Citrus Sinensis ID: 023141

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYNFHAGSNCCPLLGYSLYGS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccc
cccEEcEccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEccHHccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccEEcccc
maaatlsvrpnrlspgsqiprppavhhlnptchptplkptkselfRGLTSLSRRTLAASGvakagsraddsapfEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQrragkvvdssiryadvnpvgtpgmgpmpqwlQTSLKKstvsvenpstgdlgiqaGVYGALMVLTYVngtstssiapyagadvpglILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYnfhagsnccpllgyslygs
maaatlsvrpnrlspgsqiprppavhhlnptchptplkPTKSELFRGLTSLSRRTLaasgvakagsraddsapfEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQrragkvvdssirYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYNFHAGSNCCPLLGYSLYGS
MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLfrmsfhsrsmsfLYFWYNFHAGSNCCPLLGYSLYGS
*******************************************************************************NALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPV****************************GDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYNFHAGSNCCPLLGYSLY**
*******************************************************************************NALKLLGVSETASFDEILRAKNSIVANC****EAIAQVEAAYDMLLM**************************************SLKKST*SVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYNFHAGSNCCPLLGYSLYG*
************LSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRR******************PFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTS**********PSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYNFHAGSNCCPLLGYSLYGS
*****L***PNRLSPGSQIPRPPAVHHLNPTC********************************************SVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNP*****MGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYNFHAGSNCCPLLGYSLYGS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRMSFHSRSMSFLYFWYNFHAGSNCCPLLGYSLYGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
255560509293 conserved hypothetical protein [Ricinus 0.825 0.805 0.707 5e-88
224080648231 predicted protein [Populus trichocarpa] 0.793 0.982 0.742 8e-87
224103153289 predicted protein [Populus trichocarpa] 0.783 0.775 0.717 1e-85
225428078291 PREDICTED: uncharacterized protein LOC10 0.804 0.790 0.695 7e-83
356575460280 PREDICTED: uncharacterized protein LOC10 0.779 0.796 0.690 6e-80
356536390280 PREDICTED: uncharacterized protein LOC10 0.779 0.796 0.677 2e-78
217071890287 unknown [Medicago truncatula] gi|3885226 0.807 0.804 0.644 2e-75
297744582219 unnamed protein product [Vitis vinifera] 0.569 0.744 0.815 3e-71
449458636287 PREDICTED: uncharacterized protein LOC10 0.786 0.783 0.634 7e-71
388507458274 unknown [Lotus japonicus] 0.783 0.817 0.668 5e-66
>gi|255560509|ref|XP_002521269.1| conserved hypothetical protein [Ricinus communis] gi|223539537|gb|EEF41125.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 169/239 (70%), Positives = 192/239 (80%), Gaps = 3/239 (1%)

Query: 1   MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASG 60
           MAAA LSVRPN LS  S  PRPP       T   T L+  K E +R     SRR  +  G
Sbjct: 1   MAAAPLSVRPNSLSSNSAFPRPPTAP--TSTTISTQLQSIKKEPWRLTILPSRRYFSGKG 58

Query: 61  V-AKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEA 119
             A+A SRADDSAPFEMSVENALKLLGVSE ASFD+ILRAK SI+A+CKDDQEA+AQVEA
Sbjct: 59  ARARASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKKSILASCKDDQEAVAQVEA 118

Query: 120 AYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTG 179
           AYDMLLM+SLTQRRAGKV +S IRYADV P+  PGMG +PQWLQ ++KK+ VSVE PSTG
Sbjct: 119 AYDMLLMQSLTQRRAGKVANSDIRYADVKPINGPGMGSVPQWLQATMKKTPVSVETPSTG 178

Query: 180 DLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGN 238
           DLGI+AGVYGA+MVLTYVNG S+ S+APYAGADVPGLILA++FGASLYF+T+KNVKLG 
Sbjct: 179 DLGIRAGVYGAMMVLTYVNGASSISVAPYAGADVPGLILATTFGASLYFLTKKNVKLGK 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224080648|ref|XP_002306195.1| predicted protein [Populus trichocarpa] gi|222849159|gb|EEE86706.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103153|ref|XP_002312946.1| predicted protein [Populus trichocarpa] gi|222849354|gb|EEE86901.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428078|ref|XP_002278026.1| PREDICTED: uncharacterized protein LOC100265837 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575460|ref|XP_003555859.1| PREDICTED: uncharacterized protein LOC100794285 [Glycine max] Back     alignment and taxonomy information
>gi|356536390|ref|XP_003536721.1| PREDICTED: uncharacterized protein LOC100790896 [Glycine max] Back     alignment and taxonomy information
>gi|217071890|gb|ACJ84305.1| unknown [Medicago truncatula] gi|388522647|gb|AFK49385.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297744582|emb|CBI37844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458636|ref|XP_004147053.1| PREDICTED: uncharacterized protein LOC101221865 [Cucumis sativus] gi|449518109|ref|XP_004166086.1| PREDICTED: uncharacterized LOC101221865 [Cucumis sativus] Back     alignment and taxonomy information
>gi|388507458|gb|AFK41795.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2051462287 AT2G20920 [Arabidopsis thalian 0.769 0.766 0.627 4.8e-62
TAIR|locus:2080883278 AT3G51140 "AT3G51140" [Arabido 0.286 0.294 0.305 0.00035
TAIR|locus:2051462 AT2G20920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 155/247 (62%), Positives = 179/247 (72%)

Query:     1 MAAATLSV-RPNRLSPGSQ-IPRPPAVHHLNPTCHPTPLK-PT-KSELFRGLTSL--SRR 54
             MA A LS  RPNRLS  S  +P       L+P   PT L+ P+ K++L+R    L  +RR
Sbjct:     1 MATAALSAARPNRLSSASSDVP-------LHPLYLPTKLQFPSRKTQLWRSAAILLPTRR 53

Query:    55 TLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAI 114
               A     +A SRADDS PF+MSVE ALK+LGVSE ASFDEILRAK SI+A+ KDD  AI
Sbjct:    54 RCAPP---RASSRADDSPPFDMSVETALKVLGVSEGASFDEILRAKKSILASRKDDPNAI 110

Query:   115 AQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADV---NPVGTPGMGPMPQWLQTSLKKSTV 171
             +Q EAAYDMLLM+SL QRRAGKVV ++IRYADV   NP+GT     + QW+    K   V
Sbjct:   111 SQAEAAYDMLLMQSLNQRRAGKVVSNNIRYADVKSSNPLGT---STVTQWM----KNPPV 163

Query:   172 SVENPSTGDLGIQAGVYGALMVLTYVNGTS-TSSIAPYAGADVPGLILASSFGASLYFMT 230
             SV+ PST DLGIQAGVYGA+MVLTYVNG+S  SS  PYAGADVPGLILASSFGASLYFMT
Sbjct:   164 SVDMPSTSDLGIQAGVYGAMMVLTYVNGSSFESSGMPYAGADVPGLILASSFGASLYFMT 223

Query:   231 RKNVKLG 237
             +K VKLG
Sbjct:   224 KKKVKLG 230
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=IDA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
TAIR|locus:2080883 AT3G51140 "AT3G51140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
pfam11833193 pfam11833, DUF3353, Protein of unknown function (D 2e-39
>gnl|CDD|221252 pfam11833, DUF3353, Protein of unknown function (DUF3353) Back     alignment and domain information 
 Score =  136 bits (344), Expect = 2e-39
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 19/164 (11%)

Query: 88  SETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV-VDSSIRYAD 146
           SE ASF+EI  A+N ++A    D++A A++EAAYD +LM+ L +R+ GK+ V  +IRYA+
Sbjct: 1   SEDASFEEIQAARNRLLAEYAGDEQARAKIEAAYDAILMQRLRERQEGKIKVPEAIRYAE 60

Query: 147 VNPVGTPGMG--PMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSS 204
                       P P WLQ    +   S + PS   L I+  ++G L +L  + G     
Sbjct: 61  RAGKPAASKPVNPSPAWLQ----RLLPSFDLPSGQGLLIRLVLFGLLALLLLLQGP---- 112

Query: 205 IAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVF 248
                    P L LA   GA +YF+ RK  + G   + ++S   
Sbjct: 113 ------PSGPQLQLALGTGACIYFLNRKGRRFGR--ALLWSLGG 148

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Length = 193

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
PF11833194 DUF3353: Protein of unknown function (DUF3353); In 100.0
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.6
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.34
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.19
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.18
KOG0713 336 consensus Molecular chaperone (DnaJ superfamily) [ 99.17
PTZ00037 421 DnaJ_C chaperone protein; Provisional 99.17
PRK14296 372 chaperone protein DnaJ; Provisional 99.17
PTZ00100116 DnaJ chaperone protein; Provisional 99.14
PRK14288 369 chaperone protein DnaJ; Provisional 99.13
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.13
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 99.12
PRK14286 372 chaperone protein DnaJ; Provisional 99.11
PRK14299291 chaperone protein DnaJ; Provisional 99.11
PRK14276 380 chaperone protein DnaJ; Provisional 99.11
PRK14287 371 chaperone protein DnaJ; Provisional 99.09
PRK14282 369 chaperone protein DnaJ; Provisional 99.09
PRK14280 376 chaperone protein DnaJ; Provisional 99.06
PRK14283 378 chaperone protein DnaJ; Provisional 99.06
PRK14279 392 chaperone protein DnaJ; Provisional 99.05
PRK10767 371 chaperone protein DnaJ; Provisional 99.05
PRK14294 366 chaperone protein DnaJ; Provisional 99.02
PRK14300 372 chaperone protein DnaJ; Provisional 99.02
PRK14285 365 chaperone protein DnaJ; Provisional 99.02
PRK14295 389 chaperone protein DnaJ; Provisional 99.02
PRK14297 380 chaperone protein DnaJ; Provisional 99.02
PRK14277 386 chaperone protein DnaJ; Provisional 99.01
PRK14298 377 chaperone protein DnaJ; Provisional 99.01
PRK14301 373 chaperone protein DnaJ; Provisional 99.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 98.99
PRK14278 378 chaperone protein DnaJ; Provisional 98.98
PRK14291 382 chaperone protein DnaJ; Provisional 98.98
PRK14281 397 chaperone protein DnaJ; Provisional 98.95
PRK14289 386 chaperone protein DnaJ; Provisional 98.94
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.92
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 98.91
PRK14284 391 chaperone protein DnaJ; Provisional 98.91
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 98.89
PRK14290 365 chaperone protein DnaJ; Provisional 98.88
PRK14292 371 chaperone protein DnaJ; Provisional 98.84
PRK14293 374 chaperone protein DnaJ; Provisional 98.83
PHA03102153 Small T antigen; Reviewed 98.81
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 98.81
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 98.76
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 98.52
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 98.51
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 98.51
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 98.46
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 98.46
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 98.42
PHA02624 647 large T antigen; Provisional 98.37
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 98.33
PRK05014171 hscB co-chaperone HscB; Provisional 98.26
PRK01356166 hscB co-chaperone HscB; Provisional 98.09
PRK03578176 hscB co-chaperone HscB; Provisional 98.06
PRK00294173 hscB co-chaperone HscB; Provisional 98.0
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 97.83
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 97.77
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 97.68
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 97.67
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 97.65
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 97.58
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 97.39
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.28
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 97.25
PF1344662 RPT: A repeated domain in UCH-protein 97.14
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 96.88
PRK01773173 hscB co-chaperone HscB; Provisional 96.75
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 96.25
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 95.68
COG5269 379 ZUO1 Ribosome-associated chaperone zuotin [Transla 94.42
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised Back     alignment and domain information 
Probab=100.00  E-value=3.9e-46  Score=331.21  Aligned_cols=158  Identities=39%  Similarity=0.617  Sum_probs=144.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCcc-cccccccccC---CCCCCCCCCCCChHHH
Q 023141           88 SETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV-VDSSIRYADV---NPVGTPGMGPMPQWLQ  163 (286)
Q Consensus        88 s~~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GKI-V~~~IRyaD~---~~v~~~~~~~~P~Wlq  163 (286)
                      ||||||||||+|||+++++|+||++..++||+|||+|+|+||++||+||| |+++|||+|+   ++..+....+.|+|+|
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~   80 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ   80 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence            68999999999999999999999999999999999999999999999999 9999999998   3334445566899999


Q ss_pred             HhhhcCCceeeCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHhhhhhheeeecchhhhhHHH---
Q 023141          164 TSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNEL---  240 (286)
Q Consensus       164 ~~ikni~~~~etPs~~~l~~~~~vfg~L~~~tl~~g~~~~~~~~~a~~~~p~lqLAlslgasIYFLnrK~~klgRA~---  240 (286)
                      ++    +++|++|++++|++++++||+|++|+++++          ++++|+||||+|+++||||||||+++||||+   
T Consensus        81 ~~----~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~----------~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~  146 (194)
T PF11833_consen   81 RL----LPSFDTPSSQDLLIRAAAFGALGLWSLLFP----------AASGPGLQLALGLGACIYFLNRKERKLGRAFLWT  146 (194)
T ss_pred             hc----ccceeCCCcchHHHHHHHHHHHHHHHHHHc----------CCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            86    788999999999999999999999999983          2689999999999999999999999999998   


Q ss_pred             --HHHHHHHhhheeeeeecCh
Q 023141          241 --SAIYSFVFNLFRMSFHSRS  259 (286)
Q Consensus       241 --l~~~~~~~gs~l~~~~~~~  259 (286)
                        ++++||++|++++....+.
T Consensus       147 ~~~L~~G~~lGs~l~~~l~~~  167 (194)
T PF11833_consen  147 LGGLVVGLILGSLLASWLPVD  167 (194)
T ss_pred             HHHHHHHHHHHHHHHhhcccc
Confidence              5589999999998766443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13446 RPT: A repeated domain in UCH-protein Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2guz_A71 Mitochondrial import inner membrane translocase su 4e-04
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 Back     alignment and structure
 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 75  EMSVENALKLLGVSETA-SFDEILRA-KNSIVANCKD---DQEAIAQVEAAYDMLLMRSL 129
           +M+ + AL++L ++E   +  ++    +  ++AN  D         ++  A D L  R +
Sbjct: 10  KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGI 69

Query: 130 TQ 131
           ++
Sbjct: 70  SK 71

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.4
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.37
2guz_A71 Mitochondrial import inner membrane translocase su 99.37
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.36
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.36
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.34
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.33
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.33
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.31
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.29
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.29
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.28
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.27
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.26
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.25
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.24
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.22
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.18
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.17
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.11
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.09
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.07
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.05
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 98.99
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 98.95
2guz_B65 Mitochondrial import inner membrane translocase su 98.93
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 98.93
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 98.83
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 98.79
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 98.78
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 98.72
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 98.68
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 98.64
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 98.41
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 96.91
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 84.48
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.40  E-value=5.6e-13  Score=104.72  Aligned_cols=61  Identities=25%  Similarity=0.237  Sum_probs=54.5

Q ss_pred             CCCCCCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHHhh
Q 023141           71 SAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQ  131 (286)
Q Consensus        71 ~~~~~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L~~  131 (286)
                      +....|...|+|++|||+++|+.+|||+||++|.++||+|.        +.|.+|++||++|.+...|+
T Consensus         9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   77 (99)
T 2yua_A            9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR   77 (99)
T ss_dssp             CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            33447889999999999999999999999999999999973        58999999999999987744
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1iura_88 a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human 8e-04
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 5/70 (7%), Positives = 18/70 (25%), Gaps = 9/70 (12%)

Query: 72  APFEMSVENALKLLGVSETASFDEILRA---------KNSIVANCKDDQEAIAQVEAAYD 122
            P    ++    ++  +      E  +           +    N     E    ++   +
Sbjct: 9   VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

Query: 123 MLLMRSLTQR 132
            L  ++   +
Sbjct: 69  RLEKQAFLDQ 78

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.25
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.24
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.23
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.08
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.07
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 98.94
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 98.72
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.8e-12  Score=96.13  Aligned_cols=53  Identities=25%  Similarity=0.366  Sum_probs=48.1

Q ss_pred             hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHHh
Q 023141           78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLT  130 (286)
Q Consensus        78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L~  130 (286)
                      .+|.|++|||+++||.+||++||++|..+||||.        +.|.+|+.||++|.+...|
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R   62 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR   62 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHH
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence            4699999999999999999999999999999973        5699999999999987663
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure