv_A332 Putative 5-dehydro-2-deoxygluconokinase; structura 99.96
2f02_A 323 Tagatose-6-phosphate kinase; LACC, structural geno 99.96
2jg1_A330 Tagatose-6-phosphate kinase; phosphoryl transfer, 99.96
2v78_A313 Fructokinase; transferase, PFKB family carbohydrat 99.96
4e84_A352 D-beta-D-heptose 7-phosphate kinase; LPS-heptose b 99.96
3ie7_A320 LIN2199 protein; phosphofructokinases, transferase 99.95
1tyy_A339 Putative sugar kinase; ribokinase fold, alpha/beta 99.95
2dcn_A311 Hypothetical fructokinase; 2-keto-3-deoxygluconate 99.95
3bf5_A306 Ribokinase related protein; 10640157, putative rib 99.95
2abq_A306 Fructose 1-phosphate kinase; dimer, structural gen 99.95
2jg5_A306 Fructose 1-phosphate kinase; 1-phosphofructokinase 99.95
3ewm_A313 Uncharacterized sugar kinase PH1459; carbohydrate 99.95
2afb_A 351 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro- 99.94
2qhp_A296 Fructokinase; NP_810670.1, PFKB family carbohydrat 99.94
3kd6_A 313 Carbohydrate kinase, PFKB family; nucleoside kinas 99.91
1vk4_A298 PFKB carbohydrate kinase TM0415; structural genomi 99.9
2yxt_A 312 Pyridoxal kinase; beta sheet with alpha helix, met 99.2
2ddm_A283 Pyridoxine kinase; pyridoxal kinase, ribokinase, p 98.85
1jxh_A288 Phosphomethylpyrimidine kinase; THID, ribokinase f 98.79
1ub0_A258 THID, phosphomethylpyrimidine kinase; thiamin bios 98.69
2i5b_A271 Phosphomethylpyrimidine kinase; ADP complex, PDXK, 98.46
1ekq_A 272 Hydroxyethylthiazole kinase; alpha-beta, transfera 98.17
3pzs_A 289 PM kinase, pyridoxamine kinase; structural genomic 97.93
3zs7_A 300 Pyridoxal kinase; transferase, sleeping sickness; 97.88
3h74_A 282 Pyridoxal kinase; PSI-II, structural genomics, pro 97.82
3mbh_A 291 Putative phosphomethylpyrimidine kinase; structura 97.81
3drw_A 474 ADP-specific phosphofructokinase; AMP, GLYC kinase 97.42
1v8a_A 265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 97.23
3rm5_A 550 Hydroxymethylpyrimidine/phosphomethylpyrimidine K 97.12
3dzv_A 273 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_ 96.8
1ua4_A 455 Glucokinase, ADP-dependent glucokinase; transferas 96.73
3rpz_A279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 96.58
3nl6_A 540 Thiamine biosynthetic bifunctional enzyme; thiamin 96.57
3hpd_A 265 Hydroxyethylthiazole kinase; alpha-beta, ATP bindi 96.21
3bgk_A311 SMU.573, putative uncharacterized protein; alpha/b 96.11
2r3b_A 310 YJEF-related protein; putative kinase in the ribok 95.98
1gc5_A 467 ADP-dependent glucokinase; ALFA/beta sandwichs, in 95.93
1l2l_A 457 ADP-dependent glucokinase; ADP glucokinase APO, tr 95.91
3rss_A502 Putative uncharacterized protein; unknown function 95.27
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-34  Score=257.55  Aligned_cols=214  Identities=30%  Similarity=0.464  Sum_probs=186.9

Q ss_pred             CCCCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCC
Q 023130           65 NTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG  144 (287)
Q Consensus        65 ~~~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~g  144 (287)
                      +++++|+|+|++++|+++.++++|..++.+........+||+++|+|+++++||.++.++|.+|+|.+|+++++.|++.|
T Consensus         2 ~~~~~v~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~g   81 (309)
T 1rkd_A            2 QNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDN   81 (309)
T ss_dssp             --CCEEEEECCCEEEEEEECSSCCCTTCCCCCCCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHHHHHHHHTTT
T ss_pred             CCCCeEEEECcceEeEEEecCCCCCCCCeeecCceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHHHHHHHHHcC
Confidence            34568999999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHh
Q 023130          145 VRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARS  224 (287)
Q Consensus       145 Vd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~  224 (287)
                      |+++++.+.+  +.+|+.++++++++|+|+++.+.+++..++++++. ...+.++.++++++++..+.+.+.++++.+++
T Consensus        82 v~~~~v~~~~--~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~  158 (309)
T 1rkd_A           82 IDITPVSVIK--GESTGVALIFVNGEGENVIGIHAGANAALSPALVE-AQRERIANASALLMQLESPLESVMAAAKIAHQ  158 (309)
T ss_dssp             EECTTEEEET--TCCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHH-TTHHHHHHCSEEEECSSSCHHHHHHHHHHHHH
T ss_pred             CCccceEecC--CCCCceEEEEECCCCCeEEEEeCCchhcCCHHHHH-HHHHhcccCCEEEEeCCCCHHHHHHHHHHHHH
Confidence            9999999877  77999999999988999998888876555544442 22345788999999998888888999999999


Q ss_pred             CCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhhh
Q 023130          225 AGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM  282 (287)
Q Consensus       225 ~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~~  282 (287)
                      +|+++++|++.. ..+...+++++|++++|++|++.|+|.+..+.+++.+++++|.++
T Consensus       159 ~g~~v~~D~~~~-~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~  215 (309)
T 1rkd_A          159 NKTIVALNPAPA-RELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEK  215 (309)
T ss_dssp             TTCEEEECCCSC-CCCCHHHHTTCSEECCCHHHHHHHHSCCCSSHHHHHHHHHHHHHT
T ss_pred             cCCEEEEECCcc-ccchHHHHhhCCEEEcCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence            999999999876 356678999999999999999999997666677777777777653
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Back     alignment and structure
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Back     alignment and structure
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Back     alignment and structure
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Back     alignment and structure
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Back     alignment and structure
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A* Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Back     alignment and structure
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A* Back     alignment and structure
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A Back     alignment and structure
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Back     alignment and structure
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Back     alignment and structure
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Back     alignment and structure
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Back     alignment and structure
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Back     alignment and structure
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Back     alignment and structure
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0 Back     alignment and structure
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A* Back     alignment and structure
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A* Back     alignment and structure
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Back     alignment and structure
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601} Back     alignment and structure
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Back     alignment and structure
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Back     alignment and structure
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Back     alignment and structure
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A* Back     alignment and structure
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Back     alignment and structure
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Back     alignment and structure
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Back     alignment and structure
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* Back     alignment and structure
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A* Back     alignment and structure
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A* Back     alignment and structure
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2 Back     alignment and structure
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis} Back     alignment and structure
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A* Back     alignment and structure
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A* Back     alignment and structure
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei} Back     alignment and structure
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A* Back     alignment and structure
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A* Back     alignment and structure
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A Back     alignment and structure
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A Back     alignment and structure
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae} Back     alignment and structure
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis} Back     alignment and structure
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3 Back     alignment and structure
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Back     alignment and structure
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* Back     alignment and structure
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii} Back     alignment and structure
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans} Back     alignment and structure
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A Back     alignment and structure
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3 Back     alignment and structure
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3 Back     alignment and structure
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d2fv7a1308 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien 2e-21
d1rkda_306 c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 5e-21
d1vm7a_299 c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax 1e-20
d2ajra1319 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T 7e-19
d1vk4a_288 c.72.1.1 (A:) Hypothetical protein TM0415 {Thermot 4e-17
d2f02a1313 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac 1e-13
d2abqa1306 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru 1e-13
d2afba1 333 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase 7e-13
d1tyya_304 c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm 7e-12
d1v19a_302 c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther 1e-10
d2dcna1308 c.72.1.1 (A:2-309) Hypothetical fructokinase ST247 9e-10
d1v8aa_ 264 c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kin 1e-05
d2absa1 350 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma g 2e-05
d1bx4a_342 c.72.1.1 (A:) Adenosine kinase {Human (Homo sapien 4e-04
d1ekqa_ 269 c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kin 0.001
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (221), Expect = 2e-21
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 3/213 (1%)

Query: 70  LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
           +VVVGS   D+     RLPK GET+         GGKGANQ    A+L   T  V +VG+
Sbjct: 4   VVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGK 63

Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
           D+ G    + L    +  ++    KD    TG A +++ ++GQN I+IV          +
Sbjct: 64  DSFGNDYIENLKQNDISTEFTYQTKDA--ATGTASIIVNNEGQNIIVIV-AGANLLLNTE 120

Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
                  V+ +A +++ Q EI  + +++    AR +GV  +F+     A +  +     D
Sbjct: 121 DLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSD 180

Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282
           +   NESE   LTG+   S     EA +   K 
Sbjct: 181 VFCCNESEAEILTGLTVGSAADAGEAALVLLKR 213
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Length = 306 Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299 Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319 Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Length = 288 Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313 Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306 Back     information, alignment and structure
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304 Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308 Back     information, alignment and structure
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 264 Back     information, alignment and structure
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Length = 350 Back     information, alignment and structure
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 342 Back     information, alignment and structure
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d2fv7a1308 Ribokinase {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1vm7a_299 Ribokinase {Thermotoga maritima [TaxId: 2336]} 99.93
d1rkda_306 Ribokinase {Escherichia coli [TaxId: 562]} 99.92
d2afba1 333 2-keto-3-deoxygluconate kinase {Thermotoga maritim 99.92
d2ajra1319 Putative sugar kinase TM0828 {Thermotoga maritima 99.91
d1bx4a_342 Adenosine kinase {Human (Homo sapiens) [TaxId: 960 99.9
d2abqa1306 Fructose 1-phosphate kinase FruB {Bacillus halodur 99.9
d2f02a1313 Tagatose-6-phosphate kinase LacC {Enterococcus fae 99.89
d2absa1 350 Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} 99.88
d1v19a_302 2-keto-3-deoxygluconate kinase {Thermus thermophil 99.87
d1tyya_304 Aminoimidazole riboside kinase {Salmonella typhimu 99.82
d2dcna1308 Hypothetical fructokinase ST2478 {Sulfolobus tokod 99.82
d1vk4a_288 Hypothetical protein TM0415 {Thermotoga maritima [ 99.78
d1lhpa_ 309 Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940] 97.46
d1vi9a_ 288 Pyridoxamine kinase {Escherichia coli [TaxId: 562] 97.45
d1ekqa_ 269 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ba 97.26
d1ub0a_258 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 97.2
d1v8aa_ 264 Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Ar 96.68
d1jxha_266 4-amino-5-hydroxymethyl-2-methylpyrimidine phospha 96.17
d1u2xa_ 450 ADP-specific phosphofructokinase {Pyrococcus horik 96.15
d1ua4a_ 454 ADP-dependent glucokinase {Archaeon Pyrococcus fur 94.69
d1l2la_ 451 ADP-dependent glucokinase {Archaeon Thermococcus l 94.26
d1gc5a_ 467 ADP-dependent glucokinase {Archaeon Thermococcus l 93.6
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 92.68
d2ax3a1278 Hypothetical protein TM0922, C-terminal domain {Th 85.12
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 80.54
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.2e-25  Score=191.99  Aligned_cols=212  Identities=31%  Similarity=0.426  Sum_probs=179.1

Q ss_pred             CCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCC
Q 023130           67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR  146 (287)
Q Consensus        67 ~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd  146 (287)
                      +..|+|+|++++|+++.++++|.+|+++.+..+..++||+++|+|++|++||.+|.++|.+|+|.+|+.+.+.|++.||+
T Consensus         1 ~~~i~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~Nva~~l~~lg~~v~~is~vG~D~~g~~i~~~L~~~gi~   80 (308)
T d2fv7a1           1 VAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDIS   80 (308)
T ss_dssp             CCSEEEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHTTTEE
T ss_pred             CCEEEEEChhheEeEeecCCCCCCCceEeeceEEEecCCHHHHHHHHHHHCCCCEEEEEEeccccccccccchhcccccc
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCC
Q 023130          147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG  226 (287)
Q Consensus       147 ~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g  226 (287)
                      ++++...+  ..+|..++++++.+|++++..+.+....+....+. ..........+..+.....++......+.+++.+
T Consensus        81 ~~~i~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (308)
T d2fv7a1          81 TEFTYQTK--DAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLR-AAANVISRAKVMVCQLEITPATSLEALTMARRSG  157 (308)
T ss_dssp             CTTEEEES--SSCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHH-HTHHHHHHCSEEEECSSSCHHHHHHHHHHHHHTT
T ss_pred             cccccccc--cccccceEEEEecCCceEEEeeecchhhhchhhhh-hhhhhcccceEEeeccccchHHHHHHHHHhhhcC
Confidence            99999988  77888889999999999998877655443332221 2234455566777777777888889999999999


Q ss_pred             CcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130          227 VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK  281 (287)
Q Consensus       227 ~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~  281 (287)
                      .++++|+......+........+++..|..|.+...+....+..+......++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  212 (308)
T d2fv7a1         158 VKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLK  212 (308)
T ss_dssp             CEEEECCCSCCTTCCTHHHHTCSEEEEEHHHHHHHHSSCCCSHHHHHHHHHHHHT
T ss_pred             ceEEecccchhhhhhhhHHhhhhhhhhhHHHHHHhhhhhccchhhhhhHHHHHHh
Confidence            9999999877666667777889999999999998888766777777777766654
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lhpa_ c.72.1.5 (A:) Pyridoxal kinase {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase, ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure