Citrus Sinensis ID: 023134

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEccHHHHcccccccHEEccccccc
Coil and Loop (DISEMBL)
mfhapalrswisssrspiimaskskthrlhqlsGTALqsiakrprtittesYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKElqgtdfwklrrayspgVQEYVEAATFCKFCRTGTLLDLeelnagllplsdpaieplqiNVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVplmdnnsdmkTKMDTMLQSVLKIENACLSVHvrgseytllgssdpsflmgvpdmqs
Flexible Loop (DISEMBL)
mfhapalrswisssrspIIMASkskthrlhqlsgtalqsiakrprtittesyMKDAFANYAGYLNELNEKRErvvkssrditinskkvifqvhsrdnkeEVLKKAEADLEAVKDQYISRLvkelqgtdfwkLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEytllgssdpsflmgvpdmqs
Low Complexity Region (SEG)
MFHAPALrswisssrspiiMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTlldleelnagllplSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Disordered region (IsUnstruct)
*********************************************TITTESYMKDAFANYAGYLNELNEKR*RVVK**RDITINSKKVIFQVH*************ADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS**KTKMDTMLQSVLKIENACLSVHVRGSEYTLL****************
Disordered Region (DISOPRED)
********************************************************FANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNK*EVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPS***G******
Disordered Region (DISEMBL)
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Disordered Region (DISPRO)
*************************************************ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMG*P****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSxxxxxxxxxxxxxxxxxxxxxYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q9JHB5	290	Translin-associated prote	yes	no	0.717	0.710	0.361	2e-33
Q9QZE7	290	Translin-associated prote	yes	no	0.717	0.710	0.361	4e-33
Q4R599	290	Translin-associated prote	N/A	no	0.717	0.710	0.361	4e-33
Q5RC21	290	Translin-associated prote	yes	no	0.717	0.710	0.357	1e-32
Q99598	290	Translin-associated prote	yes	no	0.717	0.710	0.357	1e-32
O74955	231	Translin-associated prote	yes	no	0.700	0.870	0.299	2e-20
Q57639	222	Uncharacterized protein M	yes	no	0.547	0.707	0.262	0.0005

>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 139/235 (59%), Gaps = 29/235 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + EE+L ++E+ L+ V
Sbjct: 38  AFKSFQQELDTRHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 172
           + Q + ++ +EL G D  +  RA + G+QEYVEA +F  F RT +L+ +EE+N  L   +
Sbjct: 98  R-QKMLQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRTRSLISMEEINRQLTFTT 156

Query: 173 DPAIEP-----------------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
           D + +                  L+I   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 DDSGKESKAPPADGQDKQLVTWRLKITPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLSKVENACYALKVRGSE 266

Possible role in spermatogenesis.
Rattus norvegicus (taxid: 10116)

>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 139/235 (59%), Gaps = 29/235 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + EE+L ++E+ L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 172
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ +EE+N  L   +
Sbjct: 98  R-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFTA 156

Query: 173 D--------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
           +        P  E          L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 139/235 (59%), Gaps = 29/235 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 169
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 170 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
                    P SD   E      L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 DDNGKENKTPSSDTQDEQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Macaca fascicularis (taxid: 9541)

>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 139/235 (59%), Gaps = 29/235 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 169
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 170 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
                    P SD   +      L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 139/235 (59%), Gaps = 29/235 (12%)

Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97

Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 169
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +L+ ++E+N  L+   
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156

Query: 170 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
                    P SD   +      L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216

Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

Possible role in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 117/217 (53%), Gaps = 16/217 (7%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAV 112
           M++ F ++  +L E  +KRE++++ SR+ITI SK++IF +H   + +      + D  ++
Sbjct: 1   MEEEFLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSI 60

Query: 113 KDQYISR----LVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGL 168
            ++ I +    L +EL G +  K   A + G+QEYVEA TF  + +TGTLL  +      
Sbjct: 61  FEKKIHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCK------ 114

Query: 169 LPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELT 228
               D +   + IN  DY+LG+ D+TGE+MR  +   S   ++   +  +F R +++  +
Sbjct: 115 ----DSSFR-ISINFIDYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCS 169

Query: 229 LVVPLMDN-NSDMKTKMDTMLQSVLKIENACLSVHVR 264
            +  L     S+++ K+  M  S+ K+E  C S  +R
Sbjct: 170 EIEHLPSKVKSELQQKLSVMENSISKVEGICYSKILR 206

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q57639|Y175_METJA Uncharacterized protein MJ0175 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0175 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 30/187 (16%)

Query: 45  RTITTESYMK------DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNK 98
           + I T  Y+K      D       YL   +  RE ++K SR+IT +   +I ++H  D+K
Sbjct: 3   KQILTIGYIKFLVVAMDELNYLINYLANKDSVREEILKLSREITRDCAMLIRKIHKSDDK 62

Query: 99  EEVLKKAEADLEAVKDQYISRLVKELQG-TDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 157
           +E   K            IS  +K+L     F +     S   QE+VEA +         
Sbjct: 63  DEFKDKLNE---------ISEKIKKLNSLATFPEFVGYLSTPQQEFVEALSLYMIKFDNK 113

Query: 158 LLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKIC 217
           +   +EL+               I   +Y+LGLAD+ GEL R  +  + +  L   E+  
Sbjct: 114 IPSFKELDF--------------IKEENYILGLADVIGELRREVLEAMKNDNLAEVERYF 159

Query: 218 RFSRDIY 224
           +F  D+Y
Sbjct: 160 KFMEDLY 166

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
359386148	270	translin-associated factor X [Citrus sin	0.933	0.992	0.977	1e-152
449452825	284	PREDICTED: translin-associated protein X	0.933	0.943	0.768	1e-115
297738200	270	unnamed protein product [Vitis vinifera]	0.912	0.970	0.759	1e-112
225424991	282	PREDICTED: translin-associated protein X	0.912	0.929	0.759	1e-112
357516891	315	Translin-associated protein X [Medicago	0.972	0.885	0.668	1e-112
224108631	307	predicted protein [Populus trichocarpa]	0.930	0.869	0.717	1e-112
363807852	281	uncharacterized protein LOC100776523 [Gl	0.940	0.960	0.698	1e-109
297818030	287	translin family protein [Arabidopsis lyr	0.919	0.919	0.697	1e-107
30678076	287	translin-like protein [Arabidopsis thali	0.937	0.937	0.688	1e-107
255541928	257	translin associated factor X, putative [	0.843	0.941	0.766	1e-106

>gi|359386148|gb|AEV43363.1| translin-associated factor X [Citrus sinensis]

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/270 (97%), Positives = 266/270 (98%), Gaps = 2/270 (0%)

Query: 20  MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSR 79
           MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVK+SR
Sbjct: 1   MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKASR 60

Query: 80  DITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYS 137
           DITINSKKVIFQVH  SRDNKEEVLKKAEADL AVKDQYISRLVKELQGTDFWKLRRAYS
Sbjct: 61  DITINSKKVIFQVHRISRDNKEEVLKKAEADLVAVKDQYISRLVKELQGTDFWKLRRAYS 120

Query: 138 PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGEL 197
           PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINV DYLLGLADLTGEL
Sbjct: 121 PGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVLDYLLGLADLTGEL 180

Query: 198 MRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 257
           MRLAIGRISDGEL+FAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA
Sbjct: 181 MRLAIGRISDGELDFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 240

Query: 258 CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS 287
           CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS
Sbjct: 241 CLSVHVRGSEYTLLGSSDPSFLMGVPDMQS 270

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452825|ref|XP_004144159.1| PREDICTED: translin-associated protein X-like [Cucumis sativus] gi|449523668|ref|XP_004168845.1| PREDICTED: translin-associated protein X-like [Cucumis sativus]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/272 (76%), Positives = 236/272 (86%), Gaps = 4/272 (1%)

Query: 19  IMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSS 78
           +MASK K   LH ++ TA+QS  KR R ++T+S MKDAFA YA YLN LN+KRERVVK+S
Sbjct: 12  LMASKPKPQLLHTIAETAVQSSVKRARILSTQSSMKDAFAKYAEYLNNLNDKRERVVKAS 71

Query: 79  RDITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAY 136
           RDIT+NSKKVIFQVH  S+ NKEEVL+KAE DL  V   +ISRLVKELQGTDFWKLRRAY
Sbjct: 72  RDITMNSKKVIFQVHRISKQNKEEVLEKAEKDLGHVATWHISRLVKELQGTDFWKLRRAY 131

Query: 137 SPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGE 196
           SPGVQEYVEAAT CKFC+TGTLL L+E+NAGLLPLSDP++EPLQI+  DYLLGLADLTGE
Sbjct: 132 SPGVQEYVEAATLCKFCKTGTLLSLDEINAGLLPLSDPSLEPLQISNLDYLLGLADLTGE 191

Query: 197 LMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIEN 256
           LMRLAIGRISDGELE+AEKICRF RDIYRELTL+VP MD+ SDMK KMDTMLQS++KIEN
Sbjct: 192 LMRLAIGRISDGELEYAEKICRFVRDIYRELTLLVPHMDDTSDMKMKMDTMLQSLMKIEN 251

Query: 257 ACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 286
           AC SVHVRGSEY  LLGS+DP SFL GVPD++
Sbjct: 252 ACFSVHVRGSEYMPLLGSNDPGSFLSGVPDIE 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738200|emb|CBI27401.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/266 (75%), Positives = 229/266 (86%), Gaps = 4/266 (1%)

Query: 25  KTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITIN 84
           K HR  Q++ T LQS  KR RT+ TES +KDAFANY  YLN LNEKRERVVK+SRDITIN
Sbjct: 4   KPHRFPQVADTVLQSPPKRARTMATESSIKDAFANYTDYLNLLNEKRERVVKASRDITIN 63

Query: 85  SKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQE 142
           SKKVIFQVH  S++NK+EVL KA  DL +V +Q++SRLVKELQGTDFWKLRRAYSPGVQE
Sbjct: 64  SKKVIFQVHRISKNNKDEVLDKAVKDLASVTEQHVSRLVKELQGTDFWKLRRAYSPGVQE 123

Query: 143 YVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAI 202
           YVEAAT C FC+ GTLL L+E+NA LLPLSDP+ +PLQIN+ DYLLGLADLTGELMRLAI
Sbjct: 124 YVEAATLCNFCKNGTLLILDEINATLLPLSDPSHQPLQINILDYLLGLADLTGELMRLAI 183

Query: 203 GRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVH 262
           GRISDGELE+AEKIC F RDIYRELTL+ P MD+N+DMKTKMDTMLQSV+KIENAC SVH
Sbjct: 184 GRISDGELEYAEKICGFVRDIYRELTLLAPHMDDNTDMKTKMDTMLQSVMKIENACFSVH 243

Query: 263 VRGSEYTLL-GSSDPSF-LMGVPDMQ 286
           VRGSEY  L GSSDPS+ L+G+PD +
Sbjct: 244 VRGSEYVQLPGSSDPSYLLLGMPDHE 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424991|ref|XP_002266684.1| PREDICTED: translin-associated protein X-like isoform 1 [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/266 (75%), Positives = 229/266 (86%), Gaps = 4/266 (1%)

Query: 25  KTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITIN 84
           K HR  Q++ T LQS  KR RT+ TES +KDAFANY  YLN LNEKRERVVK+SRDITIN
Sbjct: 16  KPHRFPQVADTVLQSPPKRARTMATESSIKDAFANYTDYLNLLNEKRERVVKASRDITIN 75

Query: 85  SKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQE 142
           SKKVIFQVH  S++NK+EVL KA  DL +V +Q++SRLVKELQGTDFWKLRRAYSPGVQE
Sbjct: 76  SKKVIFQVHRISKNNKDEVLDKAVKDLASVTEQHVSRLVKELQGTDFWKLRRAYSPGVQE 135

Query: 143 YVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAI 202
           YVEAAT C FC+ GTLL L+E+NA LLPLSDP+ +PLQIN+ DYLLGLADLTGELMRLAI
Sbjct: 136 YVEAATLCNFCKNGTLLILDEINATLLPLSDPSHQPLQINILDYLLGLADLTGELMRLAI 195

Query: 203 GRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVH 262
           GRISDGELE+AEKIC F RDIYRELTL+ P MD+N+DMKTKMDTMLQSV+KIENAC SVH
Sbjct: 196 GRISDGELEYAEKICGFVRDIYRELTLLAPHMDDNTDMKTKMDTMLQSVMKIENACFSVH 255

Query: 263 VRGSEYTLL-GSSDPSF-LMGVPDMQ 286
           VRGSEY  L GSSDPS+ L+G+PD +
Sbjct: 256 VRGSEYVQLPGSSDPSYLLLGMPDHE 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516891|ref|XP_003628734.1| Translin-associated protein X [Medicago truncatula] gi|355522756|gb|AET03210.1| Translin-associated protein X [Medicago truncatula]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/314 (66%), Positives = 249/314 (79%), Gaps = 35/314 (11%)

Query: 7   LRSWISS-SRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTIT--------TESYMKDAF 57
           LRS+ SS  R  + MAS+ KT RLHQ++GT  Q+ +KRP+T++        T+S MK+ F
Sbjct: 2   LRSFSSSFHRLSLFMASE-KTQRLHQITGTNFQNTSKRPKTMSIATDTATVTDSAMKEPF 60

Query: 58  ANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQ 115
             Y  YLN LN+KRERVVK+SRDIT+NSKKVIFQVH  S+ NK+EVL+KAE DL AV +Q
Sbjct: 61  TKYTEYLNNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQ 120

Query: 116 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPA 175
           ++SRLVKELQGTDFWKLRRAYSPG+QEYVEAATFC FC+ GTLL L+E+N  LLPLSDP+
Sbjct: 121 HVSRLVKELQGTDFWKLRRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPS 180

Query: 176 IEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 235
           ++PLQIN+ DY+LGLADLTGELMRLAIGRISDGELEFAEKIC F+RDIYRELTLVVP MD
Sbjct: 181 LQPLQINILDYILGLADLTGELMRLAIGRISDGELEFAEKICSFARDIYRELTLVVPHMD 240

Query: 236 NNSDMKTKMDTMLQSVLKIEN---------------------ACLSVHVRGSEYT-LLGS 273
           ++SDMKTKM+TMLQSV+KIEN                     AC SVHVRGSEY  LLGS
Sbjct: 241 DSSDMKTKMETMLQSVMKIENEYCLTYILFLHEILIIDVVCVACFSVHVRGSEYIPLLGS 300

Query: 274 SDP-SFLMGVPDMQ 286
           +DP SFL+GVPD++
Sbjct: 301 NDPSSFLVGVPDIE 314

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108631|ref|XP_002314915.1| predicted protein [Populus trichocarpa] gi|222863955|gb|EEF01086.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/290 (71%), Positives = 240/290 (82%), Gaps = 23/290 (7%)

Query: 20  MASKSKTHRLHQLSGTALQSIAKRPRTITTESY-------MKDAFANYAGYLNELNEKRE 72
           +A+K K H LHQ +   LQS AKR RT+++ S         KDAF NYA YLN+LNEKRE
Sbjct: 17  VANKPKPHLLHQGTAAGLQSSAKRARTMSSTSESSSSSSSFKDAFGNYANYLNKLNEKRE 76

Query: 73  RVVKSSRDITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFW 130
           RVVK+SRDIT+NSKKVIFQVH  S+DN++EVL KAE DL AV +QYI +LVKELQGTDFW
Sbjct: 77  RVVKASRDITMNSKKVIFQVHRISKDNRDEVLDKAEKDLAAVTEQYILKLVKELQGTDFW 136

Query: 131 KLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGL 190
           KLRRAYSPGVQEYVEAATFCKFCRTGTLL+L+E+NA LLPLS+P++EPLQINV DYLLGL
Sbjct: 137 KLRRAYSPGVQEYVEAATFCKFCRTGTLLNLDEINATLLPLSEPSVEPLQINVLDYLLGL 196

Query: 191 ADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQS 250
           ADLTGELMRLAIGRISDGELE+A+KIC+F  DIYRELTL+VP MD++SDMKTKMDTMLQS
Sbjct: 197 ADLTGELMRLAIGRISDGELEYAKKICQFVHDIYRELTLIVPYMDDSSDMKTKMDTMLQS 256

Query: 251 VLKIEN------------ACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 286
           V+KIEN            AC  VHVRGSEYT LLG+S+P SFL+GV D++
Sbjct: 257 VVKIENGFTASFNRVIVAACYGVHVRGSEYTPLLGASEPSSFLLGVSDVE 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807852|ref|NP_001242186.1| uncharacterized protein LOC100776523 [Glycine max] gi|255644471|gb|ACU22739.1| unknown [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/285 (69%), Positives = 238/285 (83%), Gaps = 15/285 (5%)

Query: 11  ISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITT-----ESYMKDAFANYAGYLN 65
           + S R  + MASK      H+++GT +QS  KR RT+ T     E  +K+AF+ +   LN
Sbjct: 2   LHSLRFSLFMASK------HRIAGTNIQSSPKRARTMATSSTAIEPALKEAFSRHTQCLN 55

Query: 66  ELNEKRERVVKSSRDITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKE 123
           +LN+KRERVVK+SRD+T+NSKKVIFQVH  S+ NK E+L+KAE DL AV DQY+SRLVKE
Sbjct: 56  DLNDKRERVVKASRDVTMNSKKVIFQVHRMSKYNKVEILEKAEKDLAAVTDQYMSRLVKE 115

Query: 124 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINV 183
           LQGTDFWKLRRAYSPG+QEYVEAATF  FC++GTLL L+E+N  LLPLSDP+++PLQIN+
Sbjct: 116 LQGTDFWKLRRAYSPGIQEYVEAATFYGFCKSGTLLKLDEINKTLLPLSDPSLDPLQINI 175

Query: 184 FDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTK 243
            DY+LG+ADLTGELMRLAIGRISDGELEFAEKICRF+RDIYRELTLVVP MD++SDMKTK
Sbjct: 176 LDYILGVADLTGELMRLAIGRISDGELEFAEKICRFARDIYRELTLVVPHMDDSSDMKTK 235

Query: 244 MDTMLQSVLKIENACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 286
           MD MLQSV+KIENAC  VHVRGSEY  LLGS+DP SFL+GVPD++
Sbjct: 236 MDVMLQSVMKIENACFGVHVRGSEYIPLLGSNDPSSFLVGVPDIE 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818030|ref|XP_002876898.1| translin family protein [Arabidopsis lyrata subsp. lyrata] gi|297322736|gb|EFH53157.1| translin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/268 (69%), Positives = 229/268 (85%), Gaps = 4/268 (1%)

Query: 18  IIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKS 77
           ++MA K K  RLHQ++ T ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK+
Sbjct: 15  MLMAPKLKPQRLHQIAETGVEQLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKA 74

Query: 78  SRDITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRA 135
           SRDIT+NSKKVIFQVH  S+DNKEEVL+KA  DLEAV+DQ+ ++L++ELQGTDFWKLRRA
Sbjct: 75  SRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFAQLMRELQGTDFWKLRRA 134

Query: 136 YSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTG 195
           YSPGVQEYVEAATF KFC +GTL  L+E+N  L+PLSDP++EPLQIN+ DY+LGLADLTG
Sbjct: 135 YSPGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGLADLTG 194

Query: 196 ELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIE 255
           ELMR+AIGRISDGE+EFA++IC+F R I+REL LVVP MD++ DMK+KM+ MLQSV+KIE
Sbjct: 195 ELMRMAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIE 254

Query: 256 NACLSVHVRGSEYT-LLGSSDP-SFLMG 281
           NAC SVHVRGSEY  LLG   P S+L+G
Sbjct: 255 NACFSVHVRGSEYIPLLGDDAPTSYLLG 282

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678076|ref|NP_178473.2| translin-like protein [Arabidopsis thaliana] gi|26449445|dbj|BAC41849.1| unknown protein [Arabidopsis thaliana] gi|87116652|gb|ABD19690.1| At2g03780 [Arabidopsis thaliana] gi|330250654|gb|AEC05748.1| translin-like protein [Arabidopsis thaliana]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/273 (68%), Positives = 231/273 (84%), Gaps = 4/273 (1%)

Query: 18  IIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKS 77
           ++MA K K  RLHQ++ + ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK 
Sbjct: 15  MLMAPKLKPQRLHQIAESGVEHLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKV 74

Query: 78  SRDITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRA 135
           SRDIT+NSKKVIFQVH  S+DNKEEVL+KA  DLEAV+DQ+ +RL+KELQGTDFWKLRRA
Sbjct: 75  SRDITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRA 134

Query: 136 YSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTG 195
           YSPGVQEYVEAATF KFC +GTL  L+E+N  L+PLSDP++EPLQIN+ DY+LGLADLTG
Sbjct: 135 YSPGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGLADLTG 194

Query: 196 ELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIE 255
           ELMR+AIGRISDGE+EFA++IC+F R I+REL LVVP MD++ DMK+KM+ MLQSV+KIE
Sbjct: 195 ELMRMAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIE 254

Query: 256 NACLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 286
           NAC SVHVRG EY  LLG + P S+L+G  D++
Sbjct: 255 NACFSVHVRGLEYIPLLGDNAPTSYLLGAADVE 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541928|ref|XP_002512028.1| translin associated factor X, putative [Ricinus communis] gi|223549208|gb|EEF50697.1| translin associated factor X, putative [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/253 (76%), Positives = 219/253 (86%), Gaps = 11/253 (4%)

Query: 10  WISSSRSPIIMASKSKTHRLHQ---LSGTALQSIAKRPRTITTESYMKDAFANYAGYLNE 66
           WI      ++MASKSK HR H     +GTALQS  KR RT++TES  KDAF+ YA YLN 
Sbjct: 10  WI------VLMASKSKPHRPHHQEVAAGTALQSSTKRARTMSTESSFKDAFSKYADYLNN 63

Query: 67  LNEKRERVVKSSRDITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKEL 124
           LNEKRERVVK+SRD+T+NSKKVIFQVH  S+ NKEEVL+KAE DL AV DQ++SRLVKEL
Sbjct: 64  LNEKRERVVKASRDVTMNSKKVIFQVHRLSKYNKEEVLEKAEKDLAAVTDQHMSRLVKEL 123

Query: 125 QGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVF 184
           QGTDFWKLRRAYSPGVQEYVEAATF KFCRTGTLL+L+E+NA LLPLSDP++EPLQ+NV 
Sbjct: 124 QGTDFWKLRRAYSPGVQEYVEAATFFKFCRTGTLLNLDEINATLLPLSDPSLEPLQLNVL 183

Query: 185 DYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKM 244
           DYLLGLADLTGELMRLAIGRISDGE EFAE+IC+F R+IYRELTL+VP MD++SDMKTKM
Sbjct: 184 DYLLGLADLTGELMRLAIGRISDGEPEFAERICKFVREIYRELTLIVPHMDDSSDMKTKM 243

Query: 245 DTMLQSVLKIENA 257
           DTMLQSVLKIEN 
Sbjct: 244 DTMLQSVLKIENG 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2044264	287	AT2G03780 "AT2G03780" [Arabido	0.930	0.930	0.667	1e-91
DICTYBASE|DDB_G0284837	284	tsnax "translin-associated pro	0.759	0.767	0.336	4.2e-31
UNIPROTKB|J9P139	290	TSNAX "Uncharacterized protein	0.383	0.379	0.385	4.9e-31
RGD|621574	290	Tsnax "translin-associated fac	0.344	0.341	0.407	6.2e-31
MGI|MGI:1855672	290	Tsnax "translin-associated fac	0.344	0.341	0.417	7.9e-31
UNIPROTKB|F1RGU1	290	TSNAX "Uncharacterized protein	0.383	0.379	0.385	2.4e-30
UNIPROTKB|Q99598	290	TSNAX "Translin-associated pro	0.383	0.379	0.377	1.4e-29
ZFIN|ZDB-GENE-050913-80	281	tsnax "translin-associated fac	0.745	0.761	0.353	5.6e-29
UNIPROTKB|G3MY03	290	TSNAX "Uncharacterized protein	0.383	0.379	0.377	2e-28
FB|FBgn0038327	298	Trax "Translin associated fact	0.414	0.399	0.367	9.5e-27

TAIR|locus:2044264 AT2G03780 "AT2G03780" [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 181/271 (66%), Positives = 219/271 (80%)

Query:    20 MASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSR 79
             MA K K  RLHQ++ + ++ + K+ RT++TES MKDAF+ YA YLN  NEKRERVVK SR
Sbjct:    17 MAPKLKPQRLHQIAESGVEHLVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKVSR 76

Query:    80 DITINSKKVIFQVH--SRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYS 137
             DIT+NSKKVIFQVH  S+DNKEEVL+KA  DLEAV+DQ+ +RL+KELQGTDFWKLRRAYS
Sbjct:    77 DITMNSKKVIFQVHRLSKDNKEEVLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRAYS 136

Query:   138 PGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGEL 197
             PGVQEYVEAATF KFC +GT              SDP++EPLQIN+ DY+LGLADLTGEL
Sbjct:   137 PGVQEYVEAATFYKFCLSGTLCTLDEINTTLVPLSDPSLEPLQINILDYILGLADLTGEL 196

Query:   198 MRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 257
             MR+AIGRISDGE+EFA++IC+F R I+REL LVVP MD++ DMK+KM+ MLQSV+KIENA
Sbjct:   197 MRMAIGRISDGEIEFAQRICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIENA 256

Query:   258 CLSVHVRGSEYT-LLGSSDP-SFLMGVPDMQ 286
             C SVHVRG EY  LLG + P S+L+G  D++
Sbjct:   257 CFSVHVRGLEYIPLLGDNAPTSYLLGAADVE 287

GO:0003677 "DNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0284837 tsnax "translin-associated protein X" [Dictyostelium discoideum (taxid:44689)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 76/226 (33%), Positives = 134/226 (59%)

Query:    46 TITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSR--DNKEEVLK 103
             +I  E  +K  F++++  L+E N++RER+VK+SRDITI SK+VI  +     ++K+E+LK
Sbjct:    50 SIFNEPKIKSMFSSFSKKLDEDNDRRERIVKNSRDITIASKRVISLLQRAVWEDKQEILK 109

Query:   104 KAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXX 163
             +++ +L+ + + +   ++KEL   ++WK ++A++ GVQEY+EA +F  +   G       
Sbjct:   110 QSKQNLQPIFNLF-GNIIKELDQQEYWKFQKAFTNGVQEYIEAVSFQYYIEFGALIPLDS 168

Query:   164 XXXXXXXXSD-PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 222
                      +  ++    I++ DY LG+ DL+GELMR + G ++ G+ +   KIC    D
Sbjct:   169 ILIPIKEALNLDSLGQFNISIDDYALGICDLSGELMRYSTGCVTVGKYDECFKIC----D 224

Query:   223 IYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEY 268
               R ++        N D+ +KM+TM +S+ KIE  C S+ +R SE+
Sbjct:   225 FIRSMSSGFKKCHLNKDITSKMNTMEESLKKIEKLCFSIRIRKSEF 270

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|J9P139 TSNAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
 Identities = 44/114 (38%), Positives = 71/114 (62%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEV 101
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + EE+
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   102 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 155
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0043565 "sequence-specific DNA binding" evidence=IEA

RGD|621574 Tsnax "translin-associated factor X" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 6.2e-31, Sum P(2) = 6.2e-31
 Identities = 42/103 (40%), Positives = 67/103 (65%)

Query:    56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
             AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + EE+L ++E+ L+ V
Sbjct:    38 AFKSFQQELDTRHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query:   113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 155
             + + + ++ +EL G D  +  RA + G+QEYVEA +F  F RT
Sbjct:    98 RQKML-QVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRT 139

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IDA

MGI|MGI:1855672 Tsnax "translin-associated factor X" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 7.9e-31, Sum P(2) = 7.9e-31
 Identities = 43/103 (41%), Positives = 67/103 (65%)

Query:    56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
             AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + EE+L ++E+ L+ V
Sbjct:    38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97

Query:   113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 155
             + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    98 R-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKT 139

GO:0003677 "DNA binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RGU1 TSNAX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
 Identities = 44/114 (38%), Positives = 71/114 (62%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEV 101
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + EE+
Sbjct:    27 KDLNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   102 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 155
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q99598 TSNAX "Translin-associated protein X" [Homo sapiens (taxid:9606)]

 Score = 188 (71.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 43/114 (37%), Positives = 71/114 (62%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEV 101
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + E++
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDI 86

Query:   102 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 155
             L ++E  L+ V+ Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEIKLDGVR-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031687 "A2A adenosine receptor binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

ZFIN|ZDB-GENE-050913-80 tsnax "translin-associated factor X" [Danio rerio (taxid:7955)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 82/232 (35%), Positives = 127/232 (54%)

Query:    51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEA 107
             S +  AF  +   L+   +K ER+VK SRD+TI SK+ IF +H   S  + EE+L +AE 
Sbjct:    29 SVVISAFKVFQQELDTRYDKYERLVKISRDVTIESKRTIFLLHRVASVPDVEEILNEAEV 88

Query:   108 DLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXX 167
              L+ V+ Q I ++ +EL+G D  +  RA++PG+QEYVEA +F  F R  +          
Sbjct:    89 KLDGVR-QKIGQIAEELRGEDLHQFHRAFTPGIQEYVEAVSFHHFIRHRSLISLEEINAR 147

Query:   168 XXXXSD------------PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
                  D            P +   QI   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct:   148 LVFIRDNNKAVGEGTFSSPCVLTFQITPTDYLLGVADLTGELMRMCISSVGNGDMDTPFQ 207

Query:   216 ICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE 267
             +  F R I+   +L+        ++  K+  + QS+ K+E+AC ++ VRGSE
Sbjct:   208 LSGFLRQIHDGFSLIGNT--GPYEVSKKLHALRQSLGKVEDACYTLRVRGSE 257

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G3MY03 TSNAX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 43/114 (37%), Positives = 70/114 (61%)

Query:    45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEV 101
             + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + EE+
Sbjct:    27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEI 86

Query:   102 LKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRT 155
             L ++E  L+ V+ Q I ++ +EL   D  +  RA + G+QEYVEA +F  F +T
Sbjct:    87 LTESEVKLDGVR-QKILQVAQELSVEDMHQFHRAITTGLQEYVEAVSFQHFIKT 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

FB|FBgn0038327 Trax "Translin associated factor X" [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 9.5e-27, Sum P(2) = 9.5e-27
 Identities = 47/128 (36%), Positives = 74/128 (57%)

Query:    34 GTALQSIAKRPRTITTESYMKDA--FANYAGYLNEL---NEKRERVVKSSRDITINSKKV 88
             G   ++ A R R I      +D+     +  Y NEL   +++ ER+VK SRDITI SK++
Sbjct:     6 GAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRI 65

Query:    89 IFQVHSRD----NKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYV 144
             IF +HS D    NKE+VL++A   L  +       +  EL+  D ++ R +YSPG+QE++
Sbjct:    66 IFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFI 125

Query:   145 EAATFCKF 152
             EA T+ ++
Sbjct:   126 EAYTYMEY 133

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam01997	187	pfam01997, Translin, Translin family	6e-62
COG2178	204	COG2178, COG2178, Predicted RNA-binding protein of	3e-22
PRK14562	204	PRK14562, PRK14562, haloacid dehalogenase superfam	7e-18

>gnl|CDD|202084 pfam01997, Translin, Translin family

 Score =  193 bits (493), Expect = 6e-62
 Identities = 74/201 (36%), Positives = 107/201 (53%), Gaps = 16/201 (7%)

Query: 68  NEKRERVVKSSRDITINSKKVIFQVHSRD--NKEEVLKKAEADLEAVKDQYISRLVKELQ 125
           ++ RE ++K SRDIT  SKK IF +H  D    EE+LK+A+  L  +K        + L+
Sbjct: 1   HDAREELIKISRDITRLSKKAIFALHRGDAEEAEELLKEAKELLAKLK--------ELLK 52

Query: 126 GTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFD 185
           G  +++   A+S  +QEYVEA TF  +  TGTL  LEEL   L    +       +   D
Sbjct: 53  GHPYYRYSGAWSNALQEYVEALTFYHYLETGTLPSLEELGEILGVPVNDGF---HVTPED 109

Query: 186 YLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMD 245
           YLLGL DLTGELMR A+  ++ G+ E   +I  F  D+Y    L+      N  ++ K+D
Sbjct: 110 YLLGLFDLTGELMRYALNSVTLGDYERPLEILEFMEDLYAGFRLLNLK---NDGLRKKLD 166

Query: 246 TMLQSVLKIENACLSVHVRGS 266
            +  S+ K+E     + VRG 
Sbjct: 167 VLRYSLEKVEEVVYDLSVRGL 187

Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes human translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen. Length = 187

>gnl|CDD|225089 COG2178, COG2178, Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAV 112
           +++   +    L E ++ RE  +K SR+I   S + IF +H  D  EE  KK +   EAV
Sbjct: 1   LREEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGD-FEEAEKKLKKASEAV 59

Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 172
           +     +L + L G          +  +QEYVEA       + G L              
Sbjct: 60  E-----KLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-------------- 100

Query: 173 DPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYREL 227
            P+ E L +    Y+LGLAD  GEL R  +  +  G  E AE+  +F   +Y EL
Sbjct: 101 -PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEEL 154

Length = 204

>gnl|CDD|184746 PRK14562, PRK14562, haloacid dehalogenase superfamily protein; Provisional

 Score = 79.6 bits (197), Expect = 7e-18
 Identities = 50/170 (29%), Positives = 69/170 (40%), Gaps = 31/170 (18%)

Query: 63  YLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVK 122
            L E +E RE  +K SR+I   S   I  +H  D      ++AE  L+         LVK
Sbjct: 12  ELEEKDEAREEALKLSREIVRLSGDAIRAIHRGD-----FEEAEKLLKE-----AEELVK 61

Query: 123 ELQGT-----DFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIE 177
           EL+       + +      +  +QEYVEA           +   EEL             
Sbjct: 62  ELKELLKDHPELYYAGYVGTA-LQEYVEALLVYSLLFENKIPSPEELG------------ 108

Query: 178 PLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYREL 227
              +    YLLGLAD  GEL R  +  +  GE+E AEK+     +IY  L
Sbjct: 109 ---VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFL 155

Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
KOG3066	271	consensus Translin-associated protein X [General f	100.0
PF01997	200	Translin: Translin family; InterPro: IPR002848 Tra	100.0
PRK14562	204	haloacid dehalogenase superfamily protein; Provisi	100.0
KOG3067	226	consensus Translin family protein [General functio	100.0
COG2178	204	Predicted RNA-binding protein of the translin fami	100.0

>KOG3066 consensus Translin-associated protein X [General function prediction only]

Probab=100.00  E-value=1.3e-61  Score=426.75  Aligned_cols=242  Identities=40%  Similarity=0.567  Sum_probs=224.7

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHHHH
Q 023134           43 RPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHS---RDNKEEVLKKAEADLEAVKDQYISR  119 (287)
Q Consensus        43 ~~~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~---~~~~~~~l~~A~~~L~~v~~~~~~~  119 (287)
                      .+++|++++++.+.|.+|+++|++.||+||||+|+|||||.+||++||.+|+   ..++++++.++...|+.++.+++..
T Consensus        25 kartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~f~~  104 (271)
T KOG3066|consen   25 KARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKEFES  104 (271)
T ss_pred             cccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999994   3567789999999999999999999


Q ss_pred             HHHHhcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHH
Q 023134          120 LVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMR  199 (287)
Q Consensus       120 La~~L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR  199 (287)
                      ++.+|+|.++|+|++++++|+||||||++|++|+.+|+|.+.+||+..+.++..+  .++.|++.||++|+|||||||||
T Consensus       105 l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~--~rl~in~iDYvLGvaDlTGElMR  182 (271)
T KOG3066|consen  105 LKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSS--FRLSINFIDYVLGVADLTGELMR  182 (271)
T ss_pred             HHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCc--cceeeeHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999998877665  57999999999999999999999


Q ss_pred             HHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccccccCC-CCCc-c
Q 023134          200 LAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLG-SSDP-S  277 (287)
Q Consensus       200 ~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e~~~~~-~~~~-~  277 (287)
                      +|||++++|+++.+.++++|+++||.+|+.+.+......++.+|+.||++||-|||++||.++|||+|+|.++ .++| .
T Consensus       183 m~I~~~s~g~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~KvEnaCys~~vRg~e~~~l~l~~~~~~  262 (271)
T KOG3066|consen  183 MLITNGSKGSIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISKVENACYSKIVRGAEKRYLNLEVDTAT  262 (271)
T ss_pred             HHHhcCcCcchhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHHHHhHHHHHHhcccccccccccccccC
Confidence            9999999999999999999999999999998654433679999999999999999999999999999988655 7777 7


Q ss_pred             cccCCCCCC
Q 023134          278 FLMGVPDMQ  286 (287)
Q Consensus       278 ~~~~~~~~~  286 (287)
                      .+.++.|+|
T Consensus       263 ~~~e~~d~e  271 (271)
T KOG3066|consen  263 PPEEKRDRE  271 (271)
T ss_pred             CchhhhhcC
Confidence            778887765

>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments

Probab=100.00  E-value=6.2e-58  Score=406.55  Aligned_cols=196  Identities=42%  Similarity=0.661  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhcchhHHHHHH
Q 023134           68 NEKRERVVKSSRDITINSKKVIFQVHSRDN--KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVE  145 (287)
Q Consensus        68 ~d~REriik~SRdIt~~SKk~If~lH~~~~--~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~~ry~~~~s~~lQEyVE  145 (287)
                      ||+||+|+|+|||||++||++||++|+.+.  ..+++++|++.++++.+ .+..++ ++++.++|+|++.|++|+|||||
T Consensus         1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE~vE   78 (200)
T PF01997_consen    1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQEYVE   78 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999997665  45789999999999886 789999 99999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHH
Q 023134          146 AATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYR  225 (287)
Q Consensus       146 A~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~  225 (287)
                      |++|++||++|+|+|++|+++.|.... .....|+|+++|||+||+||||||||+|||+++.||++.|.++++||++||.
T Consensus        79 a~~f~~~l~~~~L~t~~ev~~~l~~~~-~~~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~gd~~~~~~i~~f~~~l~~  157 (200)
T PF01997_consen   79 AISFYHYLETGRLLTPEEVGEILGFSE-DDEDRFHVTPEDYLLGLADLTGELMRYAINSVTKGDYERPEKILEFMRELYS  157 (200)
T ss_dssp             HHHHHHHHHHSSS--HHHHHHHCTCBS-STSCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHhhcc-ccccceecCHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Confidence            999999999999999999999875433 3366799999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCC--CCCcchhhHHHHHHHHHHHHhhhhhheeecc
Q 023134          226 ELTLVVPLMD--NNSDMKTKMDTMLQSVLKIENACLSVHVRGS  266 (287)
Q Consensus       226 ~f~~L~~~lk--~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~  266 (287)
                      +|..|+++..  .|++||||+|++||+|+|+|++||+++||||
T Consensus       158 ~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs  200 (200)
T PF01997_consen  158 GFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS  200 (200)
T ss_dssp             HHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence            9999965321  2899999999999999999999999999997

They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.

>PRK14562 haloacid dehalogenase superfamily protein; Provisional

Probab=100.00  E-value=6.1e-53  Score=375.87  Aligned_cols=194  Identities=26%  Similarity=0.300  Sum_probs=178.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh
Q 023134           53 MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKL  132 (287)
Q Consensus        53 ~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~~~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~~ry  132 (287)
                      +.++|++++++||++|++||+|+|+|||||+.||++||++|+.+     +++|++.++++.+ .+.+|++.+++.++|+|
T Consensus         2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~-----~~~a~~~l~~a~~-~~~~l~~~~~~~~~~~y   75 (204)
T PRK14562          2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGD-----FEEAEKLLKEAEE-LVKELKELLKDHPELYY   75 (204)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHH-HHHHHHHHhccCchhhh
Confidence            46789999999999999999999999999999999999999876     7888888988887 68899999999999999


Q ss_pred             hhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHH
Q 023134          133 RRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEF  212 (287)
Q Consensus       133 ~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~  212 (287)
                      ++.|++|+||||||++|++|+++|+|||++|               ++|+++|||+||||+||||||||+|+++.||++.
T Consensus        76 ~~~~~~~lQEyvEA~~f~~~l~~~~l~s~ee---------------l~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~  140 (204)
T PRK14562         76 AGYVGTALQEYVEALLVYSLLFENKIPSPEE---------------LGVPEAAYLLGLADAIGELRRHILELLRKGEIEE  140 (204)
T ss_pred             hhhcchHHHHHHHHHHHHHHHcCCCCCCHHH---------------cCCCHHHHHhHHHHHHhHHHHHHHHHHhcCChHH
Confidence            9999999999999999999999999999998               5799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHH-Hhhhhhheeeccc
Q 023134          213 AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKI-ENACLSVHVRGSE  267 (287)
Q Consensus       213 ~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKi-E~v~Ydl~vRg~e  267 (287)
                      |+++++||++||.+|+.|+++.+.+++||||+|++||+|+|+ ++++|....++++
T Consensus       141 ~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~  196 (204)
T PRK14562        141 AEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLLERTRGDLTNAILNRKLE  196 (204)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999554323459999999999999999 6678877776654

>KOG3067 consensus Translin family protein [General function prediction only]

Probab=100.00  E-value=2.3e-46  Score=323.71  Aligned_cols=209  Identities=21%  Similarity=0.356  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023134           54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKV---IFQVHSRD-NKEEVLKKAEADLEAVKDQYISRLVKELQGTDF  129 (287)
Q Consensus        54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~---If~lH~~~-~~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~  129 (287)
                      +++|.++++.+|+.++.||+|.+.+++|...+|.+   +..+|+.. ..++.|..|++.+..+.. ++..|++..+..+|
T Consensus         5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy   83 (226)
T KOG3067|consen    5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY   83 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence            58999999999999999999999999999999987   45677544 467899999999999876 78999999999999


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCc
Q 023134          130 WKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGE  209 (287)
Q Consensus       130 ~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd  209 (287)
                      |||++.|...+|..|....|.+||++|.|+|++++.+.| +++....++||++.+|||.|++-|++||.|+++|+|+.||
T Consensus        84 yry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~eil-gl~p~~s~~FhLdvedyl~gvl~L~seLsR~svNsVtaGd  162 (226)
T KOG3067|consen   84 YRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTEIL-GLEPDRSEGFHLDVEDYLSGVLFLASELSRQSVNSVTAGD  162 (226)
T ss_pred             EEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHh-cCCccccccceeeHHHHHHHHHHHHHHHHHhhhccccccC
Confidence            999999999999999999999999999999999998866 6666666789999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccc
Q 023134          210 LEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE  267 (287)
Q Consensus       210 ~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e  267 (287)
                      |++|..+++|+.+++++|++|  |+| ||+||||||+|||+|||+|+|+||++|||+-
T Consensus       163 Y~~Pl~v~~fi~dlhs~FrlL--nLK-ndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~  217 (226)
T KOG3067|consen  163 YHRPLHVSNFINDLHSGFRLL--NLK-NDSLRKRFDGLKYDLKRVEEVVYDVSIRGLV  217 (226)
T ss_pred             cCCchHHHHHHhhhcccceee--ecc-chhhhccccchhhhHHhhhhhheeeeeeccc
Confidence            999999999999999999999  888 9999999999999999999999999999986

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.2e-40  Score=289.45  Aligned_cols=186  Identities=27%  Similarity=0.383  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh
Q 023134           54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLR  133 (287)
Q Consensus        54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~~~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~~ry~  133 (287)
                      .+.+.++++.|+++++.||+++++||+|+++|+.+|+++|+++     +++|+..++++.+ .+..|...+.+.+-..|.
T Consensus         2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~-----~eeA~~~l~~a~~-~v~~Lk~~l~~~pel~~a   75 (204)
T COG2178           2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGD-----FEEAEKKLKKASE-AVEKLKRLLAGFPELYFA   75 (204)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHH
Confidence            4579999999999999999999999999999999999999888     8999999998877 678888888876666666


Q ss_pred             hhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHH
Q 023134          134 RAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFA  213 (287)
Q Consensus       134 ~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~  213 (287)
                      +..+.|+||||||.+|+.|++++.+++++|               ++|++.+||+|+||++|||||++++.+..|+++.|
T Consensus        76 g~~~~a~QEyvEA~~l~~~l~~~~~ps~~E---------------L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~A  140 (204)
T COG2178          76 GFVTTALQEYVEATLLYSILKDGRLPSPEE---------------LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEA  140 (204)
T ss_pred             HhhcchHHHHHHHHHHHHHHhcCCCCCHHH---------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            778999999999999999999999999988               57999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhh
Q 023134          214 EKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLS  260 (287)
Q Consensus       214 ~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Yd  260 (287)
                      ++.++||++||..++.+.++-+..++||||+|++|+.++|+..-+..
T Consensus       141 e~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~dl~~  187 (204)
T COG2178         141 ERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSDLFR  187 (204)
T ss_pred             HHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999666555679999999999999999864443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
3pja_J	290	Crystal Structure Of Human C3po Complex Length = 29		5e-29
3axj_B	298	High Resolution Crystal Structure Of C3po Length =		4e-23
3riu_C	269	Crystal Structure Of Drosophila Hexameric C3po Form		9e-23
3axj_A	249	High Resolution Crystal Structure Of C3po Length =		9e-06
4dg7_A	255	Low Resolution Structure Of Drosophila Translin Len		1e-05
2qva_A	247	Crystal Structure Of Drosophila Melanogaster Transl		1e-05
2qrx_A	235	Crystal Structure Of Drosophila Melanogaster Transl		1e-05
3riu_A	218	Crystal Structure Of Drosophila Hexameric C3po Form		1e-05

>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex Length = 290

Iteration: 1
 Score =  124 bits (312), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 131/235 (55%), Gaps = 29/235 (12%)
Query: 56  AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
           AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  + E++L ++E  L+ V
Sbjct: 38  AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTXXXXXXXXXXXXXXS 172
           + Q I ++ +EL G D  +  RA + G+QEYVEA +F  F +T +              +
Sbjct: 98  R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156
Query: 173 D--------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
           +        P+ +          L++   DYLLG+ADLTGELMR+ I  + +G+++   +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
           + +F R +Y   + +      N+   ++  K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266

>pdb|3AXJ|B Chain B, High Resolution Crystal Structure Of C3po Length = 298

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 42/281 (14%)
Query: 34  GTALQSIAKRPRTITTESYMKDA--FANYAGYLNEL---NEKRERVVKSSRDITINSKKV 88
           G   ++ A R R I      +D+     +  Y NEL   +++ ER+VK SRDITI SK++
Sbjct: 6   GAGHRNTAPRKRQIPAAQLDEDSPIVQQFRIYSNELIXKHDRHERIVKLSRDITIESKRI 65
Query: 89  IFQVHSRD----NKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYV 144
           IF +HS D    NKE+VL++A   L  +       +  EL+  D ++ R +YSPG+QE++
Sbjct: 66  IFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFI 125
Query: 145 EAATFCKF-CR-----------TGTXXXXXXXXXXXXXXSDPAIEPLQ------------ 180
           +A T+ ++ C                             S P  EP +            
Sbjct: 126 QAYTYXEYLCHEDAEGENETKSVSDWQAIQAVXQYVEESSQPKEEPTEGEDVQAIAQVES 185
Query: 181 -------INVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPL 233
                  ++  +Y+LGL+DLTGEL R  I  +  G+ +     C+  +  Y     +   
Sbjct: 186 PKKFQFFVDPTEYILGLSDLTGELXRRCINSLGSGDTDTCLDTCKALQHFYS--GYISLN 243
Query: 234 MDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSS 274
                ++  K+ T  QSVLK EN C +V VRG E    G++
Sbjct: 244 CQRARELWRKITTXKQSVLKAENVCYNVKVRGGEAAKWGAT 284

>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 269

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 118/250 (47%), Gaps = 40/250 (16%)
Query: 63  YLNEL---NEKRERVVKSSRDITINSKKVIFQVHSRD----NKEEVLKKAEADLEAVKDQ 115
           Y NEL   +++ ER+VK SRDITI SK++IF +HS D    NKE+VL++A   L  +   
Sbjct: 8   YSNELIXKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAV 67
Query: 116 YISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKF-CR-----------TGTXXXXXX 163
               +  EL+  D ++ R +YSPG+QE++EA T+ ++ C                     
Sbjct: 68  NFRAVALELRDQDVYQFRSSYSPGLQEFIEAYTYXEYLCHEDAEGENETKSVSDWQAIQA 127
Query: 164 XXXXXXXXSDPAIEPLQ-------------------INVFDYLLGLADLTGELMRLAIGR 204
                   S P  EP +                   ++  +Y+LGL+DLTGEL R  I  
Sbjct: 128 VXQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEYILGLSDLTGELXRRCINS 187
Query: 205 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVR 264
           +  G+ +     C+  +  Y     +        ++  K+ T  QSVLK EN C +V VR
Sbjct: 188 LGSGDTDTCLDTCKALQHFYS--GYISLNCQRARELWRKITTXKQSVLKAENVCYNVKVR 245
Query: 265 GSEYTLLGSS 274
           G E    G++
Sbjct: 246 GGEAAKWGAT 255

>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po Length = 249

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 31/226 (13%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQ---VHSRDNKEEV---LKKAEAD 108
           D F+NY  Y++   E RE +    R+I   SK+   +   +HS  ++      L + + +
Sbjct: 22  DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 81
Query: 109 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 162
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 82  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 135
Query: 163 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 222
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E    I  F  D
Sbjct: 136 EXLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGD 191
Query: 223 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 265
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 192 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 231

>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin Length = 255

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 96/238 (40%), Gaps = 32/238 (13%)
Query: 44  PRTITTESYMK-DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQ---VHSRDNKE 99
           PR     +++  D F+NY  Y++   E RE +    R+I   SK+   +   +HS  ++ 
Sbjct: 16  PRGSHMSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQI 75
Query: 100 EV---LKKAEADLEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFC 150
                L + + +L A K Q ++ LV   Q    +D W     R  +   +  Y+EA    
Sbjct: 76  SAACGLARKQVELCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV 135
Query: 151 KFCRTGTXXXXXXXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGEL 210
                 T              S    E   ++V DYLLG+  L  EL R A   ++ G+ 
Sbjct: 136 ------TRETVAEMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDY 185
Query: 211 EFAEKICRFSRDI---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 265
           E    I  F  D+   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 186 ERPLNISHFIGDLNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 237

>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 247

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 31/226 (13%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQ---VHSRDNKEEV---LKKAEAD 108
           D F+NY  Y++   E RE +    R+I   SK+   +   +HS  ++      L + + +
Sbjct: 20  DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 79
Query: 109 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 162
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 80  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 133
Query: 163 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 222
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E +  I  F  D
Sbjct: 134 EMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGD 189
Query: 223 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 265
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 190 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 229

>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin Protein Length = 235

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 31/226 (13%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQ---VHSRDNKEEV---LKKAEAD 108
           D F+NY  Y++   E RE +    R+I   SK+   +   +HS  ++      L + + +
Sbjct: 8   DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 67
Query: 109 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 162
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 68  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 121
Query: 163 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 222
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E +  I  F  D
Sbjct: 122 EMLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERSLNISHFIGD 177
Query: 223 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 265
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 178 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 217

>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By Truncated Translin And Trax Length = 218

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 31/226 (13%)
Query: 55  DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQ---VHSRDNKEEV---LKKAEAD 108
           D F+NY  Y++   E RE +    R+I   SK+   +   +HS  ++      L + + +
Sbjct: 9   DIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVE 68
Query: 109 LEAVKDQYISRLVKELQG---TDFWKL---RRAYSPGVQEYVEAATFCKFCRTGTXXXXX 162
           L A K Q ++ LV   Q    +D W     R  +   +  Y+EA          T     
Sbjct: 69  LCAQKYQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLV------TRETVA 122
Query: 163 XXXXXXXXXSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 222
                    S    E   ++V DYLLG+  L  EL R A   ++ G+ E    I  F  D
Sbjct: 123 EXLGLKISQS----EGFHLDVEDYLLGILQLASELSRFATNSVTXGDYERPLNISHFIGD 178
Query: 223 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 265
           +   +R L L       N  ++ + D +   V KIE     V +RG
Sbjct: 179 LNTGFRLLNL------KNDGLRKRFDALKYDVKKIEEVVYDVSIRG 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
3qb5_K	290	Translin-associated protein X; alpha helical bundl	1e-62
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	1e-59
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	2e-58
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	3e-58

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J Length = 290

 Score =  198 bits (505), Expect = 1e-62
 Identities = 83/257 (32%), Positives = 144/257 (56%), Gaps = 23/257 (8%)

Query: 41  AKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDN 97
            +  + + + S +  AF ++   L+  ++K ER+VK SRDIT+ SK+ IF +H   S  +
Sbjct: 23  RREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPD 82

Query: 98  KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 157
            E++L ++E  L+ V+ +   ++ +EL G D  +  RA + G+QEYVEA +F  F +T +
Sbjct: 83  MEDILTESEIKLDGVRQKI-FQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRS 141

Query: 158 LLDLEELNAGLL------------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRL 200
           L+ ++E+N  L+            P SD   +      L++   DYLLG+ADLTGELMR+
Sbjct: 142 LISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRM 201

Query: 201 AIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLS 260
            I  + +G+++   ++ +F R +Y   + +        ++  K+ T+ QS+ K+ENAC +
Sbjct: 202 CINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNT--GPYEVSKKLYTLKQSLAKVENACYA 259

Query: 261 VHVRGSEYTLLGSSDPS 277
           + VRGSE      +D  
Sbjct: 260 LKVRGSEIPKHMLADVF 276

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C Length = 298

 Score =  190 bits (484), Expect = 1e-59
 Identities = 75/269 (27%), Positives = 121/269 (44%), Gaps = 37/269 (13%)

Query: 42  KRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRD----N 97
                +  +S +   F  Y+  L   +++ ER+VK SRDITI SK++IF +HS D    N
Sbjct: 19  IPAAQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQN 78

Query: 98  KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 157
           KE+VL++A   L  +       +  EL+  D ++ R +YSPG+QE+++A T+ ++     
Sbjct: 79  KEKVLEEARQRLNKLIAVNFRAVALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHED 138

Query: 158 LLDLEELN-------------------------------AGLLPLSDPAIEPLQINVFDY 186
                E                                   +  +  P      ++  +Y
Sbjct: 139 AEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIAQVESPKKFQFFVDPTEY 198

Query: 187 LLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDT 246
           +LGL+DLTGELMR  I  +  G+ +     C+  +  Y     +        ++  K+ T
Sbjct: 199 ILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSG--YISLNCQRARELWRKITT 256

Query: 247 MLQSVLKIENACLSVHVRGSEYTLLGSSD 275
           M QSVLK EN C +V VRG E    G++ 
Sbjct: 257 MKQSVLKAENVCYNVKVRGGEAAKWGATF 285

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A Length = 249

 Score =  186 bits (472), Expect = 2e-58
 Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 11/235 (4%)

Query: 41  AKRPRTITTESYM--KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSR--- 95
                +    S     D F+NY  Y++   E RE +    R+I   SK+   ++      
Sbjct: 6   HHHHHSQDPMSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSD 65

Query: 96  -DNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR 154
                     A   +E    +Y  +L + +    +++    ++   Q  +       +  
Sbjct: 66  LSQISAACGLARKQVELCAQKY-QKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIYLE 124

Query: 155 TGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAE 214
            G L+  E +   +L L     E   ++V DYLLG+  L  EL R A   ++ G+ E   
Sbjct: 125 AGFLVTRETVAE-MLGLKISQSEGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERPL 183

Query: 215 KICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYT 269
            I  F  D+     L+      N  ++ + D +   V KIE     V +RG    
Sbjct: 184 NISHFIGDLNTGFRLLNL---KNDGLRKRFDALKYDVKKIEEVVYDVSIRGLSSK 235

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A Length = 240

 Score =  185 bits (470), Expect = 3e-58
 Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 11/223 (4%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH------SRDNKEEVLKKAE 106
           + + F    G+L    + RE + K  + +   +++++  +          +  +   KA 
Sbjct: 15  VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 74

Query: 107 ADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNA 166
                VK   ++ L  +     +++    +   +Q  V  A F  +  T TL+  E +  
Sbjct: 75  EHFGTVKTH-LTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 133

Query: 167 GLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRE 226
            +L +     +   ++V DYL G+  L  EL RL++  ++ G+      I  F  ++   
Sbjct: 134 -ILGIEPDREKGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 192

Query: 227 LTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYT 269
             L+      N  ++ + D +   V K+E     + +RG    
Sbjct: 193 FRLLNL---KNDSLRKRYDGLKYDVKKVEEVVYDLSIRGFNKE 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3qb5_K	290	Translin-associated protein X; alpha helical bundl	100.0
3axj_B	298	TRAX, translin associated factor X, isoform B; tra	100.0
3axj_A	249	GM27569P, translin; translin/TRAX heterodimer, pas	100.0
1j1j_A	240	Translin; testis/brain RNA binding protein, ssDNA	100.0

>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J

Probab=100.00  E-value=5.3e-67  Score=486.88  Aligned_cols=238  Identities=34%  Similarity=0.582  Sum_probs=203.3

Q ss_pred             CCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHH
Q 023134           45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRD---NKEEVLKKAEADLEAVKDQYISRLV  121 (287)
Q Consensus        45 ~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~---~~~~~l~~A~~~L~~v~~~~~~~La  121 (287)
                      +...+++++.++|++|+++||++||+||+|+|+|||||++||++||+||+..   +.++++++|++.|.++++ ++.+|+
T Consensus        27 ~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~-~~~~La  105 (290)
T 3qb5_K           27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQ-KIFQVA  105 (290)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3467789999999999999999999999999999999999999999999643   356899999999999976 799999


Q ss_pred             HHhcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCC-----------------CcccChh
Q 023134          122 KELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIE-----------------PLQINVF  184 (287)
Q Consensus       122 ~~L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~-----------------~~~V~~~  184 (287)
                      ++|++.++|+|+++|++|+||||||++|++||++|+|+|++|+++.|......+..                 .|+|+++
T Consensus       106 ~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~e  185 (290)
T 3qb5_K          106 QELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPV  185 (290)
T ss_dssp             HHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------CEECCCCHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccccceecCCHH
Confidence            99999999999999999999999999999999999999999999877533222111                 3899999


Q ss_pred             hHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC-cchhhHHHHHHHHHHHHhhhhhhee
Q 023134          185 DYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS-DMKTKMDTMLQSVLKIENACLSVHV  263 (287)
Q Consensus       185 dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~-~LRkK~D~lk~slkKiE~v~Ydl~v  263 (287)
                      |||+||+||||||||||||+|+.||++.|++||+||++||++|++|  +++ |+ +||||+|+|||||+|||++|||++|
T Consensus       186 DYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--~~~-~~~~LrKK~d~lk~svkKvE~v~Ydl~v  262 (290)
T 3qb5_K          186 DYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFI--GNT-GPYEVSKKLYTLKQSLAKVENACYALKV  262 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH--GGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc--CCC-CChhhhHHHHHHHHHHHHHHHHhhheee
Confidence            9999999999999999999999999999999999999999999999  445 55 9999999999999999999999999


Q ss_pred             eccccccCCCCCc-ccccCCCCCC
Q 023134          264 RGSEYTLLGSSDP-SFLMGVPDMQ  286 (287)
Q Consensus       264 Rg~e~~~~~~~~~-~~~~~~~~~~  286 (287)
                      ||+|+|+|+..|- +.-.++.|++
T Consensus       263 Rg~e~pk~~~~d~~~~~~~~~~~~  286 (290)
T 3qb5_K          263 RGSEIPKHMLADVFSVKTEMIDQE  286 (290)
T ss_dssp             HTTCCCCCCC--------------
T ss_pred             ecCCCCcccchhhhcCCCCCCccc
Confidence            9999999887765 5545555543

>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C

Probab=100.00  E-value=1.4e-64  Score=472.11  Aligned_cols=228  Identities=33%  Similarity=0.543  Sum_probs=207.1

Q ss_pred             CCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHH
Q 023134           45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSR----DNKEEVLKKAEADLEAVKDQYISRL  120 (287)
Q Consensus        45 ~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~----~~~~~~l~~A~~~L~~v~~~~~~~L  120 (287)
                      .++++++++.++|++|+++||++||+||+|+|+|||||+.||++||.||+.    .+.+++|++|++.|.++++++++.|
T Consensus        22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~l  101 (298)
T 3axj_B           22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAV  101 (298)
T ss_dssp             -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999964    3456799999999999988788999


Q ss_pred             HHHhcCCChhhhhhhcchhHHHHHHHHHHHHHHh---c------CCCCCHHHHhhccCCCCC------------------
Q 023134          121 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR---T------GTLLDLEELNAGLLPLSD------------------  173 (287)
Q Consensus       121 a~~L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~---~------~~Llt~eev~~~l~~l~~------------------  173 (287)
                      ++++++.++|+|+++|++|+||||||++|++||+   +      |+|+|++||++.|.....                  
T Consensus       102 a~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~~~~d~  181 (298)
T 3axj_B          102 ALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIA  181 (298)
T ss_dssp             HHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC----------------
T ss_pred             HHHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHhccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999   8      999999999987742111                  


Q ss_pred             ----CCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHH
Q 023134          174 ----PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQ  249 (287)
Q Consensus       174 ----~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~  249 (287)
                          +....|+|+++|||+||+||||||||||||+|+.||++.|++||+||++||.+|++|  +++.+++||||+|+|||
T Consensus       182 ~~~~~~~~~f~v~~edYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--nlkn~~~LRKK~D~lk~  259 (298)
T 3axj_B          182 QVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISL--NCQRARELWRKITTMKQ  259 (298)
T ss_dssp             ----CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTC--CCTTCHHHHHHHHHHHH
T ss_pred             ccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence                111268999999999999999999999999999999999999999999999999999  56623899999999999


Q ss_pred             HHHHHHhhhhhheeeccccccCCCC
Q 023134          250 SVLKIENACLSVHVRGSEYTLLGSS  274 (287)
Q Consensus       250 slkKiE~v~Ydl~vRg~e~~~~~~~  274 (287)
                      +|+|||++|||++|||+|+|.|++.
T Consensus       260 svkKvE~v~Ydl~vRg~e~~~~~~~  284 (298)
T 3axj_B          260 SVLKAENVCYNVKVRGGEAAKWGAT  284 (298)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHTC--
T ss_pred             HHHHHHHHHHHheecCCCccccccc
Confidence            9999999999999999999998854

>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A

Probab=100.00  E-value=6.2e-64  Score=457.28  Aligned_cols=222  Identities=22%  Similarity=0.317  Sum_probs=201.5

Q ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023134           49 TESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRD----NKEEVLKKAEADLEAVKDQYISRLVKEL  124 (287)
Q Consensus        49 ~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~----~~~~~l~~A~~~L~~v~~~~~~~La~~L  124 (287)
                      +++++.++|+.|+++||++||+||+|+|+|||||+.||++||.+|+..    +.++++++|++.|+++++ .+++|++++
T Consensus        16 ~~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l   94 (249)
T 3axj_A           16 SNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELV   94 (249)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            346889999999999999999999999999999999999999999643    356789999999999988 689999999


Q ss_pred             cCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhh
Q 023134          125 QGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGR  204 (287)
Q Consensus       125 ~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~  204 (287)
                      ++.++|+|++.|++|+||||||++|++||++|+|+|++|+++.|. ++.....+|+|+++|||+||+||||||||||||+
T Consensus        95 ~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~-~~~~~~~~f~v~~edYLlGL~DLtGEL~R~ain~  173 (249)
T 3axj_A           95 PAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLG-LKISQSEGFHLDVEDYLLGILQLASELSRFATNS  173 (249)
T ss_dssp             CTTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT-CBSSTTTSSBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhc-cccCCCcccccCHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999999999999999999999999999999999999998874 4444456799999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccccccCCCCCc
Q 023134          205 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDP  276 (287)
Q Consensus       205 v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e~~~~~~~~~  276 (287)
                      |+.||++.|++|++||++||.+|+.|  +++ |++||||+|++||+|+|||++|||++|||+ .|..++++|
T Consensus       174 v~~Gd~~~~~~i~~fm~~Ly~~f~~L--n~~-n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~-~~~~~~~~~  241 (249)
T 3axj_A          174 VTMGDYERPLNISHFIGDLNTGFRLL--NLK-NDGLRKRFDALKYDVKKIEEVVYDVSIRGL-SSKEKDQQE  241 (249)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHHHHHHT--CCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC------
T ss_pred             HhcCChHHHHHHHHHHHHHHHHHHhc--CCC-CccHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCccccCC
Confidence            99999999999999999999999999  555 799999999999999999999999999999 788888877

>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A

Probab=100.00  E-value=1.1e-63  Score=453.56  Aligned_cols=213  Identities=19%  Similarity=0.346  Sum_probs=199.3

Q ss_pred             cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023134           50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRD------NKEEVLKKAEADLEAVKDQYISRLVKE  123 (287)
Q Consensus        50 ~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~------~~~~~l~~A~~~L~~v~~~~~~~La~~  123 (287)
                      ++++.++|++|+++||++||+||+|+|+|||||+.||++||.+|+..      +.++++++|++.|+++.+ .+++|+++
T Consensus        12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~   90 (240)
T 1j1j_A           12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK   90 (240)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            47899999999999999999999999999999999999999999643      356789999999999987 68999999


Q ss_pred             hcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhh
Q 023134          124 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIG  203 (287)
Q Consensus       124 L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain  203 (287)
                      +++.++|+|++.|++|+||||||++|++||++|+|+|++|+++.| +++.+...+|+|+++|||+||+||||||||||||
T Consensus        91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L-~~~~~~~~~f~v~~edYLlGL~DltGEL~R~avn  169 (240)
T 1j1j_A           91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEIL-GIEPDREKGFHLDVEDYLSGVLILASELSRLSVN  169 (240)
T ss_dssp             SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-CCCccccccCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887 4555666789999999999999999999999999


Q ss_pred             hhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccc
Q 023134          204 RISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE  267 (287)
Q Consensus       204 ~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e  267 (287)
                      +|+.||++.|++|++||++||.+|++|  +++ |++||||+|++||+|+|||++|||++|||++
T Consensus       170 ~v~~Gd~~~~~~i~~fm~~Ly~~f~~L--nl~-n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~  230 (240)
T 1j1j_A          170 SVTAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGFN  230 (240)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHhcCChHhHHHHHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHHHHHHHHHHHheecCCC
Confidence            999999999999999999999999999  555 7999999999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1j1ja_	217	a.118.16.1 (A:) Translin {Human (Homo sapiens) [Ta	5e-57

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  180 bits (458), Expect = 5e-57
 Identities = 42/219 (19%), Positives = 86/219 (39%), Gaps = 11/219 (5%)

Query: 53  MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH------SRDNKEEVLKKAE 106
           + + F    G+L    + RE + K  + +   +++++  +          +  +   KA 
Sbjct: 3   VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAR 62

Query: 107 ADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNA 166
                VK    + L  +     +++    +   +Q  V  A F  +  T TL+  E +  
Sbjct: 63  EHFGTVKTHL-TSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTE 121

Query: 167 GLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRE 226
            L    D   +   ++V DYL G+  L  EL RL++  ++ G+      I  F  ++   
Sbjct: 122 ILGIEPDRE-KGFHLDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSG 180

Query: 227 LTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 265
             L+      N  ++ + D +   V K+E     + +RG
Sbjct: 181 FRLLNL---KNDSLRKRYDGLKYDVKKVEEVVYDLSIRG 216

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1j1ja_	217	Translin {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Translin
family: Translin
domain: Translin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-62  Score=437.03  Aligned_cols=211  Identities=19%  Similarity=0.344  Sum_probs=196.6

Q ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023134           51 SYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSR------DNKEEVLKKAEADLEAVKDQYISRLVKEL  124 (287)
Q Consensus        51 ~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~------~~~~~~l~~A~~~L~~v~~~~~~~La~~L  124 (287)
                      |++.++|++|+++||++||+||+|+|+|||||+.||++||.+|+.      .+.++++++|.+.++++++ .+.++++++
T Consensus         1 m~~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~l~~~~   79 (217)
T d1j1ja_           1 MSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTKF   79 (217)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence            467899999999999999999999999999999999999999962      2345689999999999987 799999999


Q ss_pred             cCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhh
Q 023134          125 QGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGR  204 (287)
Q Consensus       125 ~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~  204 (287)
                      ++.++|+|++.|++|+||||||++|++||++|+|+|++++++.+. ++.+...+|+|+++|||+||+||||||||+|||+
T Consensus        80 ~~~~~y~y~~~~~~~lQE~vEA~~f~~~l~~~~l~s~eev~~~l~-~~~~~~~~~~v~~~dYL~Gl~DltGEL~R~ain~  158 (217)
T d1j1ja_          80 PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILG-IEPDREKGFHLDVEDYLSGVLILASELSRLSVNS  158 (217)
T ss_dssp             CGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT-CCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHhHhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC-CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998774 4445566899999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeecc
Q 023134          205 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGS  266 (287)
Q Consensus       205 v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~  266 (287)
                      ++.||++.|.++++||++||.+|+.|  +++ |++||||+|++||+|+|||++|||++|||+
T Consensus       159 v~~gd~~~~~~i~~f~~~l~~~f~~l--~~~-~~~LrkK~d~~k~sl~KvE~~~Ydl~vRGl  217 (217)
T d1j1ja_         159 VTAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGF  217 (217)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHhh--cCC-ChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999  444 799999999999999999999999999996