Citrus Sinensis ID: 023135

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MEERKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFIYDKEDDDDYYYDDDSVESEDEYL
ccHHHccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccccEEEEEEcccHHHHHccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHcccEEEEcccccccccccccHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
ccccEEcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHccccEEccHHHHHHHHHHcccHHccccccccEEcHHHHHHccccEEEcccccccccccccccHHHHHHHccccEEccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
meerkvvregtnsaepprdrpvrvyadGIYDLFHFGHARALEQAkklfpntyllvgcnndedthkykgktvmtDKERYESlrhcrwvdevipdapwvvtqdfldkhqidyvahdslpyadatgsgkDVYEFVKSIGkfketkrtdgistSDLIMRIVKDYNQYVTRnldrgytrkelGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFiydkeddddyyydddsvesedeyl
meerkvvregtnsaepprdrpvrVYADGIYDLFHFGHARALEQAKKLFPNTYLLVgcnndedthkykgktvmtdKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSigkfketkrtdgistsdliMRIVKDYNQyvtrnldrgytrkelgvsyvkekrlrmnMGLKKLREKVKKHQEKIQIvaktasmrrnewVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGfiydkeddddyyYDDDSVESEDEYL
MEERKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFIydkeddddyyydddsvesedeyL
*********************VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGLKKL********EKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFIYDKEDDDDYYY************
**ERK*****************RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVT***************************************EKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKM********************************************
****************PRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGLKKLR********KIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFIYDKEDDDDYYYDD**********
**ERKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLR*******************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEERKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGxxxxxxxxxxxxxxxxxxxxxASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFIYDKEDDDDYYYDDDSVESEDEYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q9Y5K3369 Choline-phosphate cytidyl yes no 0.808 0.628 0.528 8e-69
Q811Q9369 Choline-phosphate cytidyl yes no 0.808 0.628 0.524 3e-68
Q9QZC4369 Choline-phosphate cytidyl yes no 0.808 0.628 0.524 3e-68
O74975362 Probable choline-phosphat yes no 0.648 0.513 0.6 2e-64
P49585367 Choline-phosphate cytidyl no no 0.759 0.594 0.526 2e-61
P19836367 Choline-phosphate cytidyl no no 0.759 0.594 0.526 2e-61
P13259424 Choline-phosphate cytidyl yes no 0.679 0.459 0.522 3e-61
P49586367 Choline-phosphate cytidyl no no 0.759 0.594 0.526 3e-61
P49584367 Choline-phosphate cytidyl no no 0.759 0.594 0.522 1e-60
P49583362 Putative choline-phosphat yes no 0.700 0.555 0.460 1e-53
>sp|Q9Y5K3|PCY1B_HUMAN Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1 Back     alignment and function desciption
 Score =  260 bits (664), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 131/248 (52%), Positives = 170/248 (68%), Gaps = 16/248 (6%)

Query: 17  PRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKE 76
           P DRPVRVYADGI+DLFH GHARAL QAK LFPN+YLLVG  +D+ THK+KG TVM + E
Sbjct: 72  PADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAE 131

Query: 77  RYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG 136
           RYE+LRHCR+VDEVI DAPW +T +FL+KH+ID+VAHD +PY+ A     DVY+ +K  G
Sbjct: 132 RYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSA--GSDDVYKHIKEAG 189

Query: 137 KFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGLKKL 196
            F  T+RT+GISTSD+I RIV+DY+ Y  RNL RGYT KEL VS++ EKR R    + K+
Sbjct: 190 MFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKM 249

Query: 197 REKVKKHQEK----IQIVAKTASMRRNEWVENADRLVAGFLE----------MFEERCHK 242
           +EKVK  +E+    +  V + +     +W E +   +  FLE          MF+ER  +
Sbjct: 250 KEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSR 309

Query: 243 MGTAIKDR 250
           M  A+  +
Sbjct: 310 MLQALSPK 317
Controls phosphatidylcholine synthesis.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 5
>sp|Q811Q9|PCY1B_MOUSE Choline-phosphate cytidylyltransferase B OS=Mus musculus GN=Pcyt1b PE=1 SV=2 Back     alignment and function description
>sp|Q9QZC4|PCY1B_RAT Choline-phosphate cytidylyltransferase B OS=Rattus norvegicus GN=Pcyt1b PE=2 SV=1 Back     alignment and function description
>sp|O74975|PCY1_SCHPO Probable choline-phosphate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.02c PE=1 SV=3 Back     alignment and function description
>sp|P49585|PCY1A_HUMAN Choline-phosphate cytidylyltransferase A OS=Homo sapiens GN=PCYT1A PE=1 SV=2 Back     alignment and function description
>sp|P19836|PCY1A_RAT Choline-phosphate cytidylyltransferase A OS=Rattus norvegicus GN=Pcyt1a PE=1 SV=2 Back     alignment and function description
>sp|P13259|PCY1_YEAST Choline-phosphate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCT1 PE=1 SV=2 Back     alignment and function description
>sp|P49586|PCY1A_MOUSE Choline-phosphate cytidylyltransferase A OS=Mus musculus GN=Pcyt1a PE=1 SV=1 Back     alignment and function description
>sp|P49584|PCY1A_CRIGR Choline-phosphate cytidylyltransferase A OS=Cricetulus griseus GN=PCYT1A PE=2 SV=1 Back     alignment and function description
>sp|P49583|PCY1_CAEEL Putative choline-phosphate cytidylyltransferase OS=Caenorhabditis elegans GN=F08C6.2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
356530227285 PREDICTED: choline-phosphate cytidylyltr 0.923 0.929 0.815 1e-126
359473086289 PREDICTED: choline-phosphate cytidylyltr 0.853 0.847 0.867 1e-125
255585453298 cholinephosphate cytidylyltransferase, p 0.898 0.865 0.820 1e-125
224071051281 predicted protein [Populus trichocarpa] 0.857 0.875 0.852 1e-124
358248066284 uncharacterized protein LOC100791886 [Gl 0.909 0.919 0.803 1e-123
224137812241 predicted protein [Populus trichocarpa] 0.825 0.983 0.873 1e-123
449456522332 PREDICTED: choline-phosphate cytidylyltr 0.905 0.783 0.787 1e-122
147818108309 hypothetical protein VITISV_025309 [Viti 0.853 0.792 0.802 1e-121
356553731318 PREDICTED: choline-phosphate cytidylyltr 0.874 0.789 0.821 1e-121
363806722318 uncharacterized protein LOC100807840 [Gl 0.874 0.789 0.817 1e-120
>gi|356530227|ref|XP_003533684.1| PREDICTED: choline-phosphate cytidylyltransferase B-like [Glycine max] Back     alignment and taxonomy information
 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/271 (81%), Positives = 239/271 (88%), Gaps = 6/271 (2%)

Query: 1   MEERKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNND 60
           MEE++  + G     P    PVRVYADGIYDLFHFGHAR+LEQAKKLFPNTYLLVGC ND
Sbjct: 1   MEEQEECQVGETKETPTP--PVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCND 58

Query: 61  EDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYAD 120
           E THKYKGKTVMT+KERYESLRHCRWVDEVIPDAPWV+TQ+FLDKHQIDYVAHDSLPYAD
Sbjct: 59  EITHKYKGKTVMTEKERYESLRHCRWVDEVIPDAPWVITQEFLDKHQIDYVAHDSLPYAD 118

Query: 121 ATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVS 180
           A+G+GKDVYE+VKS+GKFKETKRTDGISTSD+IMRI+KDYNQYV RNLDRGYTRKELGVS
Sbjct: 119 ASGAGKDVYEYVKSVGKFKETKRTDGISTSDIIMRIIKDYNQYVMRNLDRGYTRKELGVS 178

Query: 181 YVKEKRLRMNMGLKKLREKVKKHQE----KIQIVAKTASMRRNEWVENADRLVAGFLEMF 236
           YVKEKRLRMNMGLKKL+E+VKK QE    KIQ V K A M  NEWVENADRLVAGFLEMF
Sbjct: 179 YVKEKRLRMNMGLKKLQERVKKQQEEVGKKIQTVGKIAGMHPNEWVENADRLVAGFLEMF 238

Query: 237 EERCHKMGTAIKDRIQERLRGQHLIGFIYDK 267
           EE CHKMGTAI+DRIQERLR Q L   +YD+
Sbjct: 239 EEGCHKMGTAIRDRIQERLRAQQLKSLLYDE 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473086|ref|XP_003631247.1| PREDICTED: choline-phosphate cytidylyltransferase B-like isoform 1 [Vitis vinifera] gi|297738012|emb|CBI27213.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255585453|ref|XP_002533420.1| cholinephosphate cytidylyltransferase, putative [Ricinus communis] gi|223526733|gb|EEF28963.1| cholinephosphate cytidylyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224071051|ref|XP_002303347.1| predicted protein [Populus trichocarpa] gi|222840779|gb|EEE78326.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248066|ref|NP_001240060.1| uncharacterized protein LOC100791886 [Glycine max] gi|255639289|gb|ACU19942.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224137812|ref|XP_002326446.1| predicted protein [Populus trichocarpa] gi|222833768|gb|EEE72245.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456522|ref|XP_004145998.1| PREDICTED: choline-phosphate cytidylyltransferase B-like [Cucumis sativus] gi|449519894|ref|XP_004166969.1| PREDICTED: choline-phosphate cytidylyltransferase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147818108|emb|CAN67110.1| hypothetical protein VITISV_025309 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356553731|ref|XP_003545206.1| PREDICTED: choline-phosphate cytidylyltransferase B-like [Glycine max] Back     alignment and taxonomy information
>gi|363806722|ref|NP_001242526.1| uncharacterized protein LOC100807840 [Glycine max] gi|255635323|gb|ACU18015.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2129705304 CCT2 "phosphorylcholine cytidy 0.874 0.825 0.781 1.1e-105
TAIR|locus:2062591332 CCT1 "phosphorylcholine cytidy 0.853 0.737 0.788 1.4e-105
ZFIN|ZDB-GENE-061220-4343 pcyt1ba "phosphate cytidylyltr 0.759 0.635 0.593 9.2e-68
UNIPROTKB|F1NQZ5340 PCYT1B "Uncharacterized protei 0.832 0.702 0.549 2e-65
UNIPROTKB|Q9Y5K3369 PCYT1B "Choline-phosphate cyti 0.759 0.590 0.566 6.7e-65
UNIPROTKB|E2RFH6321 PCYT1B "Uncharacterized protei 0.759 0.679 0.562 2.3e-64
UNIPROTKB|E2RFX3357 PCYT1B "Uncharacterized protei 0.759 0.610 0.562 2.3e-64
UNIPROTKB|F1SPY1369 LOC100152643 "Uncharacterized 0.759 0.590 0.562 2.3e-64
UNIPROTKB|K7GM95354 LOC100152643 "Uncharacterized 0.759 0.615 0.562 2.3e-64
UNIPROTKB|K7GNX2339 LOC100152643 "Uncharacterized 0.759 0.643 0.562 2.3e-64
TAIR|locus:2129705 CCT2 "phosphorylcholine cytidylyltransferase2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
 Identities = 200/256 (78%), Positives = 227/256 (88%)

Query:     3 ERKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDED 62
             E KV   G +S+    DRPVRVYADGI+DLFHFGHARA+EQAKK FPNTYLLVGC NDE 
Sbjct:     6 ENKV--SGGDSSSS--DRPVRVYADGIFDLFHFGHARAIEQAKKSFPNTYLLVGCCNDEI 61

Query:    63 THKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADAT 122
             T+K+KGKTVMT+ ERYESLRHC+WVDEVIPDAPWV+T +FLDKH+IDYVAHD+LPYAD +
Sbjct:    62 TNKFKGKTVMTESERYESLRHCKWVDEVIPDAPWVLTTEFLDKHKIDYVAHDALPYADTS 121

Query:   123 GSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYV 182
             G+G DVYEFVKSIGKFKETKRT+GISTSD+IMRIVKDYNQYV RNLDRGY+R+ELGVS+ 
Sbjct:   122 GAGNDVYEFVKSIGKFKETKRTEGISTSDIIMRIVKDYNQYVLRNLDRGYSREELGVSF- 180

Query:   183 KEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHK 242
             +EKRLR+NM LKKL+EKVK+ QEKIQ VAKTA M  +EW+ENADR VAGFLEMFEE CHK
Sbjct:   181 EEKRLRVNMRLKKLQEKVKEQQEKIQTVAKTAGMHHDEWLENADRWVAGFLEMFEEGCHK 240

Query:   243 MGTAIKDRIQERLRGQ 258
             MGTAI+D IQ+RL  Q
Sbjct:   241 MGTAIRDGIQQRLMRQ 256
GO:0003824 "catalytic activity" evidence=IEA
GO:0004105 "choline-phosphate cytidylyltransferase activity" evidence=ISS;IMP
GO:0005634 "nucleus" evidence=ISM
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IMP
TAIR|locus:2062591 CCT1 "phosphorylcholine cytidylyltransferase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061220-4 pcyt1ba "phosphate cytidylyltransferase 1, choline, beta a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQZ5 PCYT1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5K3 PCYT1B "Choline-phosphate cytidylyltransferase B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFH6 PCYT1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFX3 PCYT1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPY1 LOC100152643 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GM95 LOC100152643 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GNX2 LOC100152643 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9QZC4PCY1B_RAT2, ., 7, ., 7, ., 1, 50.52410.80830.6287yesno
Q811Q9PCY1B_MOUSE2, ., 7, ., 7, ., 1, 50.52410.80830.6287yesno
Q9Y5K3PCY1B_HUMAN2, ., 7, ., 7, ., 1, 50.52820.80830.6287yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.150.824
3rd Layer2.7.70.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
PLN02413294 PLN02413, PLN02413, choline-phosphate cytidylyltra 1e-176
cd02174150 cd02174, CCT, CTP:phosphocholine cytidylyltransfer 4e-90
PTZ00308353 PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl 2e-43
COG0615140 COG0615, TagD, Cytidylyltransferase [Cell envelope 8e-40
cd02173152 cd02173, ECT, CTP:phosphoethanolamine cytidylyltra 1e-36
PLN02406418 PLN02406, PLN02406, ethanolamine-phosphate cytidyl 2e-31
PTZ00308353 PTZ00308, PTZ00308, ethanolamine-phosphate cytidyl 7e-31
pfam01467148 pfam01467, CTP_transf_2, Cytidylyltransferase 4e-23
PLN02406418 PLN02406, PLN02406, ethanolamine-phosphate cytidyl 1e-22
cd02170136 cd02170, cytidylyltransferase, cytidylyltransferas 2e-22
TIGR0012566 TIGR00125, cyt_tran_rel, cytidyltransferase-like d 4e-19
cd02171129 cd02171, G3P_Cytidylyltransferase, glycerol-3-phos 2e-11
cd02172144 cd02172, RfaE_N, N-terminal domain of RfaE 2e-08
TIGR02199144 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, 3e-08
TIGR01518125 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate c 3e-08
COG2870467 COG2870, RfaE, ADP-heptose synthase, bifunctional 2e-04
PRK11316473 PRK11316, PRK11316, bifunctional heptose 7-phospha 7e-04
>gnl|CDD|215229 PLN02413, PLN02413, choline-phosphate cytidylyltransferase Back     alignment and domain information 
 Score =  487 bits (1254), Expect = e-176
 Identities = 221/288 (76%), Positives = 239/288 (82%), Gaps = 11/288 (3%)

Query: 1   MEERKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNND 60
                        +  P DRPVRVYADGIYDLFHFGHAR+LEQAKKLFPNTYLLVGC ND
Sbjct: 7   ASTAAASSGSATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCND 66

Query: 61  EDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYAD 120
           E THKYKGKTVMT+ ERYESLRHC+WVDEVIPDAPWV+TQ+FLDKH+IDYVAHD+LPYAD
Sbjct: 67  ELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAPWVITQEFLDKHRIDYVAHDALPYAD 126

Query: 121 ATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVS 180
           A+G+GKDVYEFVK IGKFKETKRTDGISTSD+IMRIVKDYNQYV RNL RGY+RK+LGVS
Sbjct: 127 ASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLARGYSRKDLGVS 186

Query: 181 YVKEKRLRMNMGLKKLREKVKKHQEK----IQIVAKTASMRRNEWVENADRLVAGFLEMF 236
           YVKEKRLR+NMGLKKLREKVK+ QEK    IQ VAKTA M RNEWVENADR VAGFLE F
Sbjct: 187 YVKEKRLRVNMGLKKLREKVKEQQEKVGEKIQTVAKTAGMHRNEWVENADRWVAGFLEKF 246

Query: 237 EERCHKMGTAIKDRIQERLRGQHLIGFIY-------DKEDDDDYYYDD 277
           EE CHKMGTAIKDRIQERL  Q   G +        D +DDDD YYD+
Sbjct: 247 EEGCHKMGTAIKDRIQERLMRQQSSGLLELLQNGDVDSDDDDDEYYDE 294

Length = 294
>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase Back     alignment and domain information
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT) Back     alignment and domain information
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase Back     alignment and domain information
>gnl|CDD|215227 PLN02406, PLN02406, ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase Back     alignment and domain information
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain Back     alignment and domain information
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|173923 cd02172, RfaE_N, N-terminal domain of RfaE Back     alignment and domain information
>gnl|CDD|131254 TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II Back     alignment and domain information
>gnl|CDD|130581 TIGR01518, g3p_cytidyltrns, glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|183085 PRK11316, PRK11316, bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
KOG2804348 consensus Phosphorylcholine transferase/cholinepho 100.0
PLN02413294 choline-phosphate cytidylyltransferase 100.0
cd02174150 CCT CTP:phosphocholine cytidylyltransferase. CTP:p 100.0
cd02173152 ECT CTP:phosphoethanolamine cytidylyltransferase ( 100.0
PLN02406418 ethanolamine-phosphate cytidylyltransferase 100.0
PTZ00308353 ethanolamine-phosphate cytidylyltransferase; Provi 100.0
KOG2803358 consensus Choline phosphate cytidylyltransferase/P 100.0
COG0615140 TagD Cytidylyltransferase [Cell envelope biogenesi 100.0
PLN02406418 ethanolamine-phosphate cytidylyltransferase 100.0
PTZ00308353 ethanolamine-phosphate cytidylyltransferase; Provi 100.0
KOG2803358 consensus Choline phosphate cytidylyltransferase/P 99.97
cd02172144 RfaE_N N-terminal domain of RfaE. RfaE is a protei 99.94
TIGR02199144 rfaE_dom_II rfaE bifunctional protein, domain II. 99.93
cd02170136 cytidylyltransferase cytidylyltransferase. The cyt 99.93
TIGR01518125 g3p_cytidyltrns glycerol-3-phosphate cytidylyltran 99.93
cd02171129 G3P_Cytidylyltransferase glycerol-3-phosphate cyti 99.91
PRK11316473 bifunctional heptose 7-phosphate kinase/heptose 1- 99.9
COG2870467 RfaE ADP-heptose synthase, bifunctional sugar kina 99.89
PRK00777153 phosphopantetheine adenylyltransferase; Provisiona 99.81
PRK00168159 coaD phosphopantetheine adenylyltransferase; Provi 99.74
PRK01170322 phosphopantetheine adenylyltransferase/unknown dom 99.7
TIGR01527165 arch_NMN_Atrans nicotinamide-nucleotide adenylyltr 99.7
PF01467157 CTP_transf_2: Cytidylyltransferase; InterPro: IPR0 99.69
cd02039143 cytidylyltransferase_like Cytidylyltransferase-lik 99.66
cd02163153 PPAT Phosphopantetheine adenylyltransferase. Phosp 99.63
cd02064180 FAD_synthetase_N FAD synthetase, N-terminal domain 99.61
TIGR01510155 coaD_prev_kdtB pantetheine-phosphate adenylyltrans 99.58
PRK13964140 coaD phosphopantetheine adenylyltransferase; Provi 99.56
COG0669159 CoaD Phosphopantetheine adenylyltransferase [Coenz 99.56
TIGR0012566 cyt_tran_rel cytidyltransferase-related domain. Pr 99.56
cd02166163 NMNAT_Archaea Nicotinamide/nicotinate mononucleoti 99.55
PRK05627305 bifunctional riboflavin kinase/FMN adenylyltransfe 99.49
cd02164143 PPAT_CoAS phosphopantetheine adenylyltransferase d 99.46
COG1019158 Predicted nucleotidyltransferase [General function 99.38
PRK07143279 hypothetical protein; Provisional 99.37
PRK01153174 nicotinamide-nucleotide adenylyltransferase; Provi 99.34
cd02168181 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide 99.33
PRK05379340 bifunctional nicotinamide mononucleotide adenylylt 99.32
PLN02388177 phosphopantetheine adenylyltransferase 99.32
cd02165192 NMNAT Nicotinamide/nicotinate mononucleotide adeny 99.27
cd02167158 NMNAT_NadR Nicotinamide/nicotinate mononucleotide 99.26
PRK00071203 nadD nicotinic acid mononucleotide adenylyltransfe 99.25
PRK13671298 hypothetical protein; Provisional 99.17
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 99.15
PRK08887174 nicotinic acid mononucleotide adenylyltransferase; 99.14
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 99.13
TIGR00482193 nicotinate (nicotinamide) nucleotide adenylyltrans 99.13
COG1057197 NadD Nicotinic acid mononucleotide adenylyltransfe 99.1
PRK06973243 nicotinic acid mononucleotide adenylyltransferase; 99.06
TIGR01526325 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr 99.03
PRK08099399 bifunctional DNA-binding transcriptional repressor 99.02
cd02169297 Citrate_lyase_ligase Citrate lyase ligase. Citrate 99.01
TIGR00124332 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP 99.0
smart00764182 Citrate_ly_lig Citrate lyase ligase C-terminal dom 98.97
PRK13793196 nicotinamide-nucleotide adenylyltransferase; Provi 98.96
cd09286225 NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti 98.78
PF05636 388 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr 98.71
COG1056172 NadR Nicotinamide mononucleotide adenylyltransfera 98.61
PRK13670 388 hypothetical protein; Provisional 98.61
KOG3351293 consensus Predicted nucleotidyltransferase [Genera 98.57
TIGR00083288 ribF riboflavin kinase/FMN adenylyltransferase. mu 98.53
PF06574157 FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof 98.44
COG0196304 RibF FAD synthase [Coenzyme metabolism] 98.41
COG1323358 Predicted nucleotidyltransferase [General function 98.29
PF08218182 Citrate_ly_lig: Citrate lyase ligase C-terminal do 98.29
PLN02945236 nicotinamide-nucleotide adenylyltransferase/nicoti 98.04
COG3053352 CitC Citrate lyase synthetase [Energy production a 96.85
TIGR00018282 panC pantoate--beta-alanine ligase. This family is 96.34
PLN02660284 pantoate--beta-alanine ligase 96.05
PRK00380281 panC pantoate--beta-alanine ligase; Reviewed 95.89
cd00560277 PanC Pantoate-beta-alanine ligase. PanC Pantoate-b 95.3
KOG3199234 consensus Nicotinamide mononucleotide adenylyl tra 94.68
PRK13477 512 bifunctional pantoate ligase/cytidylate kinase; Pr 93.01
PF02569280 Pantoate_ligase: Pantoate-beta-alanine ligase; Int 92.55
TIGR00339383 sopT ATP sulphurylase. Members of this family also 91.3
COG0414285 PanC Panthothenate synthetase [Coenzyme metabolism 86.26
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-82  Score=591.14  Aligned_cols=240  Identities=56%  Similarity=0.968  Sum_probs=226.8

Q ss_pred             CCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCC
Q 023135           16 PPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAP   95 (287)
Q Consensus        16 ~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p   95 (287)
                      .|.+||+|||++|+|||||.||+++|+|||++|||+|||||||+|+.+|++||++||+..||++.|+||+|||+||+++|
T Consensus        58 ~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~AP  137 (348)
T KOG2804|consen   58 LPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAP  137 (348)
T ss_pred             CCCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCC
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhHHHHHHHhhcCCchh
Q 023135           96 WVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRK  175 (287)
Q Consensus        96 ~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd~y~~Rnl~rg~~~~  175 (287)
                      |.+|++||++|+||||||+++||...  ..+|+|+.+|++|+|++|+||+|||||+||+||+++|+.|++|||+|||||+
T Consensus       138 W~lt~EFL~~HKIDfVAHDdIPY~s~--gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~k  215 (348)
T KOG2804|consen  138 WTLTPEFLEKHKIDFVAHDDIPYVSA--GSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSAK  215 (348)
T ss_pred             ccccHHHHHhcccceeeccCccccCC--CchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCHH
Confidence            99999999999999999999999943  4689999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 023135          176 ELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERL  255 (287)
Q Consensus       176 ~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~  255 (287)
                      ||||||+++++|+++++|++|++++|.++++++++   +.+++++|+++|++||.+||++|+++++  ++++.++++++|
T Consensus       216 eLnVsfl~~kk~~~~~k~~~lk~~vk~~~e~~~~~---~~~l~~kW~e~s~e~i~~fle~f~~~~~--~n~~~~~~~~rl  290 (348)
T KOG2804|consen  216 ELNVSFLKEKKLRLQNKVDELKEKVKEQQEKVKEF---SRDLIQKWEEKSREFIAGFLELFGKGGA--LNAFDDELKGRL  290 (348)
T ss_pred             hcchHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHhHHHHHHHHHHHhccccc--hhhhHhHHHHHH
Confidence            99999999999999999999999999999999998   5678999999999999999999999886  666666666666


Q ss_pred             hccCCCC
Q 023135          256 RGQHLIG  262 (287)
Q Consensus       256 ~~~~~~~  262 (287)
                      +.+.||+
T Consensus       291 ~~~~Sp~  297 (348)
T KOG2804|consen  291 LQALSPP  297 (348)
T ss_pred             HhhcCCC
Confidence            6666643

