Citrus Sinensis ID: 023136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEEHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHcccccccHHHccccHHHHHHEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mklfehkpfdpravmgFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSstqllyqscpyqalTLFIigpfldglltnknvfafkyTPYVLFFIVLSCLISVSVNFSTFLVigktspvtYQVLGHLKTCLVLAFGYvllhdpfsWRNILGILIAVIGMVLYSYCCSlesqqkasetssqlpqvkegetdplinaekgtgdgvakapawnsnkdlha
Flexible Loop (DISEMBL)
mklfehkpfdpravMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKasetssqlpqvkegetdplinaekgtgdgvakapawnsnkdlha
Low Complexity Region (SEG)
MKLFEHKPFDPRAVMGFgvlngisigllnlslgfnsvgFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSlvillvgvgiATVTDlqlnvlgsvlsllavlTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Disordered region (IsUnstruct)
**********PRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL*************************************************
Disordered Region (DISOPRED)
******KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS******************************************************
Disordered Region (DISEMBL)
MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL*****************EGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Disordered Region (DISPRO)
MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q8RXL8	357	Uncharacterized membrane	yes	no	1.0	0.803	0.847	1e-143
Q9SRE4	347	UDP-galactose transporter	no	no	0.885	0.731	0.384	7e-45
Q1JQ66	313	Solute carrier family 35	yes	no	0.871	0.798	0.337	9e-35
Q7Z769	313	Solute carrier family 35	yes	no	0.773	0.709	0.357	4e-32
Q6PGC7	313	Solute carrier family 35	yes	no	0.773	0.709	0.348	5e-32
A4IFK2	313	Solute carrier family 35	yes	no	0.773	0.709	0.352	6e-32
Q9C521	336	UDP-galactose transporter	no	no	0.933	0.797	0.284	1e-21
Q9SFE9	341	GDP-mannose transporter G	no	no	0.909	0.765	0.276	1e-19
Q3E6T0	349	Probable sugar phosphate/	no	no	0.895	0.736	0.274	6e-14
Q9LFN3	351	Probable sugar phosphate/	no	no	0.878	0.717	0.254	6e-14

>sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1

 Score =  506 bits (1303), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/296 (84%), Positives = 269/296 (90%), Gaps = 9/296 (3%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 62  MKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           KKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKVS
Sbjct: 122 KKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIET 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGT------GDGVAK---APAWNSNKDLHA 287
           QQKASETS+QLPQ+KE E DPLI AE G+      G GV +   AP WNSNKD  A
Sbjct: 302 QQKASETSTQLPQMKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1

 Score =  181 bits (458), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 100/260 (38%), Positives = 164/260 (63%), Gaps = 6/260 (2%)

Query: 5   EHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFS 64
           +H P     ++ F ++  ISI  +N SL  NSVGFYQ++KL++IP   +LE +   K + 
Sbjct: 73  KHVPL--WELLWFSIVANISIAAMNFSLMLNSVGFYQISKLSMIPVVCVLEWILHSKHYC 130

Query: 65  RNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQL 124
           + ++ S++++++GVGI TVTD+++N  G + +  AV +T + QI   ++QKK+ V S +L
Sbjct: 131 KEVKASVMVVVIGVGICTVTDVKVNAKGFICACTAVFSTSLQQISIGSLQKKYSVGSFEL 190

Query: 125 LYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIG 184
           L ++ P QA++L I GPF+D LL+ K +  ++ T   +F I+LSC ++V  N S +L IG
Sbjct: 191 LSKTAPIQAISLLICGPFVDYLLSGKFISTYQMTYGAIFCILLSCALAVFCNISQYLCIG 250

Query: 185 KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKA 244
           + S  ++QVLGH+KT  VL  G++L     +++NI G+ IA++GMV+YS+   +E Q+ A
Sbjct: 251 RFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKNIAGMAIAIVGMVIYSWAVDIEKQRNA 310

Query: 245 SETSSQLPQVKEGETDPLIN 264
             T    P  K   T+  I 
Sbjct: 311 KST----PHGKHSMTEDEIK 326

UDP-galactose transporter that transports UDP-galactose, UDP-glucose and GDP-fucose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1JQ66|S35E3_DANRE Solute carrier family 35 member E3 OS=Danio rerio GN=slc35e3 PE=2 SV=1

 Score =  147 bits (371), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 140/252 (55%), Gaps = 2/252 (0%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           M +F  K   P  ++   +     +   NLSL  N++G YQ+ K+   P  I ++T+++R
Sbjct: 64  MDIFAPKSLRPSKILLLALSFCGFVVFTNLSLQSNTIGTYQLAKVMTTPVIIAIQTMYYR 123

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           K FS  I+L+LV + +GV + +  D++ N++G + + L VL T + Q+     Q + +V+
Sbjct: 124 KTFSTKIKLTLVPITLGVILNSYYDVRFNLMGMIFATLGVLVTSLYQVWVGAKQHELQVN 183

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           S QLLY   P  +  L ++ PF + L  +  +F   ++   LF ++LS +I+  VN S +
Sbjct: 184 SMQLLYYQAPMSSAFLLVLVPFFEPLTGDGGIFG-PWSFLALFMVLLSGVIAFLVNLSIY 242

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
            +IG TSPVTY + GH K C+ L  GYVL  DP S    LGIL  + G++ Y++   L  
Sbjct: 243 WIIGNTSPVTYNMFGHFKFCITLLGGYVLFQDPLSLNQGLGILCTLTGILAYTH-FKLAE 301

Query: 241 QQKASETSSQLP 252
           Q++     +Q P
Sbjct: 302 QEEGKSRLTQRP 313

Putative transporter.

Danio rerio (taxid: 7955)

>sp|Q7Z769|S35E3_HUMAN Solute carrier family 35 member E3 OS=Homo sapiens GN=SLC35E3 PE=2 SV=1

 Score =  138 bits (348), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 29  NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQL 88
           NLSL  N++G YQ+ K    P  I ++T  ++K FS  IQL+L+ + +GV + +  D++ 
Sbjct: 92  NLSLQNNTIGTYQLAKAMTTPVIIAIQTFCYQKTFSTRIQLTLIPITLGVILNSYYDVKF 151

Query: 89  NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLT 148
           N LG V + L VL T + Q+     Q + +V+S QLLY   P  +  L +  PF + +  
Sbjct: 152 NFLGMVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFG 211

Query: 149 NKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYV 208
              +F   ++   L  ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GYV
Sbjct: 212 EGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYV 270

Query: 209 LLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 252
           L  DP S    LGIL  + G++ Y++   L  Q+ +    +Q P
Sbjct: 271 LFKDPLSINQALGILCTLFGILAYTH-FKLSEQEGSRSKLAQRP 313

Putative transporter.

Homo sapiens (taxid: 9606)

>sp|Q6PGC7|S35E3_MOUSE Solute carrier family 35 member E3 OS=Mus musculus GN=Slc35e3 PE=2 SV=1

 Score =  138 bits (347), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 29  NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQL 88
           NLSL  N++G YQ+ K    P  I ++T +++K+FS  IQL+L+ + VGV + +  D++ 
Sbjct: 92  NLSLQNNTIGTYQLAKAMTTPVIIAIQTFWYQKRFSVRIQLTLIPITVGVILNSYYDVKF 151

Query: 89  NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLT 148
           + LG V + L V+ T + Q+     Q + +V+S QLLY   P  +  L +  PF + +  
Sbjct: 152 HSLGMVFAALGVVVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFA 211

Query: 149 NKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYV 208
              +F   ++   L  ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GY+
Sbjct: 212 EGGIFG-PWSVSALLMVLLSGIIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLCGGYI 270

Query: 209 LLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 252
           L  DP S    LGIL  + G++ Y++   L  Q+ +     Q P
Sbjct: 271 LFKDPLSVNQGLGILCTLFGILTYTH-FKLSEQEGSKSKLVQRP 313

Putative transporter.

Mus musculus (taxid: 10090)

>sp|A4IFK2|S35E3_BOVIN Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1

 Score =  138 bits (347), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 29  NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQL 88
           NLSL  N++G YQ+ K    P  I+++TL ++K FS  I+L+L+ + +GV + +  D++ 
Sbjct: 92  NLSLQNNTIGTYQLAKAMTTPVIIVIQTLCYKKTFSTKIRLTLIPITLGVILNSYYDVKF 151

Query: 89  NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLT 148
           N LG+V + L VL T + Q+     Q + +V+S QLLY   P  +  L +  PF + +  
Sbjct: 152 NFLGTVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFA 211

Query: 149 NKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYV 208
              +F   ++   L  ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GYV
Sbjct: 212 EGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYV 270

Query: 209 LLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 252
           L  DP S    LG+L  + G++ Y++   L  Q+ +     Q P
Sbjct: 271 LFKDPLSINQGLGMLCTLFGILAYTH-FKLSEQEGSKSKLVQRP 313

Putative transporter.

Bos taurus (taxid: 9913)

>sp|Q9C521|UGAL1_ARATH UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 13/281 (4%)

Query: 1   MKLFEHKPF---DP----RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL 53
           +K+ + KP    DP    R +     +  I+I L N+SL +  V F Q  K      T++
Sbjct: 58  IKVLKLKPLIVVDPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVV 117

Query: 54  LETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTI 113
           L+ L +RK F   I  SLV ++ G+ + +VT+L  N+ G   +L   L T    I+  ++
Sbjct: 118 LQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESL 177

Query: 114 QKKFKVSSTQLLYQSCPYQALTLFIIGPFLD--GLLTNKNVFAFKYTPYVLFFIVLSC-L 170
              +K  S   +Y   P+  + L I    L+  G+L+    F     P+    I+LS  +
Sbjct: 178 LHGYKFDSINTVYYMAPFATMILGIPALLLEGSGILS---WFEAHPAPWSALIIILSSGV 234

Query: 171 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMV 230
           ++  +NFS F VI  T+ VT+ V G+LK  + +   +++  +P S+ N +G  I ++G  
Sbjct: 235 LAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVMVSWLIFRNPISYMNAVGCGITLVGCT 294

Query: 231 LYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEKGTGD 271
            Y Y   + SQQ      +      + E  PL+N +K  G 
Sbjct: 295 FYGYVRHMLSQQTPGTPRTPRTPRSKMELLPLVNNDKLEGK 335

UDP-galactose transporter that transports UDP-galactose, UDP-glucose and GDP-fucose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE9|GONS5_ARATH GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 17/278 (6%)

Query: 1   MKLFEHKPF---DP----RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL 53
           +K+ + KP    DP    R +     +  I+I L N+SL +  V F Q  K      T++
Sbjct: 64  IKVLKLKPLIVVDPEDRWRRIFPMSFVFCINIVLGNISLRYIPVSFMQTIKSLTPATTVV 123

Query: 54  LETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTI 113
           L+ L +RK F   I  SLV ++ G+ + ++T+L  NV G   +L   L T    I+  ++
Sbjct: 124 LQWLVWRKYFDWRIWASLVPIVGGILLTSITELSFNVFGFCAALFGCLATSTKTILAESL 183

Query: 114 QKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN----VFAFKYTPYVLFFIVL-S 168
              +K  S   +Y   P+  +   I+G  L   L  +N     F    +P+    I+  S
Sbjct: 184 LHGYKFDSINTVYYMAPFATM---ILG--LPAFLLERNGILDWFEAHPSPWSALIILFNS 238

Query: 169 CLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIG 228
            +++  +NFS F VI  T+ VT+ V G+LK  + +   +++  +P S  N +G  I ++G
Sbjct: 239 GVLAFCLNFSIFYVIQSTTAVTFNVAGNLKVAVAVFVSWMIFRNPISPMNAVGCGITLVG 298

Query: 229 MVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAE 266
              Y Y   + SQQ+     +      + E  PL+N +
Sbjct: 299 CTFYGYVRHMLSQQQPGTPRTPRTPRNKMELIPLVNDK 336

GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6T0|PT525_ARATH Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 132/270 (48%), Gaps = 13/270 (4%)

Query: 12  RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL-LETLFFRKKFSRNIQLS 70
           R+V+  G L  +S+ L N +  + SV F QM K A++P  +  +  LF ++ F     ++
Sbjct: 87  RSVVPIGALYSLSLWLSNSAYIYLSVSFIQMLK-ALMPVAVYSIGVLFKKEGFKSETMMN 145

Query: 71  LVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTI--QKKFKVSSTQLLYQS 128
           ++ +  GV IA   + + +V G +L L AV       +M   +   K   ++    LY  
Sbjct: 146 MLSISFGVAIAAYGEARFDVWGVILQLGAVAFEATRLVMIQILLTSKGITLNPITSLYYV 205

Query: 129 CPYQALTLFIIGPFLD-GLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTS 187
            P     LFI    ++  +L + + F F Y   ++F     C  + ++N + FL++GKTS
Sbjct: 206 APCCLAFLFIPWIVVEFPILRDTSSFHFDY---LIFGTNSFC--AFALNLAVFLLVGKTS 260

Query: 188 PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASET 247
            +T  V G +K  L++AF + ++ D  +  N+ G  IA +G+  Y++      + K ++ 
Sbjct: 261 ALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLFGYGIAFLGVAYYNHAKLQALKAKEAQK 320

Query: 248 SSQLPQVKEGETDPLINAEKGTGDGVAKAP 277
           ++Q  QV E ET  L+   +G   G    P
Sbjct: 321 TAQ--QVDE-ETGRLLEEREGNEGGRKNEP 347

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFN3|PT511_ARATH Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 131/271 (48%), Gaps = 19/271 (7%)

Query: 12  RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL-LETLFFRKKFSRNIQLS 70
           R+V+  G L  +S+ L N +  + SV F QM K A++P  +  +  LF ++ F  +  ++
Sbjct: 87  RSVVPIGALYALSLWLSNSAYIYLSVSFIQMLK-ALMPVAVYSIGVLFKKEGFKSDTMMN 145

Query: 71  LVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTI--QKKFKVSSTQLLYQS 128
           ++ +  GV IA   + + +V G +L L AV       ++   +   K  K++    LY  
Sbjct: 146 MLSISFGVAIAAYGEARFDVWGVILQLGAVAFEATRLVLIQILLGDKGIKLNPITSLYYV 205

Query: 129 CPYQALTLFIIGPFLD-GLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTS 187
            P     LFI   +++  +L + + F   Y  +       +   + ++N + FL++GKTS
Sbjct: 206 APCCLAFLFIPWIYVEFPVLRDTSSFHLDYAIFGA-----NSFCAFALNLAVFLLVGKTS 260

Query: 188 PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC---------CSL 238
            +T  V G +K  L++AF + ++ D  +  N+ G  IA +G+  Y++             
Sbjct: 261 ALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLFGYGIAFLGVAYYNHAKLQALKAKEEEK 320

Query: 239 ESQQKASETSSQLPQVKEGETDPLINAEKGT 269
           +  Q+A E S +L + +EG+ +   N + G 
Sbjct: 321 KKIQQADEESGRLLEEREGDVEGKKNDQSGN 351

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
255554489	369	UDP-glucuronic acid/UDP-N-acetylgalactos	1.0	0.777	0.896	1e-147
118483005	353	unknown [Populus trichocarpa] gi|1184890	1.0	0.813	0.876	1e-143
224145447	353	predicted protein [Populus trichocarpa]	1.0	0.813	0.873	1e-143
22329373	357	nodulin MtN21 /EamA-like transporter pro	1.0	0.803	0.847	1e-141
297848964	357	hypothetical protein ARALYDRAFT_470711 [	1.0	0.803	0.847	1e-141
238479401	353	Nucleotide/sugar transporter family prot	1.0	0.813	0.839	1e-138
449439189	353	PREDICTED: uncharacterized membrane prot	1.0	0.813	0.856	1e-138
297826457	353	hypothetical protein ARALYDRAFT_320800 [	1.0	0.813	0.839	1e-137
334182354	353	nodulin MtN21 /EamA-like transporter pro	0.940	0.764	0.888	1e-136
116789298	352	unknown [Picea sitchensis]	1.0	0.815	0.824	1e-135

>gi|255554489|ref|XP_002518283.1| UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis] gi|223542503|gb|EEF44043.1| UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/291 (89%), Positives = 275/291 (94%), Gaps = 4/291 (1%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MK+FEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 79  MKMFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 138

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           KKFSRNIQ SL ILL+GVGIATVTDLQLNVLGSVLSLLAV+TTC+AQIMTNTIQKKFKVS
Sbjct: 139 KKFSRNIQFSLTILLLGVGIATVTDLQLNVLGSVLSLLAVVTTCIAQIMTNTIQKKFKVS 198

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA+TLFIIGPFLDGLLTN NVFAFKYTP VLFFIVLSCLISVSVNFSTF
Sbjct: 199 STQLLYQSCPYQAITLFIIGPFLDGLLTNLNVFAFKYTPQVLFFIVLSCLISVSVNFSTF 258

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPFSWRNILGILIAVIGMVLYSYCC++E+
Sbjct: 259 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILIAVIGMVLYSYCCTVEN 318

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGTG---DGVA-KAPAWNSNKDLHA 287
           QQKASETS +LP+VKEGE+DPLI  E G+G   DGV  KAP WNSNKDLHA
Sbjct: 319 QQKASETSVKLPEVKEGESDPLIGVENGSGILADGVVPKAPVWNSNKDLHA 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483005|gb|ABK93414.1| unknown [Populus trichocarpa] gi|118489025|gb|ABK96320.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/292 (87%), Positives = 272/292 (93%), Gaps = 5/292 (1%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MKLFEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 62  MKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           K+FSR+IQLSL ILL+GVGIATVTDLQLNVLGS+LSLLAVLTTCVAQIMTNTIQKKF+VS
Sbjct: 122 KQFSRSIQLSLTILLMGVGIATVTDLQLNVLGSILSLLAVLTTCVAQIMTNTIQKKFRVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQALTLFI+GPFLDGLLTNKNV AFKYTP VLFFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQALTLFIVGPFLDGLLTNKNVLAFKYTPLVLFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPFSWRNILGILIAV+GMVLYSYCC+LE+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILIAVVGMVLYSYCCTLEN 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAK-APAWNSNKDLHA 287
           QQK +E  ++LP+VKE ETDPLI+AE GTG     GV K  P WNSNKDL A
Sbjct: 302 QQKQNEAPAKLPEVKESETDPLISAENGTGILADGGVPKVVPLWNSNKDLDA 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145447|ref|XP_002325646.1| predicted protein [Populus trichocarpa] gi|222862521|gb|EEF00028.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/292 (87%), Positives = 271/292 (92%), Gaps = 5/292 (1%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MKLFEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 62  MKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           K+FSR+IQLSL ILL+GVGIATVTDLQLNVLGS+LSLLAVLTTCVAQIMTNTIQKKF+VS
Sbjct: 122 KQFSRSIQLSLTILLMGVGIATVTDLQLNVLGSILSLLAVLTTCVAQIMTNTIQKKFRVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQALTLFI+GPFLDGLLTNKNV AFKYTP VLFFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQALTLFIVGPFLDGLLTNKNVLAFKYTPLVLFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPFSWRNILGILIAV+GMVLYSYCC+LE+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILIAVVGMVLYSYCCTLEN 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGTG---DGVAK--APAWNSNKDLHA 287
           QQK +E  ++LP+VKE ETDPLI+AE GTG   DG      P WNSNKDL A
Sbjct: 302 QQKQNEAPAKLPEVKESETDPLISAENGTGILADGGVPNVVPLWNSNKDLDA 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329373|ref|NP_172172.2| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|145323764|ref|NP_001077471.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|75158873|sp|Q8RXL8.1|Y1689_ARATH RecName: Full=Uncharacterized membrane protein At1g06890 gi|19423946|gb|AAL87295.1| unknown protein [Arabidopsis thaliana] gi|21436373|gb|AAM51356.1| unknown protein [Arabidopsis thaliana] gi|332189927|gb|AEE28048.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|332189928|gb|AEE28049.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/296 (84%), Positives = 269/296 (90%), Gaps = 9/296 (3%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 62  MKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           KKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKVS
Sbjct: 122 KKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIET 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGT------GDGVAK---APAWNSNKDLHA 287
           QQKASETS+QLPQ+KE E DPLI AE G+      G GV +   AP WNSNKD  A
Sbjct: 302 QQKASETSTQLPQMKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848964|ref|XP_002892363.1| hypothetical protein ARALYDRAFT_470711 [Arabidopsis lyrata subsp. lyrata] gi|297338205|gb|EFH68622.1| hypothetical protein ARALYDRAFT_470711 [Arabidopsis lyrata subsp. lyrata]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/296 (84%), Positives = 269/296 (90%), Gaps = 9/296 (3%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 62  MKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           KKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKVS
Sbjct: 122 KKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIET 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGT------GDGVAK---APAWNSNKDLHA 287
           QQKASETS+QLPQ+KE E DPLI AE G+      G GV +   AP WNSNKD  A
Sbjct: 302 QQKASETSTQLPQMKESENDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479401|ref|NP_001154542.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana] gi|240254554|ref|NP_180604.4| Nucleotide/sugar transporter family protein [Arabidopsis thaliana] gi|27311731|gb|AAO00831.1| putative integral membrane protein [Arabidopsis thaliana] gi|30984584|gb|AAP42755.1| At2g30460 [Arabidopsis thaliana] gi|51970474|dbj|BAD43929.1| integral membrane protein -like [Arabidopsis thaliana] gi|51970498|dbj|BAD43941.1| integral membrane protein -like [Arabidopsis thaliana] gi|51970690|dbj|BAD44037.1| integral membrane protein -like [Arabidopsis thaliana] gi|62319792|dbj|BAD93797.1| integral membrane protein -like [Arabidopsis thaliana] gi|330253296|gb|AEC08390.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana] gi|330253297|gb|AEC08391.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/292 (83%), Positives = 268/292 (91%), Gaps = 5/292 (1%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MK FEHKPFDPRAV+GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT++LET+FFR
Sbjct: 62  MKFFEHKPFDPRAVLGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVVLETIFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           K FSR IQ SLVILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKK+KVS
Sbjct: 122 KMFSRKIQFSLVILLLGVGIATVTDLQLNMLGSVLSLLAVITTCVAQIMTNTIQKKYKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGY+LL D FSWRNILGIL+AVIGMVLYSY C+LE+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYLLLKDAFSWRNILGILVAVIGMVLYSYYCTLET 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAKA-PAWNSNKDLHA 287
           QQKA+ETS+QLPQ+ E E DPL++AE G+G    +GV K  P WNSNKD  A
Sbjct: 302 QQKATETSTQLPQMDENEKDPLVSAENGSGLISDNGVQKQDPVWNSNKDFQA 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439189|ref|XP_004137369.1| PREDICTED: uncharacterized membrane protein At1g06890-like [Cucumis sativus] gi|449519480|ref|XP_004166763.1| PREDICTED: uncharacterized membrane protein At1g06890-like [Cucumis sativus]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/292 (85%), Positives = 266/292 (91%), Gaps = 5/292 (1%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MKLFEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 62  MKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           K FS++IQ SL+ILL+GVGIATVTDLQLN LGS LSLLAVLTTCVAQIMTNTIQKKFKVS
Sbjct: 122 KMFSKSIQFSLMILLLGVGIATVTDLQLNALGSFLSLLAVLTTCVAQIMTNTIQKKFKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQALTLFI GPFLD  LT+ NVFAFKYTP VLFFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQALTLFIAGPFLDWCLTDLNVFAFKYTPQVLFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTS VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGIL+A++GMVLYSY C+LES
Sbjct: 242 LVIGKTSAVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILVAIVGMVLYSYYCTLES 301

Query: 241 QQKASETSS-QLPQVKEGETDPLINAEKGT---GDGVA-KAPAWNSNKDLHA 287
           QQK++E SS QL Q KE E+DPLI+ E G    GD V  KAPAW+SNKDLHA
Sbjct: 302 QQKSNEVSSAQLSQAKENESDPLISVENGAAILGDSVGPKAPAWSSNKDLHA 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826457|ref|XP_002881111.1| hypothetical protein ARALYDRAFT_320800 [Arabidopsis lyrata subsp. lyrata] gi|297326950|gb|EFH57370.1| hypothetical protein ARALYDRAFT_320800 [Arabidopsis lyrata subsp. lyrata]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/292 (83%), Positives = 268/292 (91%), Gaps = 5/292 (1%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MK FEH+PFDPRAV+GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT++LET+FFR
Sbjct: 62  MKFFEHQPFDPRAVLGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVVLETIFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           KKFSR IQ SLVILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKK+KVS
Sbjct: 122 KKFSRKIQFSLVILLLGVGIATVTDLQLNMLGSVLSLLAVITTCVAQIMTNTIQKKYKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGY+LL D FSWRNILGIL+AVIGMVLYSY C+LE+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYLLLKDAFSWRNILGILVAVIGMVLYSYYCTLET 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAKA-PAWNSNKDLHA 287
           QQKA+ETS+QLPQ+ E E DPLI+ E G+G    + V KA P WNSNKD  A
Sbjct: 302 QQKAAETSTQLPQMDENEKDPLISVENGSGLISDNVVPKADPVWNSNKDFQA 353

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182354|ref|NP_001184926.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|332189929|gb|AEE28050.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/270 (88%), Positives = 257/270 (95%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           MK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFFR
Sbjct: 62  MKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           KKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKVS
Sbjct: 122 KKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E+
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIET 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGTG 270
           QQKASETS+QLPQ+KE E DPLI AE G+G
Sbjct: 302 QQKASETSTQLPQMKESEKDPLIAAENGSG 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789298|gb|ABK25192.1| unknown [Picea sitchensis]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/291 (82%), Positives = 262/291 (90%), Gaps = 4/291 (1%)

Query: 1   MKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 60
           +KLFEHKPFD RAVMGFG+LNGISIGLLNL LGFNSVGFYQMTKLAIIPCT+LLETLFF+
Sbjct: 62  LKLFEHKPFDARAVMGFGILNGISIGLLNLCLGFNSVGFYQMTKLAIIPCTVLLETLFFK 121

Query: 61  KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVS 120
           K FSR IQ SLVILL+GVGIATVTDLQLN+LGSVLSLLA++TTCVAQIMTNTIQK+FKVS
Sbjct: 122 KDFSRKIQFSLVILLLGVGIATVTDLQLNLLGSVLSLLAIVTTCVAQIMTNTIQKRFKVS 181

Query: 121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
           STQLLYQSCPYQA TLFI GPF+DGLLTN+NVFAFKYTP+VL FIVLSCLISVSVNFSTF
Sbjct: 182 STQLLYQSCPYQATTLFITGPFVDGLLTNQNVFAFKYTPHVLIFIVLSCLISVSVNFSTF 241

Query: 181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
           LVIGKTSPVTYQVLGHLKTCLVLAFGY+LLHDPFSWRNILGILIA++GM LYSY C+++S
Sbjct: 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYILLHDPFSWRNILGILIAIVGMGLYSYFCAVDS 301

Query: 241 QQKASETSSQLPQVKEGETDPLINAEKGTGDGV----AKAPAWNSNKDLHA 287
           Q K SE  +QL QVK+GET+PLI  E G+  G      K P W SNKDLHA
Sbjct: 302 QSKQSEPPAQLSQVKDGETEPLIIIENGSNKGNDSVGPKGPIWASNKDLHA 352

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2033097	357	AT1G06890 [Arabidopsis thalian	1.0	0.803	0.709	1.1e-103
TAIR|locus:2064316	353	AT2G30460 "AT2G30460" [Arabido	1.0	0.813	0.688	3.8e-101
TAIR|locus:504955965	342	AT2G28315 [Arabidopsis thalian	0.919	0.771	0.561	4.3e-70
TAIR|locus:2030076	347	AT1G76670 [Arabidopsis thalian	0.766	0.634	0.35	1.7e-34
TAIR|locus:2199557	348	AT1G21070 [Arabidopsis thalian	0.783	0.646	0.340	3.6e-34
TAIR|locus:2162271	350	AT5G42420 [Arabidopsis thalian	0.801	0.657	0.319	9.5e-34
TAIR|locus:2118514	335	AT4G09810 [Arabidopsis thalian	0.770	0.659	0.367	5.2e-33
TAIR|locus:2122467	337	NST-K1 "nucleotide sugar trans	0.693	0.590	0.365	2.9e-32
TAIR|locus:2009076	335	AT1G34020 [Arabidopsis thalian	0.693	0.594	0.36	6.9e-31
ZFIN|ZDB-GENE-041210-186	317	slc35e3 "solute carrier family	0.735	0.665	0.309	8.4e-26

TAIR|locus:2033097 AT1G06890 [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 210/296 (70%), Positives = 224/296 (75%)

Query:     1 MKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFR 60
             MK+FEHKPFDPRAVMGF                     FYQMTKLAIIPCT+LLETLFFR
Sbjct:    62 MKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFR 121

Query:    61 KKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVS 120
             KKFSR IQ S          ATVTD                TTCVAQIMTNTIQKKFKVS
Sbjct:   122 KKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVS 181

Query:   121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
             STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct:   182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query:   181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
             LVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E+
Sbjct:   242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIET 301

Query:   241 QQKASETSSQLPQVKEGETDPLINAEKGTG---DG---VAK---APAWNSNKDLHA 287
             QQKASETS+QLPQ+KE E DPLI AE G+G   DG   V +   AP WNSNKD  A
Sbjct:   302 QQKASETSTQLPQMKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2064316 AT2G30460 "AT2G30460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 201/292 (68%), Positives = 221/292 (75%)

Query:     1 MKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFR 60
             MK FEHKPFDPRAV+GF                     FYQMTKLAIIPCT++LET+FFR
Sbjct:    62 MKFFEHKPFDPRAVLGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVVLETIFFR 121

Query:    61 KKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVS 120
             K FSR IQ S          ATVTD                TTCVAQIMTNTIQKK+KVS
Sbjct:   122 KMFSRKIQFSLVILLLGVGIATVTDLQLNMLGSVLSLLAVITTCVAQIMTNTIQKKYKVS 181

Query:   121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
             STQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFSTF
Sbjct:   182 STQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTF 241

Query:   181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
             LVIGKTSPVTYQVLGHLKTCLVLAFGY+LL D FSWRNILGIL+AVIGMVLYSY C+LE+
Sbjct:   242 LVIGKTSPVTYQVLGHLKTCLVLAFGYLLLKDAFSWRNILGILVAVIGMVLYSYYCTLET 301

Query:   241 QQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAKA-PAWNSNKDLHA 287
             QQKA+ETS+QLPQ+ E E DPL++AE G+G    +GV K  P WNSNKD  A
Sbjct:   302 QQKATETSTQLPQMDENEKDPLVSAENGSGLISDNGVQKQDPVWNSNKDFQA 353

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:504955965 AT2G28315 [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 150/267 (56%), Positives = 178/267 (66%)

Query:     1 MKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFR 60
             +  FE+KP D R V+ F                     FYQMTKLAIIP T+LLETLF  
Sbjct:    62 LNFFENKPIDMRTVVLFGLLNGISIGLLNLSLGFNSIGFYQMTKLAIIPFTVLLETLFLN 121

Query:    61 KKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVS 120
             KKFS+ I+ S          A++TD                TTCV QI+TNTIQK+  V+
Sbjct:   122 KKFSQKIKFSLFLLLVGVGIASITDLQLNFVGSVLSLLAIATTCVGQILTNTIQKRLNVT 181

Query:   121 STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 180
             STQLLYQS P+QA  LF+ GPF+D  LT+ NVF+F Y+P V+ FI LSCLI+VSVNFSTF
Sbjct:   182 STQLLYQSAPFQAAILFVSGPFVDKYLTSLNVFSFHYSPIVVGFITLSCLIAVSVNFSTF 241

Query:   181 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 240
             LVIGKTSPVTYQVLGHLKTCLVLAFGY LLHDPF+ RNI GILIAV+GM+LYSY CS+ S
Sbjct:   242 LVIGKTSPVTYQVLGHLKTCLVLAFGYTLLHDPFTPRNIAGILIAVLGMLLYSYFCSVAS 301

Query:   241 QQK-ASETSSQLPQVKEGETDPLINAE 266
             + K AS  S+ L   K+ +T PL+  E
Sbjct:   302 KSKQASSDSTFLG--KDRDTTPLLGQE 326

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2030076 AT1G76670 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 77/220 (35%), Positives = 124/220 (56%)

Query:    39 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXX 98
             FYQ++KL++IP   +LE +   K + + ++ S           TVTD             
Sbjct:   105 FYQISKLSMIPVVCVLEWILHSKHYCKEVKASVMVVVIGVGICTVTDVKVNAKGFICACT 164

Query:    99 XXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYT 158
                +T + QI   ++QKK+ V S +LL ++ P QA++L I GPF+D LL+ K +  ++ T
Sbjct:   165 AVFSTSLQQISIGSLQKKYSVGSFELLSKTAPIQAISLLICGPFVDYLLSGKFISTYQMT 224

Query:   159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN 218
                +F I+LSC ++V  N S +L IG+ S  ++QVLGH+KT  VL  G++L     +++N
Sbjct:   225 YGAIFCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKN 284

Query:   219 ILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGE 258
             I G+ IA++GMV+YS+   +E Q+ A  T      + E E
Sbjct:   285 IAGMAIAIVGMVIYSWAVDIEKQRNAKSTPHGKHSMTEDE 324

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005457 "GDP-fucose transmembrane transporter activity" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0015783 "GDP-fucose transport" evidence=IDA

GO:0015786 "UDP-glucose transport" evidence=IDA

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2199557 AT1G21070 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 78/229 (34%), Positives = 128/229 (55%)

Query:    39 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXX 98
             FYQ++KL++IP   ++E +   K +SR ++ S           TVTD             
Sbjct:   106 FYQISKLSMIPVVCVMEWVLHSKHYSREVKASVMVVVVGVGICTVTDVKVNAKGFICACT 165

Query:    99 XXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYT 158
                +T + QI   ++QKK+ + S +LL ++ P QA++L I GPF+D  L+ + +  +K T
Sbjct:   166 AVFSTSLQQISIGSLQKKYSIGSFELLSKTAPIQAISLLIFGPFVDYFLSGRFISTYKMT 225

Query:   159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN 218
                +  I+LSC ++V  N S +L IG+ S  ++QVLGH+KT  VL  G+++     +++N
Sbjct:   226 YSAMLCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLIFDSEMTFKN 285

Query:   219 ILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEK 267
             I G+++AV+GMV+YS+   LE Q+K    S  +P  K   T+  I   K
Sbjct:   286 IAGMVLAVVGMVIYSWAVELEKQRK----SKVIPHGKHSMTEDEIKLLK 330

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2162271 AT5G42420 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 77/241 (31%), Positives = 134/241 (55%)

Query:    39 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXX 98
             FYQ++KL++IP   ++E +   K++SR +++S           TVTD             
Sbjct:   106 FYQISKLSMIPVVCVMEWILHSKRYSREVKISVVVVVVGVGICTVTDVKVNAKGFICACV 165

Query:    99 XXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYT 158
                ++ + QI+  ++QKK+ + S +LL ++ P QA +L ++GP +D LL+ K +  +  +
Sbjct:   166 AIFSSSLQQILIGSLQKKYSIGSFELLSKTAPIQAFSLLVVGPLVDYLLSGKFIMKYNMS 225

Query:   159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN 218
                  FI+LSC ++V  N S +L IG+ S V++QV+GH+KT  +L  G++L     +++N
Sbjct:   226 SGCFLFILLSCGLAVFCNISQYLCIGRFSAVSFQVIGHMKTVCILTLGWLLFDSAMTFKN 285

Query:   219 ILGILIAVIGMVLYSYCCSLESQQ----------KASETSSQLPQVKEG-ETDPLINAEK 267
             + G+++A++GMV+YS+   LE Q           K S T  +   +KEG ET    + E 
Sbjct:   286 VAGMIVAIVGMVIYSWAMELEKQSIIAAKALNSVKHSLTEEEFELLKEGVETTQSKDVEL 345

Query:   268 G 268
             G
Sbjct:   346 G 346

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2118514 AT4G09810 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 82/223 (36%), Positives = 122/223 (54%)

Query:    39 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXX 98
             FYQ+ KL++IP + LLE +F + ++SR+ +LS           TVTD             
Sbjct:   103 FYQIAKLSMIPVSCLLEVVFDKIRYSRDTKLSIGLVLVGVGVCTVTDVSVNTKGFVAAFV 162

Query:    99 XXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYT 158
                +T + Q   + +Q+K+ +SS  LL  + P QA TL I+GPFLD  LT+K V  + Y 
Sbjct:   163 AVWSTALQQYYVHYLQRKYSLSSFNLLGHTAPAQAATLLIVGPFLDYWLTDKRVDMYDYN 222

Query:   159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-HDPFSWR 217
                + FI LSC I++  N S F+ IG+ + V++QVLGH+KT LVL  G+     D  +  
Sbjct:   223 SVSVMFITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLVMGFFFFDRDGLNLH 282

Query:   218 NILGILIAVIGMVLYSYCCSLES-QQKASETSSQLPQVKEGET 259
              ILG++IAV+GM+ Y    S    ++K + +     Q K G T
Sbjct:   283 VILGMIIAVLGMIWYGNASSKPGGKEKKNYSLPTTRQQKLGAT 325

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2122467 NST-K1 "nucleotide sugar transporter-KT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/200 (36%), Positives = 115/200 (57%)

Query:    39 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXX 98
             FYQ+ KL++IP + LLE +    ++SR+ +LS           TVTD             
Sbjct:   108 FYQIAKLSMIPVSCLLEVMLDNVRYSRDTKLSILLVLAGVAVCTVTDVSVNLNGFLAAAI 167

Query:    99 XXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYT 158
                +T + Q   + +Q+K+ + S  LL  + P QA +L ++GPFLD  LTN+ V A+ ++
Sbjct:   168 AVWSTALQQYYVHYLQRKYSLGSFNLLAHTAPVQAASLLLVGPFLDYWLTNQRVDAYNFS 227

Query:   159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-HDPFSWR 217
                LFF++LSC I+V  N S F+ IG+ + V++QVLGH+KT LVL  G+     +  + +
Sbjct:   228 FVSLFFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQ 287

Query:   218 NILGILIAVIGMVLYSYCCS 237
              +LG+LIA++GM+ Y    S
Sbjct:   288 VVLGMLIAILGMIWYGNASS 307

GO:0005886 "plasma membrane" evidence=ISM

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IDA

GO:0015780 "nucleotide-sugar transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2009076 AT1G34020 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 72/200 (36%), Positives = 112/200 (56%)

Query:    39 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXX 98
             FYQ+ KL++IP + LLE +F + ++SR+ +LS           TVTD             
Sbjct:   103 FYQIAKLSMIPVSCLLEMVFDKIRYSRDTKLSIGLVLVGVGVCTVTDVSVNTKGFVAAFV 162

Query:    99 XXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYT 158
                +T + Q   + +Q+K+ ++S  LL  + P QA TL ++GPFLD  LT K V  + Y 
Sbjct:   163 AVWSTALQQYYVHYLQRKYSLNSFNLLGHTAPAQAATLLVVGPFLDYWLTEKRVDMYDYN 222

Query:   159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-HDPFSWR 217
                + FI LSC I++  N S F+ IG+ + V++QVLGH+KT LVL  G+     +  +  
Sbjct:   223 LVSVLFITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLH 282

Query:   218 NILGILIAVIGMVLYSYCCS 237
              ++G++IAV+GM+ Y    S
Sbjct:   283 VVVGMIIAVLGMIWYGNASS 302

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

ZFIN|ZDB-GENE-041210-186 slc35e3 "solute carrier family 35, member E3" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 66/213 (30%), Positives = 105/213 (49%)

Query:    40 YQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXX 99
             YQ+ K+   P  I ++T+++RK FS  I+L+           +  D              
Sbjct:   107 YQLAKVMTTPVIIAIQTMYYRKTFSTKIKLTLVPITLGVILNSYYDVRFNLMGMIFATLG 166

Query:   100 XXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTP 159
                T + Q+     Q + +V+S QLLY   P  +  L ++ PF + L  +  +F   ++ 
Sbjct:   167 VLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAFLLVLVPFFEPLTGDGGIFG-PWSF 225

Query:   160 YVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI 219
               LF ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GYVL  DP S    
Sbjct:   226 LALFMVLLSGVIAFLVNLSIYWIIGNTSPVTYNMFGHFKFCITLLGGYVLFQDPLSLNQG 285

Query:   220 LGILIAVIGMVLYSYCCSLESQQKASETSSQLP 252
             LGIL  + G++ Y++   L  Q++     +Q P
Sbjct:   286 LGILCTLTGILAYTHF-KLAEQEEGKSRLTQRP 317

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RXL8	Y1689_ARATH	No assigned EC number	0.8479	1.0	0.8039	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	5e-33
PTZ00343	350	PTZ00343, PTZ00343, triose or hexose phosphate/pho	3e-09
TIGR00817	302	TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate	8e-09
pfam08449	303	pfam08449, UAA, UAA transporter family	2e-08
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	2e-06
COG5070	309	COG5070, VRG4, Nucleotide-sugar transporter [Carbo	7e-06
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	3e-05
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.001

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score =  118 bits (297), Expect = 5e-33
 Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 92  GSVLSLLAVLTTCVAQIMTNTIQKK---FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLT 148
           G +L+L A     +  I++  + KK    K++  +LLY   P   + L     F +G   
Sbjct: 1   GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKL 60

Query: 149 NKNV---FAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAF 205
            K +   F    T   +  ++LS +++   N S F ++G+TSP+T  V G +K  +V+  
Sbjct: 61  GKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVL 120

Query: 206 GYVLLHDPFSWRNILGILIAVIGMVLYSY 234
             ++  DP ++ NILG+ IA++G+VLYSY
Sbjct: 121 SVIIFGDPVTFLNILGLAIAILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 11/215 (5%)

Query: 30  LSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN 89
           +S+G  +V F  + K A    T LL  LF ++  +    LSL+ ++ GV +A+V +L   
Sbjct: 133 ISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFT 192

Query: 90  VLGSVLSLLAVLTT-----CVAQIMTNTIQKKFKVSSTQL-----LYQSCPYQALTLFII 139
            L    ++L+ L +        + M N  +    ++++ +     L  S     L LF  
Sbjct: 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFE 252

Query: 140 GPFLDGLLTNKNVFAFKYTPY-VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK 198
           G     + TN       YT   ++F I  S +     N   F  +GK + VT+ V   LK
Sbjct: 253 GKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLK 312

Query: 199 TCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233
             +++    ++     +    LG+ +A++G +LYS
Sbjct: 313 RVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347

Length = 350

>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 17/218 (7%)

Query: 29  NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQL 88
           N+SL   +V F    K      +++L   F  ++F   + LSL+ ++ GV +A+ T+L  
Sbjct: 83  NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSF 142

Query: 89  NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALT-LFIIGPFLDGLL 147
           N  G + ++++ +T     I +        +  T L      Y ++  LF++ P     +
Sbjct: 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLY----AYISIMSLFLLSPP--AFI 196

Query: 148 TNKNVFAFKYTPYVLFFIVLSCLISVSV----------NFSTFLVIGKTSPVTYQVLGHL 197
           T    F        +  + ++ + +VS+              F+++G+ SP+T+ V   +
Sbjct: 197 TEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCM 256

Query: 198 KTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235
           K  +V+    +      S + + G  IA+ G+ LYS  
Sbjct: 257 KRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 19  VLNGISIGLLNLSLGFNSVGFYQMTKLA-IIPCTILLETLFFRKKFSRNIQLSLVILLVG 77
               +S  L N +L + S   + + K   +IP  ++L  L + K++S    LS +++ +G
Sbjct: 72  ATFFLSSVLNNEALKYISYPTHVIFKSCKLIP-VMILGILIYGKRYSSLQYLSALLITLG 130

Query: 78  VGIATV---TDLQLNVLGSVLSLLAVLTTCVAQIM---TNTIQ----KKFKVSSTQLLYQ 127
           V I T+    D + + L +    + +     A +M   T   Q    KK+   S ++++ 
Sbjct: 131 VIIFTLASAKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKEMMFY 190

Query: 128 SCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTS 187
           S         +    +   L           P VLF+++L+ L      F  F +I +  
Sbjct: 191 SHLLSLPFFLLGLLDIRTGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQFFVFYLISEFG 250

Query: 188 PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235
            +T  ++  L+  + L    +L  +P + +  LG L+  +G+ LY+Y 
Sbjct: 251 ALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYL 298

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 39/202 (19%), Positives = 64/202 (31%), Gaps = 16/202 (7%)

Query: 40  YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA---TVTDLQLNVLGSVLS 96
            Q+T+L I   T L+           +   SL +L +GV I      +   L     V+ 
Sbjct: 28  KQVTQLKI-LSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVG 86

Query: 97  LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFL------DGLLTNK 150
           L AVL+  ++        +K       + +       L LF +          DG L + 
Sbjct: 87  LSAVLSALLSSGFAGVYFEKILKDGDTMFWSR--NLQLPLFGLFSTFSVLLWSDGTLISN 144

Query: 151 NVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL 210
             F   Y   V    +L+    + +      V+      T   +  L   L       L 
Sbjct: 145 FGFFIGYPTAVWIVGLLNVGGGLCIG----GVVRYADNTTKSFVTALSIILSTLASVRLF 200

Query: 211 HDPFSWRNILGILIAVIGMVLY 232
               S    LG ++  +   LY
Sbjct: 201 DAKISSTFYLGAILVFLATFLY 222

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 11/221 (4%)

Query: 31  SLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQ--- 87
           SL + +V  Y + K   I      E LFF  + +    LS +++++   +AT  D Q   
Sbjct: 88  SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA 147

Query: 88  -----LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPF 142
                LN     +    + +     IM   I+         + Y +    +L + +   F
Sbjct: 148 FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNL--LSLPILLSFSF 205

Query: 143 LDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLV 202
           L    +  N+ A   +   L  + +S L SV +++ +   +  TS  TY ++G L    +
Sbjct: 206 LFEDWSPGNL-ANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPI 264

Query: 203 LAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQK 243
              G V    P ++ +I  IL+  +   +Y+   S + Q +
Sbjct: 265 ALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305

Length = 309

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 8/223 (3%)

Query: 13  AVMGFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKFSRNIQLSL 71
            ++   +   +   LL L+L + S      +  L  +   +L   L   ++ S    L +
Sbjct: 72  LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGI 131

Query: 72  VILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPY 131
           ++ L GV +  +      +L  +  LLA+    +  + T  +++  ++    L       
Sbjct: 132 LLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLGPVTLAL----- 186

Query: 132 QALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTY 191
             L   ++   L  L       A   +   L  + L    +       +  +        
Sbjct: 187 --LLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLV 244

Query: 192 QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234
            +L  L+       G +LL +P S   +LG  + V+G++L S 
Sbjct: 245 ALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 133 ALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSV-NFSTFLVIGKTSPVTY 191
           A    I G  L  LL          +   +  ++   L   ++     F  +   S    
Sbjct: 24  AYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASNA 83

Query: 192 QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234
            V+  L     L    +LL +  + + +LGI++ ++G++L   
Sbjct: 84  SVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.96
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.95
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.95
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.95
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.92
PRK11689	295	aromatic amino acid exporter; Provisional	99.92
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.92
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.92
PRK15430	296	putative chloramphenical resistance permease RarD;	99.9
PRK11272	292	putative DMT superfamily transporter inner membran	99.9
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.89
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.87
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.85
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.84
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.83
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.81
KOG1580	337	consensus UDP-galactose transporter related protei	99.81
KOG2765	416	consensus Predicted membrane protein [Function unk	99.8
KOG1581	327	consensus UDP-galactose transporter related protei	99.79
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.79
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.78
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.77
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.74
COG2962	293	RarD Predicted permeases [General function predict	99.74
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.73
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.73
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.73
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.73
KOG1582	367	consensus UDP-galactose transporter related protei	99.72
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.68
KOG2766	336	consensus Predicted membrane protein [Function unk	99.65
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.4
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.19
COG2510	140	Predicted membrane protein [Function unknown]	99.17
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.11
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.01
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.98
PRK15430	296	putative chloramphenical resistance permease RarD;	98.94
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.89
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.79
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.79
PLN00411	358	nodulin MtN21 family protein; Provisional	98.71
COG2510	140	Predicted membrane protein [Function unknown]	98.56
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.52
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.5
PRK11689	295	aromatic amino acid exporter; Provisional	98.43
COG2962	293	RarD Predicted permeases [General function predict	98.4
PRK11272	292	putative DMT superfamily transporter inner membran	98.39
PRK13499	345	rhamnose-proton symporter; Provisional	98.38
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.34
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.3
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.3
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.28
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.23
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.15
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.03
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.92
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.9
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.87
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.84
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.82
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.81
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.79
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.78
COG2076	106	EmrE Membrane transporters of cations and cationic	97.63
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.62
PRK11431	105	multidrug efflux system protein; Provisional	97.61
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.58
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.45
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.39
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.33
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.21
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.1
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.07
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.05
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.98
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.91
PRK13499	345	rhamnose-proton symporter; Provisional	96.86
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.82
PRK11431	105	multidrug efflux system protein; Provisional	96.81
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.76
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.76
COG2076	106	EmrE Membrane transporters of cations and cationic	96.73
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.62
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.26
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.25
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.62
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.41
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.97
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.62
KOG1580	337	consensus UDP-galactose transporter related protei	93.81
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	93.75
KOG2765	416	consensus Predicted membrane protein [Function unk	91.99
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	91.01
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	90.77
KOG1581	327	consensus UDP-galactose transporter related protei	90.49
PRK02237	109	hypothetical protein; Provisional	89.24
PF03348	429	Serinc: Serine incorporator (Serinc); InterPro: IP	86.8
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	86.69
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	86.45
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	84.74
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	83.92
KOG2922	335	consensus Uncharacterized conserved protein [Funct	83.68
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	83.63

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=5.3e-30  Score=225.88  Aligned_cols=228  Identities=18%  Similarity=0.228  Sum_probs=187.1

Q ss_pred             CchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccc
Q 023136           10 DPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN   89 (287)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~   89 (287)
                      +++++++.|++++.+..+.|.+++|++++.++++++++|+++++++++++|||++++++.+++++++|+.+...++.+.+
T Consensus        64 ~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~  143 (302)
T TIGR00817        64 LLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFN  143 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCccccc
Confidence            45778889999999999999999999999999999999999999999999999999999999999999998766666677


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccc-ccc--ccch-hHHHHH
Q 023136           90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNV-FAF--KYTP-YVLFFI  165 (287)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~  165 (287)
                      ..|++++++++++|+++.++.||..++.+.++.++..|++..+.+.+++.....++....... ...  .... ..+...
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            889999999999999999999998874456999999999999998888776655432111100 000  0111 122223


Q ss_pred             HHHHH-HHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          166 VLSCL-ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       166 ~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      +..+. .....+...+..+++++|.++++..+++|++++++|++++||++++.+++|.+++++|+.+|++.|.
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~  296 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA  296 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            33333 2333455667789999999999999999999999999999999999999999999999999987543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.96  E-value=4.8e-28  Score=216.95  Aligned_cols=226  Identities=21%  Similarity=0.274  Sum_probs=191.7

Q ss_pred             CchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccc
Q 023136           10 DPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN   89 (287)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~   89 (287)
                      ++++++|.|+++.......+.|+++++++++++++++.|+++++++++++|||++++++++++++++|+++++.+|.+.+
T Consensus       113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~  192 (350)
T PTZ00343        113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFT  192 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhH
Confidence            35678999999987788888999999999999999999999999999999999999999999999999999988888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCHHHHHHHHhHHHHHHHHHHHHhhcccc--CCc----cccccccc
Q 023136           90 VLGSVLSLLAVLTTCVAQIMTNTIQKKF-----KVSSTQLLYQSCPYQALTLFIIGPFLDGLL--TNK----NVFAFKYT  158 (287)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~----~~~~~~~~  158 (287)
                      ..|++++++|++++++++++.|+.+++.     +.++.+...+..+.+.+.+++..+..|...  ...    ........
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            8999999999999999999999998753     256777777778888888888776554321  000    00011111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      ...+..++.+++..+.+|...+..+++++|.++++.++++|++++++|++++||++++.+++|.++++.|+++|++.
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            23445566677777788888899999999999999999999999999999999999999999999999999999864

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.95  E-value=4.1e-28  Score=210.30  Aligned_cols=237  Identities=30%  Similarity=0.512  Sum_probs=205.8

Q ss_pred             ccCCCCC----CCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhh
Q 023136            2 KLFEHKP----FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVG   77 (287)
Q Consensus         2 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G   77 (287)
                      |+.++++    .+++.++|+++.++++..+.|.++.|++++++++++.++|+++.++++++.+|++++..+++++.++.|
T Consensus        70 ~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~G  149 (316)
T KOG1441|consen   70 KLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFG  149 (316)
T ss_pred             cCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeee
Confidence            4555555    568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeeecCCccchHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCHHHHHHHHhHHHHHHHH-HHHHhhccccCCccccc
Q 023136           78 VGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQK--KFKVSSTQLLYQSCPYQALTLF-IIGPFLDGLLTNKNVFA  154 (287)
Q Consensus        78 ~~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~  154 (287)
                      +.+...+|.+++..|.+.++++.+..++++++.++..+  ++++|+.+++.|+.+++...++ +.....++... .....
T Consensus       150 V~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~  228 (316)
T KOG1441|consen  150 VAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLT  228 (316)
T ss_pred             EEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeec
Confidence            99999999999999999999999999999999999994  6788999999999999998888 44333332211 00011


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      ..++...+. .++..++++.+|...|..+.++||++.++.+.+|.++.++.|+++|+++.++.+.+|.++.++|+.+|++
T Consensus       229 ~~~~~~~~~-~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  229 APWFVTFLI-LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             cccchhhHH-HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            233334443 4444499999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcchh
Q 023136          235 CCSLES  240 (287)
Q Consensus       235 ~~~~~~  240 (287)
                      .|.+++
T Consensus       308 ~k~~~~  313 (316)
T KOG1441|consen  308 AKLKEK  313 (316)
T ss_pred             Hhhhhh
Confidence            766553

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.95  E-value=7.7e-27  Score=204.81  Aligned_cols=231  Identities=20%  Similarity=0.256  Sum_probs=192.4

Q ss_pred             cCCCCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136            3 LFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT   82 (287)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~   82 (287)
                      +.+..+.+|.+++.+++++..+.++.+.|++|++.+.++++.++..+++++++++++|+|+++.|++|++++++|+.++.
T Consensus        71 ~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   71 WLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             chhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            33445677888999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ecCC---------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccc
Q 023136           83 VTDL---------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVF  153 (287)
Q Consensus        83 ~~~~---------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  153 (287)
                      ..|.         +....|++++++++++||+++++.|+..++.  ++.+...+..+++.++..+...+.|..    ...
T Consensus       151 ~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~ile~~----~i~  224 (334)
T PF06027_consen  151 VSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAILERS----GIE  224 (334)
T ss_pred             eecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHheehh----hhh
Confidence            6431         2347899999999999999999999999964  889999999999998887776666532    122


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          154 AFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      ...|+...+.+++..++.-+..+...-..++..+|+...+-.....+.+++++++++|+++++..++|.++|++|.++|+
T Consensus       225 ~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  225 SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN  304 (334)
T ss_pred             ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence            33455555555555555444445555556899999988888888899999999999999999999999999999999998


Q ss_pred             Hhhcch
Q 023136          234 YCCSLE  239 (287)
Q Consensus       234 ~~~~~~  239 (287)
                      ..+.+.
T Consensus       305 ~~~~~~  310 (334)
T PF06027_consen  305 LAESPE  310 (334)
T ss_pred             ccCCcc
Confidence            765433

Some of the sequences in this family are annotated as putative membrane proteins.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=9.6e-26  Score=201.65  Aligned_cols=219  Identities=13%  Similarity=0.236  Sum_probs=165.2

Q ss_pred             HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHh------cceecchhhHHHHHHHhhhheeeeec-CC---
Q 023136           17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF------FRKKFSRNIQLSLVILLVGVGIATVT-DL---   86 (287)
Q Consensus        17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~------~~e~~~~~~~~~~~l~~~G~~l~~~~-~~---   86 (287)
                      .+++......+.+.+++|++++.+.++.+++|++++++++++      +|||+++++++|++++++|+.++... +.   
T Consensus        84 ~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~  163 (358)
T PLN00411         84 LGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVF  163 (358)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccc
Confidence            344444455678899999999999999999999999999999      69999999999999999999976531 10   


Q ss_pred             --------------------ccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhcc
Q 023136           87 --------------------QLN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG  145 (287)
Q Consensus        87 --------------------~~~-~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  145 (287)
                                          ..+ ..|.++.++++++||+|++++|+..++++ +.....+++..++.+.+.+.....+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        164 VASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             cccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence                                112 45999999999999999999999988652 33456667766666655554444432


Q ss_pred             ccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 023136          146 LLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA  225 (287)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~li  225 (287)
                      ...  ......++...+. ++..++........+++++++.+|.+++++.+++|++++++|++++||++++.+++|+++|
T Consensus       243 ~~~--~~~~~~~~~~~~~-i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI  319 (358)
T PLN00411        243 NNP--SVWIIHFDITLIT-IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILI  319 (358)
T ss_pred             CCc--ccceeccchHHHH-HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            111  0111122222222 3333333434556677789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcch
Q 023136          226 VIGMVLYSYCCSLE  239 (287)
Q Consensus       226 l~g~~~~~~~~~~~  239 (287)
                      ++|+.+.++.++++
T Consensus       320 l~Gv~l~~~~~~~~  333 (358)
T PLN00411        320 TLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHHhhhhhh
Confidence            99999987654433

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.95  E-value=1.2e-25  Score=198.01  Aligned_cols=233  Identities=22%  Similarity=0.322  Sum_probs=201.8

Q ss_pred             CCCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec
Q 023136            5 EHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT   84 (287)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~   84 (287)
                      ++++.|++++++.++++.++..+.|.+++|+|.+..++++++.|+++++++.+++|||++++++++++++++|+++....
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~  137 (303)
T PF08449_consen   58 KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS  137 (303)
T ss_pred             CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             CCc----c------chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHh--hccccCCccc
Q 023136           85 DLQ----L------NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPF--LDGLLTNKNV  152 (287)
Q Consensus        85 ~~~----~------~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~  152 (287)
                      |..    .      ...|+++.+++.++.|+..+++||..++++.++.++++|.+.++.+..++....  .+...+....
T Consensus       138 ~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f  217 (303)
T PF08449_consen  138 DSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF  217 (303)
T ss_pred             ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Confidence            421    1      123999999999999999999999999999999999999999999888777666  2222111111


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136          153 FAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  232 (287)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~  232 (287)
                        ....+..+..++..++.++..+...+..+++.+|++.++..++|.++++++|+++||+++++.+++|.++++.|..+|
T Consensus       218 --~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  218 --ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             --HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence              112334666777888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcch
Q 023136          233 SYCCSLE  239 (287)
Q Consensus       233 ~~~~~~~  239 (287)
                      .+.++++
T Consensus       296 ~~~~~k~  302 (303)
T PF08449_consen  296 SYAKKKK  302 (303)
T ss_pred             HHhhccC
Confidence            9876644

; GO: 0055085 transmembrane transport

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.3e-24  Score=183.21  Aligned_cols=242  Identities=24%  Similarity=0.326  Sum_probs=213.1

Q ss_pred             CccCCCCCCCc---hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhh
Q 023136            1 MKLFEHKPFDP---RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVG   77 (287)
Q Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G   77 (287)
                      +|+++.+++++   |+|+|.++++.++.+....+++|++++.++++++..|+++++.+.+++|.|+++..|.++..+.+|
T Consensus        64 ~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~  143 (314)
T KOG1444|consen   64 LGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIG  143 (314)
T ss_pred             hceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHH
Confidence            57888887775   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeeecCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccccccc
Q 023136           78 VGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKY  157 (287)
Q Consensus        78 ~~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  157 (287)
                      ......+|..++..|+.|++...++.+.+.++.|+..+..+.+.+.+++|+++.+.+.+.+...+.+.+.......+-..
T Consensus       144 s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~  223 (314)
T KOG1444|consen  144 SVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS  223 (314)
T ss_pred             HHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc
Confidence            99999999999999999999999999999999999998777899999999999999888887777665431111112233


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          158 TPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      +...+..+.++|+++++.+++.+++.+..|+++.++++......+.+...+++|+++++..++|..+-+.|.++|++.+.
T Consensus       224 ~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~  303 (314)
T KOG1444|consen  224 DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATF  303 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence            45678899999999999999999999999999999999666666666666677779999999999999999999999877


Q ss_pred             chhhh
Q 023136          238 LESQQ  242 (287)
Q Consensus       238 ~~~~~  242 (287)
                      ++++.
T Consensus       304 ~~k~~  308 (314)
T KOG1444|consen  304 RKKKQ  308 (314)
T ss_pred             hhccC
Confidence            66443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.92  E-value=2.1e-23  Score=183.18  Aligned_cols=214  Identities=19%  Similarity=0.118  Sum_probs=159.2

Q ss_pred             chhHHHHHHHHHHHHhhhccccc----ccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC
Q 023136           11 PRAVMGFGVLNGISIGLLNLSLG----FNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL   86 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~al~----~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~   86 (287)
                      ++..+..++.+.....+.+.+++    +.++..+.++.++.|+++.+++++++|||++++++++++++++|+.++..++.
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~  140 (295)
T PRK11689         61 KRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN  140 (295)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc
Confidence            33344445555566667776665    46778889999999999999999999999999999999999999998875432


Q ss_pred             c-----------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccccc
Q 023136           87 Q-----------LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAF  155 (287)
Q Consensus        87 ~-----------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  155 (287)
                      +           .+..|++++++++++||.+.++.||..++.  ++.....   ..+.+.+.+.....+..     .  .
T Consensus       141 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~~-----~--~  208 (295)
T PRK11689        141 GLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLFF---ILTALALWIKYFLSPQP-----A--M  208 (295)
T ss_pred             cchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHHH---HHHHHHHHHHHHHhcCc-----c--c
Confidence            1           234699999999999999999999987643  5554422   22233332222221111     1  1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          156 KYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      ..+...+..++..++.+...++..++.+++.+|.+.+.+.+++|+++++++++++||++++.+++|+++|+.|+.+....
T Consensus       209 ~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        209 VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            12233344444455555555777778899999999999999999999999999999999999999999999999887654


Q ss_pred             h
Q 023136          236 C  236 (287)
Q Consensus       236 ~  236 (287)
                      +
T Consensus       289 ~  289 (295)
T PRK11689        289 T  289 (295)
T ss_pred             H
Confidence            3

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.92  E-value=3.1e-23  Score=182.52  Aligned_cols=230  Identities=16%  Similarity=0.226  Sum_probs=166.4

Q ss_pred             CCCCchhHHHHHHHHH-HHHhhhcccccc-cchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec
Q 023136            7 KPFDPRAVMGFGVLNG-ISIGLLNLSLGF-NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT   84 (287)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~~~~al~~-~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~   84 (287)
                      ++.+++..+..+++.. ....+.+.+++| .+++.+.++.++.|+++.+++++++|||++++++++++++++|+.++..+
T Consensus        54 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         54 PKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            4445555555566433 444566778887 68899999999999999999999999999999999999999999988754


Q ss_pred             C---CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136           85 D---LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFK-VSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY  160 (287)
Q Consensus        85 ~---~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (287)
                      +   .+.+..|+++++.++++|+.+.++.||..++.+ ........+....+.+.+.......++..... .....++..
T Consensus       134 ~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  212 (299)
T PRK11453        134 SLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMT  212 (299)
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHH
Confidence            2   223457999999999999999999999876432 22334445554444443333333333211100 000123334


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          161 VLFFIVLSCLISVSVNF-STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      .+..++..++++....+ ..++.+++.++.+.+.+.+++|+++.+++++++||++++.+++|++++++|+.+..+.++
T Consensus       213 ~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        213 TILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            45555555555554444 444568999999999999999999999999999999999999999999999998766543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.92  E-value=4.7e-23  Score=177.67  Aligned_cols=212  Identities=17%  Similarity=0.126  Sum_probs=166.8

Q ss_pred             CchhHHHHHH-HHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC-Cc
Q 023136           10 DPRAVMGFGV-LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-LQ   87 (287)
Q Consensus        10 ~~~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~-~~   87 (287)
                      ++++.+..+. ...++..+.+.|++|++++.++++.++.|+++++++.+++|||++++++.+++++++|+.++..++ .+
T Consensus        45 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~  124 (260)
T TIGR00950        45 RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLS  124 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCccc
Confidence            3344445544 467888999999999999999999999999999999999999999999999999999999876543 44


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136           88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  167 (287)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (287)
                      .+..|++++++++++|+.+.++.|+..++.+.++.....+....+.+++.+.....++..      .  .+...+...+.
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~--~~~~~~~~~~~  196 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP------Q--ALSLQWGALLY  196 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC------C--cchHHHHHHHH
Confidence            567899999999999999999999998865434555555666677766665544332111      1  12223333444


Q ss_pred             HHHHHH-HHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHH
Q 023136          168 SCLISV-SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGM  229 (287)
Q Consensus       168 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~  229 (287)
                      .++++. ..+...++++++.++.+.+.+.+++|+++.+++++++||++++.+++|..+++.|+
T Consensus       197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       197 LGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            444433 34556677799999999999999999999999999999999999999999999986

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.90  E-value=2.1e-22  Score=176.99  Aligned_cols=209  Identities=11%  Similarity=0.104  Sum_probs=155.4

Q ss_pred             HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchHHHHHHH
Q 023136           18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSL   97 (287)
Q Consensus        18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~l~l   97 (287)
                      ++..+.++.+.+.++++++++.+.++.++.|+++++++++++|||+++++|++++++++|+.++..++.+.    ..+++
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l  155 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIAL  155 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHH
Confidence            45567889999999999999999999999999999999999999999999999999999999876433222    24688


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHH
Q 023136           98 LAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNF  177 (287)
Q Consensus        98 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (287)
                      +++++||.|.++.|+..++...+......|..+.+.+....   .....   ...... .....+...+..++.+...+.
T Consensus       156 ~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~-~~~~~~~~~~~~g~~t~i~~~  228 (296)
T PRK15430        156 GLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA---IADSS---TSHMGQ-NPMSLNLLLIAAGIVTTVPLL  228 (296)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH---HccCC---cccccC-CcHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999875432223333334444343333211   11100   000111 111122333334444555577


Q ss_pred             HHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          178 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       178 ~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      +.+..+++.+|.+.+.+.+++|+++.+++++++||++++.+++|+++|++|+.+......
T Consensus       229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~  288 (296)
T PRK15430        229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI  288 (296)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999999999999999988775543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.90  E-value=5.6e-22  Score=173.93  Aligned_cols=214  Identities=14%  Similarity=0.111  Sum_probs=162.4

Q ss_pred             HHHHHHHH-HHHHhhhcccc-cccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec-CCccch
Q 023136           14 VMGFGVLN-GISIGLLNLSL-GFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT-DLQLNV   90 (287)
Q Consensus        14 ~~~~~~~~-~~~~~~~~~al-~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~-~~~~~~   90 (287)
                      ....+.+. ..+..+.+.+. ++++++.+.++.++.|+++++++.+ +|||+++++++|++++++|+.++..+ +.+.+.
T Consensus        71 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~  149 (292)
T PRK11272         71 AALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNP  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccch
Confidence            33345443 35567778888 9999999999999999999999985 69999999999999999999987643 334456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136           91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  170 (287)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (287)
                      .|++++++++++||.+.+..||..++   ++.....++...+.+.+.+.....+....      ...+...+..++..++
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~l~i  220 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT------ALPTLSGFLALGYLAV  220 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc------ccCCHHHHHHHHHHHH
Confidence            79999999999999999999997653   23445567777777666555443321110      1112223333344444


Q ss_pred             HHH-HHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          171 ISV-SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      ++. ......+..+++.++.+.+++.+++|+++.+++++++||++++.+++|+++++.|+++.++.++
T Consensus       221 ~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        221 FGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            433 3345666779999999999999999999999999999999999999999999999998876433

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.89  E-value=3.7e-21  Score=168.84  Aligned_cols=209  Identities=13%  Similarity=0.136  Sum_probs=155.3

Q ss_pred             chhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec--C-Cc
Q 023136           11 PRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT--D-LQ   87 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~--~-~~   87 (287)
                      +++.+..+.+.+....+.+++++|+|++.++++.++.|+++++++.    ||+++  +.++.++++|+.++...  + .+
T Consensus        71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~~  144 (293)
T PRK10532         71 RLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVSH  144 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCccc
Confidence            3445566777788888889999999999999999999999998763    55554  44567788999876632  2 23


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136           88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  167 (287)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (287)
                      .+..|++++++++++|+.+.++.||..+++  ++... .+....+.+++.+.....+.        ...++...+...+.
T Consensus       145 ~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~l~  213 (293)
T PRK10532        145 VDLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAG--------EALWHWSILPLGLA  213 (293)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccC--------cccCCHHHHHHHHH
Confidence            356799999999999999999999997744  66655 45555566555544432221        01122222323334


Q ss_pred             HHHHHHHH-HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136          168 SCLISVSV-NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  236 (287)
Q Consensus       168 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~  236 (287)
                      .++++... ....++.+++.++.+++++.+++|+++.++|++++||++++.+++|+++++.|++.+.+..
T Consensus       214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            44444333 4455677999999999999999999999999999999999999999999999999987543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.87  E-value=2.7e-21  Score=168.77  Aligned_cols=206  Identities=16%  Similarity=0.157  Sum_probs=151.5

Q ss_pred             HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC-ccchHHHHHH
Q 023136           18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-QLNVLGSVLS   96 (287)
Q Consensus        18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~-~~~~~G~~l~   96 (287)
                      ++....+..+.+.++++.+++.+..+.++.|+++++++++++|||+++++|+|+.++++|+.++..++. +.+..|+.++
T Consensus        70 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~  149 (281)
T TIGR03340        70 AVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWA  149 (281)
T ss_pred             HHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            445668888999999999999999999999999999999999999999999999999999997765332 3455788899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHH----HHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136           97 LLAVLTTCVAQIMTNTIQKKFKVSSTQ----LLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  172 (287)
Q Consensus        97 l~s~~~~a~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (287)
                      +.++++|+.|.+..|+..++.  ++..    ...+......+.+.+.....+..    ...  ..+...+......++.+
T Consensus       150 l~aal~~a~~~i~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~s  221 (281)
T TIGR03340       150 LAAALGTAIYSLSDKAAALGV--PAFYSALGYLGIGFLAMGWPFLLLYLKRHGR----SMF--PYARQILPSATLGGLMI  221 (281)
T ss_pred             HHHHHHHHHhhhhccccccch--hcccccHHHHHHHHHHHHHHHHHHHHHHhcc----chh--hhHHHHHHHHHHHHHHH
Confidence            999999999999888865432  2221    22222111111111111111110    000  11122233344444444


Q ss_pred             HHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 023136          173 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL  231 (287)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~  231 (287)
                      ...+...+..+++.++...+...+++|+++.++|++++||+++..+++|++++++|+.+
T Consensus       222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            44566777789999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.85  E-value=1.6e-20  Score=157.85  Aligned_cols=221  Identities=25%  Similarity=0.407  Sum_probs=196.4

Q ss_pred             hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchH
Q 023136           12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVL   91 (287)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~   91 (287)
                      |+..|.++..+...++.|.+++|++.+.+++.+++.++|+.+++.++.=||+++.-..-++++.+|+.+.+..+.+++..
T Consensus        85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~  164 (349)
T KOG1443|consen   85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE  164 (349)
T ss_pred             HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence            45559999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHhHHHHHHHHHHHHhhccccCC--ccccc-ccc--chhHHH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKKFK---VSSTQLLYQSCPYQALTLFIIGPFLDGLLTN--KNVFA-FKY--TPYVLF  163 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~-~~~--~~~~~~  163 (287)
                      |..+..+++++.++...+.|+++++.+   -+|.+++++..+...+.+++.....|+....  ...+. ...  ....+.
T Consensus       165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g  244 (349)
T KOG1443|consen  165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG  244 (349)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence            999999999999999999999998644   3899999999999999999988888874322  11111 111  234556


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136          164 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  232 (287)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~  232 (287)
                      .+..++..++.+...-+..+.+++..+.++.+-.+-+.+.+++.++.+|+++..++.|..+...|+..+
T Consensus       245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            777888888888999999999999999999999999999999999999999999999999999999998

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.5e-22  Score=165.21  Aligned_cols=233  Identities=18%  Similarity=0.205  Sum_probs=206.7

Q ss_pred             chhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC---Cc
Q 023136           11 PRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQ   87 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~---~~   87 (287)
                      -++++|+++.+.++..+.|++++|++++++.+=+++.-+|+++++++++|+|-+..-..+.++++.|..+=...|   ..
T Consensus       102 ~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~  181 (347)
T KOG1442|consen  102 ARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGT  181 (347)
T ss_pred             HHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCc
Confidence            388999999999999999999999999999999999999999999999999999999999999999998777644   34


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136           88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  167 (287)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (287)
                      ..+.|.++++.++++-|+..++.|+...+.+-.-+.+.+|+++.+.+..++...+.+ ..+....++..+...+|....+
T Consensus       182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng-e~~~v~~~~~l~a~~Fw~~mtL  260 (347)
T KOG1442|consen  182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG-EFQAVVGFPHLPAIKFWILMTL  260 (347)
T ss_pred             cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc-hHHHHcCcccchHHHHHHHHHH
Confidence            578999999999999999999999888766667889999999999888777655543 2232333445667789999999


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhcchhhhcc
Q 023136          168 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKA  244 (287)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~~~~~~~~  244 (287)
                      +++.++.+++...+.++.+||+++.+-++-+.....+++..+++|.-+..-|-+-+++++|...|++.|.++.+++.
T Consensus       261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~  337 (347)
T KOG1442|consen  261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS  337 (347)
T ss_pred             HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877765544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.83  E-value=5.3e-20  Score=148.15  Aligned_cols=239  Identities=18%  Similarity=0.231  Sum_probs=209.5

Q ss_pred             ccCCCCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136            2 KLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA   81 (287)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~   81 (287)
                      |+++.+..+.|+|+|.+++.....+....+++|++++.+++++++.++.++....+++|.|.+-....+.++++..-...
T Consensus        59 ~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va  138 (309)
T COG5070          59 RLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVA  138 (309)
T ss_pred             hHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHh
Confidence            56677777789999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eecCCccc-------hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccc
Q 023136           82 TVTDLQLN-------VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFA  154 (287)
Q Consensus        82 ~~~~~~~~-------~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  154 (287)
                      .++|.+..       -.|++|.+..++..+.+....|+..+-.+....+.++|+++.+..+++.+....|.|.+..-...
T Consensus       139 ~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~ann  218 (309)
T COG5070         139 TWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN  218 (309)
T ss_pred             ccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC
Confidence            88776321       25999999999999999999999887555677889999999999999999998887755432222


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                        .....+...+++++.+++..++.-|+++.+++++.++.+.+......+.|.++|||+.+...+..+.+-..+..+|..
T Consensus       219 --l~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav  296 (309)
T COG5070         219 --LSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV  296 (309)
T ss_pred             --CChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence              223346678899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcchhhh
Q 023136          235 CCSLESQQ  242 (287)
Q Consensus       235 ~~~~~~~~  242 (287)
                      .+.+++++
T Consensus       297 aks~k~q~  304 (309)
T COG5070         297 AKSKKQQN  304 (309)
T ss_pred             HHHHHHhc
Confidence            77654443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.81  E-value=1.1e-17  Score=145.84  Aligned_cols=207  Identities=19%  Similarity=0.225  Sum_probs=160.8

Q ss_pred             HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHH-HhcceecchhhHHHHHHHhhhheeeeecCCccc---hHH
Q 023136           17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLET-LFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN---VLG   92 (287)
Q Consensus        17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~-l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~---~~G   92 (287)
                      .++.+.....+.+.++++++++.++++.++.|+++.++++ +++|||++++++.++.++++|+.++..++...+   ..|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g  155 (292)
T COG0697          76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLG  155 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHH
Confidence            3555678889999999999999999999999999999997 777999999999999999999999988665443   589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH-HHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLY-QSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      +.+++.++++++.+.+..|+.. +  .++..... +...  ...++..........       .......+......+++
T Consensus       156 ~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~  223 (292)
T COG0697         156 LLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLL--LALLLLLLFFLSGFG-------APILSRAWLLLLYLGVF  223 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHH--HHHHHHHHHHhcccc-------ccCCHHHHHHHHHHHHH
Confidence            9999999999999999999987 3  35555555 3332  112222122121110       11222333444444444


Q ss_pred             HHH-HHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          172 SVS-VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       172 ~~~-~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      +.. .....+...++.++...+...+++|+.+.+++++++||+++..+++|+++++.|+.+....
T Consensus       224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         224 STGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            443 5666777899999999999999999999999999999999999999999999999998754

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.81  E-value=3e-19  Score=144.96  Aligned_cols=224  Identities=15%  Similarity=0.222  Sum_probs=184.3

Q ss_pred             CCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC-
Q 023136            8 PFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-   86 (287)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~-   86 (287)
                      +-+-+.+...++.+.+.+...|-++||+|.++..+-+++-|+-+++++.++.++++.|+++.+++++++|+++....+. 
T Consensus        82 ~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K  161 (337)
T KOG1580|consen   82 NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK  161 (337)
T ss_pred             CCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence            3445778888999999999999999999999999999999999999999999999999999999999999998876321 


Q ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136           87 ------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY  160 (287)
Q Consensus        87 ------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (287)
                            +....|.++.+.|-.+.++....++++.+.+.-+..+++.|.++++.+.+....++.+..-. ...+. .-.+.
T Consensus       162 v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElwe-F~yF~-~RhP~  239 (337)
T KOG1580|consen  162 VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWE-FFYFV-QRHPY  239 (337)
T ss_pred             cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHH-HHHHH-HhccH
Confidence                  22357999999999999999999999998777788899999999999887665554432100 00011 11123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      .++-+...++.+..-+++.|..+...+|.+.|++.+.+..++++.|+++|+++++.+||+|..+++.|...=.
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            3344444445555559999999999999999999999999999999999999999999999999999887644

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.80  E-value=1.8e-18  Score=149.31  Aligned_cols=228  Identities=17%  Similarity=0.152  Sum_probs=179.3

Q ss_pred             CCCCchhHHHHHHHHHHH----HhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136            7 KPFDPRAVMGFGVLNGIS----IGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT   82 (287)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~----~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~   82 (287)
                      ++...++..-.++.++.-    .++.|.++.|++++..+++.+++-+||..++.++..||+++.|.+++.+.++|++++.
T Consensus       151 ~~~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt  230 (416)
T KOG2765|consen  151 GKLTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVT  230 (416)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEE
Confidence            344456777777777644    4556679999999999999999999999999999999999999999999999999999


Q ss_pred             ecCC--------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccc
Q 023136           83 VTDL--------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKF--KVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNV  152 (287)
Q Consensus        83 ~~~~--------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  152 (287)
                      .+|.        +....|.++++.+++.||+|.++.||-..++  ++|...+..|..++..+.+.+...+++..  ..+.
T Consensus       231 ~~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~--~~e~  308 (416)
T KOG2765|consen  231 MGDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF--GEER  308 (416)
T ss_pred             eccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh--ccCc
Confidence            8643        2337899999999999999999999988765  56777677776666665555444444322  2223


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136          153 FAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  232 (287)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~  232 (287)
                      ++......+-..++.+.+..++..+.+.++.-.++|.+..+-..++.+++++.+.++-|.++++.+++|.+.|++|.++.
T Consensus       309 F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~v  388 (416)
T KOG2765|consen  309 FELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIV  388 (416)
T ss_pred             ccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhe
Confidence            33333333333344444444455888888899999999999999999999999999999999999999999999999998


Q ss_pred             HHhh
Q 023136          233 SYCC  236 (287)
Q Consensus       233 ~~~~  236 (287)
                      ++..
T Consensus       389 n~~~  392 (416)
T KOG2765|consen  389 NISS  392 (416)
T ss_pred             eccc
Confidence            7653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1e-17  Score=141.10  Aligned_cols=230  Identities=19%  Similarity=0.180  Sum_probs=194.0

Q ss_pred             CCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC-
Q 023136            7 KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-   85 (287)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~-   85 (287)
                      .+.|+.++.-++.....+..|++-+++|++-++..+.+++--+-+++.+.++.|+|++..+++...++..|+.+....+ 
T Consensus        79 ~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~  158 (327)
T KOG1581|consen   79 GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPN  158 (327)
T ss_pred             CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecC
Confidence            3567788888999999999999999999999999999999999999999999999999999999999999999887531 


Q ss_pred             -C-------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccccccc
Q 023136           86 -L-------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKY  157 (287)
Q Consensus        86 -~-------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  157 (287)
                       .       +..++|+.+....-++.++.+..++++.+++++++++++++.++++++.-.......+.+.+.  ..-...
T Consensus       159 s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~a--v~F~~~  236 (327)
T KOG1581|consen  159 SDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPA--VSFIKE  236 (327)
T ss_pred             CCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchH--HHHHHc
Confidence             1       245789999999999999999999999999999999999999999987776664333322211  111122


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          158 TPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      .+..+.=++..++++..-+...|..+++.+|++...+.+.|.+++++++.+.+|.++++.|+.|..+++.|+.+-.+.+.
T Consensus       237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~  316 (327)
T KOG1581|consen  237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK  316 (327)
T ss_pred             ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence            34455556666666666799999999999999999999999999999999999999999999999888888887666554


Q ss_pred             c
Q 023136          238 L  238 (287)
Q Consensus       238 ~  238 (287)
                      +
T Consensus       317 ~  317 (327)
T KOG1581|consen  317 K  317 (327)
T ss_pred             h
Confidence            4

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.79  E-value=7.7e-18  Score=143.08  Aligned_cols=209  Identities=20%  Similarity=0.217  Sum_probs=167.3

Q ss_pred             hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC-----
Q 023136           12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-----   86 (287)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~-----   86 (287)
                      .++..-+++|..+..+.+.++++++++.+++++++..++|++++++++|+|++++||.++++.++|+.++..++.     
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            445556889999999999999999999999999999999999999999999999999999999999999865211     


Q ss_pred             ------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccc
Q 023136           87 ------------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFA  154 (287)
Q Consensus        87 ------------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  154 (287)
                                  .....|+++.++++++.++..++.||.+|+.+.+.+....+...++.++.++.....++.......+-
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f  177 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFF  177 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCch
Confidence                        11358999999999999999999999999876676666666666777776665444443222222233


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHH
Q 023136          155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILI  224 (287)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~l  224 (287)
                      ..++...|..++..++.+    +..-..+|+.+.+.-+....+..+++.+.++++||.++|....+|..+
T Consensus       178 ~G~~~~~~~~i~~~a~gG----llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  178 HGYSWWVWIVIFLQAIGG----LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             hhcchHHHHHHHHHHHhh----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            445555555555555554    445555899999999999999999999999999999999999999764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.78  E-value=1e-17  Score=139.33  Aligned_cols=229  Identities=20%  Similarity=0.285  Sum_probs=182.7

Q ss_pred             CCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC--
Q 023136            8 PFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--   85 (287)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~--   85 (287)
                      ++..+.+++-++++..+..+.|.|+.+++++.+|+++....+|+.+++..+++++++.+||+|+....+|+.++...|  
T Consensus        83 pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~  162 (372)
T KOG3912|consen   83 PFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH  162 (372)
T ss_pred             CCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence            344555777899999999999999999999999999999999999999999999999999999999999999887643  


Q ss_pred             --------CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCC----cccc
Q 023136           86 --------LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTN----KNVF  153 (287)
Q Consensus        86 --------~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~  153 (287)
                              .+.-..|+.+.+++-+..|..++..+|..++.+++|.+...|..++|.+.+-++.......+..    -+..
T Consensus       163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~  242 (372)
T KOG3912|consen  163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPR  242 (372)
T ss_pred             cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCC
Confidence                    1233579999999999999999999999999999999999999999976554333322111110    0000


Q ss_pred             -----------ccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhH
Q 023136          154 -----------AFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGI  222 (287)
Q Consensus       154 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~  222 (287)
                                 .....+..........+...+.|+......+..|+++-++...+|..+..+++..+.+|.++..|+.|.
T Consensus       243 g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGF  322 (372)
T KOG3912|consen  243 GVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGF  322 (372)
T ss_pred             cchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence                       011112222333333333335677777778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 023136          223 LIAVIGMVLYSYCC  236 (287)
Q Consensus       223 ~lil~g~~~~~~~~  236 (287)
                      ++.+.|.++|+-..
T Consensus       323 liLi~Gi~lY~~il  336 (372)
T KOG3912|consen  323 LILIMGIILYNQIL  336 (372)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999997543

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.8e-18  Score=143.50  Aligned_cols=232  Identities=16%  Similarity=0.235  Sum_probs=194.5

Q ss_pred             CCCCchhHHHHHHHHHHHHhhhcccccc-cchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec-
Q 023136            7 KPFDPRAVMGFGVLNGISIGLLNLSLGF-NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT-   84 (287)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~-   84 (287)
                      ++.|.|.+.....++.....++|+++++ ++.+...++++..++-++..+++++|+|++.+|+.++++..+|++++... 
T Consensus        60 ~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s  139 (330)
T KOG1583|consen   60 PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFS  139 (330)
T ss_pred             CCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeec
Confidence            6788999999999999999999999999 89999999999999999999999999999999999999999999999752 


Q ss_pred             --CC---------c---c----chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHH-hhcc
Q 023136           85 --DL---------Q---L----NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGP-FLDG  145 (287)
Q Consensus        85 --~~---------~---~----~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  145 (287)
                        |.         +   .    ..+|+.+...+.+..|...++++..-|+++-++-+.++|.+..+....++..- +...
T Consensus       140 ~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~  219 (330)
T KOG1583|consen  140 SKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSH  219 (330)
T ss_pred             CcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHH
Confidence              11         0   0    13799999999999999999999999999889999999999888766544321 1111


Q ss_pred             cc----CCc---cccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhh
Q 023136          146 LL----TNK---NVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN  218 (287)
Q Consensus       146 ~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~  218 (287)
                      +.    ...   +.... .-+..|+.++..++..|++--..|....++++.+.++.-++|..+++++|++.|.+++++..
T Consensus       220 ~~~~~~se~~~~p~~g~-~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h  298 (330)
T KOG1583|consen  220 WRLAFKSESYLIPLLGF-KVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH  298 (330)
T ss_pred             HHHHhcCcceeccccCc-cccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH
Confidence            11    100   01111 13567788999999998888888888999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhcch
Q 023136          219 ILGILIAVIGMVLYSYCCSLE  239 (287)
Q Consensus       219 ~~G~~lil~g~~~~~~~~~~~  239 (287)
                      |+|..++..|.++|.-...+.
T Consensus       299 ~lGa~lVF~Gt~~fa~~~~~~  319 (330)
T KOG1583|consen  299 WLGAALVFFGTLLFANVWNHP  319 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHcCc
Confidence            999999999999998654433

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.7e-16  Score=136.04  Aligned_cols=224  Identities=22%  Similarity=0.243  Sum_probs=178.0

Q ss_pred             hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC------
Q 023136           12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD------   85 (287)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~------   85 (287)
                      .++..-+++|+++..+.+.++.+.+++++++..++.++.|++++++++++|++++||.++++.++|+.++-.+.      
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            44555688999999999999999999999999999999999999999999999999999999999999886211      


Q ss_pred             -----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136           86 -----LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY  160 (287)
Q Consensus        86 -----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (287)
                           .+....|....+.+++..++..++.+|++|+-+.+-+-.......+|.++.++.....++....+..+-.+++..
T Consensus       173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~  252 (345)
T KOG2234|consen  173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSI  252 (345)
T ss_pred             cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHH
Confidence                 123468999999999999999999999999766666655555555666666555444443222234445667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhcch
Q 023136          161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE  239 (287)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~~~  239 (287)
                      .|+.++..++.+....    ...++.+-+.-.....+..+++.+.|+.++|-++|....+|..+++.++.+|...+.++
T Consensus       253 vw~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  253 VWLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            7777777777764333    34677777777777778899999999999999999999999999999999998544433

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.74  E-value=7.8e-16  Score=129.67  Aligned_cols=213  Identities=16%  Similarity=0.151  Sum_probs=163.7

Q ss_pred             HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchHHHHHH
Q 023136           17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLS   96 (287)
Q Consensus        17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~l~   96 (287)
                      .+++.+.++..+..+...-.+-.+++=.+..|++.++++.+++|||+++.||++++++.+|+........+.++....+ 
T Consensus        78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l-  156 (293)
T COG2962          78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL-  156 (293)
T ss_pred             HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH-
Confidence            4677788999999999888888888888888999999999999999999999999999999998887666777664444 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHH
Q 023136           97 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVN  176 (287)
Q Consensus        97 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (287)
                         +++|++|...-|+    .++++.+..+...+.-.+..+.+....+...+    +....+...+.+.+..|.++..--
T Consensus       157 ---a~sf~~Ygl~RK~----~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~----~~~~~~~~~~~LLv~aG~vTavpL  225 (293)
T COG2962         157 ---ALSFGLYGLLRKK----LKVDALTGLTLETLLLLPVALIYLLFLADSGQ----FLQQNANSLWLLLVLAGLVTAVPL  225 (293)
T ss_pred             ---HHHHHHHHHHHHh----cCCchHHhHHHHHHHHhHHHHHHHHHHhcCch----hhhcCCchHHHHHHHhhHHHHHHH
Confidence               4889999974333    35688888877766666555555544442211    111122334455666666654433


Q ss_pred             HHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhcchhh
Q 023136          177 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ  241 (287)
Q Consensus       177 ~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~~~~~  241 (287)
                      .+.....++.+=.+.++..|++|....+++++++||+++..++.+.++|.+|.++|.....++.+
T Consensus       226 ~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r  290 (293)
T COG2962         226 LLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTAR  290 (293)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44445588888889999999999999999999999999999999999999999999987665443

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.73  E-value=7.4e-17  Score=127.96  Aligned_cols=143  Identities=31%  Similarity=0.574  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccc-----cchhH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKK-----FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFK-----YTPYV  161 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~  161 (287)
                      |.++++.++++.|+++++.|+..++     .+.++.++++|+++.+.+.+++..++.|+...........     .....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            7889999999999999999999987     5889999999999999999999888887654222221111     14567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          162 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      +..++..++.++.+|+..+..++++||++.++.+.+|.++.+++|+++|||++|+.+++|+++.++|+++|+|
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999874

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00688 rarD rarD protein

Probab=99.73  E-value=2e-16  Score=136.19  Aligned_cols=182  Identities=13%  Similarity=0.088  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchHHHH
Q 023136           15 MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSV   94 (287)
Q Consensus        15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~   94 (287)
                      ...+++.+.+..+.+.++++++++.++++.++.|+++++++++++|||+++++|++++++++|+.++..++.+..    .
T Consensus        74 ~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~  149 (256)
T TIGR00688        74 LLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----W  149 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----H
Confidence            334666788899999999999999999999999999999999999999999999999999999997755332222    4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHH
Q 023136           95 LSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVS  174 (287)
Q Consensus        95 l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (287)
                      ++++++++|+.|.+..|+..++   +..+...+. ............ ..++... .  .... ...|..++..++.+..
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~--~~~~-~~~~~~l~~~g~~t~i  220 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT---DLAGFCLET-LSLMPVAIYYLL-QTDFATV-Q--QTNP-FPIWLLLVLAGLITGT  220 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC---CcchHHHHH-HHHHHHHHHHHH-HhccCcc-c--ccCc-hhHHHHHHHHHHHHHH
Confidence            5789999999999999997653   222222211 111111111111 1111110 0  0111 1123334444455555


Q ss_pred             HHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHh
Q 023136          175 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL  209 (287)
Q Consensus       175 ~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~  209 (287)
                      .+...+..+++.++.+.+.+.+++|+++.+++.++
T Consensus       221 ~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       221 PLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            67777888999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.73  E-value=4.5e-16  Score=136.25  Aligned_cols=211  Identities=16%  Similarity=0.163  Sum_probs=158.5

Q ss_pred             CCchhHHHHHHH----HHHHHhhhcccccccchhHHHHHHh-hHHHHHHHHHHHhcceecchhh----HHHHHHHhhhhe
Q 023136            9 FDPRAVMGFGVL----NGISIGLLNLSLGFNSVGFYQMTKL-AIIPCTILLETLFFRKKFSRNI----QLSLVILLVGVG   79 (287)
Q Consensus         9 ~~~~~~~~~~~~----~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~l~~~l~~~e~~~~~~----~~~~~l~~~G~~   79 (287)
                      ++.++.++.+.+    .+.+..+++.+.++++++.+..+.+ ++++++++.+.+++|||.++++    ++|++++++|+.
T Consensus        53 ~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~  132 (290)
T TIGR00776        53 FWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVY  132 (290)
T ss_pred             ccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHh
Confidence            344556666555    4455588889999999999999998 8899999999999999999999    999999999999


Q ss_pred             eeeecCCc-------cc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh---HHHHHHHHHHHHhhccccC
Q 023136           80 IATVTDLQ-------LN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSC---PYQALTLFIIGPFLDGLLT  148 (287)
Q Consensus        80 l~~~~~~~-------~~-~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  148 (287)
                      ++...+.+       .+ ..|+++++.|+++|+.|.+..|+..    .+|.+..+.+.   +.+..++....  ..    
T Consensus       133 l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~--~~----  202 (290)
T TIGR00776       133 LTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG----VDGLSVLLPQAIGMVIGGIIFNLGH--IL----  202 (290)
T ss_pred             eEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHcC----CCcceehhHHHHHHHHHHHHHHHHH--hc----
Confidence            88753221       23 6899999999999999999999762    37777644333   33333332211  00    


Q ss_pred             CccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc-ccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhh----hhHH
Q 023136          149 NKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIG-KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGIL  223 (287)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~----~G~~  223 (287)
                      .   .+. .....+ ..+..+++....+...+...+ +.++.+.+++.+++|+.+.+++++++||+.+..++    +|++
T Consensus       203 ~---~~~-~~~~~~-~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~  277 (290)
T TIGR00776       203 A---KPL-KKYAIL-LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGII  277 (290)
T ss_pred             c---cch-HHHHHH-HHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHH
Confidence            0   001 112223 333366664444555556678 99999999999999999999999999999999999    9999


Q ss_pred             HHHHHHHHHHH
Q 023136          224 IAVIGMVLYSY  234 (287)
Q Consensus       224 lil~g~~~~~~  234 (287)
                      +++.|+.+...
T Consensus       278 lIi~~~~l~~~  288 (290)
T TIGR00776       278 LIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHhc
Confidence            99999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.73  E-value=1.2e-18  Score=143.89  Aligned_cols=215  Identities=13%  Similarity=0.100  Sum_probs=171.3

Q ss_pred             hhHH-HHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec-----C
Q 023136           12 RAVM-GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT-----D   85 (287)
Q Consensus        12 ~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~-----~   85 (287)
                      |+|+ .-+.+...+..+.+++++|++.+.+.++..++|++|.+++|.++|||+++...++..+.+.|++++..+     +
T Consensus        97 R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~  176 (346)
T KOG4510|consen   97 RKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD  176 (346)
T ss_pred             EEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCC
Confidence            4444 448888888999999999999999999999999999999999999999999999999999999999762     1


Q ss_pred             C---------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccc
Q 023136           86 L---------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFK  156 (287)
Q Consensus        86 ~---------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  156 (287)
                      .         +.+..|...++.++++.|-.+++.|++.|+  .+....+.|..+.+.+..++....+.       ..+..
T Consensus       177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~--~h~~msvsyf~~i~lV~s~I~~~~ig-------~~~lP  247 (346)
T KOG4510|consen  177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKN--AHAIMSVSYFSLITLVVSLIGCASIG-------AVQLP  247 (346)
T ss_pred             CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcc--ccEEEEehHHHHHHHHHHHHHHhhcc-------ceecC
Confidence            1         123568888999999999999999999884  46666666777777766655444333       12333


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          157 YTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      +...-+++++..|+.++.-+......++.--+-..++..+.+.+++.++.+++||+.++++.+.|.++++.+.+.....
T Consensus       248 ~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~  326 (346)
T KOG4510|consen  248 HCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK  326 (346)
T ss_pred             ccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence            3344445666677777777888888876666666778889999999999999999999999999998888887765543

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.72  E-value=8.5e-17  Score=133.30  Aligned_cols=231  Identities=16%  Similarity=0.171  Sum_probs=193.8

Q ss_pred             CCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC
Q 023136            6 HKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD   85 (287)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~   85 (287)
                      ++..|||.+..++.+..+...+.|-++.|++.+...+++++-.+-+++.+.++-++|+.++.+++..++..|+++....|
T Consensus       101 ~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLAD  180 (367)
T KOG1582|consen  101 RRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLAD  180 (367)
T ss_pred             ceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcc
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999888755


Q ss_pred             ----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhH
Q 023136           86 ----LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYV  161 (287)
Q Consensus        86 ----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (287)
                          .+++..|+++.-.+-++.|+-...+++.++.++.+..++.+|....+.+.++......++........ .......
T Consensus       181 s~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fc-aehp~~t  259 (367)
T KOG1582|consen  181 SQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFC-AEHPVRT  259 (367)
T ss_pred             cccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHH-HhCcHhH
Confidence                35778999999999999999999999999988889999999999888887776555444332221111 1122223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          162 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      ....++-+..++.-.......++..++.++..+.+.|..+++++|+++|..++|....-|..+++.|+.+..+.++
T Consensus       260 yGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  260 YGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            3445555555655566666678999999999999999999999999999999999999999999999999887663

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.68  E-value=2.4e-15  Score=123.76  Aligned_cols=212  Identities=16%  Similarity=0.148  Sum_probs=164.0

Q ss_pred             CCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC--
Q 023136            8 PFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--   85 (287)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~--   85 (287)
                      +.+|+.....|+..+..+.++|.+++.+|.+.+..+.++-|+.+.+++    .+|.+  ..+-+.+.+.|+.++....  
T Consensus        68 ~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~--d~vwvaLAvlGi~lL~p~~~~  141 (292)
T COG5006          68 KPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLR--DFVWVALAVLGIWLLLPLGQS  141 (292)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchh--hHHHHHHHHHHHHhheeccCC
Confidence            344566777799999999999999999999999999999999987654    34443  4445566677777665422  


Q ss_pred             -CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHH
Q 023136           86 -LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFF  164 (287)
Q Consensus        86 -~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (287)
                       ...+..|..+++.++.||+.|.+..||..+.  .+..+.+..-+..++++.+++.....        -+..+++..+..
T Consensus       142 ~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~--~~g~~g~a~gm~vAaviv~Pig~~~a--------g~~l~~p~ll~l  211 (292)
T COG5006         142 VWSLDPVGVALALGAGACWALYIVLGQRAGRA--EHGTAGVAVGMLVAALIVLPIGAAQA--------GPALFSPSLLPL  211 (292)
T ss_pred             cCcCCHHHHHHHHHHhHHHHHHHHHcchhccc--CCCchHHHHHHHHHHHHHhhhhhhhc--------chhhcChHHHHH
Confidence             3567899999999999999999999998863  35566666666677777666554322        123345556666


Q ss_pred             HHHHHHHHHHHHHHHHH-hhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          165 IVLSCLISVSVNFSTFL-VIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       165 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      .+..++++...-|..=. .+++.++-++++...++|.++.+.+++++||++|+.||+|+..++.+....++.
T Consensus       212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt  283 (292)
T COG5006         212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLT  283 (292)
T ss_pred             HHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccc
Confidence            77777777655554433 399999999999999999999999999999999999999999999998876654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.65  E-value=3.7e-17  Score=134.33  Aligned_cols=216  Identities=14%  Similarity=0.194  Sum_probs=170.1

Q ss_pred             CCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC---
Q 023136            9 FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---   85 (287)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~---   85 (287)
                      ..|++++.+++...-+.++...+.||++.....++.+...+.+.+++|+++|.|+++.|+.|++++++|+.++...|   
T Consensus        76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a  155 (336)
T KOG2766|consen   76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA  155 (336)
T ss_pred             HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence            34677888888888788888899999999999999999999999999999999999999999999999999887633   


Q ss_pred             -----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136           86 -----LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY  160 (287)
Q Consensus        86 -----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (287)
                           .+....|+++.++++-+||..++..+.+.|  +.+..+++....++|+++..+- ++.+.    .......|+..
T Consensus       156 gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~----~~~~tl~w~~~  228 (336)
T KOG2766|consen  156 GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFER----HHVSTLHWDSA  228 (336)
T ss_pred             ccccCCCCCccCcEEEEecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-Hhhhc----cceeeEeehHH
Confidence                 234468999999999999999999999999  4599999999999999888776 44442    22233344433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      ....+. ..+.-+..+...-..++..+++...+-......+++++  ..||-+++|...++.+.+..|.++|..
T Consensus       229 i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  229 IFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             HHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            222222 22222233334444588888888777777778888887  677888999999999999999999953

>TIGR00803 nst UDP-galactose transporter

Probab=99.40  E-value=2.3e-12  Score=108.58  Aligned_cols=193  Identities=18%  Similarity=0.091  Sum_probs=131.0

Q ss_pred             cchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee--------------------cCC-------c
Q 023136           35 NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV--------------------TDL-------Q   87 (287)
Q Consensus        35 ~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~--------------------~~~-------~   87 (287)
                      ++++....+++..++++++..+.+.++|++..|+++.++...|++....                    ++.       +
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            4677888899999999999999999999889999999998888874221                    111       2


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccc-cCCccccccccchhHHHHHH
Q 023136           88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGL-LTNKNVFAFKYTPYVLFFIV  166 (287)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (287)
                      ....|....+.+.++.++..+++++..|+.+.+.+.......+++.+.... ....... ......+...++...+..++
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFS-VLLWSDGTLISNFGFFIGYPTAVWIVGL  160 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHH-HHhhcccchhhccCcccCCchHHHHHHH
Confidence            345678888888889999999999987754333222222222222221111 1111111 00011111223333333333


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136          167 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  232 (287)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~  232 (287)
                      . ...+   +.+..+.+++.++.+.+....++++++.++|+++|||+++..+++|..+++.|+.+|
T Consensus       161 ~-~a~~---~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       161 L-NVGG---GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             H-HHhc---CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            3 3333   566777899999999999999999999999999999999999999999999987654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.19  E-value=2.4e-10  Score=86.85  Aligned_cols=124  Identities=20%  Similarity=0.379  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH-HHHHHHHH
Q 023136          101 LTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFST  179 (287)
Q Consensus       101 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  179 (287)
                      ++||.+.++.|+..++  .|+.+..+++...+.+ +++.........      ....+...+...+..+.+ ....+...
T Consensus         1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP------FKNLSPRQWLWLLFLGLLGTALAYLLY   71 (126)
T ss_pred             ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc------ccCCChhhhhhhhHhhccceehHHHHH
Confidence            4688999999999985  5999999999998887 655555544322      111222222333444444 34556777


Q ss_pred             HHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          180 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       180 ~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      +..+++.++...+.+.+++|+++.++++++++|++++.+++|+.+++.|+.+..
T Consensus        72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.17  E-value=4.5e-10  Score=83.33  Aligned_cols=134  Identities=18%  Similarity=0.191  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      ..++++.+++++++.-++.|--.+  ++||..-+...++.....+.......+++..     ....++..|..++++++.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~-----~~~~~~k~~lflilSGla   76 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQA-----GGEIGPKSWLFLILSGLA   76 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceec-----ccccCcceehhhhHHHHH
Confidence            468899999999999999999888  5688877777777666666655554443321     111334455677777766


Q ss_pred             HHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136          172 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  232 (287)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~  232 (287)
                      +....+++|++++.-.+.....+.-+.+++++++|+++++|++|..+++|+.+|++|.++.
T Consensus        77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence            6666777888899998888888999999999999999999999999999999999998764

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.11  E-value=1.7e-10  Score=91.94  Aligned_cols=217  Identities=12%  Similarity=0.049  Sum_probs=156.4

Q ss_pred             hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC--Cccc
Q 023136           12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--LQLN   89 (287)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~--~~~~   89 (287)
                      ++..|++++..+..+.+..+++.++++.++.+..+.-.|+.+++++.+|+|+...+++++++.+.|+.+....|  ...+
T Consensus        54 ~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e  133 (290)
T KOG4314|consen   54 IRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADE  133 (290)
T ss_pred             eeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhh
Confidence            45567777888888899999999999999999999999999999999999999999999999999999988644  3456


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHH-----HhhccccCCccccccccchhHHHH
Q 023136           90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG-----PFLDGLLTNKNVFAFKYTPYVLFF  164 (287)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  164 (287)
                      ++|+..++.|+.+.|+|-+.-|+.....+.  -+..-+++-.+..-+.+..     +.+.+.-+.++....+|     ..
T Consensus       134 ~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~--Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PW-----G~  206 (290)
T KOG4314|consen  134 IIGIACAVGSAFMAALYKVLFKMFIGNANF--GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPW-----GC  206 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCc-----hh
Confidence            899999999999999999999998874322  1222222222222221111     11111111111111122     34


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          165 IVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      ....+.+....|+.....+..+.|...|+-.....+.-...+.++=+-..+...+.|-.+|.+|.++....
T Consensus       207 l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP  277 (290)
T KOG4314|consen  207 LCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP  277 (290)
T ss_pred             hhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence            44555555566777777778888888887666666667777776655588999999999999999887643

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.01  E-value=2.6e-08  Score=84.88  Aligned_cols=200  Identities=20%  Similarity=0.207  Sum_probs=142.5

Q ss_pred             HHHHHHHHhhhcccccccchhHHHHHH-hhHHHHHHHHHHHhcceecchhhHH----HHHHHhhhheeeeecCCc-----
Q 023136           18 GVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQL----SLVILLVGVGIATVTDLQ-----   87 (287)
Q Consensus        18 ~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~l~~~l~~~e~~~~~~~~----~~~l~~~G~~l~~~~~~~-----   87 (287)
                      +++...+...++.+++++.++.+--+. ..+.+.+.+++.++++|..+..+++    +++++++|+.+....|.+     
T Consensus        52 G~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~  131 (269)
T PF06800_consen   52 GAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSS  131 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            677778889999999999998766554 6777889999999999988877664    889999999988764321     


Q ss_pred             ---cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHH
Q 023136           88 ---LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFF  164 (287)
Q Consensus        88 ---~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (287)
                         ....|.+..+++.+.|..|.++.|..    +.++++...=+++--.+..+++.....     ....+ ..    .+.
T Consensus       132 ~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~-----~~~~~-k~----~~~  197 (269)
T PF06800_consen  132 SKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSK-----KPFFE-KK----SWK  197 (269)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhccc-----ccccc-cc----hHH
Confidence               12469999999999999999986662    457877776554322222222222111     11111 11    123


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHHH
Q 023136          165 IVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVL  231 (287)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~~  231 (287)
                      -++.+++=...|...+...++.+..+.=.+..+..+++.+.+++++||+=+.+++    +|++++++|.++
T Consensus       198 nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  198 NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            3444444445567777778888888888899999999999999999998787644    688888888754

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=98.98  E-value=1.7e-08  Score=86.85  Aligned_cols=140  Identities=14%  Similarity=0.146  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136           91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  170 (287)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (287)
                      .|.++.++++++|+...+..|. ..  +++|.++.++..+++.+.+++...............+.......+......++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            4889999999999999999998 44  47999999999999887766554333211000000000001112233444555


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          171 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      .........+..++++++..++++.+..|+++.++++++++|+++..+++|..+.++|+.+..
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            444556777788999999999999999999999999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.94  E-value=4.1e-08  Score=86.35  Aligned_cols=142  Identities=13%  Similarity=0.194  Sum_probs=105.7

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHH
Q 023136           86 LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFI  165 (287)
Q Consensus        86 ~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (287)
                      .+....|.++.+.+++.|+...++.|.. .  +++|.++.+++..++.+++++......+......  .. .+...+...
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~   76 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT--LI-QTPQKIFML   76 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH--HH-cCHHHHHHH
Confidence            3445689999999999999999999764 4  4799999999999988766654332221100000  00 112222223


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          166 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      +..++.........++.++++++...++..+..|++..++++++++|+++..+++|.++.++|+.+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            34444444457777888999999999999999999999999999999999999999999999998765

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.89  E-value=2.9e-09  Score=79.92  Aligned_cols=77  Identities=22%  Similarity=0.259  Sum_probs=66.8

Q ss_pred             CchhHHHHHHHHH-HHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCc
Q 023136           10 DPRAVMGFGVLNG-ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQ   87 (287)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~   87 (287)
                      ++..+...+++.. .++.+.+.++++.+ +.+..+.++.|+++++++++++|||++++++.+++++++|++++..+|.+
T Consensus        33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            3344455566665 88999999999999 58889999999999999999999999999999999999999998876654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.79  E-value=2.5e-07  Score=80.71  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136           93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  172 (287)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (287)
                      ..+.+.+++++|...+..|+..+++  ++.  ..+....+.+.+.+..........    ... .....+...+..++..
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~   73 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE--PDF--LWWALLAHSVLLTPYGLWYLAQVG----WSR-LPATFWLLLAISAVAN   73 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch--hHH--HHHHHHHHHHHHHHHHHHhcccCC----CCC-cchhhHHHHHHHHHHH
Confidence            5688999999999999999877753  443  344444555555444332110000    000 1122333455555566


Q ss_pred             HHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          173 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      .......+...++.++...+.+.+..|+++.++++++++|+++..+++|..+++.|+.+...
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            66677888889999999999999999999999999999999999999999999999987654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.79  E-value=2e-08  Score=88.02  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136           18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV   83 (287)
Q Consensus        18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~   83 (287)
                      -+.++.+..+...++.+.|.+..+-+.....++..+++..++|||++++.+.|..++++|..++..
T Consensus        57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            345677888999999999999999999999999999999999999999999999999999987654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.71  E-value=7.2e-07  Score=80.29  Aligned_cols=137  Identities=12%  Similarity=0.152  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      -+..++..-++|+.++++.|...+. ++++....+|....++++++++....+....    .+ ..++..+..+.+.+++
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~----~~-~~~~~~~~~l~l~g~~   87 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSRS----LP-PLSVSILSKIGLLGFL   87 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhcc----cC-cchHHHHHHHHHHHHH
Confidence            4566788889999999999999964 7899999999999988888776554331100    00 1112233344445555


Q ss_pred             HHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHh------cCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          172 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL------LHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~------~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      +..++...+..++++++..++++.++.|+++.++++++      ++|+++..+++|.++.++|+.+...
T Consensus        88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            54455667778999999999999999999999999999      6999999999999999999987654

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.56  E-value=6.1e-08  Score=72.12  Aligned_cols=69  Identities=17%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136           15 MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV   83 (287)
Q Consensus        15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~   83 (287)
                      ..-|+..++++.+++.+++.-.++.+.-+..++|+++++++++++|||++..+|+|++++++|++++..
T Consensus        71 ilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          71 ILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            334777889999999999999999999999999999999999999999999999999999999998763

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.52  E-value=9.9e-08  Score=72.26  Aligned_cols=70  Identities=16%  Similarity=0.254  Sum_probs=62.8

Q ss_pred             hhHHHHHHH-HHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136           12 RAVMGFGVL-NGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA   81 (287)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~   81 (287)
                      ...+..+.+ ...+..+.+.++++++++.++++.++.|+++.+++++++||++++++++|++++++|+.++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   54 LWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            444445655 4788999999999999999999999999999999999999999999999999999999764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.50  E-value=3e-07  Score=68.60  Aligned_cols=64  Identities=16%  Similarity=0.089  Sum_probs=59.7

Q ss_pred             HHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136           19 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT   82 (287)
Q Consensus        19 ~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~   82 (287)
                      ++++.+..+...+++.+|.+.+..+.++.++++++++++++|||++++|++|+.++++|++++.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4567888999999999999999999999999999999999999999999999999999998764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.43  E-value=9.7e-06  Score=71.26  Aligned_cols=130  Identities=14%  Similarity=0.198  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136           91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  170 (287)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (287)
                      .+.++++.++++|+......|...+  +++|.....+....+.+++++..   . .+.   ..  .....   ..+..++
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~---~-~~~---~~--~~~~~---~~~~~~l   69 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTV---G-FPR---LR--QFPKR---YLLAGGL   69 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHc---c-ccc---cc--cccHH---HHHHHhH
Confidence            4677899999999999999999887  56999999999888877766432   1 111   00  11111   1122222


Q ss_pred             HHHHHHHHHHHh----hcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          171 ISVSVNFSTFLV----IGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       171 ~~~~~~~~~~~~----~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      ....+....+..    .+..++...+++.++.|+++.++++++++|+++..+++|+.+.++|+.+...
T Consensus        70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            222223333332    2456778889999999999999999999999999999999999999987653

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.40  E-value=9.2e-06  Score=69.25  Aligned_cols=141  Identities=15%  Similarity=0.233  Sum_probs=108.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHH
Q 023136           89 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS  168 (287)
Q Consensus        89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (287)
                      ...|+++++.+-+.|+....+.|-+.+   +++.++..+..+++.+.++.......++.+..+   ...++..+..+...
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~---~~~~p~~~~~~~l~   78 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ---LLKQPKTLLMLALT   78 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHhCcHHHHHHHHH
Confidence            457999999999999999988877544   589999999999999888776666554433222   22334445455555


Q ss_pred             HHHHHHHHHHHH-HhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136          169 CLISVSVNFSTF-LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  236 (287)
Q Consensus       169 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~  236 (287)
                      ++.- ..|+..| ++..+-....+|.=.++.|.+.++.|.++++|+++..|+++..+..+|+....+..
T Consensus        79 a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          79 ALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            4443 3455444 55777788899999999999999999999999999999999999999998876543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.39  E-value=2.2e-05  Score=68.96  Aligned_cols=130  Identities=12%  Similarity=-0.045  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136           93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  172 (287)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (287)
                      ....+.-.+.|+...+..|...+  +++|.+...+...++++++++........     ..    ....+......+.+.
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~----~~~~~~~~~~~g~~~   78 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHP-----LP----TLRQWLNAALIGLLL   78 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CC----cHHHHHHHHHHHHHH
Confidence            34567778899999999998877  67999999999999888876654332211     00    111122223333332


Q ss_pred             -HHHHHHHHHhh-cccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          173 -VSVNFSTFLVI-GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       173 -~~~~~~~~~~~-~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                       .......+... ++.++...++..++.|+++.+++.+ ++|+++..+++|+.+.++|+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence             22344445555 8888888999999999999999985 7999999999999999999987653

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.38  E-value=7e-05  Score=66.58  Aligned_cols=217  Identities=12%  Similarity=0.052  Sum_probs=130.1

Q ss_pred             HHHHHHHHHhhhcccccccchhHHH-HHHhhHHHHHHHHHHHhcceec---c----hhhHHHHHHHhhhheeeee----c
Q 023136           17 FGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKF---S----RNIQLSLVILLVGVGIATV----T   84 (287)
Q Consensus        17 ~~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~l~~~l~~~e~~---~----~~~~~~~~l~~~G~~l~~~----~   84 (287)
                      .+++.+.+..++..+++|+.++... +-..++-+..+++..++++|..   +    ..-.+|++++++|+++...    .
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k  158 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK  158 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            3666677788888899999999765 4456778888889999988754   2    3456889999999998876    2


Q ss_pred             CC---------ccchHHHHHHHHHHHHHHHHH-------HHHHHHHhhcCCCHHHHHHHHhH---HHHHHHHH-HHHhhc
Q 023136           85 DL---------QLNVLGSVLSLLAVLTTCVAQ-------IMTNTIQKKFKVSSTQLLYQSCP---YQALTLFI-IGPFLD  144 (287)
Q Consensus        85 ~~---------~~~~~G~~l~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~~  144 (287)
                      |.         .....|++++++|++.++.|+       ...+...+ .+.++.....-+..   .+.+..-+ +.....
T Consensus       159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~  237 (345)
T PRK13499        159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFCFIRL  237 (345)
T ss_pred             ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22         123579999999999999999       44443322 24455433332222   22221111 001100


Q ss_pred             cccCCcc-ccccccc----hhHHHHHHHHHHHHHHHHHHHHHhhcccchhh----HHHhhhhhHHHHHHHHHHhcCCCcc
Q 023136          145 GLLTNKN-VFAFKYT----PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVT----YQVLGHLKTCLVLAFGYVLLHDPFS  215 (287)
Q Consensus       145 ~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~s~~~~l~~v~~~~~s~~~~~e~~~  215 (287)
                      ...+... ......+    .......++.+++=+..+.......++.+...    ..+.+.+..+++.++++ ++||.=+
T Consensus       238 ~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~  316 (345)
T PRK13499        238 AKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKG  316 (345)
T ss_pred             hhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccC
Confidence            0101100 1111111    22334445555555555555555544442222    22334666689999999 5999766


Q ss_pred             ------hhhhhhHHHHHHHHHHHHHh
Q 023136          216 ------WRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       216 ------~~~~~G~~lil~g~~~~~~~  235 (287)
                            ...++|++++++|..+..+.
T Consensus       317 a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        317 ASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHhhc
Confidence                  45678999999999887653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.34  E-value=1.1e-05  Score=69.43  Aligned_cols=119  Identities=12%  Similarity=0.050  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 023136          103 TCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLV  182 (287)
Q Consensus       103 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (287)
                      |+...+..|...+. ..++.+..+++...+.+.+.+.....            ..........+.+++.....+...+..
T Consensus         1 Wg~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~a   67 (260)
T TIGR00950         1 WGTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR------------PPLKRLLRLLLLGALQIGVFYVLYFVA   67 (260)
T ss_pred             CcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc------------cCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677776664 46899999999887776665432211            011112223333333334556677778


Q ss_pred             hcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          183 IGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       183 ~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      ++++++...+++..+.|+++.+++.++++|+++..+++|+.+.++|+.+...
T Consensus        68 ~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        68 VKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            9999999999999999999999999999999999999999999999988653

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.30  E-value=4.5e-05  Score=58.35  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136           91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  170 (287)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (287)
                      .|+++.+.+.++.+..+++.|+-.++.+..+.  ...     ....+.  ...+            +     ...+..++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~--~~~-----~~~~~~--~~~~------------p-----~~~i~lgl   55 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH--AWD-----FIAALL--AFGL------------A-----LRAVLLGL   55 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc--hhH-----HHHHHH--HHhc------------c-----HHHHHHHH
Confidence            47889999999999999999998875432111  110     000000  0000            0     01222333


Q ss_pred             HHHHH-HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHH--hcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          171 ISVSV-NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYV--LLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       171 ~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~--~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      .++.. .+.+...+++.+...+..+..+.++...+.++.  +|||++|+.+++|.++|++|+++.+.
T Consensus        56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            33333 344455588888888887777777777777774  89999999999999999999999764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.30  E-value=3.6e-05  Score=67.80  Aligned_cols=125  Identities=12%  Similarity=0.101  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136           93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  172 (287)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (287)
                      .++.++++++|+...+..|...+  +++|....++....+++.+++..   ..  .     ...+  .   ..+..++..
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~---~~--~-----~~~~--~---~~~~~g~~~   68 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFV---AR--P-----KVPL--N---LLLGYGLTI   68 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHh---cC--C-----CCch--H---HHHHHHHHH
Confidence            35688899999999999998887  57999999999887665544321   10  0     0011  1   122222222


Q ss_pred             HHHH-HHHHHhhcc-cchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          173 VSVN-FSTFLVIGK-TSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       173 ~~~~-~~~~~~~~~-~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      ...+ ...+...++ .++...+++.+..|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus        69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            2222 233444555 5667888889999999999999999999999999999999999987653

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.28  E-value=5.7e-05  Score=68.04  Aligned_cols=128  Identities=11%  Similarity=0.039  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCC-HHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHH
Q 023136          100 VLTTCVAQIMTNTIQKKFKVS-STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFS  178 (287)
Q Consensus       100 ~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (287)
                      =.+...++.+.|+..+.  .+ |+++..++...+.+...+.... . ....+.   .......+..++..+++.......
T Consensus        58 y~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~-~-~~~~~~---~~~~~~~~~~llp~gl~~~~~~~~  130 (350)
T PTZ00343         58 YALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWAT-G-FRKIPR---IKSLKLFLKNFLPQGLCHLFVHFG  130 (350)
T ss_pred             HHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHh-C-CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33444567778888885  47 9999999998887665443321 1 111010   110112334455555555555555


Q ss_pred             HHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          179 TFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       179 ~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      .+..++.+++..++++..+.|+++++++.++++|+++..+++|++++++|+.+...
T Consensus       131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            66779999999999999999999999999999999999999999999999998653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.23  E-value=1.6e-05  Score=59.52  Aligned_cols=62  Identities=16%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             HHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136          174 SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  236 (287)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~  236 (287)
                      ..+...+...++.++ .......+.|+++.+++.++++|+++..+++|..++++|+++..+.+
T Consensus        47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            345555566787775 77788899999999999999999999999999999999999987753

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.15  E-value=0.00015  Score=63.97  Aligned_cols=121  Identities=14%  Similarity=0.143  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 023136          105 VAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIG  184 (287)
Q Consensus       105 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (287)
                      ..++++|+..++. ..|..+..++...+.+...+...  .+....     ...+...+..++..+++........+..++
T Consensus        16 ~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~   87 (302)
T TIGR00817        16 YFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS--SGLPKR-----LKISSALLKLLLPVAIVHTIGHVTSNVSLS   87 (302)
T ss_pred             HHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH--hCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888753 36888888887776655443311  111111     111222333444455555555667778899


Q ss_pred             ccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          185 KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       185 ~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      ++++...+++..+.|+++.+++.++++|+++..+++|..++++|+.+..
T Consensus        88 ~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        88 KVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             hccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999997653

specificities overlap.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.03  E-value=6.5e-05  Score=65.87  Aligned_cols=129  Identities=15%  Similarity=0.112  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      |.+++++++++|+...+..|+..   +.++.+...  ...+.+++......... +.       ......+...+.+++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~-~~-------~~~~~~~~~g~l~G~~   68 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVL-PE-------FWALSIFLVGLLSGAF   68 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhC-Cc-------ccccHHHHHHHHHHHH
Confidence            67899999999999999999875   345555542  33444444333222211 00       1123344445555555


Q ss_pred             HHHHHHHHHHhhcccchhhHHHhhh-hhHHHHHHHHHHhcCCCcchhh----hhhHHHHHHHHHHHH
Q 023136          172 SVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRN----ILGILIAVIGMVLYS  233 (287)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~s~~~~-l~~v~~~~~s~~~~~e~~~~~~----~~G~~lil~g~~~~~  233 (287)
                      =...|+..+...++.+......+.+ +.+++..+++.+++||+.+..+    ++|.+++++|+.+..
T Consensus        69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            4456778888899988888877777 8888999999999999999999    999999999988864

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=1.9e-05  Score=68.15  Aligned_cols=206  Identities=12%  Similarity=0.145  Sum_probs=118.4

Q ss_pred             HHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccc-------h-
Q 023136           19 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN-------V-   90 (287)
Q Consensus        19 ~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~-------~-   90 (287)
                      +.++.+-..++.++.+.|.+..+.+.+++.+..++++..++|||+++...+|..++++|-.+++....+.+       + 
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~  151 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVW  151 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHH
Confidence            44678888889999999999999999999999999999999999999999999999999997776322110       0 


Q ss_pred             -----HHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHH------HHhhccccCCccccccccc
Q 023136           91 -----LGSVLSLLAVLTT-CVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFII------GPFLDGLLTNKNVFAFKYT  158 (287)
Q Consensus        91 -----~G~~l~l~s~~~~-a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~  158 (287)
                           .++++-.+..+.. .+-..+.   .+++  -...++.|..+++.+..+-.      ...+.......+  +..+ 
T Consensus       152 ~~~~~~~Fliy~~~iil~~~il~~~~---~p~~--g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~--ql~~-  223 (335)
T KOG2922|consen  152 ELATEPGFLVYVIIIILIVLILIFFY---APRY--GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN--QLFY-  223 (335)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHheee---cccc--cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc--cccc-
Confidence                 1222111111111 1111111   1111  11223444444444331100      000000011111  1112 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhh-HHHHHHHHHHhcCC--Ccchhhh----hhHHHHHHHHHH
Q 023136          159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLLHD--PFSWRNI----LGILIAVIGMVL  231 (287)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~v~~~~~s~~~~~e--~~~~~~~----~G~~lil~g~~~  231 (287)
                      +..|.+++...............+++..++...+.+.++. .-+++..|.++|.|  ..+..++    .|+..++.|+.+
T Consensus       224 ~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl  303 (335)
T KOG2922|consen  224 PLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL  303 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence            2333333333333333333445567777666555544444 55888899999987  5555554    578888888877


Q ss_pred             H
Q 023136          232 Y  232 (287)
Q Consensus       232 ~  232 (287)
                      .
T Consensus       304 L  304 (335)
T KOG2922|consen  304 L  304 (335)
T ss_pred             e
Confidence            5

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.90  E-value=3.3e-05  Score=59.09  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHH--hcceecchhhHHHHHHHhhhheeeeec
Q 023136           18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETL--FFRKKFSRNIQLSLVILLVGVGIATVT   84 (287)
Q Consensus        18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l--~~~e~~~~~~~~~~~l~~~G~~l~~~~   84 (287)
                      -.+++++..+.+.+++..|++.+..+.+..++++.+.++.  +++|++++.|++|+.++++|++++...
T Consensus        55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            4457789999999999999999999999998888888885  899999999999999999999987654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.87  E-value=0.00042  Score=61.58  Aligned_cols=139  Identities=22%  Similarity=0.312  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHH
Q 023136           91 LGSVLSLLAVLTTCVAQIMTNTIQKK-FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  169 (287)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (287)
                      .+.+++-..+++-+..++....+.++ .+.+..+..... ....++.......-.+........     ..-++..++.+
T Consensus        13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y-~~l~~vy~~~~~~r~~~~~~~~~~-----~~~~w~y~lla   86 (334)
T PF06027_consen   13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNY-VLLALVYTPILLYRRGFKKWLKVL-----KRPWWKYFLLA   86 (334)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHH-HHHHHHHhhhhhhccccccchhhc-----chhHHHHHHHH
Confidence            45566666667777777777776664 222333333322 222222221111111110101111     11222333345


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          170 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      ++=...|+..+.+.++++-....++.....++++++|++++++++++.+++|..+.++|+.+....
T Consensus        87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            666677999999999999999999999999999999999999999999999999999999887654

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.84  E-value=5.1e-05  Score=57.08  Aligned_cols=72  Identities=17%  Similarity=0.119  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHHHHhhhcccccccchhHHHHHH-hhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136           12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV   83 (287)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~   83 (287)
                      ..+....++++.++++...+++++|.+.+-.+- ...-+.++++++++++|++++.+++++.++++|++++-.
T Consensus        31 ~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         31 GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            335566778889999999999999999877774 688999999999999999999999999999999987744

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.82  E-value=0.00053  Score=60.49  Aligned_cols=125  Identities=19%  Similarity=0.226  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhhcCCC--HHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 023136          104 CVAQIMTNTIQKKFKVS--STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFL  181 (287)
Q Consensus       104 a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (287)
                      ..+.+.+|++.++...+  +..+++.+...+.+...+...... . .  .. +...    +.-....++.........+.
T Consensus        13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~-~--~~-~~~~----~~~~~~~~~~~~~~~~~~~~   83 (303)
T PF08449_consen   13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-F-P--KS-RKIP----LKKYAILSFLFFLASVLSNA   83 (303)
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-c-c--CC-CcCh----HHHHHHHHHHHHHHHHHHHH
Confidence            34667888888755445  777777776666655444332222 0 0  00 0011    11223333444445677778


Q ss_pred             hhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          182 VIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       182 ~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      ++++.+-.+..+....+++..++++.++++++.+..++++..++.+|+.+....+.
T Consensus        84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~  139 (303)
T PF08449_consen   84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS  139 (303)
T ss_pred             HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence            88999999999999999999999999999999999999999999999999886544

; GO: 0055085 transmembrane transport

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.81  E-value=0.00019  Score=53.45  Aligned_cols=57  Identities=21%  Similarity=0.203  Sum_probs=48.9

Q ss_pred             HHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          177 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       177 ~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      +.....+++.+...+-..-.+.++.+.++|+++|||++|+.+++|.+++++|+++..
T Consensus        52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            333445788888777777779999999999999999999999999999999998754

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.79  E-value=0.0016  Score=50.53  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      ..++++.++++.+....++-++.++.+ ||+.-...+...+.+.+.+...+.... +.....+.+      ++...++++
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p------~w~~lGG~l   73 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP------WWAYLGGLL   73 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC------hHHhccHHH
Confidence            357889999999999999999988654 688888888888888877766665533 211111111      133447777


Q ss_pred             HHHHHHHHHHhhcccchhhHHHhhhhh-HHHHHHHHHH-hc---CCCcchhhhhhHHHHHHHHHH
Q 023136          172 SVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYV-LL---HDPFSWRNILGILIAVIGMVL  231 (287)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~-~v~~~~~s~~-~~---~e~~~~~~~~G~~lil~g~~~  231 (287)
                      +..+-........+.++.........- -+.+++++.+ +|   .+++++.+++|.+++++|+.+
T Consensus        74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            777777777778888888777755444 4567777776 22   458999999999999999863

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.78  E-value=0.0016  Score=56.41  Aligned_cols=140  Identities=21%  Similarity=0.120  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHH
Q 023136           90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  169 (287)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (287)
                      ..+....+..++.|+......++..+. ..+......+....+.+....... ... ..   .......  .+...+..+
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~--~~~~~~~~~   77 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLL-LEP-RG---LRPALRP--WLLLLLLAL   77 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHH-hhc-cc---ccccccc--hHHHHHHHH
Confidence            457778888889999999988888875 235555555555544444221111 110 00   0001111  223344444


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHH-HhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          170 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY-VLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~-~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      +.........+..++++++.......+..|++..+++. ++++|+++..+++|..+.+.|+.+......
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~  146 (292)
T COG0697          78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG  146 (292)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence            44444556666669999999999999999999999996 777999999999999999999998765443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.63  E-value=0.00019  Score=52.33  Aligned_cols=69  Identities=28%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhhhcccccccchhHH-HHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136           14 VMGFGVLNGISIGLLNLSLGFNSVGFY-QMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT   82 (287)
Q Consensus        14 ~~~~~~~~~~~~~~~~~al~~~~~~~~-~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~   82 (287)
                      .+...++++.++.+...+++++|.+.+ .+-...-.+.+++.++++++|+++..+++++.++++|++.+-
T Consensus        33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            444566788999999999999999965 455667788889999999999999999999999999998653

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.62  E-value=0.00017  Score=53.53  Aligned_cols=68  Identities=19%  Similarity=0.195  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136           16 GFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV   83 (287)
Q Consensus        16 ~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~   83 (287)
                      ..-+++++++.+...+++++|.+.+-.+ ....-+.+++.++++++|++++.+++++.++++|++++-.
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4456678888999999999999988777 4578888999999999999999999999999999997743

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.61  E-value=0.00021  Score=52.49  Aligned_cols=69  Identities=14%  Similarity=0.019  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136           14 VMGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT   82 (287)
Q Consensus        14 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~   82 (287)
                      .+...++++.++++...+++.+|.+.+-.+ ...-.+.+++.+++++||++++.+++++.++++|++.+-
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            344566788999999999999999966554 447788999999999999999999999999999998763

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.58  E-value=0.00025  Score=52.43  Aligned_cols=67  Identities=15%  Similarity=0.067  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136           15 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA   81 (287)
Q Consensus        15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~   81 (287)
                      ....++++.++++...+++++|.+.+-.+ ....-+.+++.+++++||++++.|++++.++++|++.+
T Consensus        39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            34456677889999999999999966554 45778888999999999999999999999999999764

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.45  E-value=0.0067  Score=53.21  Aligned_cols=125  Identities=14%  Similarity=0.086  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHH
Q 023136           90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  169 (287)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (287)
                      ..|..+.+.++++++......|...+.  .+|.+..++....+++++++.......      .    .....+...+..+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~--~~~~~~~~~R~~~a~l~l~~~~~~~~~------~----~~~~~~~~~~~~g   78 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPL--VGAPGVTALRLALGTLILIAIFKPWRL------R----FAKEQRLPLLFYG   78 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHhHHhc------c----CCHHHHHHHHHHH
Confidence            578999999999999999999998884  699999999999988777654321110      0    0111111222233


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136          170 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  232 (287)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~  232 (287)
                      +.....+...+..++++++...++..+..|+++.+++.    |++.  +..+..+.++|+.+.
T Consensus        79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li  135 (293)
T PRK10532         79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFL  135 (293)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHhee
Confidence            33444456667779999999999999999999887762    4433  334455556666554

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.39  E-value=0.00072  Score=57.68  Aligned_cols=76  Identities=26%  Similarity=0.393  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          162 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      .......+++-...|...+..+++.+|.+..++...+.+++.+++.++++.+++..||.++.+..+|+.+......
T Consensus        17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            3456677777777788999999999999999999999999999999999999999999999999999998765443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.33  E-value=0.016  Score=45.08  Aligned_cols=138  Identities=17%  Similarity=0.134  Sum_probs=92.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHH
Q 023136           89 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS  168 (287)
Q Consensus        89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (287)
                      .....++++.++++......++-++.+..+ +|..-.......+.+.++......++........+..      ++...+
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p------wW~~~G   75 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP------WWAWIG   75 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc------hHHHHc
Confidence            345678899999999999999999888654 6887777788888877777666644332222111111      234445


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHh-hhhhHHHHHHHHHHhcC----CCcchhhhhhHHHHHHHHHHHH
Q 023136          169 CLISVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLH----DPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~s~~~~~----e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      ++++..+-........+.++.++..+ ..-+-+.+++++.+=+.    .+++...++|.+++++|+++..
T Consensus        76 G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          76 GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            56665555555556777777665543 33345566777766543    4899999999999999966543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.21  E-value=0.0038  Score=47.01  Aligned_cols=52  Identities=23%  Similarity=0.403  Sum_probs=41.5

Q ss_pred             hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      +++.+ .+.+++..-+..+.+.+.++++|||++|+.+++|+.+|++|++..+.
T Consensus        51 l~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         51 VKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            44443 23445555667888899999999999999999999999999998754

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.10  E-value=6.6e-05  Score=62.48  Aligned_cols=208  Identities=15%  Similarity=0.177  Sum_probs=134.2

Q ss_pred             hhHHHHHH----HHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhH----HHHHHHhhhheeee
Q 023136           12 RAVMGFGV----LNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQ----LSLVILLVGVGIAT   82 (287)
Q Consensus        12 ~~~~~~~~----~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~----~~~~l~~~G~~l~~   82 (287)
                      .+.+..++    +...+...++.++++++++.+.-+ ..++-+-+.+++++.++|..+..+.    ++++++++|+.+-.
T Consensus        56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs  135 (288)
T COG4975          56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS  135 (288)
T ss_pred             hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence            34444444    444566667789999998877654 4566777889999999999887665    68889999999988


Q ss_pred             ecCC---c-----cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccc
Q 023136           83 VTDL---Q-----LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFA  154 (287)
Q Consensus        83 ~~~~---~-----~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  154 (287)
                      ..|.   +     ....|....+.|.+.|-.|.+..|...    ++.++...-++.    .+.+.+........     +
T Consensus       136 ~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~----v~g~saiLPqAi----GMv~~ali~~~~~~-----~  202 (288)
T COG4975         136 KQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD----VDGLSAILPQAI----GMVIGALILGFFKM-----E  202 (288)
T ss_pred             eeccccccccChHhhhhheeeeeeeccceeeeEeeecccc----ccchhhhhHHHH----HHHHHHHHHhhccc-----c
Confidence            7442   1     123688999999999999998766653    344544443332    22222222221110     0


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHH
Q 023136          155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMV  230 (287)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~  230 (287)
                      -..+...+ .-+..+++=..-|...+.+.++.+-.+.=.++.+--+++.+-++++++|+=|..++    +|++++++|..
T Consensus       203 ~~~~K~t~-~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai  281 (288)
T COG4975         203 KRFNKYTW-LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAI  281 (288)
T ss_pred             cchHHHHH-HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhh
Confidence            11111122 23334444334466666666666655555566777889999999999999998876    57788888876


Q ss_pred             HHH
Q 023136          231 LYS  233 (287)
Q Consensus       231 ~~~  233 (287)
                      +..
T Consensus       282 ~lg  284 (288)
T COG4975         282 LLG  284 (288)
T ss_pred             hhh
Confidence            643

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.07  E-value=0.0015  Score=46.98  Aligned_cols=57  Identities=21%  Similarity=0.146  Sum_probs=35.4

Q ss_pred             HHHHHHHHhhhcccccccchhHHHH-HHhhHHHHHHHHHHHhcceecchhhHHHHHHH
Q 023136           18 GVLNGISIGLLNLSLGFNSVGFYQM-TKLAIIPCTILLETLFFRKKFSRNIQLSLVIL   74 (287)
Q Consensus        18 ~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~   74 (287)
                      ..+++.+..+...+++++|.+.+-. ......+.+.+.+.++++|+++..|++++.++
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            4478889999999999999997754 55689999999999999999999999998864

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.05  E-value=0.025  Score=41.78  Aligned_cols=51  Identities=22%  Similarity=0.503  Sum_probs=42.5

Q ss_pred             hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      +++.+ .+.+++..-+-.+.+.+.++++|+|++|+.+++|+.+++.|++..+
T Consensus        56 l~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         56 VKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            45443 3456677777888999999999999999999999999999998754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.98  E-value=0.003  Score=49.55  Aligned_cols=65  Identities=23%  Similarity=0.177  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136           17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA   81 (287)
Q Consensus        17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~   81 (287)
                      .+++........+..++++++-..+++.....+.+.++++++++|+++..++.|+++.++|..+.
T Consensus        87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            35556677778888999999999999999999999999999999999999999999999999765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.91  E-value=0.011  Score=43.83  Aligned_cols=53  Identities=9%  Similarity=0.333  Sum_probs=42.2

Q ss_pred             hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      +++.+ .+.+++..-+..+.+.+.|+++|+|++|+.+++|+.+|++|+++.+..
T Consensus        51 l~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         51 LAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            44443 233455566678888999999999999999999999999999997643

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.86  E-value=0.012  Score=52.57  Aligned_cols=141  Identities=13%  Similarity=0.039  Sum_probs=83.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhcc--ccCCccccccccchhHHHHHH
Q 023136           89 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG--LLTNKNVFAFKYTPYVLFFIV  166 (287)
Q Consensus        89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  166 (287)
                      ...|+++.+++++|++...+-.|+ .|+   -++|.. |- ..+.+..++.......  .++..+.. .+.+...+...+
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~---w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~-~~~~~~~~~~~~   77 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKK---WSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYY-SSFSGSTLLPVF   77 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCC---CchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHH-HhcCHHHHHHHH
Confidence            357999999999999999998888 332   345544 43 2333222222211110  01111111 113344555566


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhH-HHhhhhhHHHHHHHHHHhcCCCc---c----hhhhhhHHHHHHHHHHHHHhh
Q 023136          167 LSCLISVSVNFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPF---S----WRNILGILIAVIGMVLYSYCC  236 (287)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~l~~v~~~~~s~~~~~e~~---~----~~~~~G~~lil~g~~~~~~~~  236 (287)
                      +++++=..-|...+...++.+-... .+..-++-+...+++.+++||-.   +    ...++|.+++++|+.+..+.-
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666555556666666666554333 33444567788899999999743   2    235689999999999988743

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.82  E-value=0.052  Score=47.98  Aligned_cols=140  Identities=13%  Similarity=0.146  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHhHHHHHHHHHHHHhhc-----cccCCccccccccchhHHHHH
Q 023136           93 SVLSLLAVLTTCVAQIMTNTIQKKF--KVSSTQLLYQSCPYQALTLFIIGPFLD-----GLLTNKNVFAFKYTPYVLFFI  165 (287)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  165 (287)
                      .+..+...+..+......|+..++.  +..|.+..+..=+.-.++.......-+     ......... ....+.-....
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~-i~~~~~~~lk~   95 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKE-ILAAPRETLKV   95 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHH-HHhChHHHHHH
Confidence            4445555666666676777666533  345555555544444433332222221     111111110 01112123455


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136          166 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  233 (287)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~  233 (287)
                      .+.+++-...|...|..+++.+|.++.+...++...+.+++.++++++++..||....+..+|+.+.+
T Consensus        96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            55555555566677778999999999999999999999999999999999999999999999999876

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.81  E-value=0.016  Score=42.64  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=43.7

Q ss_pred             hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      +++.+ .+.+++..-+-.+.+.+.++++|+|++|+.+++|+.++++|++..+.
T Consensus        50 l~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         50 MKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            44443 35667778888899999999999999999999999999999998653

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.76  E-value=0.0066  Score=53.42  Aligned_cols=119  Identities=15%  Similarity=0.244  Sum_probs=78.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136           88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  167 (287)
Q Consensus        88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (287)
                      ...+|..+++.++++.+...+++|+...+.+.....-..     .                   ..+...++ .|+..+.
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-----~-------------------~~~~l~~~-~W~~G~~   58 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-----G-------------------GRSYLRRP-LWWIGLL   58 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----h-------------------hhHHHhhH-HHHHHHH
Confidence            356899999999999999999999987643211110000     0                   00000111 1222222


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          168 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      ...++   +...+.++...+......++.+.-++..+++.++++|+++...+.|+.++++|..+...
T Consensus        59 ~~~~g---~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   59 LMVLG---EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHhcc---hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            22334   23333445566666777788888999999999999999999999999999999987643

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.76  E-value=0.0032  Score=46.66  Aligned_cols=65  Identities=23%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             HHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136           18 GVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT   82 (287)
Q Consensus        18 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~   82 (287)
                      =+++..++..+++.++..+.+.+..+ +++.-++|++.++++.+|..+++.++|+.++++|+.+++
T Consensus        48 f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   48 FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            34556677788888999999988877 588999999999998888899999999999999998863

Many members are annotated as potential transmembrane proteins.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.017  Score=42.23  Aligned_cols=53  Identities=15%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      +++.+ .+.+++..-+-.+.+.+.++++|+|++|+.+++|+.++++|++..+..
T Consensus        51 lk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          51 LKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            44443 345677777788899999999999999999999999999999987653

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.62  E-value=0.0071  Score=51.60  Aligned_cols=132  Identities=15%  Similarity=0.205  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      |++-+++|+++++...+=.|+....   |+.-.+.++.....++-++.....+ .+            .+..+.+++|.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g---Dg~~fQw~~~~~i~~~g~~v~~~~~-~p------------~f~p~amlgG~l   64 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG---DGFFFQWVMCSGIFLVGLVVNLILG-FP------------PFYPWAMLGGAL   64 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC---CcHHHHHHHHHHHHHHHHHHHHhcC-CC------------cceeHHHhhhhh
Confidence            5677889999999998877765432   5555555554333333222222221 10            111233444443


Q ss_pred             HHHHHHHHHHhhcccc-hhhHHHhhhhhHHHHHHHHHH-hcCCC-----cchhhhhhHHHHHHHHHHHHHhhcch
Q 023136          172 SVSVNFSTFLVIGKTS-PVTYQVLGHLKTCLVLAFGYV-LLHDP-----FSWRNILGILIAVIGMVLYSYCCSLE  239 (287)
Q Consensus       172 ~~~~~~~~~~~~~~~~-~~~~s~~~~l~~v~~~~~s~~-~~~e~-----~~~~~~~G~~lil~g~~~~~~~~~~~  239 (287)
                      =...|.+..-.++..+ ++-..+.+..+-+.+...|-+ +||++     -.+.+++|.+++++|..++..-|...
T Consensus        65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            3333444444444443 223344566666777777655 56542     45678899999999999987655443

The region concerned is approximately 280 residues long.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.26  E-value=0.056  Score=46.51  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhh-hhhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHHHHHH
Q 023136          160 YVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLG-HLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSY  234 (287)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~~~~~  234 (287)
                      ..+...++++++=..-+...+...++.+-..+.-+. -++.+.+.++++++|||.-+..++    ++++++++|+.+.++
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            455556666666555666666666666555554444 456778899999999997776655    478899999998776


Q ss_pred             hhcch
Q 023136          235 CCSLE  239 (287)
Q Consensus       235 ~~~~~  239 (287)
                      .++++
T Consensus       123 ~~~~~  127 (269)
T PF06800_consen  123 QDKKS  127 (269)
T ss_pred             ccccc
Confidence            54433

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.25  E-value=0.00063  Score=57.47  Aligned_cols=135  Identities=15%  Similarity=0.194  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136           91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  170 (287)
Q Consensus        91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (287)
                      .|..+.-.+ ..+....+..++....   +|.+.-....+.-.++..++....-.+.-.+.. .-.       .+++=|+
T Consensus        38 ~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g-~R~-------~LiLRg~  105 (346)
T KOG4510|consen   38 LGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQPVIGPEG-KRK-------WLILRGF  105 (346)
T ss_pred             cCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeeeeecCCC-cEE-------EEEeehh
Confidence            577776666 6666667766666552   555554444222222222221111111000000 001       1222233


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          171 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      .++..-...|+++++.+-..++++....|++++++++.+++|+.|....+|..+.+.|+++......
T Consensus       106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF  172 (346)
T KOG4510|consen  106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF  172 (346)
T ss_pred             hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence            3333345555566677777788899999999999999999999999999999999999998765433

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.62  E-value=0.019  Score=48.38  Aligned_cols=68  Identities=7%  Similarity=0.047  Sum_probs=57.1

Q ss_pred             hhHHHHHHHHH-----HHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhhe
Q 023136           12 RAVMGFGVLNG-----ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVG   79 (287)
Q Consensus        12 ~~~~~~~~~~~-----~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~   79 (287)
                      ..+++.++..+     +-+.+...++..+|...+.++.+..|.+.++.++++++|+++..||+++.+++++..
T Consensus       206 p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         206 PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            34555544332     446677789999999999999999999999999999999999999999999888776

>TIGR00803 nst UDP-galactose transporter

Probab=95.41  E-value=0.03  Score=46.96  Aligned_cols=67  Identities=15%  Similarity=0.097  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhhee
Q 023136           14 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI   80 (287)
Q Consensus        14 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l   80 (287)
                      .....+..+.+..+....++|.+.....+...+.++++.+++.++++++++..++.|..+.+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            3344455667777888899999999999999999999999999999999999999999999999865

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.97  E-value=0.089  Score=37.72  Aligned_cols=45  Identities=24%  Similarity=0.278  Sum_probs=23.6

Q ss_pred             Hhhcccchhh-HHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 023136          181 LVIGKTSPVT-YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA  225 (287)
Q Consensus       181 ~~~~~~~~~~-~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~li  225 (287)
                      .++++.+... +.+..-+..+...+.|.++|||++|+.+++|+.+|
T Consensus        48 ~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   48 LALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3466654333 35566677889999999999999999999998875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.62  E-value=0.017  Score=48.44  Aligned_cols=130  Identities=17%  Similarity=0.135  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      .+++++.-++.|+..-....|...    .|.+-..-+. .+++...+...+..         +...+...+..-+.+++.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT-~GALifaiiv~~~~---------~p~~T~~~~iv~~isG~~   68 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTT-LGALIFAIIVFLFV---------SPELTLTIFIVGFISGAF   68 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhcc-HHHHHHHHHHheee---------cCccchhhHHHHHHhhhH
Confidence            567888889999988776665543    3443333232 23333322222111         111223334444455554


Q ss_pred             HHHHHHHHHHhhcccchhhHHHhhh-hhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHHHHHHh
Q 023136          172 SVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSYC  235 (287)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~s~~~~-l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~~~~~~  235 (287)
                      =.+-+...+...+..+...++.+.+ ++-+-+.+++++.|||..++.++    ++.+++++|+.+..+.
T Consensus        69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~  137 (288)
T COG4975          69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ  137 (288)
T ss_pred             hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee
Confidence            4455666667666665555554333 45678889999999998888765    3667888888776543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.81  E-value=0.36  Score=40.44  Aligned_cols=62  Identities=21%  Similarity=0.340  Sum_probs=51.4

Q ss_pred             HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          176 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       176 ~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      ......+++..+=-+..+--.-+|+-.+++|+++.+.+-+|..+....+|++|+.++.+++.
T Consensus        99 MVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~  160 (337)
T KOG1580|consen   99 MVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN  160 (337)
T ss_pred             HHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence            34455557777666666677788999999999999999999999999999999999988644

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=93.75  E-value=0.5  Score=35.10  Aligned_cols=38  Identities=24%  Similarity=0.382  Sum_probs=32.6

Q ss_pred             hhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 023136          194 LGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL  231 (287)
Q Consensus       194 ~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~  231 (287)
                      .+.+.-+++.+.++++..|..+...++|+.+++.|+.+
T Consensus        74 ~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   74 ANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            45677889999998888888899999999999999754

Many members are annotated as potential transmembrane proteins.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=91.99  E-value=0.18  Score=44.99  Aligned_cols=77  Identities=13%  Similarity=0.273  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136          161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  237 (287)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~  237 (287)
                      .....+..+.+=+..|+....+++.++.....++.....++++.++.++-+|++|+..+++..+-+.|+++.++.+.
T Consensus       158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s  234 (416)
T KOG2765|consen  158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS  234 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence            34455666666667788888889999999999999999999999999999999999999999999999998876544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=91.01  E-value=0.91  Score=35.09  Aligned_cols=71  Identities=15%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             CCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhh-HHHHHHHHHHH----hcceecchhhHHHHHHHhhhhee
Q 023136            9 FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLA-IIPCTILLETL----FFRKKFSRNIQLSLVILLVGVGI   80 (287)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~-~pi~~~l~~~l----~~~e~~~~~~~~~~~l~~~G~~l   80 (287)
                      .||..++ -+++......+.......++++....+.-+ +-+...++..+    .-|++++++|.+|+.++++|+.+
T Consensus        63 ~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   63 VPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             CChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            3343333 577888888888899999988877665544 45555556654    45678999999999999999864

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=90.77  E-value=5.2  Score=35.61  Aligned_cols=26  Identities=8%  Similarity=0.202  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023136           90 VLGSVLSLLAVLTTCVAQIMTNTIQK  115 (287)
Q Consensus        90 ~~G~~l~l~s~~~~a~~~v~~~~~~~  115 (287)
                      ..|+++-.+++++.+.+.+=.||..+
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~   31 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKG   31 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCC
Confidence            47999999999999999987777654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.49  E-value=0.19  Score=43.55  Aligned_cols=75  Identities=11%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhhee
Q 023136            6 HKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI   80 (287)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l   80 (287)
                      ..+--+++++..+.+.+.+..+-+.-++.-.+=..+++..+--+++++++.++++.+.++.||+|+.+.+.|+.+
T Consensus       236 ~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  236 EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            333446788889999998888888888777777777888899999999999999999999999999988888753

>PRK02237 hypothetical protein; Provisional

Probab=89.24  E-value=3.1  Score=30.45  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=40.7

Q ss_pred             hHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136          190 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  236 (287)
Q Consensus       190 ~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~  236 (287)
                      ..+..+-+-.+.++++.+.+-|+++|...++|..+.++|+.+..+.+
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            45566777788999999999999999999999999999998876643

>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines

Probab=86.80  E-value=9.3  Score=35.48  Aligned_cols=23  Identities=17%  Similarity=0.592  Sum_probs=16.8

Q ss_pred             CcchhhhhhHHHHHHHHHHHHHh
Q 023136          213 PFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       213 ~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      .-++..++|.++.++.++.....
T Consensus       282 ~~~~~~iig~i~~~~~v~yss~r  304 (429)
T PF03348_consen  282 WNTWQSIIGLIFTFVSVLYSSFR  304 (429)
T ss_pred             cchHHHHHHHHHHHHHHHHhccc
Confidence            45667789988888887765543

The function of these proteins is unknown. ; GO: 0016020 membrane

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=86.69  E-value=3.4  Score=30.13  Aligned_cols=47  Identities=15%  Similarity=0.297  Sum_probs=40.6

Q ss_pred             hHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136          190 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  236 (287)
Q Consensus       190 ~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~  236 (287)
                      .++..+-+-.+.++++++.+-++++|...++|..+.++|+.+..+.+
T Consensus        59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            35556677788999999999999999999999999999999877643

; GO: 0016020 membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.45  E-value=22  Score=31.31  Aligned_cols=135  Identities=11%  Similarity=0.107  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136           93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSST-QLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  171 (287)
Q Consensus        93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (287)
                      ..-++.-+++..+..+..|.....++.+.. .++.+|++.+.+++...-..--.     +..+.++.  ..--.+-..++
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-----~~~~l~~~--~~kk~~P~~~l   86 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-----NFRPLDLR--TAKKWFPVSLL   86 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-----ecCCcChH--HHHHHccHHHH
Confidence            444555555556667777887776665443 34457887777666554332110     00111111  11111111222


Q ss_pred             HHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          172 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      -++..+.....+++.+--...++..+.++...+...++++.+++...+.....+++|...+..
T Consensus        87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~  149 (314)
T KOG1444|consen   87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF  149 (314)
T ss_pred             HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence            222334455568999999999999999999999999999999999999999999998877643

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=84.74  E-value=0.39  Score=39.09  Aligned_cols=60  Identities=23%  Similarity=0.386  Sum_probs=53.7

Q ss_pred             HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          176 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       176 ~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      |+.+..++++.+|..++.+..-...+..+++++.++|++....++..++.+.|+++..+.
T Consensus        67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            677777899999999999988899999999999999999999999999999998876654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=83.92  E-value=0.9  Score=40.20  Aligned_cols=107  Identities=17%  Similarity=0.123  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhcCC-CHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 023136          106 AQIMTNTIQKKFKV-SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIG  184 (287)
Q Consensus       106 ~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (287)
                      .+++.|+.+++++. -|..++..+..++.+.....-. ....+.....     +...+.-++-.++......+.....++
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~-l~~~~~~~~~-----~~~~~~~llpl~~~~~~~~v~~n~Sl~  105 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKV-LKLVPPSKIS-----SKLPLRTLLPLGLVFCISHVLGNVSLS  105 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCCCccc-----cccchHHHHHHHHHHHHHHHhcchhhh
Confidence            45567777774332 4555555544445544443322 2211111111     112223344444444444556666689


Q ss_pred             ccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhh
Q 023136          185 KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN  218 (287)
Q Consensus       185 ~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~  218 (287)
                      +.+-..+.++..++|+++.+++.++.+|+.+...
T Consensus       106 ~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~  139 (316)
T KOG1441|consen  106 YVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT  139 (316)
T ss_pred             ccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE
Confidence            9999999999999999999999999999876643

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.68  E-value=0.22  Score=43.56  Aligned_cols=120  Identities=15%  Similarity=0.216  Sum_probs=81.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHH
Q 023136           87 QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV  166 (287)
Q Consensus        87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (287)
                      ..+..|.++++.+++..+...++.||..++..  ..   .              . .    ......+.... ..|+..+
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~--~~---~--------------~-r----a~~gg~~yl~~-~~Ww~G~   71 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAG--AS---G--------------L-R----AGEGGYGYLKE-PLWWAGM   71 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHHh--hh---c--------------c-c----ccCCCcchhhh-HHHHHHH
Confidence            34678999999999999999998888777431  10   0              0 0    00011111111 2344555


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          167 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      +.-.++=..|++.   ....++.....++.+..+...+++..+++|++++...+|+++.++|..+...
T Consensus        72 ltm~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   72 LTMIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence            5555563334444   4455566777788888999999999999999999999999999999977654

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=83.63  E-value=32  Score=30.75  Aligned_cols=220  Identities=16%  Similarity=0.163  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHhhhcccccccchhHHH-HHHhhHHHHHHHHHHHhcc-------eecchhhHHHHHHHhhhheeeeec-
Q 023136           14 VMGFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFR-------KKFSRNIQLSLVILLVGVGIATVT-   84 (287)
Q Consensus        14 ~~~~~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~l~~~l~~~-------e~~~~~~~~~~~l~~~G~~l~~~~-   84 (287)
                      ....+++.+.+-..+-.+.+|+..+..+ +...++-++-.++-.++.+       ++-....++|+++.++|+.++... 
T Consensus        76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG  155 (344)
T PF06379_consen   76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG  155 (344)
T ss_pred             HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence            3445677777777777888998777544 3333444444444333332       333457889999999999988651 


Q ss_pred             ---C-------Cccc-hHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCCHHHHH--HHH-hHH-HHHHHHHHHHhh
Q 023136           85 ---D-------LQLN-VLGSVLSLLAVLTTCVAQIMTNTIQK------KFKVSSTQLL--YQS-CPY-QALTLFIIGPFL  143 (287)
Q Consensus        85 ---~-------~~~~-~~G~~l~l~s~~~~a~~~v~~~~~~~------~~~~~~~~~~--~~~-~~~-~~~~l~~~~~~~  143 (287)
                         |       .+++ ..|.++++.|.++.|..+.-.+.-..      +.+.+|+-..  .|. ... +.+.-+++....
T Consensus       156 ~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~  235 (344)
T PF06379_consen  156 SMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLIL  235 (344)
T ss_pred             HhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHH
Confidence               1       1222 37999999999999988775443221      1222332100  110 001 222223322222


Q ss_pred             ccc-cC--Cccccccccc--hhHHHHHHHHHHHHHHHHHHHHHhhc----ccchhhHHHhhhhhHHHHHHHHHHhcCC--
Q 023136          144 DGL-LT--NKNVFAFKYT--PYVLFFIVLSCLISVSVNFSTFLVIG----KTSPVTYQVLGHLKTCLVLAFGYVLLHD--  212 (287)
Q Consensus       144 ~~~-~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~l~~v~~~~~s~~~~~e--  212 (287)
                      ... .+  ...+.....+  ..-.....+.+++=|......-+.-.    ..+.+.-.+.+.+..+++-+++.+ ++|  
T Consensus       236 l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWK  314 (344)
T PF06379_consen  236 LAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWK  314 (344)
T ss_pred             HhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence            111 11  0111111111  12233334444433322222212222    233556666777777788888874 445  


Q ss_pred             ----CcchhhhhhHHHHHHHHHHHHH
Q 023136          213 ----PFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       213 ----~~~~~~~~G~~lil~g~~~~~~  234 (287)
                          +.-..-++|+++++.++.+.-+
T Consensus       315 g~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  315 GASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHHhc
Confidence                2223346788888888876543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 41/268 (15%), Positives = 73/268 (27%), Gaps = 75/268 (27%)

Query: 7   KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQM-----TKLAIIPCTILLETLFFRK 61
           + F    V        +   LL L    N V    +     T +A+  C     +   + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVC----LSYKVQC 178

Query: 62  KFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSS 121
           K    I        + +      +          ++L +L   + QI  N   +    S+
Sbjct: 179 KMDFKI------FWLNLKNCNSPE----------TVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 122 TQLLYQSCPYQALTLFIIGPFLDGLLT-----NKNVF-AFKYTPYVLFFIVLSCLISVSV 175
            +L   S   +   L    P+ + LL      N   + AF           LSC I    
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----------LSCKI---- 268

Query: 176 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235
                L+  +   VT  +     T + L           +   +  +L+  +        
Sbjct: 269 -----LLTTRFKQVTDFLSAATTTHISL----DHHSMTLTPDEVKSLLLKYLDC------ 313

Query: 236 CSLESQQKASETSSQLP-QVKEGETDPL 262
                          LP +V     +P 
Sbjct: 314 -----------RPQDLPREVLTT--NPR 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.67
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.44
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.37
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.18

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.67  E-value=3.6e-08  Score=75.12  Aligned_cols=60  Identities=7%  Similarity=0.169  Sum_probs=42.8

Q ss_pred             HHHHHHhhcccchhhHHHh-hhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136          176 NFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  235 (287)
Q Consensus       176 ~~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~  235 (287)
                      .++....+++.++..+..+ ..+.|+++.++|+++|||++++.+++|+++|++|+++.+..
T Consensus        44 ~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4555666899998888777 89999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.44  E-value=2.8e-07  Score=67.61  Aligned_cols=70  Identities=20%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec
Q 023136           15 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT   84 (287)
Q Consensus        15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~   84 (287)
                      +...+++++++.+...+++++|.+.+..+ ..+.|+++++++++++||++++.|++|+.++++|++++...
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33355678889999999999999999888 89999999999999999999999999999999999977653

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.37  E-value=2.1e-07  Score=70.83  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136           15 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV   83 (287)
Q Consensus        15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~   83 (287)
                      +...+++++++++.+.+++++|++.+..+ .++.|++++++++++++|++++.+++|++++++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34455678899999999999999988888 8999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.18  E-value=4e-05  Score=55.99  Aligned_cols=58  Identities=7%  Similarity=0.201  Sum_probs=49.9

Q ss_pred             HHHHHhhcccchhhHHHh-hhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136          177 FSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  234 (287)
Q Consensus       177 ~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~  234 (287)
                      +.....+++.+...+..+ ..+.|+.+.++++++|||++|+.+++|..+|++|+++.+.
T Consensus        45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344455888877777666 7899999999999999999999999999999999998764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00