>PLN02413 choline-phosphate cytidylyltransferase Back     alignment and domain information
>cd02174 CCT CTP:phosphocholine cytidylyltransferase Back     alignment and domain information
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT) Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism] Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information
>cd02172 RfaE_N N-terminal domain of RfaE Back     alignment and domain information
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II Back     alignment and domain information
>cd02170 cytidylyltransferase cytidylyltransferase Back     alignment and domain information
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00777 phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase Back     alignment and domain information
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT) Back     alignment and domain information
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain Back     alignment and domain information
>cd02163 PPAT Phosphopantetheine adenylyltransferase Back     alignment and domain information
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme Back     alignment and domain information
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial Back     alignment and domain information
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain Back     alignment and domain information
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal Back     alignment and domain information
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed Back     alignment and domain information
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes Back     alignment and domain information
>COG1019 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PRK07143 hypothetical protein; Provisional Back     alignment and domain information
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain Back     alignment and domain information
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional Back     alignment and domain information
>PLN02388 phosphopantetheine adenylyltransferase Back     alignment and domain information
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase Back     alignment and domain information
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins Back     alignment and domain information
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PRK13671 hypothetical protein; Provisional Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase Back     alignment and domain information
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>cd02169 Citrate_lyase_ligase Citrate lyase ligase Back     alignment and domain information
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase Back     alignment and domain information
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain Back     alignment and domain information
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic Back     alignment and domain information
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function Back     alignment and domain information
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK13670 hypothetical protein; Provisional Back     alignment and domain information
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase Back     alignment and domain information
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2 Back     alignment and domain information
>COG0196 RibF FAD synthase [Coenzyme metabolism] Back     alignment and domain information
>COG1323 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6 Back     alignment and domain information
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase Back     alignment and domain information
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion] Back     alignment and domain information
>TIGR00018 panC pantoate--beta-alanine ligase Back     alignment and domain information
>PLN02660 pantoate--beta-alanine ligase Back     alignment and domain information
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed Back     alignment and domain information
>cd00560 PanC Pantoate-beta-alanine ligase Back     alignment and domain information
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional Back     alignment and domain information
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis [] Back     alignment and domain information
>TIGR00339 sopT ATP sulphurylase Back     alignment and domain information
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3hl4_A236 Crystal Structure Of A Mammalian Ctp:phosphocholine 6e-59
3elb_A341 Human Ctp: Phosphoethanolamine Cytidylyltransferase 1e-28
1coz_A129 Ctp:glycerol-3-Phosphate Cytidylyltransferase From 1e-08
2b7l_A132 Crystal Structure Of Ctp:glycerol-3-Phosphate Cytid 4e-08
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine Cytidylyltransferase With Cdp-Choline Length = 236 Back     alignment and structure 
Iteration: 1

 Score =  224 bits (570), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 102/167 (61%), Positives = 131/167 (78%), Gaps = 2/167 (1%)
Query: 17  PRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKE 76
           P +RPVRVYADGI+DLFH GHARAL QAK LFPNTYL+VG  +DE TH +KG TVM + E
Sbjct: 72  PCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENE 131
Query: 77  RYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG 136
           RY++++HCR+VDEV+ +APW +T +FL +H+ID+VAHD +PY+ A     DVY+ +K  G
Sbjct: 132 RYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSA--GSDDVYKHIKEAG 189
Query: 137 KFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVK 183
            F  T+RT+GISTSD+I RIV+DY+ Y  RNL RGYT KEL VS++ 
Sbjct: 190 MFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFIN 236
>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In Complex With Cmp Length = 341 Back     alignment and structure
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From Bacillus Subtilis Length = 129 Back     alignment and structure
>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate Cytidylyltransferase From Staphylococcus Aureus Length = 132 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3hl4_A236 Choline-phosphate cytidylyltransferase A; rossmann 1e-75
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 7e-67
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 9e-64
1coz_A129 Protein (glycerol-3-phosphate cytidylyltransferase 2e-55
2b7l_A132 Glycerol-3-phosphate cytidylyltransferase; rossman 2e-54
3glv_A143 Lipopolysaccharide core biosynthesis protein; stru 1e-11
3do8_A148 Phosphopantetheine adenylyltransferase; protein wi 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236 Back     alignment and structure
 Score =  229 bits (586), Expect = 1e-75
 Identities = 102/167 (61%), Positives = 131/167 (78%), Gaps = 2/167 (1%)

Query: 16  PPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDK 75
            P +RPVRVYADGI+DLFH GHARAL QAK LFPNTYL+VG  +DE TH +KG TVM + 
Sbjct: 71  TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNEN 130

Query: 76  ERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSI 135
           ERY++++HCR+VDEV+ +APW +T +FL +H+ID+VAHD +PY+ A     DVY+ +K  
Sbjct: 131 ERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSA--GSDDVYKHIKEA 188

Query: 136 GKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYV 182
           G F  T+RT+GISTSD+I RIV+DY+ Y  RNL RGYT KEL VS++
Sbjct: 189 GMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFI 235
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341 Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341 Back     alignment and structure
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129 Back     alignment and structure
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132 Back     alignment and structure
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143 Back     alignment and structure
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
3hl4_A236 Choline-phosphate cytidylyltransferase A; rossmann 100.0
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 100.0
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 99.98
1coz_A129 Protein (glycerol-3-phosphate cytidylyltransferase 99.88
2b7l_A132 Glycerol-3-phosphate cytidylyltransferase; rossman 99.87
3glv_A143 Lipopolysaccharide core biosynthesis protein; stru 99.85
3nv7_A157 Phosphopantetheine adenylyltransferase; helicobact 99.81
4f3r_A162 Phosphopantetheine adenylyltransferase; phosphopan 99.8
3k9w_A187 Phosphopantetheine adenylyltransferase; niaid, ssg 99.76
1vlh_A173 Phosphopantetheine adenylyltransferase; TM0741, st 99.73
3nbk_A177 Phosphopantetheine adenylyltransferase; PPAT, PHP; 99.73
3f3m_A168 Phosphopantetheine adenylyltransferase; PPAT, coen 99.73
3nd5_A171 Phosphopantetheine adenylyltransferase; PPAT, coen 99.72
1qjc_A158 Phosphopantetheine adenylyltransferase; coenzyme A 99.66
1o6b_A169 Phosphopantetheine adenylyltransferase; structural 99.6
1od6_A160 PPAT, phosphopantetheine adenylyltransferase; coen 99.57
3do8_A148 Phosphopantetheine adenylyltransferase; protein wi 99.55
2qtr_A189 Nicotinate (nicotinamide) nucleotide adenylyltran; 99.52
1kam_A194 Deamido-NAD(+), nicotinate-nucleotide adenylyltran 99.52
1yum_A242 'probable nicotinate-nucleotide adenylyltransferas 99.46
3h05_A177 Uncharacterized protein VPA0413; nucleotidylyl, tr 99.43
1k4m_A213 NAMN adenylyltransferase; nucleotidyltransferase; 99.42
1mrz_A293 Riboflavin kinase/FMN adenylyltransferase; rossman 99.4
2h29_A189 Probable nicotinate-nucleotide adenylyltransferase 99.36
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 99.35
1f9a_A168 Hypothetical protein MJ0541; alpha/beta, transfera 99.33
1ej2_A181 Nicotinamide mononucleotide adenylyltransferase; d 99.3
2x0k_A338 Riboflavin biosynthesis protein RIBF; riboflavin k 99.21
2qjo_A341 Bifunctional NMN adenylyltransferase/nudix hydrol; 99.18
3op1_A308 Macrolide-efflux protein; structural genomics, PSI 99.08
1kqn_A279 Nmnat, nicotinamide mononucleotide adenylyl transf 99.06
1nup_A252 FKSG76; NAD biosynthesis, mitochondria, pyridine a 99.01
2qjt_B352 Nicotinamide-nucleotide adenylyltransferase; two i 98.98
3gmi_A357 UPF0348 protein MJ0951; protein with unknown funct 98.86
2ejc_A280 Pantoate--beta-alanine ligase; X-RAY diffraction, 98.41
1jhd_A396 Sulfate adenylyltransferase; sulfurylase, APS, che 97.16
1v8f_A276 Pantoate-beta-alanine ligase; rossmann fold, dimer 97.04
1pei_A26 PEPC22; transferase, nucleotidyltransferase, repea 96.18
3ag6_A283 Pantothenate synthetase; ATP-dependent enzyme, ATP 96.16
3cov_A301 Pantothenate synthetase; pantothenate biosynthesis 96.08
3q12_A287 Pantoate--beta-alanine ligase; structural genomics 95.11
1v47_A349 ATP sulfurylase; product binding complex, zinc, ri 94.83
3inn_A314 Pantothenate synthetase; ssgcid, SBRI, UW, decode, 94.76
3uk2_A283 Pantothenate synthetase; AMP, structural genomics, 94.46
3mxt_A285 Pantothenate synthetase; alpha-beta-alpha, structu 93.2
3n8h_A264 Pantothenate synthetase; alpha-beta sandwich, liga 91.71
1peh_A35 Pepnh1; transferase, nucleotidyltransferase, repea 89.73
1g8f_A511 Sulfate adenylyltransferase; alpha-beta protein, b 82.13
3viq_A122 SWI5-dependent recombination DNA repair protein 1; 81.14
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.4e-47  Score=348.84  Aligned_cols=167  Identities=61%  Similarity=1.092  Sum_probs=138.1

Q ss_pred             CCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCC
Q 023135           15 EPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDA   94 (287)
Q Consensus        15 ~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~   94 (287)
                      ..|..+|++||++|+||+||.||+++|++|+++|+|++|||||++|+.+++.||.|++|.+||+++|++|+|||+|++++
T Consensus        70 ~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~~  149 (236)
T 3hl4_A           70 GTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNA  149 (236)
T ss_dssp             CCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESSC
T ss_pred             CCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEECC
Confidence            45678999999999999999999999999999998899999999999988889999999999999999999999999999


Q ss_pred             CCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhHHHHHHHhhcCCch
Q 023135           95 PWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTR  174 (287)
Q Consensus        95 p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd~y~~Rnl~rg~~~  174 (287)
                      ||.++.+|+++++||+|+||++++.+.  .+++.|+.++++|++++++||+|+|||+|++||+++|+.|++||++|||++
T Consensus       150 p~~l~~d~i~~~~~d~Vv~GDd~~~~~--~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~~y~~R~l~rg~~~  227 (236)
T 3hl4_A          150 PWTLTPEFLAEHRIDFVAHDDIPYSSA--GSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTA  227 (236)
T ss_dssp             CSSCCHHHHHHTTCCEEEEESSCCCCS--SCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHHC------------
T ss_pred             cCcCcHHHHHHcCCCEEEECCccccCC--CchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHHHHHHHHhcCCCCH
Confidence            999999999999999999999887643  357899999999999999999999999999999999999999999999999


Q ss_pred             hhhccchhh
Q 023135          175 KELGVSYVK  183 (287)
Q Consensus       175 ~~lnv~~~~  183 (287)
                      +||||||+|
T Consensus       228 ~~~~~~~~~  236 (236)
T 3hl4_A          228 KELNVSFIN  236 (236)
T ss_dssp             ---------
T ss_pred             HHhCCcccC
Confidence            999999986
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Back     alignment and structure
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Back     alignment and structure
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Back     alignment and structure
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A* Back     alignment and structure
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii} Back     alignment and structure
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A* Back     alignment and structure
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Back     alignment and structure
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A* Back     alignment and structure
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0 Back     alignment and structure
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A* Back     alignment and structure
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Back     alignment and structure
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Back     alignment and structure
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Back     alignment and structure
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Back     alignment and structure
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A* Back     alignment and structure
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Back     alignment and structure
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Back     alignment and structure
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus} Back     alignment and structure
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Back     alignment and structure
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Back     alignment and structure
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Back     alignment and structure
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Back     alignment and structure
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Back     alignment and structure
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Back     alignment and structure
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Back     alignment and structure
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A* Back     alignment and structure
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A* Back     alignment and structure
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Back     alignment and structure
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii} Back     alignment and structure
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima} Back     alignment and structure
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A Back     alignment and structure
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A* Back     alignment and structure
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ... Back     alignment and structure
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A* Back     alignment and structure
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis} Back     alignment and structure
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0 Back     alignment and structure
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A* Back     alignment and structure
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A* Back     alignment and structure
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1 Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1coza_126 c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr 3e-22
d1lw7a1163 c.26.1.3 (A:57-219) Transcriptional regulator NadR 8e-04
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

 Score = 87.7 bits (216), Expect = 3e-22
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 23  RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR 82
           +V   G +DL H+GH + LE+AK+L    YL+V  + DE   + + K   + + R   L 
Sbjct: 3   KVITYGTFDLLHWGHIKLLERAKQLGD--YLVVAISTDEFNLQKQKKAYHSYEHRKLILE 60

Query: 83  HCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETK 142
             R+VDEVIP+  W   +  +  H ID                +  ++F+K   +     
Sbjct: 61  TIRYVDEVIPEKNWEQKKQDIIDHNIDVFVMGD--------DWEGKFDFLKDQCEVVYLP 112

Query: 143 RTDGISTSDLIMRI 156
           RT+GIST+ +   I
Sbjct: 113 RTEGISTTKIKEEI 126
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1coza_126 CTP:glycerol-3-phosphate cytidylyltransferase {Bac 100.0
d1f9aa_164 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.5
d1lw7a1163 Transcriptional regulator NadR, NMN-adenylyltransf 99.45
d1ej2a_167 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.37
d1o6ba_163 Phosphopantetheine adenylyltransferase {Bacillus s 99.3
d1qjca_157 Phosphopantetheine adenylyltransferase {Escherichi 99.28
d1tfua_157 Phosphopantetheine adenylyltransferase {Mycobacter 99.22
d1od6a_160 Phosphopantetheine adenylyltransferase {Thermus th 99.18
d1vlha_157 Phosphopantetheine adenylyltransferase {Thermotoga 99.09
d1k4ma_213 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.07
d1kr2a_271 Nicotinamide mononucleotide (NMN) adenylyltransfer 98.95
d1nuua_233 Cytosolic NMN/NAMN adenylyltransferase {Human (Hom 98.95
d1mrza2157 FMN adenylyltransferase domain of bifunctional FAD 98.94
d1kama_189 Nicotinamide mononucleotide (NMN) adenylyltransfer 98.87
d1jhda2223 ATP sulfurylase catalytic domain {Sulfur-oxidizing 98.39
d1v8fa_276 Pantothenate synthetase (Pantoate-beta-alanine lig 93.86
d2a84a1286 Pantothenate synthetase (Pantoate-beta-alanine lig 92.79
d1ihoa_282 Pantothenate synthetase (Pantoate-beta-alanine lig 91.29
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.7e-35  Score=236.57  Aligned_cols=126  Identities=32%  Similarity=0.464  Sum_probs=115.0

Q ss_pred             CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 023135           21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQ  100 (287)
Q Consensus        21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~  100 (287)
                      |++|++.|+||+||.||+++|++|+++  |++|||||++|+.+.++|++|++|++||+++|++|+|||+|++..||..+.
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~--gd~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~   78 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQL--GDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQKK   78 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTT--SSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHH
T ss_pred             CcEEEEeeEeCCCCHHHHHHHHHHHhh--CceeeeeeeccchhhhccCcccCCHHHHHHHhhhhcccceeeecccccccH
Confidence            678999999999999999999999999  489999999999998888899999999999999999999999999998888


Q ss_pred             HHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHH
Q 023135          101 DFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRI  156 (287)
Q Consensus       101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI  156 (287)
                      +++.+++||++++|.++-.        .+..++..|+++.++|++|+|||.|++||
T Consensus        79 ~~i~~~~~d~~v~G~D~~~--------~~~~~~~~~~~i~~~~~~~iSST~i~~~I  126 (126)
T d1coza_          79 QDIIDHNIDVFVMGDDWEG--------KFDFLKDQCEVVYLPRTEGISTTKIKEEI  126 (126)
T ss_dssp             HHHHHTTCSEEEEEGGGTT--------TTGGGTTTSEEEEECCCTTCCHHHHHHTC
T ss_pred             hhhhccCCCEeeecccccc--------chHHHHcCCEEEEECCCCCccHHHHHHhC
Confidence            9999999999999986521        23456777899999999999999999886
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]} Back     information, alignment and structure
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]} Back     information, alignment and structure
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure